Multiple sequence alignment - TraesCS5A01G475800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G475800 chr5A 100.000 4180 0 0 1 4180 650652151 650647972 0.000000e+00 7720.0
1 TraesCS5A01G475800 chr5B 88.452 2113 131 43 617 2663 658928111 658926046 0.000000e+00 2446.0
2 TraesCS5A01G475800 chr5B 88.430 968 57 22 2666 3628 658925722 658924805 0.000000e+00 1116.0
3 TraesCS5A01G475800 chr5B 86.977 215 20 4 3730 3936 658924808 658924594 6.990000e-58 235.0
4 TraesCS5A01G475800 chr5B 90.698 172 12 1 4009 4180 658924563 658924396 4.200000e-55 226.0
5 TraesCS5A01G475800 chr5B 83.732 209 21 7 231 439 658928415 658928220 7.140000e-43 185.0
6 TraesCS5A01G475800 chr5B 85.000 120 17 1 3622 3740 676549899 676549780 2.040000e-23 121.0
7 TraesCS5A01G475800 chr5D 86.527 2093 157 53 626 2648 524452559 524450522 0.000000e+00 2187.0
8 TraesCS5A01G475800 chr5D 84.439 874 62 32 3315 4180 524449475 524448668 0.000000e+00 793.0
9 TraesCS5A01G475800 chr5D 93.680 538 19 7 2666 3195 524449996 524449466 0.000000e+00 791.0
10 TraesCS5A01G475800 chr5D 91.489 235 19 1 2430 2663 24426968 24427202 5.210000e-84 322.0
11 TraesCS5A01G475800 chr5D 91.064 235 20 1 2430 2663 19275782 19276016 2.430000e-82 316.0
12 TraesCS5A01G475800 chr5D 91.064 235 20 1 2430 2663 222759248 222759014 2.430000e-82 316.0
13 TraesCS5A01G475800 chr5D 84.906 212 15 8 230 437 524452895 524452697 9.170000e-47 198.0
14 TraesCS5A01G475800 chr4B 90.722 291 27 0 2720 3010 594845939 594845649 5.070000e-104 388.0
15 TraesCS5A01G475800 chr4B 98.889 90 1 0 532 621 656326483 656326394 1.200000e-35 161.0
16 TraesCS5A01G475800 chr4B 94.681 94 5 0 524 617 567391094 567391001 3.370000e-31 147.0
17 TraesCS5A01G475800 chr4A 90.722 291 27 0 2720 3010 679257460 679257170 5.070000e-104 388.0
18 TraesCS5A01G475800 chr4A 90.041 241 22 2 2424 2663 143493866 143494105 1.130000e-80 311.0
19 TraesCS5A01G475800 chr4A 87.742 155 17 2 2180 2334 611225921 611226073 3.320000e-41 180.0
20 TraesCS5A01G475800 chr4A 88.966 145 16 0 2208 2352 679258476 679258332 3.320000e-41 180.0
21 TraesCS5A01G475800 chr7D 89.619 289 30 0 2720 3008 78417808 78417520 6.600000e-98 368.0
22 TraesCS5A01G475800 chr7D 92.857 98 6 1 527 624 11420215 11420119 1.570000e-29 141.0
23 TraesCS5A01G475800 chr4D 89.347 291 31 0 2720 3010 472488782 472488492 2.370000e-97 366.0
24 TraesCS5A01G475800 chr4D 74.854 684 123 30 1998 2663 327047805 327048457 8.910000e-67 265.0
25 TraesCS5A01G475800 chr7B 89.377 273 27 2 2392 2663 248169095 248169366 4.000000e-90 342.0
26 TraesCS5A01G475800 chr2D 92.340 235 17 1 2430 2663 629088367 629088133 2.410000e-87 333.0
27 TraesCS5A01G475800 chr1D 91.489 235 19 1 2430 2663 361468572 361468338 5.210000e-84 322.0
28 TraesCS5A01G475800 chr1A 90.871 241 20 2 2424 2663 278392382 278392143 5.210000e-84 322.0
29 TraesCS5A01G475800 chr1A 85.047 107 16 0 3625 3731 23822044 23821938 4.420000e-20 110.0
30 TraesCS5A01G475800 chr1A 82.857 105 14 3 3628 3731 99234103 99234204 1.600000e-14 91.6
31 TraesCS5A01G475800 chr6D 91.064 235 20 1 2430 2663 309221176 309221410 2.430000e-82 316.0
32 TraesCS5A01G475800 chr6D 93.814 97 6 0 533 629 464673696 464673600 3.370000e-31 147.0
33 TraesCS5A01G475800 chr3D 90.323 155 14 1 2180 2334 561759210 561759057 7.090000e-48 202.0
34 TraesCS5A01G475800 chr3D 88.462 78 9 0 3623 3700 66739392 66739315 1.240000e-15 95.3
35 TraesCS5A01G475800 chr6B 100.000 85 0 0 533 617 161266408 161266324 1.560000e-34 158.0
36 TraesCS5A01G475800 chr3A 95.652 92 4 0 527 618 739385255 739385346 9.360000e-32 148.0
37 TraesCS5A01G475800 chr3A 93.878 98 5 1 530 627 685700890 685700794 3.370000e-31 147.0
38 TraesCS5A01G475800 chr7A 94.681 94 5 0 526 619 126551897 126551990 3.370000e-31 147.0
39 TraesCS5A01G475800 chr7A 83.636 110 16 1 3625 3732 30650541 30650432 7.390000e-18 102.0
40 TraesCS5A01G475800 chrUn 94.681 94 4 1 531 624 258641905 258641813 1.210000e-30 145.0
41 TraesCS5A01G475800 chr3B 86.916 107 14 0 3625 3731 10631033 10630927 2.040000e-23 121.0
42 TraesCS5A01G475800 chr3B 83.784 111 16 2 3625 3734 397570775 397570666 2.060000e-18 104.0
43 TraesCS5A01G475800 chr2B 84.615 117 17 1 3625 3741 439892751 439892866 9.500000e-22 115.0
44 TraesCS5A01G475800 chr6A 81.452 124 20 3 3612 3733 23880370 23880492 9.560000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G475800 chr5A 650647972 650652151 4179 True 7720.00 7720 100.0000 1 4180 1 chr5A.!!$R1 4179
1 TraesCS5A01G475800 chr5B 658924396 658928415 4019 True 841.60 2446 87.6578 231 4180 5 chr5B.!!$R2 3949
2 TraesCS5A01G475800 chr5D 524448668 524452895 4227 True 992.25 2187 87.3880 230 4180 4 chr5D.!!$R2 3950
3 TraesCS5A01G475800 chr4A 679257170 679258476 1306 True 284.00 388 89.8440 2208 3010 2 chr4A.!!$R1 802
4 TraesCS5A01G475800 chr4D 327047805 327048457 652 False 265.00 265 74.8540 1998 2663 1 chr4D.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 415 0.038166 TCTCACCCAATTCACTGCCC 59.962 55.0 0.0 0.0 0.00 5.36 F
1195 1305 0.247736 GTGGTGGAACTGAGAGCGAT 59.752 55.0 0.0 0.0 36.74 4.58 F
2356 2488 0.391130 TCATCGGTAAGCACAGCACC 60.391 55.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2040 1.066143 TCCACCATCGCCTTCTTCTTC 60.066 52.381 0.0 0.0 0.00 2.87 R
2424 2565 0.038526 AGCACAAATTCAGCAGCAGC 60.039 50.000 0.0 0.0 42.56 5.25 R
3710 4916 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.0 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.260355 CATTGCATCGCAGCCCCG 62.260 66.667 0.00 0.00 40.61 5.73
34 35 4.676586 GGCAACGCGGTTGAACGG 62.677 66.667 20.50 0.00 45.28 4.44
35 36 3.944233 GCAACGCGGTTGAACGGT 61.944 61.111 20.50 0.00 45.28 4.83
36 37 2.052590 CAACGCGGTTGAACGGTG 60.053 61.111 12.47 13.76 45.28 4.94
37 38 3.944233 AACGCGGTTGAACGGTGC 61.944 61.111 12.47 6.12 33.01 5.01
38 39 4.903010 ACGCGGTTGAACGGTGCT 62.903 61.111 12.47 1.99 33.01 4.40
39 40 4.368808 CGCGGTTGAACGGTGCTG 62.369 66.667 0.00 0.00 0.00 4.41
40 41 4.683334 GCGGTTGAACGGTGCTGC 62.683 66.667 4.81 0.00 0.00 5.25
41 42 3.276091 CGGTTGAACGGTGCTGCA 61.276 61.111 0.00 0.00 0.00 4.41
42 43 2.616330 CGGTTGAACGGTGCTGCAT 61.616 57.895 5.27 0.00 0.00 3.96
43 44 1.210155 GGTTGAACGGTGCTGCATC 59.790 57.895 5.27 3.55 0.00 3.91
44 45 1.154413 GTTGAACGGTGCTGCATCG 60.154 57.895 31.44 31.44 44.22 3.84
45 46 2.324330 TTGAACGGTGCTGCATCGG 61.324 57.895 34.92 19.25 42.81 4.18
46 47 2.434185 GAACGGTGCTGCATCGGA 60.434 61.111 34.92 0.00 42.81 4.55
47 48 2.740714 GAACGGTGCTGCATCGGAC 61.741 63.158 34.92 24.52 42.81 4.79
48 49 3.529341 AACGGTGCTGCATCGGACA 62.529 57.895 34.92 0.00 42.81 4.02
49 50 3.490759 CGGTGCTGCATCGGACAC 61.491 66.667 26.54 1.26 34.00 3.67
50 51 3.127533 GGTGCTGCATCGGACACC 61.128 66.667 5.27 0.00 45.22 4.16
61 62 4.203076 GGACACCGGCGCGTCTAT 62.203 66.667 21.64 0.00 32.57 1.98
62 63 2.954868 GACACCGGCGCGTCTATG 60.955 66.667 9.90 9.51 0.00 2.23
71 72 3.384927 GCGTCTATGCGGTGTCAC 58.615 61.111 0.00 0.00 0.00 3.67
72 73 2.505498 GCGTCTATGCGGTGTCACG 61.505 63.158 0.00 0.00 0.00 4.35
73 74 1.135939 CGTCTATGCGGTGTCACGA 59.864 57.895 0.00 0.00 35.47 4.35
74 75 0.861866 CGTCTATGCGGTGTCACGAG 60.862 60.000 0.00 0.00 35.47 4.18
75 76 0.170561 GTCTATGCGGTGTCACGAGT 59.829 55.000 0.00 0.00 35.47 4.18
76 77 0.170339 TCTATGCGGTGTCACGAGTG 59.830 55.000 0.00 0.00 35.47 3.51
77 78 1.413767 CTATGCGGTGTCACGAGTGC 61.414 60.000 0.00 0.00 35.47 4.40
78 79 2.829043 TATGCGGTGTCACGAGTGCC 62.829 60.000 0.00 0.00 35.47 5.01
81 82 4.961511 GGTGTCACGAGTGCCGCA 62.962 66.667 0.41 0.00 43.32 5.69
82 83 2.738521 GTGTCACGAGTGCCGCAT 60.739 61.111 0.00 0.00 43.32 4.73
83 84 2.432456 TGTCACGAGTGCCGCATC 60.432 61.111 0.00 0.00 43.32 3.91
84 85 3.545481 GTCACGAGTGCCGCATCG 61.545 66.667 17.87 17.87 43.32 3.84
110 111 2.125673 GCACCGTGCACCGTCTAT 60.126 61.111 18.79 0.00 44.26 1.98
111 112 1.140161 GCACCGTGCACCGTCTATA 59.860 57.895 18.79 0.00 44.26 1.31
112 113 1.143969 GCACCGTGCACCGTCTATAC 61.144 60.000 18.79 0.00 44.26 1.47
165 166 7.251281 ACTGAAATCTTTCGCCTTAATTAAGC 58.749 34.615 18.18 12.84 40.01 3.09
166 167 7.121315 ACTGAAATCTTTCGCCTTAATTAAGCT 59.879 33.333 18.18 0.00 40.01 3.74
167 168 7.826690 TGAAATCTTTCGCCTTAATTAAGCTT 58.173 30.769 18.18 3.48 40.01 3.74
168 169 7.968405 TGAAATCTTTCGCCTTAATTAAGCTTC 59.032 33.333 18.18 9.23 40.01 3.86
169 170 7.391148 AATCTTTCGCCTTAATTAAGCTTCA 57.609 32.000 18.18 0.00 32.02 3.02
170 171 7.573968 ATCTTTCGCCTTAATTAAGCTTCAT 57.426 32.000 18.18 0.00 32.02 2.57
171 172 8.677148 ATCTTTCGCCTTAATTAAGCTTCATA 57.323 30.769 18.18 3.05 32.02 2.15
172 173 8.142994 TCTTTCGCCTTAATTAAGCTTCATAG 57.857 34.615 18.18 10.84 32.02 2.23
185 186 3.462021 GCTTCATAGCACTAGTCTTGGG 58.538 50.000 0.00 0.00 46.95 4.12
186 187 3.462021 CTTCATAGCACTAGTCTTGGGC 58.538 50.000 0.00 0.00 0.00 5.36
187 188 1.762957 TCATAGCACTAGTCTTGGGCC 59.237 52.381 4.81 0.00 0.00 5.80
188 189 0.753262 ATAGCACTAGTCTTGGGCCG 59.247 55.000 4.81 0.00 0.00 6.13
189 190 1.327690 TAGCACTAGTCTTGGGCCGG 61.328 60.000 4.81 0.00 0.00 6.13
190 191 2.584608 CACTAGTCTTGGGCCGGG 59.415 66.667 2.18 0.00 0.00 5.73
191 192 2.687566 ACTAGTCTTGGGCCGGGG 60.688 66.667 2.18 0.00 0.00 5.73
192 193 2.365105 CTAGTCTTGGGCCGGGGA 60.365 66.667 2.18 0.00 0.00 4.81
193 194 2.365105 TAGTCTTGGGCCGGGGAG 60.365 66.667 2.18 0.00 0.00 4.30
194 195 3.995809 TAGTCTTGGGCCGGGGAGG 62.996 68.421 2.18 0.00 44.97 4.30
196 197 4.995058 TCTTGGGCCGGGGAGGTT 62.995 66.667 2.18 0.00 43.70 3.50
197 198 3.979497 CTTGGGCCGGGGAGGTTT 61.979 66.667 2.18 0.00 43.70 3.27
198 199 3.938637 CTTGGGCCGGGGAGGTTTC 62.939 68.421 2.18 0.00 43.70 2.78
199 200 4.995058 TGGGCCGGGGAGGTTTCT 62.995 66.667 2.18 0.00 43.70 2.52
200 201 4.426313 GGGCCGGGGAGGTTTCTG 62.426 72.222 2.18 0.00 43.70 3.02
212 213 2.587522 AGGTTTCTGCCTCAAGGAAAC 58.412 47.619 0.00 8.66 44.40 2.78
214 215 1.266989 GTTTCTGCCTCAAGGAAACCG 59.733 52.381 0.00 0.00 41.38 4.44
215 216 0.889186 TTCTGCCTCAAGGAAACCGC 60.889 55.000 0.00 0.00 37.39 5.68
216 217 2.668212 TGCCTCAAGGAAACCGCG 60.668 61.111 0.00 0.00 37.39 6.46
217 218 3.431725 GCCTCAAGGAAACCGCGG 61.432 66.667 26.86 26.86 37.39 6.46
218 219 2.746277 CCTCAAGGAAACCGCGGG 60.746 66.667 31.76 11.88 37.39 6.13
219 220 2.032071 CTCAAGGAAACCGCGGGT 59.968 61.111 31.76 23.68 37.65 5.28
220 221 2.281208 TCAAGGAAACCGCGGGTG 60.281 61.111 31.76 11.17 35.34 4.61
221 222 2.593436 CAAGGAAACCGCGGGTGT 60.593 61.111 31.76 14.28 35.34 4.16
222 223 2.593436 AAGGAAACCGCGGGTGTG 60.593 61.111 31.76 3.45 35.34 3.82
247 248 4.679106 GCGACTCCTCTGAATTCTCAATCA 60.679 45.833 7.05 0.00 0.00 2.57
271 272 8.352201 TCATCCATTAGTTTTTGAGACTGTTTG 58.648 33.333 0.00 0.00 0.00 2.93
275 276 8.836413 CCATTAGTTTTTGAGACTGTTTGTAGA 58.164 33.333 0.00 0.00 0.00 2.59
276 277 9.869844 CATTAGTTTTTGAGACTGTTTGTAGAG 57.130 33.333 0.00 0.00 0.00 2.43
277 278 9.614792 ATTAGTTTTTGAGACTGTTTGTAGAGT 57.385 29.630 0.00 0.00 0.00 3.24
279 280 8.649973 AGTTTTTGAGACTGTTTGTAGAGTAG 57.350 34.615 0.00 0.00 0.00 2.57
280 281 8.258708 AGTTTTTGAGACTGTTTGTAGAGTAGT 58.741 33.333 0.00 0.00 0.00 2.73
281 282 8.880750 GTTTTTGAGACTGTTTGTAGAGTAGTT 58.119 33.333 0.00 0.00 0.00 2.24
282 283 8.644318 TTTTGAGACTGTTTGTAGAGTAGTTC 57.356 34.615 0.00 0.00 0.00 3.01
283 284 7.584122 TTGAGACTGTTTGTAGAGTAGTTCT 57.416 36.000 0.00 0.00 40.06 3.01
289 290 8.874744 ACTGTTTGTAGAGTAGTTCTTTCTTC 57.125 34.615 0.00 0.00 37.36 2.87
293 294 7.891183 TTGTAGAGTAGTTCTTTCTTCATGC 57.109 36.000 0.00 0.00 37.36 4.06
299 300 3.733337 AGTTCTTTCTTCATGCGTCAGT 58.267 40.909 0.00 0.00 0.00 3.41
300 301 3.743396 AGTTCTTTCTTCATGCGTCAGTC 59.257 43.478 0.00 0.00 0.00 3.51
350 351 7.223971 GGTTATTCACCAACTTCCTTTTCAAAC 59.776 37.037 0.00 0.00 46.42 2.93
375 376 0.107831 TGGTTACACAGTGCCTGGAC 59.892 55.000 0.00 0.00 35.51 4.02
401 403 3.425162 ACCAAGATCAGTTTCTCACCC 57.575 47.619 0.00 0.00 0.00 4.61
406 408 5.105997 CCAAGATCAGTTTCTCACCCAATTC 60.106 44.000 0.00 0.00 0.00 2.17
410 412 4.136796 TCAGTTTCTCACCCAATTCACTG 58.863 43.478 0.00 0.00 33.19 3.66
413 415 0.038166 TCTCACCCAATTCACTGCCC 59.962 55.000 0.00 0.00 0.00 5.36
458 512 5.106908 CCTTGTCATTTTCTCCTTCTCGAAC 60.107 44.000 0.00 0.00 0.00 3.95
459 513 3.987868 TGTCATTTTCTCCTTCTCGAACG 59.012 43.478 0.00 0.00 0.00 3.95
460 514 3.368236 GTCATTTTCTCCTTCTCGAACGG 59.632 47.826 0.00 0.00 0.00 4.44
461 515 2.450609 TTTTCTCCTTCTCGAACGGG 57.549 50.000 0.00 0.00 0.00 5.28
462 516 1.624336 TTTCTCCTTCTCGAACGGGA 58.376 50.000 0.00 0.00 0.00 5.14
477 531 4.011517 GGAACGAACGGCCCCAGA 62.012 66.667 0.00 0.00 0.00 3.86
485 539 0.676782 AACGGCCCCAGAGAAATTCG 60.677 55.000 0.00 0.00 0.00 3.34
489 543 0.541863 GCCCCAGAGAAATTCGGAGA 59.458 55.000 0.00 0.00 0.00 3.71
536 590 5.071955 GCATGAGCGTCTATTTTGTACTC 57.928 43.478 0.00 0.00 0.00 2.59
537 591 4.025647 GCATGAGCGTCTATTTTGTACTCC 60.026 45.833 0.00 0.00 0.00 3.85
538 592 4.119442 TGAGCGTCTATTTTGTACTCCC 57.881 45.455 0.00 0.00 0.00 4.30
539 593 3.767673 TGAGCGTCTATTTTGTACTCCCT 59.232 43.478 0.00 0.00 0.00 4.20
540 594 4.142227 TGAGCGTCTATTTTGTACTCCCTC 60.142 45.833 0.00 0.00 0.00 4.30
541 595 4.024670 AGCGTCTATTTTGTACTCCCTCT 58.975 43.478 0.00 0.00 0.00 3.69
542 596 4.113354 GCGTCTATTTTGTACTCCCTCTG 58.887 47.826 0.00 0.00 0.00 3.35
543 597 4.381718 GCGTCTATTTTGTACTCCCTCTGT 60.382 45.833 0.00 0.00 0.00 3.41
544 598 5.163581 GCGTCTATTTTGTACTCCCTCTGTA 60.164 44.000 0.00 0.00 0.00 2.74
545 599 6.626623 GCGTCTATTTTGTACTCCCTCTGTAA 60.627 42.308 0.00 0.00 0.00 2.41
546 600 7.318141 CGTCTATTTTGTACTCCCTCTGTAAA 58.682 38.462 0.00 0.00 0.00 2.01
547 601 7.275123 CGTCTATTTTGTACTCCCTCTGTAAAC 59.725 40.741 0.00 0.00 0.00 2.01
548 602 8.312564 GTCTATTTTGTACTCCCTCTGTAAACT 58.687 37.037 0.00 0.00 0.00 2.66
549 603 9.537852 TCTATTTTGTACTCCCTCTGTAAACTA 57.462 33.333 0.00 0.00 0.00 2.24
559 613 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
560 614 8.191534 TCCCTCTGTAAACTAATATAAGAGCC 57.808 38.462 0.00 0.00 0.00 4.70
561 615 8.011290 TCCCTCTGTAAACTAATATAAGAGCCT 58.989 37.037 0.00 0.00 0.00 4.58
562 616 8.652290 CCCTCTGTAAACTAATATAAGAGCCTT 58.348 37.037 0.00 0.00 0.00 4.35
579 633 8.776061 AAGAGCCTTTAGATCACTATTCTAGT 57.224 34.615 0.00 0.00 40.28 2.57
580 634 9.869667 AAGAGCCTTTAGATCACTATTCTAGTA 57.130 33.333 0.00 0.00 37.23 1.82
612 666 9.490379 AATGCTCTTATATTAGTTTACGAAGGG 57.510 33.333 0.00 0.00 0.00 3.95
613 667 8.241497 TGCTCTTATATTAGTTTACGAAGGGA 57.759 34.615 0.00 0.00 0.00 4.20
614 668 8.358148 TGCTCTTATATTAGTTTACGAAGGGAG 58.642 37.037 0.00 0.00 0.00 4.30
615 669 8.358895 GCTCTTATATTAGTTTACGAAGGGAGT 58.641 37.037 0.00 0.00 0.00 3.85
621 675 9.813446 ATATTAGTTTACGAAGGGAGTAGTTTG 57.187 33.333 0.00 0.00 0.00 2.93
622 676 5.541953 AGTTTACGAAGGGAGTAGTTTGT 57.458 39.130 0.00 0.00 0.00 2.83
623 677 5.922053 AGTTTACGAAGGGAGTAGTTTGTT 58.078 37.500 0.00 0.00 0.00 2.83
624 678 6.351711 AGTTTACGAAGGGAGTAGTTTGTTT 58.648 36.000 0.00 0.00 0.00 2.83
645 699 6.763610 TGTTTGTTTGTTTGTTTGTTTCCTCT 59.236 30.769 0.00 0.00 0.00 3.69
646 707 6.777526 TTGTTTGTTTGTTTGTTTCCTCTG 57.222 33.333 0.00 0.00 0.00 3.35
648 709 6.284459 TGTTTGTTTGTTTGTTTCCTCTGTT 58.716 32.000 0.00 0.00 0.00 3.16
650 711 6.777526 TTGTTTGTTTGTTTCCTCTGTTTG 57.222 33.333 0.00 0.00 0.00 2.93
664 725 1.847999 CTGTTTGTTTCTGCTGTTGCG 59.152 47.619 0.00 0.00 43.34 4.85
666 727 1.583404 GTTTGTTTCTGCTGTTGCGTG 59.417 47.619 0.00 0.00 43.34 5.34
717 778 3.426695 GCGGTTTGACTCCAATCAATCAG 60.427 47.826 0.00 0.00 38.37 2.90
718 779 3.753272 CGGTTTGACTCCAATCAATCAGT 59.247 43.478 0.00 0.00 38.37 3.41
719 780 4.142816 CGGTTTGACTCCAATCAATCAGTC 60.143 45.833 0.00 0.00 38.37 3.51
720 781 4.761739 GGTTTGACTCCAATCAATCAGTCA 59.238 41.667 0.00 0.00 42.76 3.41
733 794 5.436175 TCAATCAGTCACACTCTTCCAAAA 58.564 37.500 0.00 0.00 0.00 2.44
788 860 1.216444 CTGCTAGCTGCCAAGACGA 59.784 57.895 17.23 0.00 42.00 4.20
871 955 2.639286 CGCGCTGAATAATGGGGC 59.361 61.111 5.56 0.00 35.94 5.80
872 956 2.908073 CGCGCTGAATAATGGGGCC 61.908 63.158 5.56 0.00 35.90 5.80
955 1047 2.009774 GACAACGGCTAAGCACATGAT 58.990 47.619 0.00 0.00 0.00 2.45
956 1048 2.009774 ACAACGGCTAAGCACATGATC 58.990 47.619 0.00 0.00 0.00 2.92
957 1049 1.004610 CAACGGCTAAGCACATGATCG 60.005 52.381 0.00 0.00 0.00 3.69
958 1050 1.154205 ACGGCTAAGCACATGATCGC 61.154 55.000 0.00 0.00 0.00 4.58
960 1052 1.016627 GGCTAAGCACATGATCGCAA 58.983 50.000 0.00 0.00 0.00 4.85
961 1053 1.401552 GGCTAAGCACATGATCGCAAA 59.598 47.619 0.00 0.00 0.00 3.68
962 1054 2.444351 GCTAAGCACATGATCGCAAAC 58.556 47.619 0.00 0.00 0.00 2.93
963 1055 2.159531 GCTAAGCACATGATCGCAAACA 60.160 45.455 0.00 0.00 0.00 2.83
1079 1182 3.963383 ACGTGTTTGAATGGTTCTGTC 57.037 42.857 0.00 0.00 0.00 3.51
1096 1199 3.964688 TCTGTCTACCTGTGAGTTTGGAA 59.035 43.478 0.00 0.00 0.00 3.53
1097 1200 4.058817 CTGTCTACCTGTGAGTTTGGAAC 58.941 47.826 0.00 0.00 0.00 3.62
1098 1201 3.709653 TGTCTACCTGTGAGTTTGGAACT 59.290 43.478 0.00 0.00 46.38 3.01
1099 1202 4.163458 TGTCTACCTGTGAGTTTGGAACTT 59.837 41.667 0.00 0.00 43.03 2.66
1100 1203 5.123936 GTCTACCTGTGAGTTTGGAACTTT 58.876 41.667 0.00 0.00 43.03 2.66
1101 1204 5.236695 GTCTACCTGTGAGTTTGGAACTTTC 59.763 44.000 0.00 0.00 43.03 2.62
1102 1205 2.943033 ACCTGTGAGTTTGGAACTTTCG 59.057 45.455 0.00 0.00 43.03 3.46
1103 1206 3.202906 CCTGTGAGTTTGGAACTTTCGA 58.797 45.455 0.00 0.00 43.03 3.71
1107 1210 3.064207 TGAGTTTGGAACTTTCGATCGG 58.936 45.455 16.41 1.30 43.03 4.18
1122 1226 0.537143 ATCGGTGAAGCTTGGTTGCA 60.537 50.000 2.10 0.00 34.99 4.08
1125 1229 0.675633 GGTGAAGCTTGGTTGCATGT 59.324 50.000 2.10 0.00 34.99 3.21
1132 1236 4.870123 AGCTTGGTTGCATGTTTTGATA 57.130 36.364 0.00 0.00 34.99 2.15
1133 1237 5.410355 AGCTTGGTTGCATGTTTTGATAT 57.590 34.783 0.00 0.00 34.99 1.63
1141 1245 6.308766 GGTTGCATGTTTTGATATTGTGTCTC 59.691 38.462 0.00 0.00 0.00 3.36
1188 1298 0.472471 GACAAGGGTGGTGGAACTGA 59.528 55.000 0.00 0.00 36.74 3.41
1195 1305 0.247736 GTGGTGGAACTGAGAGCGAT 59.752 55.000 0.00 0.00 36.74 4.58
1407 1526 2.665185 GCACAAGTCCGTCGGCTT 60.665 61.111 6.34 10.61 0.00 4.35
1573 1692 2.780643 CGCTCGTGCTCCAACATG 59.219 61.111 7.97 0.00 36.97 3.21
1756 1875 4.421479 CTCAAGCGGCGGTCGTCT 62.421 66.667 13.68 0.00 41.72 4.18
1766 1885 2.341101 CGGTCGTCTAGCCAGGTGT 61.341 63.158 0.00 0.00 0.00 4.16
1823 1942 3.241530 TCTGGAGCCACCGCAACT 61.242 61.111 0.00 0.00 42.61 3.16
2105 2236 2.509336 GCATGGACCTCACCGACG 60.509 66.667 0.00 0.00 0.00 5.12
2108 2239 2.348888 ATGGACCTCACCGACGACC 61.349 63.158 0.00 0.00 0.00 4.79
2109 2240 4.112341 GGACCTCACCGACGACCG 62.112 72.222 0.00 0.00 38.18 4.79
2110 2241 4.773117 GACCTCACCGACGACCGC 62.773 72.222 0.00 0.00 36.84 5.68
2155 2286 2.768492 CGGGGAGACGTCGGGTAAG 61.768 68.421 10.46 0.00 0.00 2.34
2156 2287 2.421399 GGGGAGACGTCGGGTAAGG 61.421 68.421 10.46 0.00 0.00 2.69
2157 2288 2.421399 GGGAGACGTCGGGTAAGGG 61.421 68.421 10.46 0.00 0.00 3.95
2356 2488 0.391130 TCATCGGTAAGCACAGCACC 60.391 55.000 0.00 0.00 0.00 5.01
2361 2493 4.308458 TAAGCACAGCACCGCCGT 62.308 61.111 0.00 0.00 0.00 5.68
2382 2521 1.476085 CCGGCAAATACAATCCAGCAA 59.524 47.619 0.00 0.00 0.00 3.91
2388 2527 4.802039 GCAAATACAATCCAGCAATGTCAG 59.198 41.667 0.00 0.00 0.00 3.51
2424 2565 4.388165 CAGACAGTAGCACTTTCAGACATG 59.612 45.833 0.00 0.00 27.67 3.21
2428 2593 0.879765 AGCACTTTCAGACATGCTGC 59.120 50.000 11.02 0.00 46.42 5.25
2439 2604 2.094700 AGACATGCTGCTGCTGAATTTG 60.095 45.455 17.00 7.24 40.48 2.32
2440 2605 1.616865 ACATGCTGCTGCTGAATTTGT 59.383 42.857 17.00 7.79 40.48 2.83
2442 2607 0.319211 TGCTGCTGCTGAATTTGTGC 60.319 50.000 17.00 0.00 40.48 4.57
2450 2622 2.689471 TGCTGAATTTGTGCTGTTCTGT 59.311 40.909 0.00 0.00 0.00 3.41
2452 2624 3.732721 GCTGAATTTGTGCTGTTCTGTTC 59.267 43.478 0.00 0.00 0.00 3.18
2571 2744 3.076296 GACTAAGCTGCGCGTGCTG 62.076 63.158 24.61 22.44 43.34 4.41
2613 2786 2.587753 CGCATCGGCCACGGTAAT 60.588 61.111 2.24 0.00 41.39 1.89
2616 2789 1.782028 GCATCGGCCACGGTAATTCC 61.782 60.000 2.24 0.00 41.39 3.01
2645 2866 1.005294 GGTTCTTGCATTGCACTGCG 61.005 55.000 22.16 10.53 45.30 5.18
2660 2886 3.726190 GCACTGCGCTTCTTCAGTAAATC 60.726 47.826 9.73 0.00 41.19 2.17
2662 2888 3.265791 CTGCGCTTCTTCAGTAAATCCT 58.734 45.455 9.73 0.00 0.00 3.24
2663 2889 3.002791 TGCGCTTCTTCAGTAAATCCTG 58.997 45.455 9.73 0.00 0.00 3.86
2664 2890 2.223135 GCGCTTCTTCAGTAAATCCTGC 60.223 50.000 0.00 0.00 32.32 4.85
2671 3762 2.621338 TCAGTAAATCCTGCTTCTGCG 58.379 47.619 0.00 0.00 43.34 5.18
2672 3763 2.233676 TCAGTAAATCCTGCTTCTGCGA 59.766 45.455 0.00 0.00 43.34 5.10
2703 3794 5.895636 TTTGTGTACAATCCTGCTTATGG 57.104 39.130 0.00 0.00 35.55 2.74
2710 3809 2.889045 CAATCCTGCTTATGGATGTGGG 59.111 50.000 0.00 0.00 42.93 4.61
2978 4080 4.154347 GACCTCCTCCCGCAGCTG 62.154 72.222 10.11 10.11 0.00 4.24
3182 4284 0.878523 TGACGGCAAGGAAGTGAACG 60.879 55.000 0.00 0.00 0.00 3.95
3184 4286 0.034896 ACGGCAAGGAAGTGAACGAT 59.965 50.000 0.00 0.00 0.00 3.73
3185 4287 0.443869 CGGCAAGGAAGTGAACGATG 59.556 55.000 0.00 0.00 0.00 3.84
3186 4288 1.808411 GGCAAGGAAGTGAACGATGA 58.192 50.000 0.00 0.00 0.00 2.92
3187 4289 2.359900 GGCAAGGAAGTGAACGATGAT 58.640 47.619 0.00 0.00 0.00 2.45
3188 4290 2.352960 GGCAAGGAAGTGAACGATGATC 59.647 50.000 0.00 0.00 0.00 2.92
3189 4291 3.002791 GCAAGGAAGTGAACGATGATCA 58.997 45.455 0.00 0.00 0.00 2.92
3190 4292 3.436704 GCAAGGAAGTGAACGATGATCAA 59.563 43.478 0.00 0.00 0.00 2.57
3191 4293 4.670221 GCAAGGAAGTGAACGATGATCAAC 60.670 45.833 0.00 0.00 0.00 3.18
3192 4294 4.543590 AGGAAGTGAACGATGATCAACT 57.456 40.909 0.00 0.00 0.00 3.16
3193 4295 4.499183 AGGAAGTGAACGATGATCAACTC 58.501 43.478 0.00 0.00 0.00 3.01
3194 4296 4.221703 AGGAAGTGAACGATGATCAACTCT 59.778 41.667 0.00 0.00 0.00 3.24
3195 4297 4.932200 GGAAGTGAACGATGATCAACTCTT 59.068 41.667 0.00 2.47 0.00 2.85
3196 4298 5.062809 GGAAGTGAACGATGATCAACTCTTC 59.937 44.000 0.00 10.33 31.63 2.87
3197 4299 5.398603 AGTGAACGATGATCAACTCTTCT 57.601 39.130 0.00 0.00 0.00 2.85
3198 4300 5.788450 AGTGAACGATGATCAACTCTTCTT 58.212 37.500 0.00 0.00 0.00 2.52
3199 4301 6.226787 AGTGAACGATGATCAACTCTTCTTT 58.773 36.000 0.00 0.00 0.00 2.52
3200 4302 6.708054 AGTGAACGATGATCAACTCTTCTTTT 59.292 34.615 0.00 0.00 0.00 2.27
3201 4303 7.227512 AGTGAACGATGATCAACTCTTCTTTTT 59.772 33.333 0.00 0.00 0.00 1.94
3202 4304 8.495949 GTGAACGATGATCAACTCTTCTTTTTA 58.504 33.333 0.00 0.00 0.00 1.52
3203 4305 8.495949 TGAACGATGATCAACTCTTCTTTTTAC 58.504 33.333 0.00 0.00 0.00 2.01
3204 4306 8.608844 AACGATGATCAACTCTTCTTTTTACT 57.391 30.769 0.00 0.00 0.00 2.24
3205 4307 8.245701 ACGATGATCAACTCTTCTTTTTACTC 57.754 34.615 0.00 0.00 0.00 2.59
3206 4308 7.332182 ACGATGATCAACTCTTCTTTTTACTCC 59.668 37.037 0.00 0.00 0.00 3.85
3207 4309 7.547370 CGATGATCAACTCTTCTTTTTACTCCT 59.453 37.037 0.00 0.00 0.00 3.69
3208 4310 9.877178 GATGATCAACTCTTCTTTTTACTCCTA 57.123 33.333 0.00 0.00 0.00 2.94
3209 4311 9.883142 ATGATCAACTCTTCTTTTTACTCCTAG 57.117 33.333 0.00 0.00 0.00 3.02
3210 4312 9.090103 TGATCAACTCTTCTTTTTACTCCTAGA 57.910 33.333 0.00 0.00 0.00 2.43
3211 4313 9.930693 GATCAACTCTTCTTTTTACTCCTAGAA 57.069 33.333 0.00 0.00 0.00 2.10
3212 4314 9.936759 ATCAACTCTTCTTTTTACTCCTAGAAG 57.063 33.333 0.00 0.00 43.04 2.85
3213 4315 9.144298 TCAACTCTTCTTTTTACTCCTAGAAGA 57.856 33.333 11.56 11.56 46.15 2.87
3214 4316 9.765795 CAACTCTTCTTTTTACTCCTAGAAGAA 57.234 33.333 12.74 0.00 46.98 2.52
3215 4317 9.990360 AACTCTTCTTTTTACTCCTAGAAGAAG 57.010 33.333 16.26 16.26 46.98 2.85
3220 4322 8.722622 TCTTTTTACTCCTAGAAGAAGAAGGA 57.277 34.615 0.00 0.00 37.07 3.36
3221 4323 9.155785 TCTTTTTACTCCTAGAAGAAGAAGGAA 57.844 33.333 0.00 0.00 38.91 3.36
3222 4324 9.430623 CTTTTTACTCCTAGAAGAAGAAGGAAG 57.569 37.037 0.00 0.00 38.91 3.46
3223 4325 7.483580 TTTACTCCTAGAAGAAGAAGGAAGG 57.516 40.000 0.00 0.00 38.91 3.46
3224 4326 5.278127 ACTCCTAGAAGAAGAAGGAAGGA 57.722 43.478 0.00 0.00 38.91 3.36
3225 4327 5.656420 ACTCCTAGAAGAAGAAGGAAGGAA 58.344 41.667 0.00 0.00 38.91 3.36
3226 4328 5.719563 ACTCCTAGAAGAAGAAGGAAGGAAG 59.280 44.000 0.00 0.00 38.91 3.46
3227 4329 5.026790 TCCTAGAAGAAGAAGGAAGGAAGG 58.973 45.833 0.00 0.00 36.47 3.46
3228 4330 3.712016 AGAAGAAGAAGGAAGGAAGGC 57.288 47.619 0.00 0.00 0.00 4.35
3229 4331 2.307392 AGAAGAAGAAGGAAGGAAGGCC 59.693 50.000 0.00 0.00 0.00 5.19
3231 4333 1.912731 AGAAGAAGGAAGGAAGGCCTC 59.087 52.381 5.23 0.00 46.28 4.70
3232 4334 0.615850 AAGAAGGAAGGAAGGCCTCG 59.384 55.000 5.23 0.00 46.28 4.63
3233 4335 1.222113 GAAGGAAGGAAGGCCTCGG 59.778 63.158 5.23 0.00 46.28 4.63
3234 4336 2.878089 GAAGGAAGGAAGGCCTCGGC 62.878 65.000 5.23 0.00 46.28 5.54
3252 4354 4.436998 CCCGACGGCAGAGGACAC 62.437 72.222 8.86 0.00 0.00 3.67
3253 4355 3.374402 CCGACGGCAGAGGACACT 61.374 66.667 0.00 0.00 0.00 3.55
3254 4356 2.126307 CGACGGCAGAGGACACTG 60.126 66.667 0.00 0.00 40.43 3.66
3261 4363 3.639099 CAGAGGACACTGCCACATT 57.361 52.632 0.00 0.00 0.00 2.71
3262 4364 1.162698 CAGAGGACACTGCCACATTG 58.837 55.000 0.00 0.00 0.00 2.82
3263 4365 0.037303 AGAGGACACTGCCACATTGG 59.963 55.000 0.00 0.00 41.55 3.16
3264 4366 0.250901 GAGGACACTGCCACATTGGT 60.251 55.000 0.00 0.00 40.46 3.67
3265 4367 1.003118 GAGGACACTGCCACATTGGTA 59.997 52.381 0.00 0.00 40.46 3.25
3266 4368 1.635487 AGGACACTGCCACATTGGTAT 59.365 47.619 0.00 0.00 40.46 2.73
3267 4369 2.017049 GGACACTGCCACATTGGTATC 58.983 52.381 0.00 0.00 40.46 2.24
3268 4370 2.017049 GACACTGCCACATTGGTATCC 58.983 52.381 0.00 0.00 40.46 2.59
3269 4371 1.354031 ACACTGCCACATTGGTATCCA 59.646 47.619 0.00 0.00 40.46 3.41
3270 4372 2.025037 ACACTGCCACATTGGTATCCAT 60.025 45.455 0.00 0.00 40.46 3.41
3271 4373 2.620115 CACTGCCACATTGGTATCCATC 59.380 50.000 0.00 0.00 40.46 3.51
3272 4374 1.875514 CTGCCACATTGGTATCCATCG 59.124 52.381 0.00 0.00 40.46 3.84
3273 4375 1.238439 GCCACATTGGTATCCATCGG 58.762 55.000 0.00 0.00 40.46 4.18
3274 4376 1.476833 GCCACATTGGTATCCATCGGT 60.477 52.381 0.00 0.00 40.46 4.69
3275 4377 2.494059 CCACATTGGTATCCATCGGTC 58.506 52.381 0.00 0.00 31.53 4.79
3276 4378 2.494059 CACATTGGTATCCATCGGTCC 58.506 52.381 0.00 0.00 31.53 4.46
3277 4379 2.104792 CACATTGGTATCCATCGGTCCT 59.895 50.000 0.00 0.00 31.53 3.85
3278 4380 2.368875 ACATTGGTATCCATCGGTCCTC 59.631 50.000 0.00 0.00 31.53 3.71
3279 4381 1.037493 TTGGTATCCATCGGTCCTCG 58.963 55.000 0.00 0.00 40.90 4.63
3280 4382 1.289380 GGTATCCATCGGTCCTCGC 59.711 63.158 0.00 0.00 39.05 5.03
3281 4383 1.289380 GTATCCATCGGTCCTCGCC 59.711 63.158 0.00 0.00 39.05 5.54
3354 4556 2.232941 GTGGACTCGTAGATGGTTGGAA 59.767 50.000 0.00 0.00 33.89 3.53
3356 4558 3.517901 TGGACTCGTAGATGGTTGGAAAT 59.482 43.478 0.00 0.00 33.89 2.17
3444 4646 8.990030 AGTTTGCCATAAGAACTACCGGTACG 62.990 46.154 11.16 9.74 40.93 3.67
3544 4750 1.310904 GCTCTACCTCTTCGACGGAT 58.689 55.000 0.00 0.00 0.00 4.18
3585 4791 4.028131 ACGTGAACTTGGGGATACATCTA 58.972 43.478 0.00 0.00 39.74 1.98
3629 4835 6.392625 TCTCGCTGCTTTGTATTATACTCT 57.607 37.500 3.92 0.00 0.00 3.24
3630 4836 6.806751 TCTCGCTGCTTTGTATTATACTCTT 58.193 36.000 3.92 0.00 0.00 2.85
3633 4839 6.479001 TCGCTGCTTTGTATTATACTCTTTCC 59.521 38.462 3.92 0.00 0.00 3.13
3652 4858 1.403249 CCGTCCGGAATTACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
3657 4863 4.797349 GTCCGGAATTACTTGTCGTAGAAG 59.203 45.833 5.23 0.00 39.69 2.85
3659 4865 5.647658 TCCGGAATTACTTGTCGTAGAAGTA 59.352 40.000 0.00 0.00 39.69 2.24
3660 4866 5.970023 CCGGAATTACTTGTCGTAGAAGTAG 59.030 44.000 0.00 0.00 39.69 2.57
3662 4868 7.416022 CGGAATTACTTGTCGTAGAAGTAGAT 58.584 38.462 0.00 0.00 39.69 1.98
3663 4869 7.376336 CGGAATTACTTGTCGTAGAAGTAGATG 59.624 40.741 0.00 0.00 39.69 2.90
3664 4870 8.189460 GGAATTACTTGTCGTAGAAGTAGATGT 58.811 37.037 0.00 0.00 39.69 3.06
3702 4908 8.697846 TTTAGTTCTACGTACATCCATTTCTG 57.302 34.615 0.00 0.00 0.00 3.02
3703 4909 6.282199 AGTTCTACGTACATCCATTTCTGT 57.718 37.500 0.00 0.00 0.00 3.41
3704 4910 6.100004 AGTTCTACGTACATCCATTTCTGTG 58.900 40.000 0.00 0.00 0.00 3.66
3705 4911 5.907866 TCTACGTACATCCATTTCTGTGA 57.092 39.130 0.00 0.00 0.00 3.58
3706 4912 5.647589 TCTACGTACATCCATTTCTGTGAC 58.352 41.667 0.00 0.00 0.00 3.67
3707 4913 4.265904 ACGTACATCCATTTCTGTGACA 57.734 40.909 0.00 0.00 0.00 3.58
3708 4914 4.245660 ACGTACATCCATTTCTGTGACAG 58.754 43.478 6.18 6.18 0.00 3.51
3709 4915 3.618594 CGTACATCCATTTCTGTGACAGG 59.381 47.826 13.33 0.00 31.51 4.00
3710 4916 3.795688 ACATCCATTTCTGTGACAGGT 57.204 42.857 13.33 0.00 31.51 4.00
3711 4917 4.908601 ACATCCATTTCTGTGACAGGTA 57.091 40.909 13.33 1.28 31.51 3.08
3712 4918 5.241403 ACATCCATTTCTGTGACAGGTAA 57.759 39.130 13.33 8.03 31.51 2.85
3713 4919 5.819991 ACATCCATTTCTGTGACAGGTAAT 58.180 37.500 13.33 9.95 31.51 1.89
3714 4920 6.248433 ACATCCATTTCTGTGACAGGTAATT 58.752 36.000 13.33 0.00 31.51 1.40
3715 4921 6.375455 ACATCCATTTCTGTGACAGGTAATTC 59.625 38.462 13.33 0.00 31.51 2.17
3716 4922 4.935205 TCCATTTCTGTGACAGGTAATTCG 59.065 41.667 13.33 5.98 31.51 3.34
3746 4953 3.285484 GGAGTACTAGATGACCGGTTGA 58.715 50.000 9.42 0.00 0.00 3.18
3753 4960 0.804989 GATGACCGGTTGAGCCAAAG 59.195 55.000 9.42 0.00 36.97 2.77
3797 5006 6.875195 ACCATGAGTGCTTTGAAAATAATTGG 59.125 34.615 0.00 0.00 0.00 3.16
3799 5008 7.063780 CCATGAGTGCTTTGAAAATAATTGGAC 59.936 37.037 0.00 0.00 0.00 4.02
3833 5044 2.565834 TGGTGTGAGGAACTACTTAGGC 59.434 50.000 0.00 0.00 41.55 3.93
3911 5126 2.380660 ACTTAACGTGCGCAATTTGTG 58.619 42.857 14.00 5.58 0.00 3.33
4031 5246 4.700692 GGTTCTTCTTAGGGATTCACCAAC 59.299 45.833 0.00 0.00 41.20 3.77
4035 5250 7.510675 TCTTCTTAGGGATTCACCAACTATT 57.489 36.000 0.00 0.00 41.20 1.73
4039 5254 7.792032 TCTTAGGGATTCACCAACTATTAGTG 58.208 38.462 0.00 0.00 41.20 2.74
4099 5316 4.400884 AGGAACTAGCTACATCACACAGAG 59.599 45.833 0.00 0.00 36.02 3.35
4112 5329 2.093075 CACACAGAGAGGCTCCATCATT 60.093 50.000 11.71 0.00 0.00 2.57
4125 5342 4.060900 CTCCATCATTCGTGAAATCGGAT 58.939 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.260355 CGGGGCTGCGATGCAATG 62.260 66.667 0.00 0.00 38.41 2.82
17 18 4.676586 CCGTTCAACCGCGTTGCC 62.677 66.667 4.92 3.61 42.55 4.52
18 19 3.944233 ACCGTTCAACCGCGTTGC 61.944 61.111 4.92 0.00 42.55 4.17
19 20 2.052590 CACCGTTCAACCGCGTTG 60.053 61.111 4.92 10.14 43.99 4.10
20 21 3.944233 GCACCGTTCAACCGCGTT 61.944 61.111 4.92 0.00 0.00 4.84
21 22 4.903010 AGCACCGTTCAACCGCGT 62.903 61.111 4.92 0.00 0.00 6.01
22 23 4.368808 CAGCACCGTTCAACCGCG 62.369 66.667 0.00 0.00 0.00 6.46
23 24 4.683334 GCAGCACCGTTCAACCGC 62.683 66.667 0.00 0.00 0.00 5.68
24 25 2.513065 GATGCAGCACCGTTCAACCG 62.513 60.000 0.00 0.00 0.00 4.44
25 26 1.210155 GATGCAGCACCGTTCAACC 59.790 57.895 0.00 0.00 0.00 3.77
26 27 1.154413 CGATGCAGCACCGTTCAAC 60.154 57.895 0.00 0.00 0.00 3.18
27 28 2.324330 CCGATGCAGCACCGTTCAA 61.324 57.895 8.75 0.00 0.00 2.69
28 29 2.741985 CCGATGCAGCACCGTTCA 60.742 61.111 8.75 0.00 0.00 3.18
29 30 2.434185 TCCGATGCAGCACCGTTC 60.434 61.111 8.75 0.00 0.00 3.95
30 31 2.742372 GTCCGATGCAGCACCGTT 60.742 61.111 8.75 0.00 0.00 4.44
31 32 4.002506 TGTCCGATGCAGCACCGT 62.003 61.111 8.75 0.00 0.00 4.83
32 33 3.490759 GTGTCCGATGCAGCACCG 61.491 66.667 0.55 0.55 0.00 4.94
33 34 3.127533 GGTGTCCGATGCAGCACC 61.128 66.667 1.53 7.06 43.52 5.01
54 55 2.505498 CGTGACACCGCATAGACGC 61.505 63.158 0.00 0.00 0.00 5.19
55 56 0.861866 CTCGTGACACCGCATAGACG 60.862 60.000 0.00 0.00 0.00 4.18
56 57 0.170561 ACTCGTGACACCGCATAGAC 59.829 55.000 0.00 0.00 0.00 2.59
57 58 0.170339 CACTCGTGACACCGCATAGA 59.830 55.000 0.00 0.00 0.00 1.98
58 59 1.413767 GCACTCGTGACACCGCATAG 61.414 60.000 0.00 0.00 0.00 2.23
59 60 1.445410 GCACTCGTGACACCGCATA 60.445 57.895 0.00 0.00 0.00 3.14
60 61 2.738521 GCACTCGTGACACCGCAT 60.739 61.111 0.00 0.00 0.00 4.73
61 62 4.961511 GGCACTCGTGACACCGCA 62.962 66.667 0.00 0.00 38.82 5.69
64 65 4.961511 TGCGGCACTCGTGACACC 62.962 66.667 0.00 0.00 38.95 4.16
65 66 2.730672 GATGCGGCACTCGTGACAC 61.731 63.158 4.03 0.00 38.95 3.67
66 67 2.432456 GATGCGGCACTCGTGACA 60.432 61.111 4.03 0.00 38.95 3.58
67 68 3.545481 CGATGCGGCACTCGTGAC 61.545 66.667 19.55 0.00 41.72 3.67
139 140 8.395633 GCTTAATTAAGGCGAAAGATTTCAGTA 58.604 33.333 23.37 0.00 34.13 2.74
140 141 7.121315 AGCTTAATTAAGGCGAAAGATTTCAGT 59.879 33.333 23.37 0.00 34.13 3.41
141 142 7.475840 AGCTTAATTAAGGCGAAAGATTTCAG 58.524 34.615 23.37 0.00 34.13 3.02
142 143 7.391148 AGCTTAATTAAGGCGAAAGATTTCA 57.609 32.000 23.37 0.00 34.13 2.69
143 144 7.968405 TGAAGCTTAATTAAGGCGAAAGATTTC 59.032 33.333 23.37 13.86 33.95 2.17
144 145 7.826690 TGAAGCTTAATTAAGGCGAAAGATTT 58.173 30.769 23.37 7.29 33.95 2.17
145 146 7.391148 TGAAGCTTAATTAAGGCGAAAGATT 57.609 32.000 23.37 6.26 33.95 2.40
146 147 7.573968 ATGAAGCTTAATTAAGGCGAAAGAT 57.426 32.000 23.37 0.00 33.95 2.40
147 148 7.254795 GCTATGAAGCTTAATTAAGGCGAAAGA 60.255 37.037 23.37 6.54 45.85 2.52
148 149 6.853362 GCTATGAAGCTTAATTAAGGCGAAAG 59.147 38.462 23.37 12.91 45.85 2.62
149 150 6.725246 GCTATGAAGCTTAATTAAGGCGAAA 58.275 36.000 23.37 9.30 45.85 3.46
150 151 6.300354 GCTATGAAGCTTAATTAAGGCGAA 57.700 37.500 23.37 9.57 45.85 4.70
151 152 5.924475 GCTATGAAGCTTAATTAAGGCGA 57.076 39.130 23.37 8.58 45.85 5.54
165 166 3.462021 GCCCAAGACTAGTGCTATGAAG 58.538 50.000 0.00 0.00 0.00 3.02
166 167 2.170607 GGCCCAAGACTAGTGCTATGAA 59.829 50.000 0.00 0.00 0.00 2.57
167 168 1.762957 GGCCCAAGACTAGTGCTATGA 59.237 52.381 0.00 0.00 0.00 2.15
168 169 1.539065 CGGCCCAAGACTAGTGCTATG 60.539 57.143 0.00 0.00 0.00 2.23
169 170 0.753262 CGGCCCAAGACTAGTGCTAT 59.247 55.000 0.00 0.00 0.00 2.97
170 171 1.327690 CCGGCCCAAGACTAGTGCTA 61.328 60.000 0.00 0.00 0.00 3.49
171 172 2.660064 CCGGCCCAAGACTAGTGCT 61.660 63.158 0.00 0.00 0.00 4.40
172 173 2.125106 CCGGCCCAAGACTAGTGC 60.125 66.667 0.00 0.00 0.00 4.40
173 174 2.584608 CCCGGCCCAAGACTAGTG 59.415 66.667 0.00 0.00 0.00 2.74
174 175 2.687566 CCCCGGCCCAAGACTAGT 60.688 66.667 0.00 0.00 0.00 2.57
175 176 2.365105 TCCCCGGCCCAAGACTAG 60.365 66.667 0.00 0.00 0.00 2.57
176 177 2.365105 CTCCCCGGCCCAAGACTA 60.365 66.667 0.00 0.00 0.00 2.59
179 180 4.995058 AACCTCCCCGGCCCAAGA 62.995 66.667 0.00 0.00 35.61 3.02
180 181 3.938637 GAAACCTCCCCGGCCCAAG 62.939 68.421 0.00 0.00 35.61 3.61
181 182 3.974293 GAAACCTCCCCGGCCCAA 61.974 66.667 0.00 0.00 35.61 4.12
182 183 4.995058 AGAAACCTCCCCGGCCCA 62.995 66.667 0.00 0.00 35.61 5.36
183 184 4.426313 CAGAAACCTCCCCGGCCC 62.426 72.222 0.00 0.00 35.61 5.80
186 187 3.330720 AGGCAGAAACCTCCCCGG 61.331 66.667 0.00 0.00 33.62 5.73
192 193 2.587522 GTTTCCTTGAGGCAGAAACCT 58.412 47.619 3.98 0.00 42.17 3.50
194 195 1.266989 CGGTTTCCTTGAGGCAGAAAC 59.733 52.381 6.35 6.35 45.49 2.78
195 196 1.604604 CGGTTTCCTTGAGGCAGAAA 58.395 50.000 0.00 0.00 34.44 2.52
196 197 0.889186 GCGGTTTCCTTGAGGCAGAA 60.889 55.000 0.00 0.00 34.44 3.02
197 198 1.302511 GCGGTTTCCTTGAGGCAGA 60.303 57.895 0.00 0.00 34.44 4.26
198 199 2.680913 CGCGGTTTCCTTGAGGCAG 61.681 63.158 0.00 0.00 34.44 4.85
199 200 2.668212 CGCGGTTTCCTTGAGGCA 60.668 61.111 0.00 0.00 34.44 4.75
200 201 3.431725 CCGCGGTTTCCTTGAGGC 61.432 66.667 19.50 0.00 34.44 4.70
201 202 2.746277 CCCGCGGTTTCCTTGAGG 60.746 66.667 26.12 0.00 0.00 3.86
202 203 2.032071 ACCCGCGGTTTCCTTGAG 59.968 61.111 26.12 7.62 27.29 3.02
203 204 2.281208 CACCCGCGGTTTCCTTGA 60.281 61.111 26.12 0.00 31.02 3.02
204 205 2.593436 ACACCCGCGGTTTCCTTG 60.593 61.111 26.12 12.85 31.02 3.61
205 206 2.593436 CACACCCGCGGTTTCCTT 60.593 61.111 26.12 0.00 31.02 3.36
206 207 4.636435 CCACACCCGCGGTTTCCT 62.636 66.667 26.12 0.00 31.02 3.36
216 217 4.083862 GAGGAGTCGCCCACACCC 62.084 72.222 0.00 0.00 36.41 4.61
217 218 2.997897 AGAGGAGTCGCCCACACC 60.998 66.667 0.00 0.00 37.37 4.16
218 219 1.816863 TTCAGAGGAGTCGCCCACAC 61.817 60.000 0.00 0.00 37.37 3.82
219 220 0.904865 ATTCAGAGGAGTCGCCCACA 60.905 55.000 0.00 0.00 37.37 4.17
220 221 0.250513 AATTCAGAGGAGTCGCCCAC 59.749 55.000 0.00 0.00 37.37 4.61
221 222 0.537188 GAATTCAGAGGAGTCGCCCA 59.463 55.000 0.00 0.00 37.37 5.36
222 223 0.827368 AGAATTCAGAGGAGTCGCCC 59.173 55.000 8.44 0.00 37.37 6.13
223 224 1.478510 TGAGAATTCAGAGGAGTCGCC 59.521 52.381 8.44 0.00 0.00 5.54
224 225 2.949451 TGAGAATTCAGAGGAGTCGC 57.051 50.000 8.44 0.00 0.00 5.19
225 226 5.003692 TGATTGAGAATTCAGAGGAGTCG 57.996 43.478 8.44 0.00 34.15 4.18
226 227 5.990996 GGATGATTGAGAATTCAGAGGAGTC 59.009 44.000 8.44 0.00 34.15 3.36
227 228 5.427806 TGGATGATTGAGAATTCAGAGGAGT 59.572 40.000 8.44 0.00 34.15 3.85
228 229 5.926663 TGGATGATTGAGAATTCAGAGGAG 58.073 41.667 8.44 0.00 34.15 3.69
247 248 8.237811 ACAAACAGTCTCAAAAACTAATGGAT 57.762 30.769 0.00 0.00 0.00 3.41
271 272 6.094061 ACGCATGAAGAAAGAACTACTCTAC 58.906 40.000 0.00 0.00 32.46 2.59
275 276 4.883083 TGACGCATGAAGAAAGAACTACT 58.117 39.130 0.00 0.00 0.00 2.57
276 277 4.686554 ACTGACGCATGAAGAAAGAACTAC 59.313 41.667 0.00 0.00 0.00 2.73
277 278 4.883083 ACTGACGCATGAAGAAAGAACTA 58.117 39.130 0.00 0.00 0.00 2.24
278 279 3.733337 ACTGACGCATGAAGAAAGAACT 58.267 40.909 0.00 0.00 0.00 3.01
279 280 3.743396 AGACTGACGCATGAAGAAAGAAC 59.257 43.478 0.00 0.00 0.00 3.01
280 281 3.990469 GAGACTGACGCATGAAGAAAGAA 59.010 43.478 0.00 0.00 0.00 2.52
281 282 3.256879 AGAGACTGACGCATGAAGAAAGA 59.743 43.478 0.00 0.00 0.00 2.52
282 283 3.583806 AGAGACTGACGCATGAAGAAAG 58.416 45.455 0.00 0.00 0.00 2.62
283 284 3.667497 AGAGACTGACGCATGAAGAAA 57.333 42.857 0.00 0.00 0.00 2.52
289 290 0.720027 CAGCAAGAGACTGACGCATG 59.280 55.000 0.00 0.00 37.32 4.06
293 294 2.360553 ATCACAGCAAGAGACTGACG 57.639 50.000 0.00 0.00 38.55 4.35
299 300 4.313282 CAGTTCAGAATCACAGCAAGAGA 58.687 43.478 0.00 0.00 0.00 3.10
300 301 3.436015 CCAGTTCAGAATCACAGCAAGAG 59.564 47.826 0.00 0.00 0.00 2.85
350 351 1.873591 GGCACTGTGTAACCACTTCTG 59.126 52.381 9.86 0.00 42.34 3.02
369 370 0.328258 ATCTTGGTTTCCCGTCCAGG 59.672 55.000 0.00 0.00 40.63 4.45
375 376 3.831715 GAAACTGATCTTGGTTTCCCG 57.168 47.619 19.18 0.00 42.91 5.14
389 391 3.304928 GCAGTGAATTGGGTGAGAAACTG 60.305 47.826 0.00 0.00 37.45 3.16
397 399 0.831288 TTGGGGCAGTGAATTGGGTG 60.831 55.000 0.00 0.00 0.00 4.61
401 403 1.135315 CACGATTGGGGCAGTGAATTG 60.135 52.381 0.00 0.00 36.79 2.32
406 408 2.360350 AGCACGATTGGGGCAGTG 60.360 61.111 0.00 0.00 37.63 3.66
410 412 2.229690 AATTGCAGCACGATTGGGGC 62.230 55.000 0.00 0.00 30.65 5.80
413 415 0.179129 GGGAATTGCAGCACGATTGG 60.179 55.000 0.00 0.00 32.10 3.16
449 503 1.058404 GTTCGTTCCCGTTCGAGAAG 58.942 55.000 0.00 0.00 37.38 2.85
460 514 3.952628 CTCTGGGGCCGTTCGTTCC 62.953 68.421 0.00 0.00 0.00 3.62
461 515 2.434359 CTCTGGGGCCGTTCGTTC 60.434 66.667 0.00 0.00 0.00 3.95
462 516 2.047213 TTTCTCTGGGGCCGTTCGTT 62.047 55.000 0.00 0.00 0.00 3.85
476 530 1.294857 GCCAGCTCTCCGAATTTCTC 58.705 55.000 0.00 0.00 0.00 2.87
477 531 0.615331 TGCCAGCTCTCCGAATTTCT 59.385 50.000 0.00 0.00 0.00 2.52
485 539 2.527951 ATCCGTTGTGCCAGCTCTCC 62.528 60.000 0.00 0.00 0.00 3.71
489 543 2.045926 GGATCCGTTGTGCCAGCT 60.046 61.111 0.00 0.00 0.00 4.24
514 568 4.025647 GGAGTACAAAATAGACGCTCATGC 60.026 45.833 0.00 0.00 0.00 4.06
533 587 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
534 588 8.308207 GGCTCTTATATTAGTTTACAGAGGGAG 58.692 40.741 0.00 0.00 0.00 4.30
535 589 8.011290 AGGCTCTTATATTAGTTTACAGAGGGA 58.989 37.037 0.00 0.00 0.00 4.20
536 590 8.196378 AGGCTCTTATATTAGTTTACAGAGGG 57.804 38.462 0.00 0.00 0.00 4.30
586 640 9.490379 CCCTTCGTAAACTAATATAAGAGCATT 57.510 33.333 0.00 0.00 0.00 3.56
587 641 8.867097 TCCCTTCGTAAACTAATATAAGAGCAT 58.133 33.333 0.00 0.00 0.00 3.79
588 642 8.241497 TCCCTTCGTAAACTAATATAAGAGCA 57.759 34.615 0.00 0.00 0.00 4.26
589 643 8.358895 ACTCCCTTCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
595 649 9.813446 CAAACTACTCCCTTCGTAAACTAATAT 57.187 33.333 0.00 0.00 0.00 1.28
596 650 8.806146 ACAAACTACTCCCTTCGTAAACTAATA 58.194 33.333 0.00 0.00 0.00 0.98
597 651 7.674120 ACAAACTACTCCCTTCGTAAACTAAT 58.326 34.615 0.00 0.00 0.00 1.73
598 652 7.054491 ACAAACTACTCCCTTCGTAAACTAA 57.946 36.000 0.00 0.00 0.00 2.24
599 653 6.655078 ACAAACTACTCCCTTCGTAAACTA 57.345 37.500 0.00 0.00 0.00 2.24
600 654 5.541953 ACAAACTACTCCCTTCGTAAACT 57.458 39.130 0.00 0.00 0.00 2.66
601 655 6.037500 ACAAACAAACTACTCCCTTCGTAAAC 59.962 38.462 0.00 0.00 0.00 2.01
602 656 6.114767 ACAAACAAACTACTCCCTTCGTAAA 58.885 36.000 0.00 0.00 0.00 2.01
603 657 5.673514 ACAAACAAACTACTCCCTTCGTAA 58.326 37.500 0.00 0.00 0.00 3.18
604 658 5.280654 ACAAACAAACTACTCCCTTCGTA 57.719 39.130 0.00 0.00 0.00 3.43
605 659 4.146745 ACAAACAAACTACTCCCTTCGT 57.853 40.909 0.00 0.00 0.00 3.85
606 660 5.163693 ACAAACAAACAAACTACTCCCTTCG 60.164 40.000 0.00 0.00 0.00 3.79
607 661 6.203808 ACAAACAAACAAACTACTCCCTTC 57.796 37.500 0.00 0.00 0.00 3.46
608 662 6.599356 AACAAACAAACAAACTACTCCCTT 57.401 33.333 0.00 0.00 0.00 3.95
609 663 6.014925 ACAAACAAACAAACAAACTACTCCCT 60.015 34.615 0.00 0.00 0.00 4.20
610 664 6.160684 ACAAACAAACAAACAAACTACTCCC 58.839 36.000 0.00 0.00 0.00 4.30
611 665 7.646446 AACAAACAAACAAACAAACTACTCC 57.354 32.000 0.00 0.00 0.00 3.85
612 666 8.544597 ACAAACAAACAAACAAACAAACTACTC 58.455 29.630 0.00 0.00 0.00 2.59
613 667 8.426881 ACAAACAAACAAACAAACAAACTACT 57.573 26.923 0.00 0.00 0.00 2.57
614 668 9.491934 AAACAAACAAACAAACAAACAAACTAC 57.508 25.926 0.00 0.00 0.00 2.73
615 669 9.704098 GAAACAAACAAACAAACAAACAAACTA 57.296 25.926 0.00 0.00 0.00 2.24
616 670 7.698550 GGAAACAAACAAACAAACAAACAAACT 59.301 29.630 0.00 0.00 0.00 2.66
617 671 7.698550 AGGAAACAAACAAACAAACAAACAAAC 59.301 29.630 0.00 0.00 0.00 2.93
618 672 7.762382 AGGAAACAAACAAACAAACAAACAAA 58.238 26.923 0.00 0.00 0.00 2.83
619 673 7.281100 AGAGGAAACAAACAAACAAACAAACAA 59.719 29.630 0.00 0.00 0.00 2.83
620 674 6.763610 AGAGGAAACAAACAAACAAACAAACA 59.236 30.769 0.00 0.00 0.00 2.83
621 675 7.068955 CAGAGGAAACAAACAAACAAACAAAC 58.931 34.615 0.00 0.00 0.00 2.93
622 676 6.763610 ACAGAGGAAACAAACAAACAAACAAA 59.236 30.769 0.00 0.00 0.00 2.83
623 677 6.284459 ACAGAGGAAACAAACAAACAAACAA 58.716 32.000 0.00 0.00 0.00 2.83
624 678 5.848406 ACAGAGGAAACAAACAAACAAACA 58.152 33.333 0.00 0.00 0.00 2.83
645 699 1.201181 ACGCAACAGCAGAAACAAACA 59.799 42.857 0.00 0.00 0.00 2.83
646 707 1.583404 CACGCAACAGCAGAAACAAAC 59.417 47.619 0.00 0.00 0.00 2.93
648 709 1.090728 TCACGCAACAGCAGAAACAA 58.909 45.000 0.00 0.00 0.00 2.83
650 711 2.286950 TGATTCACGCAACAGCAGAAAC 60.287 45.455 0.00 0.00 0.00 2.78
664 725 6.145048 CAGCAGGACAAAAGAAATTGATTCAC 59.855 38.462 0.00 0.00 40.72 3.18
666 727 5.119743 GCAGCAGGACAAAAGAAATTGATTC 59.880 40.000 0.00 0.00 38.39 2.52
697 758 4.761739 TGACTGATTGATTGGAGTCAAACC 59.238 41.667 0.00 0.00 41.38 3.27
717 778 2.945668 AGCAGTTTTGGAAGAGTGTGAC 59.054 45.455 0.00 0.00 0.00 3.67
718 779 2.945008 CAGCAGTTTTGGAAGAGTGTGA 59.055 45.455 0.00 0.00 0.00 3.58
719 780 2.945008 TCAGCAGTTTTGGAAGAGTGTG 59.055 45.455 0.00 0.00 0.00 3.82
720 781 3.281727 TCAGCAGTTTTGGAAGAGTGT 57.718 42.857 0.00 0.00 0.00 3.55
733 794 8.909923 TCATCAATCAATAAATCAATCAGCAGT 58.090 29.630 0.00 0.00 0.00 4.40
814 898 0.907230 GAGGAAGGCCAGAGTGACCT 60.907 60.000 5.01 2.09 36.29 3.85
848 932 2.585869 ATTATTCAGCGCGCGACGG 61.586 57.895 37.18 24.32 43.93 4.79
855 939 1.529244 AGGCCCCATTATTCAGCGC 60.529 57.895 0.00 0.00 0.00 5.92
872 956 4.729918 GTGCTCCTGTGCCCCCAG 62.730 72.222 0.00 0.00 0.00 4.45
961 1053 1.166531 GCTCCCAAAACAGAGCGTGT 61.167 55.000 0.00 0.00 45.44 4.49
962 1054 1.576421 GCTCCCAAAACAGAGCGTG 59.424 57.895 0.00 0.00 45.44 5.34
963 1055 4.065110 GCTCCCAAAACAGAGCGT 57.935 55.556 0.00 0.00 45.44 5.07
980 1077 1.958205 GCCGCTGAATCCCGATCAG 60.958 63.158 0.00 0.00 45.65 2.90
1079 1182 4.211374 CGAAAGTTCCAAACTCACAGGTAG 59.789 45.833 0.00 0.00 41.91 3.18
1096 1199 2.069273 CAAGCTTCACCGATCGAAAGT 58.931 47.619 18.66 2.71 0.00 2.66
1097 1200 1.394917 CCAAGCTTCACCGATCGAAAG 59.605 52.381 18.66 16.91 0.00 2.62
1098 1201 1.270625 ACCAAGCTTCACCGATCGAAA 60.271 47.619 18.66 7.01 0.00 3.46
1099 1202 0.320374 ACCAAGCTTCACCGATCGAA 59.680 50.000 18.66 1.65 0.00 3.71
1100 1203 0.320374 AACCAAGCTTCACCGATCGA 59.680 50.000 18.66 0.00 0.00 3.59
1101 1204 0.443869 CAACCAAGCTTCACCGATCG 59.556 55.000 8.51 8.51 0.00 3.69
1102 1205 0.169009 GCAACCAAGCTTCACCGATC 59.831 55.000 0.00 0.00 0.00 3.69
1103 1206 0.537143 TGCAACCAAGCTTCACCGAT 60.537 50.000 0.00 0.00 34.99 4.18
1107 1210 2.514205 AACATGCAACCAAGCTTCAC 57.486 45.000 0.00 0.00 34.99 3.18
1122 1226 9.376075 CAGAGTAGAGACACAATATCAAAACAT 57.624 33.333 0.00 0.00 0.00 2.71
1125 1229 9.424319 GAACAGAGTAGAGACACAATATCAAAA 57.576 33.333 0.00 0.00 0.00 2.44
1132 1236 4.281941 TGCTGAACAGAGTAGAGACACAAT 59.718 41.667 5.97 0.00 0.00 2.71
1133 1237 3.636764 TGCTGAACAGAGTAGAGACACAA 59.363 43.478 5.97 0.00 0.00 3.33
1497 1616 4.087892 CAGCCTCCTCCACCACCG 62.088 72.222 0.00 0.00 0.00 4.94
1498 1617 4.416738 GCAGCCTCCTCCACCACC 62.417 72.222 0.00 0.00 0.00 4.61
1499 1618 4.767255 CGCAGCCTCCTCCACCAC 62.767 72.222 0.00 0.00 0.00 4.16
1573 1692 4.821589 CCAGGCCGCTTCGTCTCC 62.822 72.222 0.00 0.00 0.00 3.71
1735 1854 2.202878 GACCGCCGCTTGAGCATA 60.203 61.111 3.65 0.00 42.21 3.14
1915 2040 1.066143 TCCACCATCGCCTTCTTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
1918 2043 1.084370 CGTCCACCATCGCCTTCTTC 61.084 60.000 0.00 0.00 0.00 2.87
1957 2082 3.483587 ACCCACTGGTTCTGCGAT 58.516 55.556 0.00 0.00 44.75 4.58
2361 2493 1.340502 TGCTGGATTGTATTTGCCGGA 60.341 47.619 5.05 0.00 0.00 5.14
2364 2496 4.114794 GACATTGCTGGATTGTATTTGCC 58.885 43.478 0.00 0.00 0.00 4.52
2366 2505 5.957798 ACTGACATTGCTGGATTGTATTTG 58.042 37.500 0.00 0.00 0.00 2.32
2411 2552 1.401148 GCAGCAGCATGTCTGAAAGTG 60.401 52.381 17.76 10.86 45.72 3.16
2424 2565 0.038526 AGCACAAATTCAGCAGCAGC 60.039 50.000 0.00 0.00 42.56 5.25
2428 2593 3.243301 ACAGAACAGCACAAATTCAGCAG 60.243 43.478 0.00 0.00 0.00 4.24
2439 2604 1.398960 GCATGACGAACAGAACAGCAC 60.399 52.381 0.00 0.00 0.00 4.40
2440 2605 0.867746 GCATGACGAACAGAACAGCA 59.132 50.000 0.00 0.00 0.00 4.41
2442 2607 2.138320 ACTGCATGACGAACAGAACAG 58.862 47.619 0.00 1.51 35.38 3.16
2450 2622 4.371786 GGAGATATGAACTGCATGACGAA 58.628 43.478 0.00 0.00 37.87 3.85
2452 2624 3.062763 GGGAGATATGAACTGCATGACG 58.937 50.000 0.00 0.00 37.87 4.35
2571 2744 0.606604 TCCGGTTGTAGCTGAGGTTC 59.393 55.000 0.00 0.00 0.00 3.62
2645 2866 4.940654 AGAAGCAGGATTTACTGAAGAAGC 59.059 41.667 0.00 0.00 40.97 3.86
2663 2889 2.056094 AAATGTTGCTTCGCAGAAGC 57.944 45.000 26.05 26.05 45.90 3.86
2664 2890 3.180980 CACAAAATGTTGCTTCGCAGAAG 59.819 43.478 12.17 12.17 40.61 2.85
2671 3762 6.144402 CAGGATTGTACACAAAATGTTGCTTC 59.856 38.462 0.00 0.00 43.19 3.86
2672 3763 5.984926 CAGGATTGTACACAAAATGTTGCTT 59.015 36.000 0.00 0.00 43.19 3.91
2689 3780 2.889045 CCCACATCCATAAGCAGGATTG 59.111 50.000 0.00 0.00 43.21 2.67
2703 3794 1.202855 CCCTGATCCATCACCCACATC 60.203 57.143 0.00 0.00 32.50 3.06
2710 3809 0.531532 CGACAGCCCTGATCCATCAC 60.532 60.000 1.69 0.00 32.50 3.06
2815 3917 3.551496 TTGAAGCCCAGGTCCAGCG 62.551 63.158 0.00 0.00 0.00 5.18
2978 4080 1.308783 GCTGCTTGTTGAGGTAGGCC 61.309 60.000 0.00 0.00 0.00 5.19
3182 4284 8.785329 AGGAGTAAAAAGAAGAGTTGATCATC 57.215 34.615 0.00 0.00 0.00 2.92
3184 4286 9.090103 TCTAGGAGTAAAAAGAAGAGTTGATCA 57.910 33.333 0.00 0.00 0.00 2.92
3185 4287 9.930693 TTCTAGGAGTAAAAAGAAGAGTTGATC 57.069 33.333 0.00 0.00 0.00 2.92
3186 4288 9.936759 CTTCTAGGAGTAAAAAGAAGAGTTGAT 57.063 33.333 5.23 0.00 45.01 2.57
3187 4289 9.144298 TCTTCTAGGAGTAAAAAGAAGAGTTGA 57.856 33.333 9.04 0.00 45.50 3.18
3194 4296 9.155785 TCCTTCTTCTTCTAGGAGTAAAAAGAA 57.844 33.333 10.65 10.65 33.23 2.52
3195 4297 8.722622 TCCTTCTTCTTCTAGGAGTAAAAAGA 57.277 34.615 0.00 0.00 33.23 2.52
3196 4298 9.430623 CTTCCTTCTTCTTCTAGGAGTAAAAAG 57.569 37.037 0.00 0.00 39.15 2.27
3197 4299 8.376270 CCTTCCTTCTTCTTCTAGGAGTAAAAA 58.624 37.037 0.00 0.00 39.15 1.94
3198 4300 7.733501 TCCTTCCTTCTTCTTCTAGGAGTAAAA 59.266 37.037 0.00 0.00 39.15 1.52
3199 4301 7.246763 TCCTTCCTTCTTCTTCTAGGAGTAAA 58.753 38.462 0.00 0.00 39.15 2.01
3200 4302 6.801953 TCCTTCCTTCTTCTTCTAGGAGTAA 58.198 40.000 0.00 0.00 39.15 2.24
3201 4303 6.404426 TCCTTCCTTCTTCTTCTAGGAGTA 57.596 41.667 0.00 0.00 39.15 2.59
3202 4304 5.278127 TCCTTCCTTCTTCTTCTAGGAGT 57.722 43.478 0.00 0.00 39.15 3.85
3203 4305 5.128663 CCTTCCTTCCTTCTTCTTCTAGGAG 59.871 48.000 0.00 0.00 39.15 3.69
3204 4306 5.026790 CCTTCCTTCCTTCTTCTTCTAGGA 58.973 45.833 0.00 0.00 36.31 2.94
3205 4307 4.383661 GCCTTCCTTCCTTCTTCTTCTAGG 60.384 50.000 0.00 0.00 0.00 3.02
3206 4308 4.383661 GGCCTTCCTTCCTTCTTCTTCTAG 60.384 50.000 0.00 0.00 0.00 2.43
3207 4309 3.519913 GGCCTTCCTTCCTTCTTCTTCTA 59.480 47.826 0.00 0.00 0.00 2.10
3208 4310 2.307392 GGCCTTCCTTCCTTCTTCTTCT 59.693 50.000 0.00 0.00 0.00 2.85
3209 4311 2.307392 AGGCCTTCCTTCCTTCTTCTTC 59.693 50.000 0.00 0.00 40.66 2.87
3210 4312 2.307392 GAGGCCTTCCTTCCTTCTTCTT 59.693 50.000 6.77 0.00 44.46 2.52
3211 4313 1.912731 GAGGCCTTCCTTCCTTCTTCT 59.087 52.381 6.77 0.00 44.46 2.85
3212 4314 1.406205 CGAGGCCTTCCTTCCTTCTTC 60.406 57.143 6.77 0.00 44.46 2.87
3213 4315 0.615850 CGAGGCCTTCCTTCCTTCTT 59.384 55.000 6.77 0.00 44.46 2.52
3214 4316 1.268283 CCGAGGCCTTCCTTCCTTCT 61.268 60.000 6.77 0.00 44.46 2.85
3215 4317 1.222113 CCGAGGCCTTCCTTCCTTC 59.778 63.158 6.77 0.00 44.46 3.46
3216 4318 2.972819 GCCGAGGCCTTCCTTCCTT 61.973 63.158 6.77 0.00 44.46 3.36
3217 4319 3.403558 GCCGAGGCCTTCCTTCCT 61.404 66.667 6.77 0.00 44.46 3.36
3235 4337 4.436998 GTGTCCTCTGCCGTCGGG 62.437 72.222 14.38 0.00 0.00 5.14
3236 4338 3.374402 AGTGTCCTCTGCCGTCGG 61.374 66.667 6.99 6.99 0.00 4.79
3237 4339 2.126307 CAGTGTCCTCTGCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
3243 4345 1.162698 CAATGTGGCAGTGTCCTCTG 58.837 55.000 0.00 0.00 38.35 3.35
3244 4346 0.037303 CCAATGTGGCAGTGTCCTCT 59.963 55.000 0.00 0.00 0.00 3.69
3245 4347 0.250901 ACCAATGTGGCAGTGTCCTC 60.251 55.000 0.00 0.00 42.67 3.71
3246 4348 1.064003 TACCAATGTGGCAGTGTCCT 58.936 50.000 0.00 0.00 42.67 3.85
3247 4349 2.017049 GATACCAATGTGGCAGTGTCC 58.983 52.381 0.00 0.00 42.67 4.02
3248 4350 2.017049 GGATACCAATGTGGCAGTGTC 58.983 52.381 0.00 0.00 42.67 3.67
3249 4351 1.354031 TGGATACCAATGTGGCAGTGT 59.646 47.619 0.00 0.00 42.67 3.55
3250 4352 2.127271 TGGATACCAATGTGGCAGTG 57.873 50.000 0.00 0.00 42.67 3.66
3251 4353 2.746142 CGATGGATACCAATGTGGCAGT 60.746 50.000 0.00 0.00 42.67 4.40
3252 4354 1.875514 CGATGGATACCAATGTGGCAG 59.124 52.381 0.00 0.00 42.67 4.85
3253 4355 1.476652 CCGATGGATACCAATGTGGCA 60.477 52.381 0.00 0.00 42.67 4.92
3254 4356 1.238439 CCGATGGATACCAATGTGGC 58.762 55.000 0.00 0.00 42.67 5.01
3255 4357 2.494059 GACCGATGGATACCAATGTGG 58.506 52.381 0.00 0.00 45.02 4.17
3256 4358 2.104792 AGGACCGATGGATACCAATGTG 59.895 50.000 0.00 0.00 36.95 3.21
3257 4359 2.368875 GAGGACCGATGGATACCAATGT 59.631 50.000 0.00 0.00 36.95 2.71
3258 4360 2.610479 CGAGGACCGATGGATACCAATG 60.610 54.545 0.00 0.00 41.76 2.82
3259 4361 1.618837 CGAGGACCGATGGATACCAAT 59.381 52.381 0.00 0.00 41.76 3.16
3260 4362 1.037493 CGAGGACCGATGGATACCAA 58.963 55.000 0.00 0.00 41.76 3.67
3261 4363 1.461091 GCGAGGACCGATGGATACCA 61.461 60.000 0.00 0.00 41.76 3.25
3262 4364 1.289380 GCGAGGACCGATGGATACC 59.711 63.158 0.00 0.00 41.76 2.73
3263 4365 1.289380 GGCGAGGACCGATGGATAC 59.711 63.158 0.00 0.00 41.76 2.24
3264 4366 3.773370 GGCGAGGACCGATGGATA 58.227 61.111 0.00 0.00 41.76 2.59
3302 4404 4.147449 TGATCAGCAGGACGGCGG 62.147 66.667 13.24 0.00 39.27 6.13
3303 4405 2.887568 GTGATCAGCAGGACGGCG 60.888 66.667 4.80 4.80 39.27 6.46
3304 4406 1.520342 GAGTGATCAGCAGGACGGC 60.520 63.158 0.00 0.00 0.00 5.68
3305 4407 0.179116 CAGAGTGATCAGCAGGACGG 60.179 60.000 0.00 0.00 0.00 4.79
3306 4408 0.179116 CCAGAGTGATCAGCAGGACG 60.179 60.000 0.00 0.00 0.00 4.79
3307 4409 0.177604 CCCAGAGTGATCAGCAGGAC 59.822 60.000 0.00 0.00 0.00 3.85
3308 4410 0.041684 TCCCAGAGTGATCAGCAGGA 59.958 55.000 0.00 0.00 0.00 3.86
3309 4411 0.464870 CTCCCAGAGTGATCAGCAGG 59.535 60.000 0.00 0.00 0.00 4.85
3310 4412 1.193323 ACTCCCAGAGTGATCAGCAG 58.807 55.000 0.00 0.00 41.76 4.24
3311 4413 1.277273 CAACTCCCAGAGTGATCAGCA 59.723 52.381 0.00 0.00 42.59 4.41
3312 4414 1.277557 ACAACTCCCAGAGTGATCAGC 59.722 52.381 0.00 0.00 42.59 4.26
3313 4415 2.301296 ACACAACTCCCAGAGTGATCAG 59.699 50.000 0.00 0.00 42.59 2.90
3354 4556 1.406539 GATGCTCCCAAACGCATGATT 59.593 47.619 0.00 0.00 46.06 2.57
3356 4558 1.031571 GGATGCTCCCAAACGCATGA 61.032 55.000 0.00 0.00 46.06 3.07
3359 4561 1.228398 TTGGATGCTCCCAAACGCA 60.228 52.632 7.73 0.00 42.75 5.24
3360 4562 1.508088 CTTGGATGCTCCCAAACGC 59.492 57.895 10.71 0.00 44.78 4.84
3361 4563 0.609131 ACCTTGGATGCTCCCAAACG 60.609 55.000 10.71 7.14 44.78 3.60
3362 4564 0.890683 CACCTTGGATGCTCCCAAAC 59.109 55.000 10.71 0.00 44.78 2.93
3389 4591 2.894126 TCGCAAATTTCTTGGGGCTAAA 59.106 40.909 0.00 0.00 33.77 1.85
3390 4592 2.491693 CTCGCAAATTTCTTGGGGCTAA 59.508 45.455 0.00 0.00 33.77 3.09
3391 4593 2.091541 CTCGCAAATTTCTTGGGGCTA 58.908 47.619 0.00 0.00 33.77 3.93
3392 4594 0.890683 CTCGCAAATTTCTTGGGGCT 59.109 50.000 0.00 0.00 33.77 5.19
3444 4646 2.032681 ACGCCAGTGCTTCCTTCC 59.967 61.111 0.00 0.00 34.43 3.46
3450 4655 2.906897 CAACCCACGCCAGTGCTT 60.907 61.111 0.00 0.00 46.62 3.91
3544 4750 5.105106 TCACGTTCTCAAGGGAATGCTAATA 60.105 40.000 1.87 0.00 36.12 0.98
3597 4803 3.568007 ACAAAGCAGCGAGATAACCAAAA 59.432 39.130 0.00 0.00 0.00 2.44
3633 4839 1.986698 ACGACAAGTAATTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
3669 4875 9.962783 GGATGTACGTAGAACTAAAATACATCT 57.037 33.333 22.74 0.00 43.38 2.90
3670 4876 9.740239 TGGATGTACGTAGAACTAAAATACATC 57.260 33.333 19.56 19.56 43.24 3.06
3675 4881 9.886132 AGAAATGGATGTACGTAGAACTAAAAT 57.114 29.630 0.00 0.00 0.00 1.82
3676 4882 9.146984 CAGAAATGGATGTACGTAGAACTAAAA 57.853 33.333 0.00 0.00 0.00 1.52
3677 4883 8.308931 ACAGAAATGGATGTACGTAGAACTAAA 58.691 33.333 0.00 0.00 0.00 1.85
3678 4884 7.758076 CACAGAAATGGATGTACGTAGAACTAA 59.242 37.037 0.00 0.00 0.00 2.24
3679 4885 7.121611 TCACAGAAATGGATGTACGTAGAACTA 59.878 37.037 0.00 0.00 0.00 2.24
3680 4886 6.071560 TCACAGAAATGGATGTACGTAGAACT 60.072 38.462 0.00 0.00 0.00 3.01
3681 4887 6.034683 GTCACAGAAATGGATGTACGTAGAAC 59.965 42.308 0.00 0.00 0.00 3.01
3682 4888 6.097356 GTCACAGAAATGGATGTACGTAGAA 58.903 40.000 0.00 0.00 0.00 2.10
3683 4889 5.184287 TGTCACAGAAATGGATGTACGTAGA 59.816 40.000 0.00 0.00 0.00 2.59
3684 4890 5.407502 TGTCACAGAAATGGATGTACGTAG 58.592 41.667 0.00 0.00 0.00 3.51
3685 4891 5.394224 TGTCACAGAAATGGATGTACGTA 57.606 39.130 0.00 0.00 0.00 3.57
3686 4892 4.245660 CTGTCACAGAAATGGATGTACGT 58.754 43.478 0.00 0.00 32.44 3.57
3687 4893 3.618594 CCTGTCACAGAAATGGATGTACG 59.381 47.826 6.30 0.00 32.44 3.67
3688 4894 4.579869 ACCTGTCACAGAAATGGATGTAC 58.420 43.478 6.30 0.00 32.44 2.90
3700 4906 2.618053 GTCCCGAATTACCTGTCACAG 58.382 52.381 0.00 0.00 0.00 3.66
3702 4908 1.636988 CGTCCCGAATTACCTGTCAC 58.363 55.000 0.00 0.00 0.00 3.67
3703 4909 0.533491 CCGTCCCGAATTACCTGTCA 59.467 55.000 0.00 0.00 0.00 3.58
3704 4910 0.819582 TCCGTCCCGAATTACCTGTC 59.180 55.000 0.00 0.00 0.00 3.51
3705 4911 0.822164 CTCCGTCCCGAATTACCTGT 59.178 55.000 0.00 0.00 0.00 4.00
3706 4912 0.104304 CCTCCGTCCCGAATTACCTG 59.896 60.000 0.00 0.00 0.00 4.00
3707 4913 1.047034 CCCTCCGTCCCGAATTACCT 61.047 60.000 0.00 0.00 0.00 3.08
3708 4914 1.044790 TCCCTCCGTCCCGAATTACC 61.045 60.000 0.00 0.00 0.00 2.85
3709 4915 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
3710 4916 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
3711 4917 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
3712 4918 0.754587 GTACTCCCTCCGTCCCGAAT 60.755 60.000 0.00 0.00 0.00 3.34
3713 4919 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3714 4920 0.982852 TAGTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
3715 4921 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14
3716 4922 0.842635 TCTAGTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
3753 4960 2.748058 TTTCAAGCGGGACTCTGCCC 62.748 60.000 0.00 0.00 46.14 5.36
3797 5006 5.465724 CCTCACACCAAAGTTACTAACAGTC 59.534 44.000 1.79 0.00 0.00 3.51
3799 5008 5.607477 TCCTCACACCAAAGTTACTAACAG 58.393 41.667 1.79 0.00 0.00 3.16
3812 5022 2.565834 GCCTAAGTAGTTCCTCACACCA 59.434 50.000 0.00 0.00 0.00 4.17
3813 5023 2.832733 AGCCTAAGTAGTTCCTCACACC 59.167 50.000 0.00 0.00 0.00 4.16
3825 5036 5.306160 AGAGTTTGTGTTGGTAGCCTAAGTA 59.694 40.000 0.00 0.00 0.00 2.24
3833 5044 9.796120 TTTGATTAAAAGAGTTTGTGTTGGTAG 57.204 29.630 0.00 0.00 0.00 3.18
3884 5095 8.007716 ACAAATTGCGCACGTTAAGTATATATC 58.992 33.333 11.12 0.00 0.00 1.63
3896 5111 0.590682 TGATCACAAATTGCGCACGT 59.409 45.000 11.12 1.63 0.00 4.49
4005 5220 5.163034 TGGTGAATCCCTAAGAAGAACCAAA 60.163 40.000 0.00 0.00 33.47 3.28
4006 5221 4.352595 TGGTGAATCCCTAAGAAGAACCAA 59.647 41.667 0.00 0.00 33.47 3.67
4031 5246 5.520288 GGTCTGTGTATGTGTGCACTAATAG 59.480 44.000 19.41 6.04 41.01 1.73
4035 5250 2.028476 GGGTCTGTGTATGTGTGCACTA 60.028 50.000 19.41 7.65 41.01 2.74
4039 5254 1.535462 GTTGGGTCTGTGTATGTGTGC 59.465 52.381 0.00 0.00 0.00 4.57
4084 5301 1.480137 AGCCTCTCTGTGTGATGTAGC 59.520 52.381 0.00 0.00 0.00 3.58
4085 5302 2.100584 GGAGCCTCTCTGTGTGATGTAG 59.899 54.545 0.00 0.00 0.00 2.74
4086 5303 2.103373 GGAGCCTCTCTGTGTGATGTA 58.897 52.381 0.00 0.00 0.00 2.29
4087 5304 0.901124 GGAGCCTCTCTGTGTGATGT 59.099 55.000 0.00 0.00 0.00 3.06
4099 5316 2.315925 TTCACGAATGATGGAGCCTC 57.684 50.000 0.00 0.00 33.85 4.70
4112 5329 4.311606 TCACAAAGAATCCGATTTCACGA 58.688 39.130 0.00 0.00 35.09 4.35
4125 5342 8.523915 AAGGCACATATTCATATCACAAAGAA 57.476 30.769 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.