Multiple sequence alignment - TraesCS5A01G475200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G475200 chr5A 100.000 3700 0 0 1 3700 650520056 650516357 0.000000e+00 6833.0
1 TraesCS5A01G475200 chr5D 86.632 2117 151 69 642 2694 522489922 522487874 0.000000e+00 2220.0
2 TraesCS5A01G475200 chr5D 79.878 656 90 33 2839 3482 519414524 519413899 3.390000e-120 442.0
3 TraesCS5A01G475200 chr5D 88.235 119 5 4 1962 2080 188473 188364 2.320000e-27 134.0
4 TraesCS5A01G475200 chr5B 86.963 2071 150 60 685 2686 658761469 658759450 0.000000e+00 2218.0
5 TraesCS5A01G475200 chr5B 79.699 399 38 25 310 693 658762916 658762546 7.930000e-62 248.0
6 TraesCS5A01G475200 chr5B 80.687 233 36 6 34 262 658763148 658762921 4.910000e-39 172.0
7 TraesCS5A01G475200 chr1B 83.032 719 94 21 2781 3482 288172245 288172952 8.720000e-176 627.0
8 TraesCS5A01G475200 chr1B 87.805 164 11 4 1928 2090 655099669 655099514 2.270000e-42 183.0
9 TraesCS5A01G475200 chr6B 82.893 719 93 18 2783 3482 514660420 514659713 1.460000e-173 619.0
10 TraesCS5A01G475200 chr6B 86.239 109 15 0 2138 2246 563806144 563806036 6.490000e-23 119.0
11 TraesCS5A01G475200 chr4B 82.072 608 91 13 2783 3383 557569060 557568464 1.530000e-138 503.0
12 TraesCS5A01G475200 chr4B 81.757 592 80 19 2871 3444 449195611 449195030 1.560000e-128 470.0
13 TraesCS5A01G475200 chr4B 93.976 83 5 0 1966 2048 84334158 84334240 3.880000e-25 126.0
14 TraesCS5A01G475200 chr2A 79.747 711 102 22 2783 3482 122005628 122004949 9.300000e-131 477.0
15 TraesCS5A01G475200 chr3D 79.561 729 98 32 2780 3473 141670716 141671428 1.200000e-129 473.0
16 TraesCS5A01G475200 chr3D 78.417 278 47 11 2776 3050 36016421 36016688 6.350000e-38 169.0
17 TraesCS5A01G475200 chr3D 87.629 97 12 0 2138 2234 310697041 310697137 3.020000e-21 113.0
18 TraesCS5A01G475200 chr7B 79.487 702 102 26 2806 3482 68531676 68532360 9.360000e-126 460.0
19 TraesCS5A01G475200 chr7B 79.259 270 47 6 2770 3035 525999707 525999971 2.940000e-41 180.0
20 TraesCS5A01G475200 chr7B 77.731 238 41 10 2774 3008 490951037 490951265 6.450000e-28 135.0
21 TraesCS5A01G475200 chr7B 91.954 87 5 2 1962 2048 689377012 689377096 1.800000e-23 121.0
22 TraesCS5A01G475200 chr7A 80.312 640 89 21 2858 3477 675136784 675137406 2.030000e-122 449.0
23 TraesCS5A01G475200 chr7A 94.186 86 5 0 1966 2051 622692346 622692261 8.340000e-27 132.0
24 TraesCS5A01G475200 chr7A 87.629 97 12 0 2138 2234 33147912 33148008 3.020000e-21 113.0
25 TraesCS5A01G475200 chr7A 85.321 109 16 0 2138 2246 33149336 33149228 3.020000e-21 113.0
26 TraesCS5A01G475200 chr6D 84.547 453 65 3 2781 3233 91496955 91497402 9.430000e-121 444.0
27 TraesCS5A01G475200 chr2D 81.274 518 76 14 2776 3282 139257557 139257050 2.070000e-107 399.0
28 TraesCS5A01G475200 chr2B 79.747 237 41 5 2776 3010 682165026 682165257 8.220000e-37 165.0
29 TraesCS5A01G475200 chr1D 88.235 119 5 4 1962 2080 65743130 65743239 2.320000e-27 134.0
30 TraesCS5A01G475200 chr7D 87.395 119 6 4 1962 2080 173529420 173529529 1.080000e-25 128.0
31 TraesCS5A01G475200 chr3B 87.826 115 6 3 1966 2080 817539150 817539044 1.080000e-25 128.0
32 TraesCS5A01G475200 chr1A 76.955 243 43 11 2773 3010 462330441 462330675 3.880000e-25 126.0
33 TraesCS5A01G475200 chr3A 88.889 81 9 0 1967 2047 740027394 740027314 2.350000e-17 100.0
34 TraesCS5A01G475200 chr4A 89.333 75 5 1 510 584 561552003 561552074 1.420000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G475200 chr5A 650516357 650520056 3699 True 6833.000000 6833 100.000000 1 3700 1 chr5A.!!$R1 3699
1 TraesCS5A01G475200 chr5D 522487874 522489922 2048 True 2220.000000 2220 86.632000 642 2694 1 chr5D.!!$R3 2052
2 TraesCS5A01G475200 chr5D 519413899 519414524 625 True 442.000000 442 79.878000 2839 3482 1 chr5D.!!$R2 643
3 TraesCS5A01G475200 chr5B 658759450 658763148 3698 True 879.333333 2218 82.449667 34 2686 3 chr5B.!!$R1 2652
4 TraesCS5A01G475200 chr1B 288172245 288172952 707 False 627.000000 627 83.032000 2781 3482 1 chr1B.!!$F1 701
5 TraesCS5A01G475200 chr6B 514659713 514660420 707 True 619.000000 619 82.893000 2783 3482 1 chr6B.!!$R1 699
6 TraesCS5A01G475200 chr4B 557568464 557569060 596 True 503.000000 503 82.072000 2783 3383 1 chr4B.!!$R2 600
7 TraesCS5A01G475200 chr4B 449195030 449195611 581 True 470.000000 470 81.757000 2871 3444 1 chr4B.!!$R1 573
8 TraesCS5A01G475200 chr2A 122004949 122005628 679 True 477.000000 477 79.747000 2783 3482 1 chr2A.!!$R1 699
9 TraesCS5A01G475200 chr3D 141670716 141671428 712 False 473.000000 473 79.561000 2780 3473 1 chr3D.!!$F2 693
10 TraesCS5A01G475200 chr7B 68531676 68532360 684 False 460.000000 460 79.487000 2806 3482 1 chr7B.!!$F1 676
11 TraesCS5A01G475200 chr7A 675136784 675137406 622 False 449.000000 449 80.312000 2858 3477 1 chr7A.!!$F2 619
12 TraesCS5A01G475200 chr2D 139257050 139257557 507 True 399.000000 399 81.274000 2776 3282 1 chr2D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.036952 TGCCTGAGCTTTTCTCTCCG 60.037 55.0 0.00 0.0 42.38 4.63 F
138 140 0.106149 ATATCCGGTCGCAGTTTCCC 59.894 55.0 0.00 0.0 0.00 3.97 F
818 1920 0.249868 CGACTGAAGCTTGTGACCCA 60.250 55.0 2.10 0.0 0.00 4.51 F
920 2048 0.533032 AAACTCCGGAGCAGAGCTAC 59.467 55.0 31.56 0.0 39.88 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 3114 0.312729 GACGACCGGCAAACCAATTT 59.687 50.0 0.00 0.00 34.57 1.82 R
2091 3262 0.393077 AGACGCAGCTTGGTTACTGT 59.607 50.0 0.00 0.00 36.26 3.55 R
2563 3783 0.456628 TCACGAGACGAACACCAACA 59.543 50.0 0.00 0.00 0.00 3.33 R
2830 4060 0.248907 CTTTTCTATCCGCCGCGAGA 60.249 55.0 15.93 10.37 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.206750 TCCTTCGTTTCCAACAAGACG 58.793 47.619 0.00 0.00 36.89 4.18
21 22 1.937899 CCTTCGTTTCCAACAAGACGT 59.062 47.619 0.00 0.00 36.89 4.34
22 23 3.125316 CCTTCGTTTCCAACAAGACGTA 58.875 45.455 0.00 0.00 36.89 3.57
23 24 3.183775 CCTTCGTTTCCAACAAGACGTAG 59.816 47.826 0.00 0.00 36.89 3.51
24 25 2.129607 TCGTTTCCAACAAGACGTAGC 58.870 47.619 0.00 0.00 36.89 3.58
25 26 2.132762 CGTTTCCAACAAGACGTAGCT 58.867 47.619 0.00 0.00 0.00 3.32
26 27 3.004629 TCGTTTCCAACAAGACGTAGCTA 59.995 43.478 0.00 0.00 36.89 3.32
27 28 3.924686 CGTTTCCAACAAGACGTAGCTAT 59.075 43.478 0.00 0.00 0.00 2.97
28 29 4.031426 CGTTTCCAACAAGACGTAGCTATC 59.969 45.833 0.00 0.00 0.00 2.08
29 30 3.795623 TCCAACAAGACGTAGCTATCC 57.204 47.619 0.00 0.00 0.00 2.59
30 31 3.093814 TCCAACAAGACGTAGCTATCCA 58.906 45.455 0.00 0.00 0.00 3.41
31 32 3.512329 TCCAACAAGACGTAGCTATCCAA 59.488 43.478 0.00 0.00 0.00 3.53
32 33 3.865745 CCAACAAGACGTAGCTATCCAAG 59.134 47.826 0.00 0.00 0.00 3.61
44 45 0.739462 TATCCAAGCAACGACGGCAG 60.739 55.000 0.00 0.00 0.00 4.85
46 47 3.726517 CAAGCAACGACGGCAGGG 61.727 66.667 0.00 0.00 0.00 4.45
49 50 4.980805 GCAACGACGGCAGGGTGA 62.981 66.667 0.00 0.00 0.00 4.02
53 54 1.164041 AACGACGGCAGGGTGAAAAG 61.164 55.000 0.00 0.00 0.00 2.27
55 56 1.291877 CGACGGCAGGGTGAAAAGAG 61.292 60.000 0.00 0.00 0.00 2.85
68 69 1.725164 GAAAAGAGCCCGTACGTTCTG 59.275 52.381 15.21 0.00 0.00 3.02
69 70 0.669625 AAAGAGCCCGTACGTTCTGC 60.670 55.000 15.21 10.95 0.00 4.26
72 73 2.813908 GCCCGTACGTTCTGCCTG 60.814 66.667 15.21 0.00 0.00 4.85
75 76 1.805945 CCGTACGTTCTGCCTGAGC 60.806 63.158 15.21 0.00 40.48 4.26
86 87 0.036952 TGCCTGAGCTTTTCTCTCCG 60.037 55.000 0.00 0.00 42.38 4.63
87 88 1.365368 GCCTGAGCTTTTCTCTCCGC 61.365 60.000 0.00 0.00 42.38 5.54
88 89 0.742635 CCTGAGCTTTTCTCTCCGCC 60.743 60.000 0.00 0.00 42.38 6.13
95 96 2.609916 GCTTTTCTCTCCGCCACTATTC 59.390 50.000 0.00 0.00 0.00 1.75
99 100 0.830648 CTCTCCGCCACTATTCCCAA 59.169 55.000 0.00 0.00 0.00 4.12
102 103 2.017049 CTCCGCCACTATTCCCAAAAG 58.983 52.381 0.00 0.00 0.00 2.27
103 104 1.631388 TCCGCCACTATTCCCAAAAGA 59.369 47.619 0.00 0.00 0.00 2.52
104 105 2.017049 CCGCCACTATTCCCAAAAGAG 58.983 52.381 0.00 0.00 0.00 2.85
105 106 2.618045 CCGCCACTATTCCCAAAAGAGT 60.618 50.000 0.00 0.00 0.00 3.24
111 112 2.215942 ATTCCCAAAAGAGTTCCCCG 57.784 50.000 0.00 0.00 0.00 5.73
114 115 1.202842 TCCCAAAAGAGTTCCCCGTTC 60.203 52.381 0.00 0.00 0.00 3.95
118 119 3.211045 CAAAAGAGTTCCCCGTTCTTGA 58.789 45.455 0.00 0.00 31.89 3.02
120 121 3.790089 AAGAGTTCCCCGTTCTTGAAT 57.210 42.857 0.00 0.00 30.41 2.57
121 122 4.903045 AAGAGTTCCCCGTTCTTGAATA 57.097 40.909 0.00 0.00 30.41 1.75
123 124 5.024785 AGAGTTCCCCGTTCTTGAATATC 57.975 43.478 0.00 0.00 0.00 1.63
127 128 1.140252 CCCCGTTCTTGAATATCCGGT 59.860 52.381 0.00 0.00 33.77 5.28
129 130 2.124903 CCGTTCTTGAATATCCGGTCG 58.875 52.381 0.00 0.00 0.00 4.79
132 133 2.509052 TCTTGAATATCCGGTCGCAG 57.491 50.000 0.00 0.00 0.00 5.18
137 139 1.865340 GAATATCCGGTCGCAGTTTCC 59.135 52.381 0.00 0.00 0.00 3.13
138 140 0.106149 ATATCCGGTCGCAGTTTCCC 59.894 55.000 0.00 0.00 0.00 3.97
156 158 4.437682 TCCCACTGTCACTCTTCATTTT 57.562 40.909 0.00 0.00 0.00 1.82
159 161 4.214971 CCCACTGTCACTCTTCATTTTCAG 59.785 45.833 0.00 0.00 0.00 3.02
209 211 1.409661 GGACACCCAGTGGTTGTCTTT 60.410 52.381 31.58 3.59 44.75 2.52
213 215 2.099405 ACCCAGTGGTTGTCTTTGTTG 58.901 47.619 8.74 0.00 44.75 3.33
225 227 3.698539 TGTCTTTGTTGGTGCAATCAAGA 59.301 39.130 4.24 1.08 0.00 3.02
230 232 3.229293 TGTTGGTGCAATCAAGATTCCA 58.771 40.909 4.24 0.00 0.00 3.53
244 246 4.181309 AGATTCCAGTTTCGTGAGAGAC 57.819 45.455 0.00 0.00 44.83 3.36
257 262 3.615937 CGTGAGAGACATGTTCATCAAGG 59.384 47.826 0.00 0.00 0.00 3.61
262 267 4.639310 AGAGACATGTTCATCAAGGCAATC 59.361 41.667 0.00 0.00 0.00 2.67
264 269 4.398358 AGACATGTTCATCAAGGCAATCAG 59.602 41.667 0.00 0.00 0.00 2.90
265 270 3.119245 ACATGTTCATCAAGGCAATCAGC 60.119 43.478 0.00 0.00 44.65 4.26
277 282 3.443099 GCAATCAGCCAATTAACCCTC 57.557 47.619 0.00 0.00 37.23 4.30
278 283 2.760092 GCAATCAGCCAATTAACCCTCA 59.240 45.455 0.00 0.00 37.23 3.86
279 284 3.195396 GCAATCAGCCAATTAACCCTCAA 59.805 43.478 0.00 0.00 37.23 3.02
280 285 4.322650 GCAATCAGCCAATTAACCCTCAAA 60.323 41.667 0.00 0.00 37.23 2.69
281 286 5.792741 CAATCAGCCAATTAACCCTCAAAA 58.207 37.500 0.00 0.00 0.00 2.44
282 287 6.229733 CAATCAGCCAATTAACCCTCAAAAA 58.770 36.000 0.00 0.00 0.00 1.94
283 288 6.625532 ATCAGCCAATTAACCCTCAAAAAT 57.374 33.333 0.00 0.00 0.00 1.82
284 289 7.732222 ATCAGCCAATTAACCCTCAAAAATA 57.268 32.000 0.00 0.00 0.00 1.40
285 290 7.546250 TCAGCCAATTAACCCTCAAAAATAA 57.454 32.000 0.00 0.00 0.00 1.40
286 291 7.967908 TCAGCCAATTAACCCTCAAAAATAAA 58.032 30.769 0.00 0.00 0.00 1.40
287 292 8.093927 TCAGCCAATTAACCCTCAAAAATAAAG 58.906 33.333 0.00 0.00 0.00 1.85
288 293 7.334171 CAGCCAATTAACCCTCAAAAATAAAGG 59.666 37.037 0.00 0.00 0.00 3.11
289 294 6.093495 GCCAATTAACCCTCAAAAATAAAGGC 59.907 38.462 0.00 0.00 0.00 4.35
290 295 7.164803 CCAATTAACCCTCAAAAATAAAGGCA 58.835 34.615 0.00 0.00 0.00 4.75
291 296 7.663493 CCAATTAACCCTCAAAAATAAAGGCAA 59.337 33.333 0.00 0.00 0.00 4.52
292 297 9.230122 CAATTAACCCTCAAAAATAAAGGCAAT 57.770 29.630 0.00 0.00 0.00 3.56
293 298 9.448438 AATTAACCCTCAAAAATAAAGGCAATC 57.552 29.630 0.00 0.00 0.00 2.67
294 299 6.432403 AACCCTCAAAAATAAAGGCAATCA 57.568 33.333 0.00 0.00 0.00 2.57
295 300 6.041423 ACCCTCAAAAATAAAGGCAATCAG 57.959 37.500 0.00 0.00 0.00 2.90
296 301 4.872124 CCCTCAAAAATAAAGGCAATCAGC 59.128 41.667 0.00 0.00 44.65 4.26
308 313 2.990941 GCAATCAGCCAATCATACACG 58.009 47.619 0.00 0.00 37.23 4.49
309 314 2.855953 GCAATCAGCCAATCATACACGC 60.856 50.000 0.00 0.00 37.23 5.34
310 315 1.220529 ATCAGCCAATCATACACGCG 58.779 50.000 3.53 3.53 0.00 6.01
311 316 1.010797 CAGCCAATCATACACGCGC 60.011 57.895 5.73 0.00 0.00 6.86
312 317 2.053116 GCCAATCATACACGCGCG 60.053 61.111 30.96 30.96 0.00 6.86
313 318 2.053116 CCAATCATACACGCGCGC 60.053 61.111 32.58 23.91 0.00 6.86
344 349 0.321671 CACACAGGAGGACCATTCGT 59.678 55.000 0.00 0.00 38.94 3.85
359 364 3.258123 CCATTCGTCCCAACATTTTCCTT 59.742 43.478 0.00 0.00 0.00 3.36
367 372 5.700832 GTCCCAACATTTTCCTTTTTGGATC 59.299 40.000 0.12 0.00 45.68 3.36
386 391 4.444449 GGATCTACGAGCATTAACCCCTTT 60.444 45.833 0.00 0.00 0.00 3.11
420 425 3.615496 ACCGTGATGTTATAGCAACGTTC 59.385 43.478 0.00 0.00 0.00 3.95
424 429 4.270325 GTGATGTTATAGCAACGTTCCCTC 59.730 45.833 0.00 0.00 0.00 4.30
428 433 1.286248 ATAGCAACGTTCCCTCCCTT 58.714 50.000 0.00 0.00 0.00 3.95
430 435 1.674651 GCAACGTTCCCTCCCTTCC 60.675 63.158 0.00 0.00 0.00 3.46
440 457 6.387807 ACGTTCCCTCCCTTCCTAATTATTTA 59.612 38.462 0.00 0.00 0.00 1.40
448 465 8.177438 TCCCTTCCTAATTATTTACCCTGAAA 57.823 34.615 0.00 0.00 0.00 2.69
449 466 8.625571 TCCCTTCCTAATTATTTACCCTGAAAA 58.374 33.333 0.00 0.00 0.00 2.29
450 467 8.914011 CCCTTCCTAATTATTTACCCTGAAAAG 58.086 37.037 0.00 0.00 0.00 2.27
451 468 9.695155 CCTTCCTAATTATTTACCCTGAAAAGA 57.305 33.333 0.00 0.00 0.00 2.52
458 475 9.908152 AATTATTTACCCTGAAAAGAAAAGACG 57.092 29.630 0.00 0.00 0.00 4.18
460 477 3.570912 ACCCTGAAAAGAAAAGACGGA 57.429 42.857 0.00 0.00 0.00 4.69
462 479 4.470602 ACCCTGAAAAGAAAAGACGGAAT 58.529 39.130 0.00 0.00 0.00 3.01
463 480 5.627135 ACCCTGAAAAGAAAAGACGGAATA 58.373 37.500 0.00 0.00 0.00 1.75
464 481 5.472478 ACCCTGAAAAGAAAAGACGGAATAC 59.528 40.000 0.00 0.00 0.00 1.89
465 482 5.106277 CCCTGAAAAGAAAAGACGGAATACC 60.106 44.000 0.00 0.00 0.00 2.73
466 483 5.705905 CCTGAAAAGAAAAGACGGAATACCT 59.294 40.000 0.00 0.00 0.00 3.08
467 484 6.348540 CCTGAAAAGAAAAGACGGAATACCTG 60.349 42.308 0.00 0.00 0.00 4.00
483 500 2.292267 ACCTGCACACTTTCTGAACTG 58.708 47.619 0.00 0.00 0.00 3.16
488 505 3.947196 TGCACACTTTCTGAACTGTTCAT 59.053 39.130 22.28 5.77 39.30 2.57
505 522 4.773510 GTTCATGAAAGAACAAGACGGAC 58.226 43.478 10.35 0.00 45.53 4.79
506 523 3.057019 TCATGAAAGAACAAGACGGACG 58.943 45.455 0.00 0.00 0.00 4.79
509 526 3.635331 TGAAAGAACAAGACGGACGTAG 58.365 45.455 0.00 0.00 0.00 3.51
558 575 9.595823 AAATGAAAGATAGCAAATCAAATGAGG 57.404 29.630 2.37 0.00 0.00 3.86
559 576 7.707624 TGAAAGATAGCAAATCAAATGAGGT 57.292 32.000 2.37 0.00 0.00 3.85
560 577 8.125978 TGAAAGATAGCAAATCAAATGAGGTT 57.874 30.769 2.37 0.00 0.00 3.50
562 579 7.951347 AAGATAGCAAATCAAATGAGGTTCT 57.049 32.000 2.37 0.00 0.00 3.01
563 580 7.330900 AGATAGCAAATCAAATGAGGTTCTG 57.669 36.000 2.37 0.00 0.00 3.02
564 581 7.114754 AGATAGCAAATCAAATGAGGTTCTGA 58.885 34.615 2.37 0.00 0.00 3.27
565 582 7.778853 AGATAGCAAATCAAATGAGGTTCTGAT 59.221 33.333 2.37 0.00 0.00 2.90
566 583 6.205101 AGCAAATCAAATGAGGTTCTGATC 57.795 37.500 0.00 0.00 0.00 2.92
567 584 5.713389 AGCAAATCAAATGAGGTTCTGATCA 59.287 36.000 0.00 0.00 0.00 2.92
568 585 6.209986 AGCAAATCAAATGAGGTTCTGATCAA 59.790 34.615 0.00 0.00 0.00 2.57
569 586 6.530534 GCAAATCAAATGAGGTTCTGATCAAG 59.469 38.462 0.00 0.00 0.00 3.02
570 587 5.831702 ATCAAATGAGGTTCTGATCAAGC 57.168 39.130 0.00 0.00 0.00 4.01
571 588 4.654915 TCAAATGAGGTTCTGATCAAGCA 58.345 39.130 0.00 0.00 0.00 3.91
572 589 4.698780 TCAAATGAGGTTCTGATCAAGCAG 59.301 41.667 0.00 0.00 37.24 4.24
573 590 3.996921 ATGAGGTTCTGATCAAGCAGT 57.003 42.857 0.00 0.00 37.20 4.40
574 591 5.426689 AATGAGGTTCTGATCAAGCAGTA 57.573 39.130 0.00 0.00 37.20 2.74
575 592 4.462508 TGAGGTTCTGATCAAGCAGTAG 57.537 45.455 0.00 0.00 37.20 2.57
576 593 3.834813 TGAGGTTCTGATCAAGCAGTAGT 59.165 43.478 0.00 0.00 37.20 2.73
577 594 5.016831 TGAGGTTCTGATCAAGCAGTAGTA 58.983 41.667 0.00 0.00 37.20 1.82
578 595 5.105716 TGAGGTTCTGATCAAGCAGTAGTAC 60.106 44.000 0.00 0.00 37.20 2.73
582 599 6.459848 GGTTCTGATCAAGCAGTAGTACGTAT 60.460 42.308 0.00 0.00 37.20 3.06
589 606 6.436261 TCAAGCAGTAGTACGTATAATCTGC 58.564 40.000 23.87 23.87 44.44 4.26
594 611 3.637998 AGTACGTATAATCTGCACCCG 57.362 47.619 0.00 0.00 0.00 5.28
601 618 0.250945 TAATCTGCACCCGTTTGGCA 60.251 50.000 0.00 0.00 37.83 4.92
605 622 4.645921 GCACCCGTTTGGCAGTGC 62.646 66.667 6.55 6.55 43.22 4.40
627 644 2.158986 AGCCTCATCTCACTTTCGATGG 60.159 50.000 0.00 0.00 38.02 3.51
638 655 4.006989 CACTTTCGATGGGAATTACCACA 58.993 43.478 12.95 0.00 44.72 4.17
639 656 4.457603 CACTTTCGATGGGAATTACCACAA 59.542 41.667 12.95 2.25 44.72 3.33
640 657 4.457949 ACTTTCGATGGGAATTACCACAAC 59.542 41.667 12.95 5.94 44.72 3.32
708 1810 2.353269 CTCGTTACATCAGTCTCGAGCT 59.647 50.000 7.81 5.50 40.88 4.09
731 1833 4.058817 CTCTCAACCGCCATATTAACTCC 58.941 47.826 0.00 0.00 0.00 3.85
732 1834 3.709653 TCTCAACCGCCATATTAACTCCT 59.290 43.478 0.00 0.00 0.00 3.69
737 1839 3.254060 CCGCCATATTAACTCCTCGATG 58.746 50.000 0.00 0.00 0.00 3.84
815 1917 3.014604 AGTACGACTGAAGCTTGTGAC 57.985 47.619 2.10 0.00 0.00 3.67
816 1918 2.059541 GTACGACTGAAGCTTGTGACC 58.940 52.381 2.10 0.00 0.00 4.02
817 1919 0.249911 ACGACTGAAGCTTGTGACCC 60.250 55.000 2.10 0.00 0.00 4.46
818 1920 0.249868 CGACTGAAGCTTGTGACCCA 60.250 55.000 2.10 0.00 0.00 4.51
819 1921 1.609061 CGACTGAAGCTTGTGACCCAT 60.609 52.381 2.10 0.00 0.00 4.00
820 1922 2.508526 GACTGAAGCTTGTGACCCATT 58.491 47.619 2.10 0.00 0.00 3.16
821 1923 2.887152 GACTGAAGCTTGTGACCCATTT 59.113 45.455 2.10 0.00 0.00 2.32
822 1924 3.299503 ACTGAAGCTTGTGACCCATTTT 58.700 40.909 2.10 0.00 0.00 1.82
823 1925 3.319122 ACTGAAGCTTGTGACCCATTTTC 59.681 43.478 2.10 0.00 0.00 2.29
824 1926 3.565307 TGAAGCTTGTGACCCATTTTCT 58.435 40.909 2.10 0.00 0.00 2.52
825 1927 3.318839 TGAAGCTTGTGACCCATTTTCTG 59.681 43.478 2.10 0.00 0.00 3.02
826 1928 3.228188 AGCTTGTGACCCATTTTCTGA 57.772 42.857 0.00 0.00 0.00 3.27
827 1929 3.565307 AGCTTGTGACCCATTTTCTGAA 58.435 40.909 0.00 0.00 0.00 3.02
915 2043 2.356135 GCAATAAAACTCCGGAGCAGA 58.644 47.619 31.56 14.56 0.00 4.26
916 2044 2.352960 GCAATAAAACTCCGGAGCAGAG 59.647 50.000 31.56 15.22 0.00 3.35
917 2045 2.317530 ATAAAACTCCGGAGCAGAGC 57.682 50.000 31.56 0.00 0.00 4.09
918 2046 1.267121 TAAAACTCCGGAGCAGAGCT 58.733 50.000 31.56 7.90 43.88 4.09
919 2047 1.267121 AAAACTCCGGAGCAGAGCTA 58.733 50.000 31.56 0.00 39.88 3.32
920 2048 0.533032 AAACTCCGGAGCAGAGCTAC 59.467 55.000 31.56 0.00 39.88 3.58
970 2098 2.278332 GGCAGGGCCTCCTATAAAAG 57.722 55.000 0.95 0.00 46.69 2.27
971 2099 1.495148 GGCAGGGCCTCCTATAAAAGT 59.505 52.381 0.95 0.00 46.69 2.66
972 2100 2.576615 GCAGGGCCTCCTATAAAAGTG 58.423 52.381 0.95 0.00 42.67 3.16
976 2104 4.640647 CAGGGCCTCCTATAAAAGTGTTTC 59.359 45.833 0.95 0.00 42.67 2.78
1086 2226 2.408050 CTGGTGACACAGTTGTAGAGC 58.592 52.381 8.08 0.00 35.47 4.09
1166 2306 2.772191 TCCACCGCCATATGCCCT 60.772 61.111 0.00 0.00 36.24 5.19
1196 2336 4.883354 CAGCCCATCTTCCGCCCC 62.883 72.222 0.00 0.00 0.00 5.80
1280 2420 2.035312 AGGAAAGGGCAGCAGCAG 59.965 61.111 2.65 0.00 44.61 4.24
1508 2654 3.017054 GCAGGAGCAGGTGAGGATACTA 61.017 54.545 0.00 0.00 45.47 1.82
1555 2704 5.277345 GCTGATTATTTGCCGTACTACTTGG 60.277 44.000 0.00 0.00 0.00 3.61
1572 2721 6.881602 ACTACTTGGGTTCTGAAGATTTGATC 59.118 38.462 0.00 0.00 0.00 2.92
1590 2739 2.526888 TCCCACTCGTCTTGATACCT 57.473 50.000 0.00 0.00 0.00 3.08
1591 2740 2.376109 TCCCACTCGTCTTGATACCTC 58.624 52.381 0.00 0.00 0.00 3.85
1592 2741 2.100197 CCCACTCGTCTTGATACCTCA 58.900 52.381 0.00 0.00 0.00 3.86
1593 2742 2.496070 CCCACTCGTCTTGATACCTCAA 59.504 50.000 0.00 0.00 39.07 3.02
1613 2762 8.628280 ACCTCAATCAAAAGAAAAAGAGAAGAG 58.372 33.333 0.00 0.00 0.00 2.85
1734 2883 7.833682 TCATTTGGATATCTGAACTTTAAGCCA 59.166 33.333 2.05 0.00 0.00 4.75
1764 2913 6.037062 TGCGGAAATACAATGATGACAAGTAG 59.963 38.462 0.00 0.00 0.00 2.57
1766 2915 7.223971 GCGGAAATACAATGATGACAAGTAGTA 59.776 37.037 0.00 0.00 0.00 1.82
1767 2916 8.540492 CGGAAATACAATGATGACAAGTAGTAC 58.460 37.037 0.00 0.00 0.00 2.73
1768 2917 9.378551 GGAAATACAATGATGACAAGTAGTACA 57.621 33.333 2.52 0.00 0.00 2.90
1808 2959 9.206870 GTGTGGAATGATTGATTAATTTGTTGT 57.793 29.630 0.00 0.00 0.00 3.32
1834 2985 6.206634 ACACGTATTCCAAAACAGATTGATGT 59.793 34.615 0.00 0.00 33.96 3.06
1835 2986 6.524239 CACGTATTCCAAAACAGATTGATGTG 59.476 38.462 0.00 0.00 32.52 3.21
1837 2988 6.524239 CGTATTCCAAAACAGATTGATGTGTG 59.476 38.462 0.00 0.00 34.23 3.82
1838 2989 4.241590 TCCAAAACAGATTGATGTGTGC 57.758 40.909 0.00 0.00 34.23 4.57
1839 2990 2.981805 CCAAAACAGATTGATGTGTGCG 59.018 45.455 0.00 0.00 34.23 5.34
1840 2991 3.550639 CCAAAACAGATTGATGTGTGCGT 60.551 43.478 0.00 0.00 34.23 5.24
1841 2992 4.320129 CCAAAACAGATTGATGTGTGCGTA 60.320 41.667 0.00 0.00 34.23 4.42
1842 2993 5.393124 CAAAACAGATTGATGTGTGCGTAT 58.607 37.500 0.00 0.00 34.23 3.06
1843 2994 4.864916 AACAGATTGATGTGTGCGTATC 57.135 40.909 0.00 0.00 34.23 2.24
1844 2995 3.198068 ACAGATTGATGTGTGCGTATCC 58.802 45.455 0.00 0.00 32.57 2.59
1845 2996 2.219445 CAGATTGATGTGTGCGTATCCG 59.781 50.000 0.00 0.00 37.07 4.18
1846 2997 2.159099 AGATTGATGTGTGCGTATCCGT 60.159 45.455 0.00 0.00 36.15 4.69
1847 2998 2.943449 TTGATGTGTGCGTATCCGTA 57.057 45.000 0.00 0.00 36.15 4.02
1850 3001 2.058798 GATGTGTGCGTATCCGTATGG 58.941 52.381 0.00 0.00 36.15 2.74
1865 3016 6.879276 TCCGTATGGATTCTACTCTACTTG 57.121 41.667 0.00 0.00 40.17 3.16
1866 3017 5.241064 TCCGTATGGATTCTACTCTACTTGC 59.759 44.000 0.00 0.00 40.17 4.01
1907 3058 4.409570 CATCTTTGCCTCGTTTGATTCAG 58.590 43.478 0.00 0.00 0.00 3.02
1943 3114 5.658634 TCTGAAGCAATTAAGCTCTCTCCTA 59.341 40.000 0.00 0.00 45.89 2.94
1948 3119 7.565323 AGCAATTAAGCTCTCTCCTAAATTG 57.435 36.000 0.00 0.00 42.18 2.32
1949 3120 6.545298 AGCAATTAAGCTCTCTCCTAAATTGG 59.455 38.462 0.00 0.00 42.18 3.16
1955 3126 3.129462 GCTCTCTCCTAAATTGGTTTGCC 59.871 47.826 0.00 0.00 0.00 4.52
1960 3131 1.135517 CCTAAATTGGTTTGCCGGTCG 60.136 52.381 1.90 0.00 37.67 4.79
1978 3149 2.203139 TCGTTGCAGGTGGTGGTG 60.203 61.111 0.00 0.00 0.00 4.17
1979 3150 3.964875 CGTTGCAGGTGGTGGTGC 61.965 66.667 0.00 0.00 40.29 5.01
2048 3219 0.830648 CCTCGCCAAGATGGAAGGTA 59.169 55.000 0.00 0.00 40.96 3.08
2051 3222 1.906574 TCGCCAAGATGGAAGGTAAGT 59.093 47.619 0.00 0.00 40.96 2.24
2052 3223 2.009774 CGCCAAGATGGAAGGTAAGTG 58.990 52.381 0.00 0.00 40.96 3.16
2053 3224 2.354704 CGCCAAGATGGAAGGTAAGTGA 60.355 50.000 0.00 0.00 40.96 3.41
2054 3225 3.274288 GCCAAGATGGAAGGTAAGTGAG 58.726 50.000 0.00 0.00 40.96 3.51
2055 3226 3.274288 CCAAGATGGAAGGTAAGTGAGC 58.726 50.000 0.00 0.00 40.96 4.26
2056 3227 3.307691 CCAAGATGGAAGGTAAGTGAGCA 60.308 47.826 0.00 0.00 40.96 4.26
2057 3228 3.618690 AGATGGAAGGTAAGTGAGCAC 57.381 47.619 0.00 0.00 0.00 4.40
2058 3229 2.237392 AGATGGAAGGTAAGTGAGCACC 59.763 50.000 0.00 0.00 34.86 5.01
2059 3230 1.429930 TGGAAGGTAAGTGAGCACCA 58.570 50.000 0.00 0.00 37.28 4.17
2060 3231 1.771854 TGGAAGGTAAGTGAGCACCAA 59.228 47.619 0.00 0.00 37.28 3.67
2061 3232 2.224523 TGGAAGGTAAGTGAGCACCAAG 60.225 50.000 0.00 0.00 37.28 3.61
2062 3233 2.038557 GGAAGGTAAGTGAGCACCAAGA 59.961 50.000 0.00 0.00 37.28 3.02
2063 3234 3.496160 GGAAGGTAAGTGAGCACCAAGAA 60.496 47.826 0.00 0.00 37.28 2.52
2064 3235 3.857157 AGGTAAGTGAGCACCAAGAAA 57.143 42.857 0.00 0.00 37.28 2.52
2065 3236 3.477530 AGGTAAGTGAGCACCAAGAAAC 58.522 45.455 0.00 0.00 37.28 2.78
2066 3237 3.118038 AGGTAAGTGAGCACCAAGAAACA 60.118 43.478 0.00 0.00 37.28 2.83
2067 3238 3.821033 GGTAAGTGAGCACCAAGAAACAT 59.179 43.478 0.00 0.00 34.77 2.71
2068 3239 4.083271 GGTAAGTGAGCACCAAGAAACATC 60.083 45.833 0.00 0.00 34.77 3.06
2069 3240 3.498774 AGTGAGCACCAAGAAACATCT 57.501 42.857 0.00 0.00 0.00 2.90
2070 3241 3.406764 AGTGAGCACCAAGAAACATCTC 58.593 45.455 0.00 0.00 0.00 2.75
2071 3242 3.072184 AGTGAGCACCAAGAAACATCTCT 59.928 43.478 0.00 0.00 0.00 3.10
2072 3243 3.188048 GTGAGCACCAAGAAACATCTCTG 59.812 47.826 0.00 0.00 0.00 3.35
2093 3264 5.895636 TGAAACTTTTTCTTCAGAGCACA 57.104 34.783 0.68 0.00 0.00 4.57
2094 3265 5.883661 TGAAACTTTTTCTTCAGAGCACAG 58.116 37.500 0.68 0.00 0.00 3.66
2357 3555 2.031069 AGCTGTGTGTGTACTACGTGAG 60.031 50.000 0.00 0.00 0.00 3.51
2555 3775 2.267006 CTGCCGTGCTGTGGATCT 59.733 61.111 0.00 0.00 0.00 2.75
2556 3776 2.046988 TGCCGTGCTGTGGATCTG 60.047 61.111 0.00 0.00 0.00 2.90
2557 3777 2.046892 GCCGTGCTGTGGATCTGT 60.047 61.111 0.00 0.00 0.00 3.41
2558 3778 2.393768 GCCGTGCTGTGGATCTGTG 61.394 63.158 0.00 0.00 0.00 3.66
2559 3779 1.004560 CCGTGCTGTGGATCTGTGT 60.005 57.895 0.00 0.00 0.00 3.72
2560 3780 0.603707 CCGTGCTGTGGATCTGTGTT 60.604 55.000 0.00 0.00 0.00 3.32
2561 3781 0.792640 CGTGCTGTGGATCTGTGTTC 59.207 55.000 0.00 0.00 0.00 3.18
2562 3782 0.792640 GTGCTGTGGATCTGTGTTCG 59.207 55.000 0.00 0.00 0.00 3.95
2563 3783 0.392706 TGCTGTGGATCTGTGTTCGT 59.607 50.000 0.00 0.00 0.00 3.85
2564 3784 0.792640 GCTGTGGATCTGTGTTCGTG 59.207 55.000 0.00 0.00 0.00 4.35
2565 3785 1.873903 GCTGTGGATCTGTGTTCGTGT 60.874 52.381 0.00 0.00 0.00 4.49
2566 3786 2.483876 CTGTGGATCTGTGTTCGTGTT 58.516 47.619 0.00 0.00 0.00 3.32
2567 3787 2.209273 TGTGGATCTGTGTTCGTGTTG 58.791 47.619 0.00 0.00 0.00 3.33
2568 3788 1.531149 GTGGATCTGTGTTCGTGTTGG 59.469 52.381 0.00 0.00 0.00 3.77
2569 3789 1.140052 TGGATCTGTGTTCGTGTTGGT 59.860 47.619 0.00 0.00 0.00 3.67
2570 3790 1.531149 GGATCTGTGTTCGTGTTGGTG 59.469 52.381 0.00 0.00 0.00 4.17
2571 3791 2.210116 GATCTGTGTTCGTGTTGGTGT 58.790 47.619 0.00 0.00 0.00 4.16
2629 3849 3.194861 CGTGGTGTTTCTTCTCTTGTCA 58.805 45.455 0.00 0.00 0.00 3.58
2631 3851 4.319046 CGTGGTGTTTCTTCTCTTGTCATG 60.319 45.833 0.00 0.00 0.00 3.07
2648 3868 1.244697 ATGAGACTCGGAGCGTGTGT 61.245 55.000 4.58 0.00 33.78 3.72
2649 3869 0.604511 TGAGACTCGGAGCGTGTGTA 60.605 55.000 4.58 0.00 33.78 2.90
2650 3870 0.733729 GAGACTCGGAGCGTGTGTAT 59.266 55.000 4.58 0.00 33.78 2.29
2651 3871 0.452184 AGACTCGGAGCGTGTGTATG 59.548 55.000 4.58 0.00 33.78 2.39
2665 3890 3.064207 TGTGTATGGCTCTGTTCGTTTC 58.936 45.455 0.00 0.00 0.00 2.78
2666 3891 3.064207 GTGTATGGCTCTGTTCGTTTCA 58.936 45.455 0.00 0.00 0.00 2.69
2667 3892 3.684788 GTGTATGGCTCTGTTCGTTTCAT 59.315 43.478 0.00 0.00 0.00 2.57
2668 3893 3.932710 TGTATGGCTCTGTTCGTTTCATC 59.067 43.478 0.00 0.00 0.00 2.92
2670 3895 3.126001 TGGCTCTGTTCGTTTCATCTT 57.874 42.857 0.00 0.00 0.00 2.40
2671 3896 3.067106 TGGCTCTGTTCGTTTCATCTTC 58.933 45.455 0.00 0.00 0.00 2.87
2673 3898 3.369451 GGCTCTGTTCGTTTCATCTTCTC 59.631 47.826 0.00 0.00 0.00 2.87
2675 3900 4.091220 GCTCTGTTCGTTTCATCTTCTCTG 59.909 45.833 0.00 0.00 0.00 3.35
2694 3923 6.749139 TCTCTGCTGTAATATATGAGCGTTT 58.251 36.000 7.00 0.00 33.97 3.60
2695 3924 6.863645 TCTCTGCTGTAATATATGAGCGTTTC 59.136 38.462 7.00 0.00 33.97 2.78
2696 3925 6.512297 TCTGCTGTAATATATGAGCGTTTCA 58.488 36.000 7.00 0.00 40.85 2.69
2698 3927 7.116805 TCTGCTGTAATATATGAGCGTTTCATG 59.883 37.037 12.83 0.00 46.01 3.07
2699 3928 6.705825 TGCTGTAATATATGAGCGTTTCATGT 59.294 34.615 12.83 9.63 46.01 3.21
2700 3929 7.011773 GCTGTAATATATGAGCGTTTCATGTG 58.988 38.462 12.83 0.00 46.01 3.21
2701 3930 6.887368 TGTAATATATGAGCGTTTCATGTGC 58.113 36.000 12.83 0.00 46.01 4.57
2702 3931 6.481644 TGTAATATATGAGCGTTTCATGTGCA 59.518 34.615 12.83 0.00 46.01 4.57
2703 3932 3.957671 ATATGAGCGTTTCATGTGCAG 57.042 42.857 12.83 0.00 46.01 4.41
2704 3933 1.812235 ATGAGCGTTTCATGTGCAGA 58.188 45.000 4.13 0.00 44.84 4.26
2705 3934 0.867746 TGAGCGTTTCATGTGCAGAC 59.132 50.000 0.00 0.00 0.00 3.51
2706 3935 0.179240 GAGCGTTTCATGTGCAGACG 60.179 55.000 0.00 0.00 36.85 4.18
2707 3936 0.880278 AGCGTTTCATGTGCAGACGT 60.880 50.000 0.00 0.00 36.22 4.34
2708 3937 0.722469 GCGTTTCATGTGCAGACGTG 60.722 55.000 0.00 0.00 40.06 4.49
2721 3950 3.542712 CAGACGTGCTGCTTTACAAAT 57.457 42.857 0.00 0.00 37.90 2.32
2722 3951 3.888934 CAGACGTGCTGCTTTACAAATT 58.111 40.909 0.00 0.00 37.90 1.82
2723 3952 3.665409 CAGACGTGCTGCTTTACAAATTG 59.335 43.478 0.00 0.00 37.90 2.32
2724 3953 3.315191 AGACGTGCTGCTTTACAAATTGT 59.685 39.130 3.43 3.43 0.00 2.71
2725 3954 3.371168 ACGTGCTGCTTTACAAATTGTG 58.629 40.909 9.15 0.00 0.00 3.33
2726 3955 2.725723 CGTGCTGCTTTACAAATTGTGG 59.274 45.455 9.15 0.46 0.00 4.17
2727 3956 3.549827 CGTGCTGCTTTACAAATTGTGGA 60.550 43.478 9.15 0.00 0.00 4.02
2728 3957 3.735746 GTGCTGCTTTACAAATTGTGGAC 59.264 43.478 9.15 0.00 0.00 4.02
2729 3958 3.636300 TGCTGCTTTACAAATTGTGGACT 59.364 39.130 9.15 0.00 0.00 3.85
2730 3959 4.099266 TGCTGCTTTACAAATTGTGGACTT 59.901 37.500 9.15 0.00 0.00 3.01
2731 3960 4.445385 GCTGCTTTACAAATTGTGGACTTG 59.555 41.667 9.15 0.00 0.00 3.16
2732 3961 4.367450 TGCTTTACAAATTGTGGACTTGC 58.633 39.130 9.15 5.38 0.00 4.01
2733 3962 3.425193 GCTTTACAAATTGTGGACTTGCG 59.575 43.478 9.15 0.00 0.00 4.85
2734 3963 4.791411 GCTTTACAAATTGTGGACTTGCGA 60.791 41.667 9.15 0.00 0.00 5.10
2735 3964 5.446143 TTTACAAATTGTGGACTTGCGAT 57.554 34.783 9.15 0.00 0.00 4.58
2736 3965 3.559238 ACAAATTGTGGACTTGCGATC 57.441 42.857 0.00 0.00 0.00 3.69
2737 3966 3.149196 ACAAATTGTGGACTTGCGATCT 58.851 40.909 0.00 0.00 0.00 2.75
2738 3967 3.189287 ACAAATTGTGGACTTGCGATCTC 59.811 43.478 0.00 0.00 0.00 2.75
2739 3968 1.645034 ATTGTGGACTTGCGATCTCG 58.355 50.000 0.00 0.00 43.27 4.04
2740 3969 0.601057 TTGTGGACTTGCGATCTCGA 59.399 50.000 3.33 0.00 43.02 4.04
2741 3970 0.601057 TGTGGACTTGCGATCTCGAA 59.399 50.000 3.33 0.00 43.02 3.71
2742 3971 1.272781 GTGGACTTGCGATCTCGAAG 58.727 55.000 3.33 6.94 43.02 3.79
2743 3972 0.888619 TGGACTTGCGATCTCGAAGT 59.111 50.000 3.33 9.81 43.02 3.01
2744 3973 1.272781 GGACTTGCGATCTCGAAGTG 58.727 55.000 16.49 2.93 43.02 3.16
2745 3974 1.135373 GGACTTGCGATCTCGAAGTGA 60.135 52.381 16.49 0.00 43.02 3.41
2746 3975 2.480416 GGACTTGCGATCTCGAAGTGAT 60.480 50.000 16.49 0.00 43.94 3.06
2747 3976 2.533535 GACTTGCGATCTCGAAGTGATG 59.466 50.000 16.49 0.00 41.12 3.07
2748 3977 2.094494 ACTTGCGATCTCGAAGTGATGT 60.094 45.455 3.33 0.00 41.12 3.06
2749 3978 2.654749 TGCGATCTCGAAGTGATGTT 57.345 45.000 3.33 0.00 41.12 2.71
2750 3979 2.959516 TGCGATCTCGAAGTGATGTTT 58.040 42.857 3.33 0.00 41.12 2.83
2751 3980 2.667969 TGCGATCTCGAAGTGATGTTTG 59.332 45.455 3.33 0.00 41.12 2.93
2752 3981 2.029728 GCGATCTCGAAGTGATGTTTGG 59.970 50.000 3.33 0.00 41.12 3.28
2753 3982 2.029728 CGATCTCGAAGTGATGTTTGGC 59.970 50.000 0.00 0.00 41.12 4.52
2754 3983 2.542020 TCTCGAAGTGATGTTTGGCA 57.458 45.000 0.00 0.00 0.00 4.92
2755 3984 2.844946 TCTCGAAGTGATGTTTGGCAA 58.155 42.857 0.00 0.00 0.00 4.52
2756 3985 3.210227 TCTCGAAGTGATGTTTGGCAAA 58.790 40.909 8.93 8.93 0.00 3.68
2757 3986 3.003275 TCTCGAAGTGATGTTTGGCAAAC 59.997 43.478 30.99 30.99 41.73 2.93
2765 3994 2.820059 TGTTTGGCAAACACAACACA 57.180 40.000 35.03 16.78 45.79 3.72
2766 3995 2.408050 TGTTTGGCAAACACAACACAC 58.592 42.857 35.03 13.02 45.79 3.82
2767 3996 2.224042 TGTTTGGCAAACACAACACACA 60.224 40.909 35.03 15.39 45.79 3.72
2768 3997 2.802816 GTTTGGCAAACACAACACACAA 59.197 40.909 32.22 0.00 41.04 3.33
2769 3998 2.071688 TGGCAAACACAACACACAAC 57.928 45.000 0.00 0.00 0.00 3.32
2770 3999 1.615883 TGGCAAACACAACACACAACT 59.384 42.857 0.00 0.00 0.00 3.16
2771 4000 2.036475 TGGCAAACACAACACACAACTT 59.964 40.909 0.00 0.00 0.00 2.66
2772 4001 2.411409 GGCAAACACAACACACAACTTG 59.589 45.455 0.00 0.00 0.00 3.16
2773 4002 3.312828 GCAAACACAACACACAACTTGA 58.687 40.909 0.00 0.00 0.00 3.02
2774 4003 3.738282 GCAAACACAACACACAACTTGAA 59.262 39.130 0.00 0.00 0.00 2.69
2775 4004 4.143347 GCAAACACAACACACAACTTGAAG 60.143 41.667 0.00 0.00 0.00 3.02
2776 4005 3.216147 ACACAACACACAACTTGAAGC 57.784 42.857 0.00 0.00 0.00 3.86
2777 4006 2.819608 ACACAACACACAACTTGAAGCT 59.180 40.909 0.00 0.00 0.00 3.74
2778 4007 3.119849 ACACAACACACAACTTGAAGCTC 60.120 43.478 0.00 0.00 0.00 4.09
2799 4028 1.625616 TTAGAGCAACTCTAACGCGC 58.374 50.000 5.73 0.00 44.85 6.86
2802 4031 3.110178 GCAACTCTAACGCGCCGT 61.110 61.111 5.73 0.00 43.97 5.68
2817 4047 0.318275 GCCGTTTCATTTTGTCCGCA 60.318 50.000 0.00 0.00 0.00 5.69
2835 4066 4.117372 CGCGTCCGTTTGTCTCGC 62.117 66.667 0.00 0.00 42.78 5.03
2836 4067 4.117372 GCGTCCGTTTGTCTCGCG 62.117 66.667 0.00 0.00 37.74 5.87
2842 4073 2.813908 GTTTGTCTCGCGGCGGAT 60.814 61.111 23.46 0.00 0.00 4.18
2903 4134 0.668401 CCGTTTTTCGTCCGCCTACT 60.668 55.000 0.00 0.00 37.94 2.57
2943 4185 2.112380 TTGAGCCTCATTTGCATCGA 57.888 45.000 0.00 0.00 0.00 3.59
2965 4209 0.299300 CGAACACAAAACAGACGCGA 59.701 50.000 15.93 0.00 0.00 5.87
2967 4211 0.027586 AACACAAAACAGACGCGAGC 59.972 50.000 15.93 3.96 0.00 5.03
2968 4212 1.437089 CACAAAACAGACGCGAGCG 60.437 57.895 15.93 16.38 46.03 5.03
2969 4213 1.590525 ACAAAACAGACGCGAGCGA 60.591 52.632 24.72 0.00 42.83 4.93
3060 4307 3.775654 CCTCGCCCGCCTTCTTCT 61.776 66.667 0.00 0.00 0.00 2.85
3063 4310 2.232298 CTCGCCCGCCTTCTTCTTCT 62.232 60.000 0.00 0.00 0.00 2.85
3088 4346 4.128388 CGCCACCCATTTTCCGGC 62.128 66.667 0.00 0.00 39.45 6.13
3202 4468 2.366153 GAAAGCTTCCCACCCCCACA 62.366 60.000 0.00 0.00 0.00 4.17
3227 4495 0.736053 GACACAACCGCAACCAAGAA 59.264 50.000 0.00 0.00 0.00 2.52
3228 4496 0.738389 ACACAACCGCAACCAAGAAG 59.262 50.000 0.00 0.00 0.00 2.85
3229 4497 0.594796 CACAACCGCAACCAAGAAGC 60.595 55.000 0.00 0.00 0.00 3.86
3230 4498 1.007387 CAACCGCAACCAAGAAGCC 60.007 57.895 0.00 0.00 0.00 4.35
3235 4523 3.373565 CAACCAAGAAGCCGCCCC 61.374 66.667 0.00 0.00 0.00 5.80
3332 4624 1.433534 CTTCACTGGTCGGCTCTTTC 58.566 55.000 0.00 0.00 0.00 2.62
3340 4632 0.458543 GTCGGCTCTTTCTCGATGCA 60.459 55.000 0.00 0.00 35.35 3.96
3397 4689 0.179184 GACTCTGCCGACGAGTTCTC 60.179 60.000 0.00 0.00 41.53 2.87
3401 4693 1.340248 TCTGCCGACGAGTTCTCTTTT 59.660 47.619 0.00 0.00 0.00 2.27
3465 4758 1.630126 GGAGGAGATCTTGGCTGCCA 61.630 60.000 19.30 19.30 0.00 4.92
3487 4780 4.963878 GGTCCATCACCAGCGATT 57.036 55.556 0.00 0.00 45.98 3.34
3488 4781 2.397751 GGTCCATCACCAGCGATTG 58.602 57.895 0.00 0.00 45.98 2.67
3489 4782 0.392998 GGTCCATCACCAGCGATTGT 60.393 55.000 0.00 0.00 45.98 2.71
3490 4783 1.453155 GTCCATCACCAGCGATTGTT 58.547 50.000 0.00 0.00 0.00 2.83
3491 4784 1.398390 GTCCATCACCAGCGATTGTTC 59.602 52.381 0.00 0.00 0.00 3.18
3492 4785 0.734889 CCATCACCAGCGATTGTTCC 59.265 55.000 0.00 0.00 0.00 3.62
3493 4786 0.374758 CATCACCAGCGATTGTTCCG 59.625 55.000 0.00 0.00 0.00 4.30
3494 4787 0.036388 ATCACCAGCGATTGTTCCGT 60.036 50.000 0.00 0.00 0.00 4.69
3495 4788 0.948623 TCACCAGCGATTGTTCCGTG 60.949 55.000 0.00 0.00 0.00 4.94
3496 4789 0.948623 CACCAGCGATTGTTCCGTGA 60.949 55.000 0.00 0.00 0.00 4.35
3497 4790 0.949105 ACCAGCGATTGTTCCGTGAC 60.949 55.000 0.00 0.00 0.00 3.67
3498 4791 0.670546 CCAGCGATTGTTCCGTGACT 60.671 55.000 0.00 0.00 0.00 3.41
3499 4792 0.716108 CAGCGATTGTTCCGTGACTC 59.284 55.000 0.00 0.00 0.00 3.36
3500 4793 0.389948 AGCGATTGTTCCGTGACTCC 60.390 55.000 0.00 0.00 0.00 3.85
3501 4794 0.669318 GCGATTGTTCCGTGACTCCA 60.669 55.000 0.00 0.00 0.00 3.86
3502 4795 2.007049 GCGATTGTTCCGTGACTCCAT 61.007 52.381 0.00 0.00 0.00 3.41
3503 4796 2.346803 CGATTGTTCCGTGACTCCATT 58.653 47.619 0.00 0.00 0.00 3.16
3504 4797 2.348666 CGATTGTTCCGTGACTCCATTC 59.651 50.000 0.00 0.00 0.00 2.67
3505 4798 2.178912 TTGTTCCGTGACTCCATTCC 57.821 50.000 0.00 0.00 0.00 3.01
3506 4799 0.037697 TGTTCCGTGACTCCATTCCG 60.038 55.000 0.00 0.00 0.00 4.30
3507 4800 0.037605 GTTCCGTGACTCCATTCCGT 60.038 55.000 0.00 0.00 0.00 4.69
3508 4801 0.037697 TTCCGTGACTCCATTCCGTG 60.038 55.000 0.00 0.00 0.00 4.94
3509 4802 0.896479 TCCGTGACTCCATTCCGTGA 60.896 55.000 0.00 0.00 0.00 4.35
3510 4803 0.736325 CCGTGACTCCATTCCGTGAC 60.736 60.000 0.00 0.00 0.00 3.67
3511 4804 0.038618 CGTGACTCCATTCCGTGACA 60.039 55.000 0.00 0.00 0.00 3.58
3512 4805 1.604438 CGTGACTCCATTCCGTGACAA 60.604 52.381 0.00 0.00 0.00 3.18
3513 4806 2.699954 GTGACTCCATTCCGTGACAAT 58.300 47.619 0.00 0.00 0.00 2.71
3514 4807 3.674955 CGTGACTCCATTCCGTGACAATA 60.675 47.826 0.00 0.00 0.00 1.90
3515 4808 4.442706 GTGACTCCATTCCGTGACAATAT 58.557 43.478 0.00 0.00 0.00 1.28
3516 4809 4.876107 GTGACTCCATTCCGTGACAATATT 59.124 41.667 0.00 0.00 0.00 1.28
3517 4810 5.006746 GTGACTCCATTCCGTGACAATATTC 59.993 44.000 0.00 0.00 0.00 1.75
3518 4811 5.097742 ACTCCATTCCGTGACAATATTCA 57.902 39.130 0.00 0.00 0.00 2.57
3519 4812 5.496556 ACTCCATTCCGTGACAATATTCAA 58.503 37.500 0.00 0.00 0.00 2.69
3520 4813 5.943416 ACTCCATTCCGTGACAATATTCAAA 59.057 36.000 0.00 0.00 0.00 2.69
3521 4814 6.432783 ACTCCATTCCGTGACAATATTCAAAA 59.567 34.615 0.00 0.00 0.00 2.44
3522 4815 7.040062 ACTCCATTCCGTGACAATATTCAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
3589 4882 9.906660 TGAATTTACTACATAAGTTTTGGCAAG 57.093 29.630 0.00 0.00 39.80 4.01
3590 4883 9.353999 GAATTTACTACATAAGTTTTGGCAAGG 57.646 33.333 0.00 0.00 39.80 3.61
3591 4884 4.783764 ACTACATAAGTTTTGGCAAGGC 57.216 40.909 0.00 0.00 33.35 4.35
3592 4885 4.148838 ACTACATAAGTTTTGGCAAGGCA 58.851 39.130 0.00 0.00 33.35 4.75
3593 4886 4.772100 ACTACATAAGTTTTGGCAAGGCAT 59.228 37.500 0.00 0.00 33.35 4.40
3594 4887 5.949354 ACTACATAAGTTTTGGCAAGGCATA 59.051 36.000 0.00 0.00 33.35 3.14
3595 4888 5.072040 ACATAAGTTTTGGCAAGGCATAC 57.928 39.130 0.00 0.00 0.00 2.39
3596 4889 2.723124 AAGTTTTGGCAAGGCATACG 57.277 45.000 0.00 0.00 0.00 3.06
3597 4890 1.616159 AGTTTTGGCAAGGCATACGT 58.384 45.000 0.00 0.00 0.00 3.57
3598 4891 2.785562 AGTTTTGGCAAGGCATACGTA 58.214 42.857 0.00 0.00 0.00 3.57
3599 4892 3.352648 AGTTTTGGCAAGGCATACGTAT 58.647 40.909 1.14 1.14 0.00 3.06
3600 4893 4.519213 AGTTTTGGCAAGGCATACGTATA 58.481 39.130 7.96 0.00 0.00 1.47
3601 4894 4.944930 AGTTTTGGCAAGGCATACGTATAA 59.055 37.500 7.96 0.00 0.00 0.98
3602 4895 5.416326 AGTTTTGGCAAGGCATACGTATAAA 59.584 36.000 7.96 0.00 0.00 1.40
3603 4896 6.096282 AGTTTTGGCAAGGCATACGTATAAAT 59.904 34.615 7.96 0.00 0.00 1.40
3604 4897 6.458232 TTTGGCAAGGCATACGTATAAATT 57.542 33.333 7.96 0.32 0.00 1.82
3605 4898 5.431420 TGGCAAGGCATACGTATAAATTG 57.569 39.130 7.96 13.16 0.00 2.32
3606 4899 4.226761 GGCAAGGCATACGTATAAATTGC 58.773 43.478 26.65 26.65 40.70 3.56
3607 4900 4.261405 GGCAAGGCATACGTATAAATTGCA 60.261 41.667 30.87 2.98 42.63 4.08
3608 4901 5.460646 GCAAGGCATACGTATAAATTGCAT 58.539 37.500 28.15 17.78 41.00 3.96
3609 4902 5.343058 GCAAGGCATACGTATAAATTGCATG 59.657 40.000 28.15 21.50 41.00 4.06
3610 4903 6.667370 CAAGGCATACGTATAAATTGCATGA 58.333 36.000 17.26 0.00 35.04 3.07
3611 4904 7.307694 CAAGGCATACGTATAAATTGCATGAT 58.692 34.615 17.26 0.00 35.04 2.45
3612 4905 7.076842 AGGCATACGTATAAATTGCATGATC 57.923 36.000 17.26 2.84 35.04 2.92
3613 4906 5.959527 GGCATACGTATAAATTGCATGATCG 59.040 40.000 17.26 0.00 35.04 3.69
3614 4907 6.183360 GGCATACGTATAAATTGCATGATCGA 60.183 38.462 17.26 0.00 35.04 3.59
3615 4908 7.233689 GCATACGTATAAATTGCATGATCGAA 58.766 34.615 7.96 0.00 33.58 3.71
3616 4909 7.744276 GCATACGTATAAATTGCATGATCGAAA 59.256 33.333 7.96 0.00 33.58 3.46
3617 4910 9.759259 CATACGTATAAATTGCATGATCGAAAT 57.241 29.630 7.96 0.00 0.00 2.17
3650 4943 9.549078 TCTTAATATTTACATGCGTATGTTCCA 57.451 29.630 24.19 9.21 45.01 3.53
3655 4948 6.795098 TTTACATGCGTATGTTCCATATCC 57.205 37.500 24.19 0.00 45.01 2.59
3656 4949 4.623932 ACATGCGTATGTTCCATATCCT 57.376 40.909 13.79 0.00 45.01 3.24
3657 4950 4.973168 ACATGCGTATGTTCCATATCCTT 58.027 39.130 13.79 0.00 45.01 3.36
3658 4951 6.109156 ACATGCGTATGTTCCATATCCTTA 57.891 37.500 13.79 0.00 45.01 2.69
3659 4952 6.166279 ACATGCGTATGTTCCATATCCTTAG 58.834 40.000 13.79 0.00 45.01 2.18
3660 4953 5.801531 TGCGTATGTTCCATATCCTTAGT 57.198 39.130 0.00 0.00 0.00 2.24
3661 4954 5.538118 TGCGTATGTTCCATATCCTTAGTG 58.462 41.667 0.00 0.00 0.00 2.74
3662 4955 5.069914 TGCGTATGTTCCATATCCTTAGTGT 59.930 40.000 0.00 0.00 0.00 3.55
3663 4956 5.405571 GCGTATGTTCCATATCCTTAGTGTG 59.594 44.000 0.00 0.00 0.00 3.82
3664 4957 5.926542 CGTATGTTCCATATCCTTAGTGTGG 59.073 44.000 0.00 0.00 0.00 4.17
3665 4958 5.975988 ATGTTCCATATCCTTAGTGTGGT 57.024 39.130 0.00 0.00 0.00 4.16
3666 4959 7.255695 CGTATGTTCCATATCCTTAGTGTGGTA 60.256 40.741 0.00 0.00 0.00 3.25
3667 4960 6.479972 TGTTCCATATCCTTAGTGTGGTAG 57.520 41.667 0.00 0.00 0.00 3.18
3668 4961 6.199376 TGTTCCATATCCTTAGTGTGGTAGA 58.801 40.000 0.00 0.00 0.00 2.59
3669 4962 6.670464 TGTTCCATATCCTTAGTGTGGTAGAA 59.330 38.462 0.00 0.00 0.00 2.10
3670 4963 7.181305 TGTTCCATATCCTTAGTGTGGTAGAAA 59.819 37.037 0.00 0.00 0.00 2.52
3671 4964 7.743116 TCCATATCCTTAGTGTGGTAGAAAA 57.257 36.000 0.00 0.00 0.00 2.29
3672 4965 8.153221 TCCATATCCTTAGTGTGGTAGAAAAA 57.847 34.615 0.00 0.00 0.00 1.94
3673 4966 8.778059 TCCATATCCTTAGTGTGGTAGAAAAAT 58.222 33.333 0.00 0.00 0.00 1.82
3697 4990 9.783256 AATATAGTATTTTGTTTTCTTGACCGC 57.217 29.630 0.00 0.00 0.00 5.68
3698 4991 4.866921 AGTATTTTGTTTTCTTGACCGCC 58.133 39.130 0.00 0.00 0.00 6.13
3699 4992 3.810310 ATTTTGTTTTCTTGACCGCCA 57.190 38.095 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.020928 TGGATAGCTACGTCTTGTTGGAAA 60.021 41.667 0.00 0.00 0.00 3.13
8 9 3.512329 TGGATAGCTACGTCTTGTTGGAA 59.488 43.478 0.00 0.00 0.00 3.53
9 10 3.093814 TGGATAGCTACGTCTTGTTGGA 58.906 45.455 0.00 0.00 0.00 3.53
10 11 3.520290 TGGATAGCTACGTCTTGTTGG 57.480 47.619 0.00 0.00 0.00 3.77
11 12 3.307242 GCTTGGATAGCTACGTCTTGTTG 59.693 47.826 0.00 0.00 46.77 3.33
12 13 3.522553 GCTTGGATAGCTACGTCTTGTT 58.477 45.455 0.00 0.00 46.77 2.83
13 14 3.166489 GCTTGGATAGCTACGTCTTGT 57.834 47.619 0.00 0.00 46.77 3.16
24 25 0.739462 TGCCGTCGTTGCTTGGATAG 60.739 55.000 0.00 0.00 0.00 2.08
25 26 0.739462 CTGCCGTCGTTGCTTGGATA 60.739 55.000 0.00 0.00 0.00 2.59
26 27 2.031919 TGCCGTCGTTGCTTGGAT 59.968 55.556 0.00 0.00 0.00 3.41
27 28 2.664851 CTGCCGTCGTTGCTTGGA 60.665 61.111 0.00 0.00 0.00 3.53
28 29 3.726517 CCTGCCGTCGTTGCTTGG 61.727 66.667 0.00 0.00 0.00 3.61
29 30 3.726517 CCCTGCCGTCGTTGCTTG 61.727 66.667 0.00 0.00 0.00 4.01
30 31 4.250305 ACCCTGCCGTCGTTGCTT 62.250 61.111 0.00 0.00 0.00 3.91
31 32 4.988598 CACCCTGCCGTCGTTGCT 62.989 66.667 0.00 0.00 0.00 3.91
32 33 4.980805 TCACCCTGCCGTCGTTGC 62.981 66.667 0.00 0.00 0.00 4.17
40 41 1.979155 GGGCTCTTTTCACCCTGCC 60.979 63.158 0.00 0.00 40.75 4.85
41 42 2.335712 CGGGCTCTTTTCACCCTGC 61.336 63.158 0.00 0.00 41.86 4.85
44 45 1.017701 CGTACGGGCTCTTTTCACCC 61.018 60.000 7.57 0.00 40.51 4.61
46 47 1.458445 GAACGTACGGGCTCTTTTCAC 59.542 52.381 21.06 0.00 0.00 3.18
49 50 1.792006 CAGAACGTACGGGCTCTTTT 58.208 50.000 21.06 2.12 0.00 2.27
53 54 2.508663 GGCAGAACGTACGGGCTC 60.509 66.667 21.06 12.67 0.00 4.70
55 56 2.813908 CAGGCAGAACGTACGGGC 60.814 66.667 21.06 16.29 0.00 6.13
68 69 1.365368 GCGGAGAGAAAAGCTCAGGC 61.365 60.000 0.00 0.00 46.45 4.85
69 70 0.742635 GGCGGAGAGAAAAGCTCAGG 60.743 60.000 0.00 0.00 46.45 3.86
72 73 0.036858 AGTGGCGGAGAGAAAAGCTC 60.037 55.000 0.00 0.00 44.29 4.09
75 76 3.198872 GGAATAGTGGCGGAGAGAAAAG 58.801 50.000 0.00 0.00 0.00 2.27
86 87 3.444034 GGAACTCTTTTGGGAATAGTGGC 59.556 47.826 0.00 0.00 0.00 5.01
87 88 4.017126 GGGAACTCTTTTGGGAATAGTGG 58.983 47.826 0.00 0.00 0.00 4.00
88 89 4.017126 GGGGAACTCTTTTGGGAATAGTG 58.983 47.826 0.00 0.00 0.00 2.74
95 96 1.202891 AGAACGGGGAACTCTTTTGGG 60.203 52.381 0.00 0.00 0.00 4.12
99 100 3.570912 TTCAAGAACGGGGAACTCTTT 57.429 42.857 0.00 0.00 0.00 2.52
102 103 4.127907 GGATATTCAAGAACGGGGAACTC 58.872 47.826 0.00 0.00 0.00 3.01
103 104 3.431766 CGGATATTCAAGAACGGGGAACT 60.432 47.826 0.00 0.00 0.00 3.01
104 105 2.870411 CGGATATTCAAGAACGGGGAAC 59.130 50.000 0.00 0.00 0.00 3.62
105 106 2.158871 CCGGATATTCAAGAACGGGGAA 60.159 50.000 0.00 0.00 37.80 3.97
111 112 2.540101 CTGCGACCGGATATTCAAGAAC 59.460 50.000 9.46 0.00 0.00 3.01
114 115 2.225068 ACTGCGACCGGATATTCAAG 57.775 50.000 9.46 0.00 0.00 3.02
118 119 1.474498 GGGAAACTGCGACCGGATATT 60.474 52.381 9.46 0.00 0.00 1.28
120 121 1.259142 TGGGAAACTGCGACCGGATA 61.259 55.000 9.46 0.00 0.00 2.59
121 122 2.267961 GGGAAACTGCGACCGGAT 59.732 61.111 9.46 0.00 0.00 4.18
123 124 3.047877 GTGGGAAACTGCGACCGG 61.048 66.667 0.00 0.00 0.00 5.28
132 133 3.194005 TGAAGAGTGACAGTGGGAAAC 57.806 47.619 0.00 0.00 0.00 2.78
137 139 4.320057 GCTGAAAATGAAGAGTGACAGTGG 60.320 45.833 0.00 0.00 0.00 4.00
138 140 4.610007 CGCTGAAAATGAAGAGTGACAGTG 60.610 45.833 0.00 0.00 0.00 3.66
143 145 5.989168 TCTTAACGCTGAAAATGAAGAGTGA 59.011 36.000 0.00 0.00 0.00 3.41
144 146 6.228273 TCTTAACGCTGAAAATGAAGAGTG 57.772 37.500 0.00 0.00 0.00 3.51
156 158 3.306703 ACGTTTCGTTTTCTTAACGCTGA 59.693 39.130 0.00 0.00 45.12 4.26
159 161 3.344852 ACACGTTTCGTTTTCTTAACGC 58.655 40.909 0.00 0.00 45.12 4.84
209 211 3.229293 TGGAATCTTGATTGCACCAACA 58.771 40.909 12.38 0.00 0.00 3.33
213 215 4.488879 GAAACTGGAATCTTGATTGCACC 58.511 43.478 12.38 3.69 0.00 5.01
225 227 4.248859 CATGTCTCTCACGAAACTGGAAT 58.751 43.478 0.00 0.00 0.00 3.01
230 232 4.322080 TGAACATGTCTCTCACGAAACT 57.678 40.909 0.00 0.00 0.00 2.66
244 246 3.444916 GCTGATTGCCTTGATGAACATG 58.555 45.455 0.00 0.00 35.15 3.21
257 262 2.760092 TGAGGGTTAATTGGCTGATTGC 59.240 45.455 0.00 0.00 41.94 3.56
262 267 7.334171 CCTTTATTTTTGAGGGTTAATTGGCTG 59.666 37.037 0.00 0.00 0.00 4.85
264 269 6.093495 GCCTTTATTTTTGAGGGTTAATTGGC 59.907 38.462 0.00 0.00 0.00 4.52
265 270 7.164803 TGCCTTTATTTTTGAGGGTTAATTGG 58.835 34.615 0.00 0.00 0.00 3.16
267 272 9.448438 GATTGCCTTTATTTTTGAGGGTTAATT 57.552 29.630 0.00 0.00 0.00 1.40
268 273 8.601546 TGATTGCCTTTATTTTTGAGGGTTAAT 58.398 29.630 0.00 0.00 0.00 1.40
269 274 7.967908 TGATTGCCTTTATTTTTGAGGGTTAA 58.032 30.769 0.00 0.00 0.00 2.01
270 275 7.546250 TGATTGCCTTTATTTTTGAGGGTTA 57.454 32.000 0.00 0.00 0.00 2.85
271 276 6.432403 TGATTGCCTTTATTTTTGAGGGTT 57.568 33.333 0.00 0.00 0.00 4.11
272 277 5.569428 GCTGATTGCCTTTATTTTTGAGGGT 60.569 40.000 0.00 0.00 35.15 4.34
288 293 2.855953 GCGTGTATGATTGGCTGATTGC 60.856 50.000 0.00 0.00 41.94 3.56
289 294 2.600556 CGCGTGTATGATTGGCTGATTG 60.601 50.000 0.00 0.00 0.00 2.67
290 295 1.599071 CGCGTGTATGATTGGCTGATT 59.401 47.619 0.00 0.00 0.00 2.57
291 296 1.220529 CGCGTGTATGATTGGCTGAT 58.779 50.000 0.00 0.00 0.00 2.90
292 297 1.428370 GCGCGTGTATGATTGGCTGA 61.428 55.000 8.43 0.00 0.00 4.26
293 298 1.010797 GCGCGTGTATGATTGGCTG 60.011 57.895 8.43 0.00 0.00 4.85
294 299 2.525248 CGCGCGTGTATGATTGGCT 61.525 57.895 24.19 0.00 0.00 4.75
295 300 2.053116 CGCGCGTGTATGATTGGC 60.053 61.111 24.19 0.00 0.00 4.52
296 301 2.053116 GCGCGCGTGTATGATTGG 60.053 61.111 32.35 0.00 0.00 3.16
297 302 2.421932 CGCGCGCGTGTATGATTG 60.422 61.111 42.49 13.34 34.35 2.67
298 303 2.576893 CTCGCGCGCGTGTATGATT 61.577 57.895 46.54 0.00 40.74 2.57
299 304 3.024609 CTCGCGCGCGTGTATGAT 61.025 61.111 46.54 0.00 40.74 2.45
310 315 4.064491 GTGTGTGTCTGCTCGCGC 62.064 66.667 0.00 0.00 0.00 6.86
311 316 2.658268 TGTGTGTGTCTGCTCGCG 60.658 61.111 0.00 0.00 0.00 5.87
312 317 1.825285 CTGTGTGTGTGTCTGCTCGC 61.825 60.000 0.00 0.00 0.00 5.03
313 318 1.217585 CCTGTGTGTGTGTCTGCTCG 61.218 60.000 0.00 0.00 0.00 5.03
314 319 0.104855 TCCTGTGTGTGTGTCTGCTC 59.895 55.000 0.00 0.00 0.00 4.26
315 320 0.105593 CTCCTGTGTGTGTGTCTGCT 59.894 55.000 0.00 0.00 0.00 4.24
316 321 0.882042 CCTCCTGTGTGTGTGTCTGC 60.882 60.000 0.00 0.00 0.00 4.26
317 322 0.752658 TCCTCCTGTGTGTGTGTCTG 59.247 55.000 0.00 0.00 0.00 3.51
318 323 0.753262 GTCCTCCTGTGTGTGTGTCT 59.247 55.000 0.00 0.00 0.00 3.41
319 324 0.249911 GGTCCTCCTGTGTGTGTGTC 60.250 60.000 0.00 0.00 0.00 3.67
320 325 0.980754 TGGTCCTCCTGTGTGTGTGT 60.981 55.000 0.00 0.00 34.23 3.72
321 326 0.397941 ATGGTCCTCCTGTGTGTGTG 59.602 55.000 0.00 0.00 34.23 3.82
322 327 1.072331 GAATGGTCCTCCTGTGTGTGT 59.928 52.381 0.00 0.00 34.23 3.72
325 330 0.321671 ACGAATGGTCCTCCTGTGTG 59.678 55.000 0.00 0.00 34.23 3.82
359 364 4.879545 GGGTTAATGCTCGTAGATCCAAAA 59.120 41.667 0.00 0.00 33.89 2.44
367 372 6.937436 AATTAAAGGGGTTAATGCTCGTAG 57.063 37.500 0.00 0.00 40.79 3.51
386 391 9.923143 CTATAACATCACGGTCAGGAATAATTA 57.077 33.333 0.00 0.00 0.00 1.40
420 425 5.615692 AGGGTAAATAATTAGGAAGGGAGGG 59.384 44.000 0.00 0.00 0.00 4.30
424 429 8.832458 TTTTCAGGGTAAATAATTAGGAAGGG 57.168 34.615 0.00 0.00 0.00 3.95
440 457 3.570912 TCCGTCTTTTCTTTTCAGGGT 57.429 42.857 0.00 0.00 0.00 4.34
448 465 3.751698 GTGCAGGTATTCCGTCTTTTCTT 59.248 43.478 0.00 0.00 39.05 2.52
449 466 3.244422 TGTGCAGGTATTCCGTCTTTTCT 60.244 43.478 0.00 0.00 39.05 2.52
450 467 3.071479 TGTGCAGGTATTCCGTCTTTTC 58.929 45.455 0.00 0.00 39.05 2.29
451 468 2.812011 GTGTGCAGGTATTCCGTCTTTT 59.188 45.455 0.00 0.00 39.05 2.27
452 469 2.038557 AGTGTGCAGGTATTCCGTCTTT 59.961 45.455 0.00 0.00 39.05 2.52
453 470 1.623811 AGTGTGCAGGTATTCCGTCTT 59.376 47.619 0.00 0.00 39.05 3.01
454 471 1.267121 AGTGTGCAGGTATTCCGTCT 58.733 50.000 0.00 0.00 39.05 4.18
455 472 2.094762 AAGTGTGCAGGTATTCCGTC 57.905 50.000 0.00 0.00 39.05 4.79
456 473 2.038557 AGAAAGTGTGCAGGTATTCCGT 59.961 45.455 0.00 0.00 39.05 4.69
457 474 2.416547 CAGAAAGTGTGCAGGTATTCCG 59.583 50.000 0.00 0.00 39.05 4.30
458 475 3.674997 TCAGAAAGTGTGCAGGTATTCC 58.325 45.455 0.00 0.00 0.00 3.01
460 477 4.516698 CAGTTCAGAAAGTGTGCAGGTATT 59.483 41.667 0.00 0.00 32.16 1.89
462 479 3.118408 ACAGTTCAGAAAGTGTGCAGGTA 60.118 43.478 0.00 0.00 45.29 3.08
463 480 2.292267 CAGTTCAGAAAGTGTGCAGGT 58.708 47.619 0.00 0.00 32.16 4.00
464 481 2.292267 ACAGTTCAGAAAGTGTGCAGG 58.708 47.619 0.00 0.00 45.29 4.85
465 482 3.374988 TGAACAGTTCAGAAAGTGTGCAG 59.625 43.478 12.24 0.00 45.56 4.41
467 484 4.035558 TCATGAACAGTTCAGAAAGTGTGC 59.964 41.667 20.55 0.00 46.10 4.57
483 500 4.608445 CGTCCGTCTTGTTCTTTCATGAAC 60.608 45.833 7.89 0.00 44.60 3.18
488 505 2.589798 ACGTCCGTCTTGTTCTTTCA 57.410 45.000 0.00 0.00 0.00 2.69
501 518 6.764877 AATTGCATAAAGATACTACGTCCG 57.235 37.500 0.00 0.00 0.00 4.79
538 555 7.613022 TCAGAACCTCATTTGATTTGCTATCTT 59.387 33.333 0.00 0.00 0.00 2.40
540 557 7.325660 TCAGAACCTCATTTGATTTGCTATC 57.674 36.000 0.00 0.00 0.00 2.08
542 559 6.885918 TGATCAGAACCTCATTTGATTTGCTA 59.114 34.615 0.00 0.00 30.85 3.49
553 570 3.996921 ACTGCTTGATCAGAACCTCAT 57.003 42.857 0.00 0.00 37.51 2.90
554 571 3.834813 ACTACTGCTTGATCAGAACCTCA 59.165 43.478 0.00 0.00 37.51 3.86
555 572 4.464069 ACTACTGCTTGATCAGAACCTC 57.536 45.455 0.00 0.00 37.51 3.85
556 573 4.142359 CGTACTACTGCTTGATCAGAACCT 60.142 45.833 0.00 0.00 37.51 3.50
558 575 4.734917 ACGTACTACTGCTTGATCAGAAC 58.265 43.478 0.00 0.00 37.51 3.01
559 576 6.694877 ATACGTACTACTGCTTGATCAGAA 57.305 37.500 0.00 0.00 37.51 3.02
560 577 7.797038 TTATACGTACTACTGCTTGATCAGA 57.203 36.000 0.00 0.00 37.51 3.27
562 579 8.290325 CAGATTATACGTACTACTGCTTGATCA 58.710 37.037 0.00 0.00 0.00 2.92
563 580 7.271653 GCAGATTATACGTACTACTGCTTGATC 59.728 40.741 24.80 10.20 43.54 2.92
564 581 7.085116 GCAGATTATACGTACTACTGCTTGAT 58.915 38.462 24.80 3.16 43.54 2.57
565 582 6.038936 TGCAGATTATACGTACTACTGCTTGA 59.961 38.462 28.36 16.51 45.91 3.02
566 583 6.142480 GTGCAGATTATACGTACTACTGCTTG 59.858 42.308 28.36 12.31 45.91 4.01
567 584 6.207213 GTGCAGATTATACGTACTACTGCTT 58.793 40.000 28.36 6.80 45.91 3.91
568 585 5.278364 GGTGCAGATTATACGTACTACTGCT 60.278 44.000 28.36 10.97 45.91 4.24
569 586 4.916249 GGTGCAGATTATACGTACTACTGC 59.084 45.833 25.08 25.08 45.92 4.40
570 587 5.458891 GGGTGCAGATTATACGTACTACTG 58.541 45.833 0.00 6.94 0.00 2.74
571 588 4.214971 CGGGTGCAGATTATACGTACTACT 59.785 45.833 0.00 0.00 0.00 2.57
572 589 4.023707 ACGGGTGCAGATTATACGTACTAC 60.024 45.833 0.00 0.00 0.00 2.73
573 590 4.136796 ACGGGTGCAGATTATACGTACTA 58.863 43.478 0.00 0.00 0.00 1.82
574 591 2.954318 ACGGGTGCAGATTATACGTACT 59.046 45.455 0.00 0.00 0.00 2.73
575 592 3.360249 ACGGGTGCAGATTATACGTAC 57.640 47.619 0.00 0.00 0.00 3.67
576 593 4.114073 CAAACGGGTGCAGATTATACGTA 58.886 43.478 0.00 0.00 32.35 3.57
577 594 2.933906 CAAACGGGTGCAGATTATACGT 59.066 45.455 0.00 0.00 34.25 3.57
578 595 2.286833 CCAAACGGGTGCAGATTATACG 59.713 50.000 0.00 0.00 0.00 3.06
582 599 0.250945 TGCCAAACGGGTGCAGATTA 60.251 50.000 0.00 0.00 39.65 1.75
589 606 3.198236 CTGCACTGCCAAACGGGTG 62.198 63.158 0.00 0.00 39.65 4.61
601 618 0.982704 AAGTGAGATGAGGCTGCACT 59.017 50.000 0.50 0.00 41.19 4.40
605 622 2.662006 TCGAAAGTGAGATGAGGCTG 57.338 50.000 0.00 0.00 0.00 4.85
609 626 3.808466 TCCCATCGAAAGTGAGATGAG 57.192 47.619 6.97 0.00 45.08 2.90
610 627 4.760530 ATTCCCATCGAAAGTGAGATGA 57.239 40.909 6.97 0.00 45.08 2.92
611 628 5.237344 GGTAATTCCCATCGAAAGTGAGATG 59.763 44.000 0.00 0.00 42.71 2.90
612 629 5.104527 TGGTAATTCCCATCGAAAGTGAGAT 60.105 40.000 0.00 0.00 33.08 2.75
627 644 1.816074 TGCTCCGTTGTGGTAATTCC 58.184 50.000 0.00 0.00 39.52 3.01
638 655 3.608474 GCGTTTAAATGACTTGCTCCGTT 60.608 43.478 11.68 0.00 0.00 4.44
639 656 2.095919 GCGTTTAAATGACTTGCTCCGT 60.096 45.455 11.68 0.00 0.00 4.69
640 657 2.095969 TGCGTTTAAATGACTTGCTCCG 60.096 45.455 11.68 0.00 0.00 4.63
680 697 1.002366 CTGATGTAACGAGCAGCACC 58.998 55.000 0.00 0.00 0.00 5.01
682 699 1.546029 AGACTGATGTAACGAGCAGCA 59.454 47.619 0.00 0.00 31.74 4.41
708 1810 4.202223 GGAGTTAATATGGCGGTTGAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
807 1909 3.858503 GCTTCAGAAAATGGGTCACAAGC 60.859 47.826 0.00 0.00 0.00 4.01
808 1910 3.571401 AGCTTCAGAAAATGGGTCACAAG 59.429 43.478 0.00 0.00 0.00 3.16
809 1911 3.565307 AGCTTCAGAAAATGGGTCACAA 58.435 40.909 0.00 0.00 0.00 3.33
810 1912 3.228188 AGCTTCAGAAAATGGGTCACA 57.772 42.857 0.00 0.00 0.00 3.58
811 1913 3.319122 ACAAGCTTCAGAAAATGGGTCAC 59.681 43.478 0.00 0.00 0.00 3.67
812 1914 3.318839 CACAAGCTTCAGAAAATGGGTCA 59.681 43.478 0.00 0.00 0.00 4.02
813 1915 3.569701 TCACAAGCTTCAGAAAATGGGTC 59.430 43.478 0.00 0.00 0.00 4.46
814 1916 3.565307 TCACAAGCTTCAGAAAATGGGT 58.435 40.909 0.00 0.00 0.00 4.51
815 1917 3.613432 GCTCACAAGCTTCAGAAAATGGG 60.613 47.826 0.00 0.00 45.55 4.00
816 1918 3.572584 GCTCACAAGCTTCAGAAAATGG 58.427 45.455 0.00 0.00 45.55 3.16
915 2043 3.561143 CTCCTCACATGGTAGAGTAGCT 58.439 50.000 0.00 0.00 0.00 3.32
916 2044 2.035321 GCTCCTCACATGGTAGAGTAGC 59.965 54.545 11.70 11.70 36.82 3.58
917 2045 3.561143 AGCTCCTCACATGGTAGAGTAG 58.439 50.000 0.00 0.00 0.00 2.57
918 2046 3.053619 TGAGCTCCTCACATGGTAGAGTA 60.054 47.826 12.15 0.00 35.39 2.59
919 2047 2.291865 TGAGCTCCTCACATGGTAGAGT 60.292 50.000 12.15 0.00 35.39 3.24
920 2048 2.361757 CTGAGCTCCTCACATGGTAGAG 59.638 54.545 12.15 1.28 35.39 2.43
970 2098 1.739667 GTGGTGCAAGGGGAAACAC 59.260 57.895 0.00 0.00 0.00 3.32
971 2099 1.456705 GGTGGTGCAAGGGGAAACA 60.457 57.895 0.00 0.00 0.00 2.83
972 2100 2.561037 CGGTGGTGCAAGGGGAAAC 61.561 63.158 0.00 0.00 0.00 2.78
1016 2151 4.213059 GCTGAGCTGAGCTATTTTGGATAC 59.787 45.833 18.71 0.00 39.88 2.24
1081 2221 2.584064 CCATGGCGTGGTGCTCTA 59.416 61.111 17.89 0.00 43.44 2.43
1475 2621 2.591429 TCCTGCGTGCTGGTGTTG 60.591 61.111 16.06 0.00 36.57 3.33
1483 2629 4.687215 TCACCTGCTCCTGCGTGC 62.687 66.667 0.00 0.00 43.34 5.34
1508 2654 5.466819 CAATGATTCACAACAGAACTGCAT 58.533 37.500 1.46 0.00 0.00 3.96
1555 2704 4.593956 AGTGGGATCAAATCTTCAGAACC 58.406 43.478 0.00 0.00 0.00 3.62
1572 2721 2.100197 TGAGGTATCAAGACGAGTGGG 58.900 52.381 0.00 0.00 30.61 4.61
1590 2739 9.618890 TCTCTCTTCTCTTTTTCTTTTGATTGA 57.381 29.630 0.00 0.00 0.00 2.57
1591 2740 9.881529 CTCTCTCTTCTCTTTTTCTTTTGATTG 57.118 33.333 0.00 0.00 0.00 2.67
1592 2741 9.065798 CCTCTCTCTTCTCTTTTTCTTTTGATT 57.934 33.333 0.00 0.00 0.00 2.57
1593 2742 8.435982 TCCTCTCTCTTCTCTTTTTCTTTTGAT 58.564 33.333 0.00 0.00 0.00 2.57
1613 2762 8.818860 TCTCTACCTACTCTGTATATTCCTCTC 58.181 40.741 0.00 0.00 0.00 3.20
1734 2883 6.095300 TGTCATCATTGTATTTCCGCATCTTT 59.905 34.615 0.00 0.00 0.00 2.52
1764 2913 5.411361 TCCACACAAAAGATACTGCATGTAC 59.589 40.000 0.00 0.00 33.45 2.90
1766 2915 4.397420 TCCACACAAAAGATACTGCATGT 58.603 39.130 0.00 0.00 0.00 3.21
1767 2916 5.375417 TTCCACACAAAAGATACTGCATG 57.625 39.130 0.00 0.00 0.00 4.06
1768 2917 5.711506 TCATTCCACACAAAAGATACTGCAT 59.288 36.000 0.00 0.00 0.00 3.96
1769 2918 5.069318 TCATTCCACACAAAAGATACTGCA 58.931 37.500 0.00 0.00 0.00 4.41
1808 2959 7.389330 ACATCAATCTGTTTTGGAATACGTGTA 59.611 33.333 0.00 0.00 0.00 2.90
1843 2994 5.009710 TGCAAGTAGAGTAGAATCCATACGG 59.990 44.000 0.00 0.00 0.00 4.02
1844 2995 6.073327 TGCAAGTAGAGTAGAATCCATACG 57.927 41.667 0.00 0.00 0.00 3.06
1891 3042 2.224281 ACACTCTGAATCAAACGAGGCA 60.224 45.455 0.00 0.00 0.00 4.75
1897 3048 3.316308 AGCAACCACACTCTGAATCAAAC 59.684 43.478 0.00 0.00 0.00 2.93
1927 3098 8.743714 CAAACCAATTTAGGAGAGAGCTTAATT 58.256 33.333 0.00 0.00 0.00 1.40
1943 3114 0.312729 GACGACCGGCAAACCAATTT 59.687 50.000 0.00 0.00 34.57 1.82
1948 3119 2.968697 AACGACGACCGGCAAACC 60.969 61.111 0.00 0.00 43.93 3.27
1949 3120 2.247267 CAACGACGACCGGCAAAC 59.753 61.111 0.00 0.00 43.93 2.93
1955 3126 3.403057 CACCTGCAACGACGACCG 61.403 66.667 0.00 0.00 45.44 4.79
1960 3131 2.203153 ACCACCACCTGCAACGAC 60.203 61.111 0.00 0.00 0.00 4.34
2048 3219 3.817647 GAGATGTTTCTTGGTGCTCACTT 59.182 43.478 0.00 0.00 30.30 3.16
2051 3222 3.071457 TCAGAGATGTTTCTTGGTGCTCA 59.929 43.478 0.00 0.00 30.30 4.26
2052 3223 3.668447 TCAGAGATGTTTCTTGGTGCTC 58.332 45.455 0.00 0.00 30.30 4.26
2053 3224 3.777106 TCAGAGATGTTTCTTGGTGCT 57.223 42.857 0.00 0.00 30.30 4.40
2054 3225 4.276926 AGTTTCAGAGATGTTTCTTGGTGC 59.723 41.667 0.00 0.00 30.30 5.01
2055 3226 6.382869 AAGTTTCAGAGATGTTTCTTGGTG 57.617 37.500 0.00 0.00 30.30 4.17
2056 3227 7.410120 AAAAGTTTCAGAGATGTTTCTTGGT 57.590 32.000 0.00 0.00 30.30 3.67
2057 3228 8.193438 AGAAAAAGTTTCAGAGATGTTTCTTGG 58.807 33.333 3.74 0.00 31.75 3.61
2058 3229 9.578439 AAGAAAAAGTTTCAGAGATGTTTCTTG 57.422 29.630 7.14 0.00 40.62 3.02
2059 3230 9.794685 GAAGAAAAAGTTTCAGAGATGTTTCTT 57.205 29.630 7.56 7.56 43.25 2.52
2060 3231 8.960591 TGAAGAAAAAGTTTCAGAGATGTTTCT 58.039 29.630 3.74 0.00 36.03 2.52
2071 3242 5.415701 ACTGTGCTCTGAAGAAAAAGTTTCA 59.584 36.000 3.74 0.00 32.75 2.69
2072 3243 5.884771 ACTGTGCTCTGAAGAAAAAGTTTC 58.115 37.500 0.00 0.00 0.00 2.78
2088 3259 1.230635 CGCAGCTTGGTTACTGTGCT 61.231 55.000 0.00 0.00 37.57 4.40
2089 3260 1.207593 CGCAGCTTGGTTACTGTGC 59.792 57.895 0.00 0.00 37.57 4.57
2091 3262 0.393077 AGACGCAGCTTGGTTACTGT 59.607 50.000 0.00 0.00 36.26 3.55
2092 3263 0.792640 CAGACGCAGCTTGGTTACTG 59.207 55.000 0.00 0.00 36.96 2.74
2093 3264 0.393077 ACAGACGCAGCTTGGTTACT 59.607 50.000 0.00 0.00 0.00 2.24
2094 3265 1.226746 AACAGACGCAGCTTGGTTAC 58.773 50.000 0.00 0.00 0.00 2.50
2152 3341 0.884704 CCACCACCGTCACCTTCTTG 60.885 60.000 0.00 0.00 0.00 3.02
2480 3678 3.701530 ATGTGCACGCGTGTCACG 61.702 61.111 37.00 21.02 45.88 4.35
2542 3740 0.792640 GAACACAGATCCACAGCACG 59.207 55.000 0.00 0.00 0.00 5.34
2555 3775 0.722282 CGAACACCAACACGAACACA 59.278 50.000 0.00 0.00 0.00 3.72
2556 3776 0.722848 ACGAACACCAACACGAACAC 59.277 50.000 0.00 0.00 0.00 3.32
2557 3777 1.000884 GACGAACACCAACACGAACA 58.999 50.000 0.00 0.00 0.00 3.18
2558 3778 1.257155 GAGACGAACACCAACACGAAC 59.743 52.381 0.00 0.00 0.00 3.95
2559 3779 1.563111 GAGACGAACACCAACACGAA 58.437 50.000 0.00 0.00 0.00 3.85
2560 3780 0.593008 CGAGACGAACACCAACACGA 60.593 55.000 0.00 0.00 0.00 4.35
2561 3781 0.868602 ACGAGACGAACACCAACACG 60.869 55.000 0.00 0.00 0.00 4.49
2562 3782 0.575390 CACGAGACGAACACCAACAC 59.425 55.000 0.00 0.00 0.00 3.32
2563 3783 0.456628 TCACGAGACGAACACCAACA 59.543 50.000 0.00 0.00 0.00 3.33
2564 3784 1.455786 CATCACGAGACGAACACCAAC 59.544 52.381 0.00 0.00 0.00 3.77
2565 3785 1.067974 ACATCACGAGACGAACACCAA 59.932 47.619 0.00 0.00 0.00 3.67
2566 3786 0.671796 ACATCACGAGACGAACACCA 59.328 50.000 0.00 0.00 0.00 4.17
2567 3787 1.060713 CACATCACGAGACGAACACC 58.939 55.000 0.00 0.00 0.00 4.16
2568 3788 1.767289 ACACATCACGAGACGAACAC 58.233 50.000 0.00 0.00 0.00 3.32
2569 3789 2.502213 AACACATCACGAGACGAACA 57.498 45.000 0.00 0.00 0.00 3.18
2570 3790 2.538449 ACAAACACATCACGAGACGAAC 59.462 45.455 0.00 0.00 0.00 3.95
2571 3791 2.816689 ACAAACACATCACGAGACGAA 58.183 42.857 0.00 0.00 0.00 3.85
2629 3849 1.244697 ACACACGCTCCGAGTCTCAT 61.245 55.000 0.00 0.00 0.00 2.90
2631 3851 0.733729 ATACACACGCTCCGAGTCTC 59.266 55.000 0.00 0.00 0.00 3.36
2648 3868 4.471904 AGATGAAACGAACAGAGCCATA 57.528 40.909 0.00 0.00 0.00 2.74
2649 3869 3.340814 AGATGAAACGAACAGAGCCAT 57.659 42.857 0.00 0.00 0.00 4.40
2650 3870 2.839486 AGATGAAACGAACAGAGCCA 57.161 45.000 0.00 0.00 0.00 4.75
2651 3871 3.330267 AGAAGATGAAACGAACAGAGCC 58.670 45.455 0.00 0.00 0.00 4.70
2665 3890 7.220491 CGCTCATATATTACAGCAGAGAAGATG 59.780 40.741 8.22 0.00 0.00 2.90
2666 3891 7.093988 ACGCTCATATATTACAGCAGAGAAGAT 60.094 37.037 8.22 0.00 0.00 2.40
2667 3892 6.207614 ACGCTCATATATTACAGCAGAGAAGA 59.792 38.462 8.22 0.00 0.00 2.87
2668 3893 6.385843 ACGCTCATATATTACAGCAGAGAAG 58.614 40.000 8.22 0.00 0.00 2.85
2670 3895 5.966742 ACGCTCATATATTACAGCAGAGA 57.033 39.130 8.22 0.00 0.00 3.10
2671 3896 6.642540 TGAAACGCTCATATATTACAGCAGAG 59.357 38.462 8.22 0.00 0.00 3.35
2673 3898 6.769608 TGAAACGCTCATATATTACAGCAG 57.230 37.500 8.22 4.67 0.00 4.24
2675 3900 7.011773 CACATGAAACGCTCATATATTACAGC 58.988 38.462 0.00 0.00 43.28 4.40
2694 3923 3.955775 CAGCACGTCTGCACATGA 58.044 55.556 0.00 0.00 46.97 3.07
2701 3930 3.542712 ATTTGTAAAGCAGCACGTCTG 57.457 42.857 9.73 9.73 45.62 3.51
2702 3931 3.315191 ACAATTTGTAAAGCAGCACGTCT 59.685 39.130 0.00 0.00 0.00 4.18
2703 3932 3.421888 CACAATTTGTAAAGCAGCACGTC 59.578 43.478 0.86 0.00 0.00 4.34
2704 3933 3.371168 CACAATTTGTAAAGCAGCACGT 58.629 40.909 0.86 0.00 0.00 4.49
2705 3934 2.725723 CCACAATTTGTAAAGCAGCACG 59.274 45.455 0.86 0.00 0.00 5.34
2706 3935 3.735746 GTCCACAATTTGTAAAGCAGCAC 59.264 43.478 0.86 0.00 0.00 4.40
2707 3936 3.636300 AGTCCACAATTTGTAAAGCAGCA 59.364 39.130 0.86 0.00 0.00 4.41
2708 3937 4.243007 AGTCCACAATTTGTAAAGCAGC 57.757 40.909 0.86 0.00 0.00 5.25
2709 3938 4.445385 GCAAGTCCACAATTTGTAAAGCAG 59.555 41.667 0.86 0.00 0.00 4.24
2710 3939 4.367450 GCAAGTCCACAATTTGTAAAGCA 58.633 39.130 0.86 0.00 0.00 3.91
2711 3940 3.425193 CGCAAGTCCACAATTTGTAAAGC 59.575 43.478 0.86 1.02 0.00 3.51
2712 3941 4.854399 TCGCAAGTCCACAATTTGTAAAG 58.146 39.130 0.86 0.00 39.48 1.85
2713 3942 4.902443 TCGCAAGTCCACAATTTGTAAA 57.098 36.364 0.86 0.00 39.48 2.01
2714 3943 4.759693 AGATCGCAAGTCCACAATTTGTAA 59.240 37.500 0.86 0.00 39.48 2.41
2715 3944 4.323417 AGATCGCAAGTCCACAATTTGTA 58.677 39.130 0.86 0.00 39.48 2.41
2716 3945 3.149196 AGATCGCAAGTCCACAATTTGT 58.851 40.909 0.00 0.00 39.48 2.83
2717 3946 3.725895 CGAGATCGCAAGTCCACAATTTG 60.726 47.826 0.00 0.00 39.48 2.32
2718 3947 2.416547 CGAGATCGCAAGTCCACAATTT 59.583 45.455 0.00 0.00 39.48 1.82
2719 3948 2.002586 CGAGATCGCAAGTCCACAATT 58.997 47.619 0.00 0.00 39.48 2.32
2720 3949 1.204704 TCGAGATCGCAAGTCCACAAT 59.795 47.619 0.00 0.00 39.60 2.71
2721 3950 0.601057 TCGAGATCGCAAGTCCACAA 59.399 50.000 0.00 0.00 39.60 3.33
2722 3951 0.601057 TTCGAGATCGCAAGTCCACA 59.399 50.000 0.00 0.00 39.60 4.17
2723 3952 1.272781 CTTCGAGATCGCAAGTCCAC 58.727 55.000 0.00 0.00 39.60 4.02
2724 3953 0.888619 ACTTCGAGATCGCAAGTCCA 59.111 50.000 11.62 0.00 36.06 4.02
2725 3954 1.135373 TCACTTCGAGATCGCAAGTCC 60.135 52.381 13.43 0.00 37.50 3.85
2726 3955 2.264109 TCACTTCGAGATCGCAAGTC 57.736 50.000 13.43 0.00 37.50 3.01
2727 3956 2.094494 ACATCACTTCGAGATCGCAAGT 60.094 45.455 11.62 11.62 38.90 3.16
2728 3957 2.534298 ACATCACTTCGAGATCGCAAG 58.466 47.619 0.00 5.35 39.60 4.01
2729 3958 2.654749 ACATCACTTCGAGATCGCAA 57.345 45.000 0.00 0.00 39.60 4.85
2730 3959 2.654749 AACATCACTTCGAGATCGCA 57.345 45.000 0.00 0.00 39.60 5.10
2731 3960 2.029728 CCAAACATCACTTCGAGATCGC 59.970 50.000 0.00 0.00 39.60 4.58
2732 3961 2.029728 GCCAAACATCACTTCGAGATCG 59.970 50.000 0.00 0.00 41.45 3.69
2733 3962 3.002791 TGCCAAACATCACTTCGAGATC 58.997 45.455 0.00 0.00 0.00 2.75
2734 3963 3.057969 TGCCAAACATCACTTCGAGAT 57.942 42.857 0.00 0.00 0.00 2.75
2735 3964 2.542020 TGCCAAACATCACTTCGAGA 57.458 45.000 0.00 0.00 0.00 4.04
2736 3965 3.243035 TGTTTGCCAAACATCACTTCGAG 60.243 43.478 18.60 0.00 45.79 4.04
2737 3966 2.685388 TGTTTGCCAAACATCACTTCGA 59.315 40.909 18.60 0.00 45.79 3.71
2738 3967 3.077229 TGTTTGCCAAACATCACTTCG 57.923 42.857 18.60 0.00 45.79 3.79
2747 3976 2.408050 TGTGTGTTGTGTTTGCCAAAC 58.592 42.857 13.35 13.35 41.73 2.93
2748 3977 2.802816 GTTGTGTGTTGTGTTTGCCAAA 59.197 40.909 0.00 0.00 0.00 3.28
2749 3978 2.036475 AGTTGTGTGTTGTGTTTGCCAA 59.964 40.909 0.00 0.00 0.00 4.52
2750 3979 1.615883 AGTTGTGTGTTGTGTTTGCCA 59.384 42.857 0.00 0.00 0.00 4.92
2751 3980 2.362169 AGTTGTGTGTTGTGTTTGCC 57.638 45.000 0.00 0.00 0.00 4.52
2752 3981 3.312828 TCAAGTTGTGTGTTGTGTTTGC 58.687 40.909 2.11 0.00 0.00 3.68
2753 3982 4.143347 GCTTCAAGTTGTGTGTTGTGTTTG 60.143 41.667 2.11 0.00 0.00 2.93
2754 3983 3.987220 GCTTCAAGTTGTGTGTTGTGTTT 59.013 39.130 2.11 0.00 0.00 2.83
2755 3984 3.255642 AGCTTCAAGTTGTGTGTTGTGTT 59.744 39.130 2.11 0.00 0.00 3.32
2756 3985 2.819608 AGCTTCAAGTTGTGTGTTGTGT 59.180 40.909 2.11 0.00 0.00 3.72
2757 3986 3.127548 AGAGCTTCAAGTTGTGTGTTGTG 59.872 43.478 2.11 0.00 0.00 3.33
2758 3987 3.347216 AGAGCTTCAAGTTGTGTGTTGT 58.653 40.909 2.11 0.00 0.00 3.32
2759 3988 4.361451 AAGAGCTTCAAGTTGTGTGTTG 57.639 40.909 2.11 0.00 0.00 3.33
2760 3989 5.880332 TCTAAAGAGCTTCAAGTTGTGTGTT 59.120 36.000 2.11 0.00 0.00 3.32
2761 3990 5.428253 TCTAAAGAGCTTCAAGTTGTGTGT 58.572 37.500 2.11 0.00 0.00 3.72
2762 3991 5.983475 CTCTAAAGAGCTTCAAGTTGTGTG 58.017 41.667 2.11 0.00 35.13 3.82
2799 4028 1.404477 GTGCGGACAAAATGAAACGG 58.596 50.000 0.63 0.00 0.00 4.44
2802 4031 0.658829 CGCGTGCGGACAAAATGAAA 60.659 50.000 8.11 0.00 35.56 2.69
2803 4032 1.082431 CGCGTGCGGACAAAATGAA 60.082 52.632 8.11 0.00 35.56 2.57
2817 4047 2.728383 CGAGACAAACGGACGCGT 60.728 61.111 13.85 13.85 30.99 6.01
2830 4060 0.248907 CTTTTCTATCCGCCGCGAGA 60.249 55.000 15.93 10.37 0.00 4.04
2831 4061 0.527817 ACTTTTCTATCCGCCGCGAG 60.528 55.000 15.93 3.74 0.00 5.03
2835 4066 1.488261 GCCGACTTTTCTATCCGCCG 61.488 60.000 0.00 0.00 0.00 6.46
2836 4067 1.158484 GGCCGACTTTTCTATCCGCC 61.158 60.000 0.00 0.00 33.14 6.13
2842 4073 0.952010 GCGTTGGGCCGACTTTTCTA 60.952 55.000 21.44 0.00 34.80 2.10
2866 4097 2.365823 GACGCGCGTCCATTTAAGA 58.634 52.632 44.30 0.00 39.08 2.10
2903 4134 1.570857 ATTGGGCCGAGAATGGGTCA 61.571 55.000 0.00 0.00 42.15 4.02
2943 4185 1.596954 GCGTCTGTTTTGTGTTCGCAT 60.597 47.619 0.00 0.00 41.42 4.73
2948 4190 0.027586 GCTCGCGTCTGTTTTGTGTT 59.972 50.000 5.77 0.00 0.00 3.32
2968 4212 3.902086 GAGGAGTAGGCGGGCGTC 61.902 72.222 0.00 0.00 0.00 5.19
3014 4261 2.172293 GTTGGAATGAGAGAGGATGGCT 59.828 50.000 0.00 0.00 0.00 4.75
3055 4302 2.126071 CGGCGGCGAAGAAGAAGA 60.126 61.111 29.19 0.00 0.00 2.87
3075 4322 4.360405 AGGCGCCGGAAAATGGGT 62.360 61.111 23.20 0.00 0.00 4.51
3202 4468 3.185299 TTGCGGTTGTGTCGGGGAT 62.185 57.895 0.00 0.00 0.00 3.85
3235 4523 1.523258 CAGGATGAAGGAGCTGGCG 60.523 63.158 0.00 0.00 39.69 5.69
3248 4536 4.760047 GCGTGCCGGTGTCAGGAT 62.760 66.667 1.90 0.00 0.00 3.24
3289 4577 4.003788 ACGCCCTCGGACCAACTG 62.004 66.667 0.00 0.00 40.69 3.16
3317 4608 0.894184 TCGAGAAAGAGCCGACCAGT 60.894 55.000 0.00 0.00 0.00 4.00
3332 4624 0.235665 AACAGTTTGCGTGCATCGAG 59.764 50.000 11.94 0.00 42.86 4.04
3358 4650 4.407296 AGTCCATTTTGTACCTTGGCAAAA 59.593 37.500 0.00 5.16 44.99 2.44
3397 4689 7.182089 GGAGTGCAAAGAAAATTGTGAAAAAG 58.818 34.615 0.00 0.00 32.80 2.27
3401 4693 4.097135 TCGGAGTGCAAAGAAAATTGTGAA 59.903 37.500 0.00 0.00 32.80 3.18
3482 4775 0.669318 TGGAGTCACGGAACAATCGC 60.669 55.000 0.00 0.00 0.00 4.58
3483 4776 2.010145 ATGGAGTCACGGAACAATCG 57.990 50.000 0.00 0.00 0.00 3.34
3484 4777 2.678336 GGAATGGAGTCACGGAACAATC 59.322 50.000 0.00 0.00 0.00 2.67
3485 4778 2.711542 GGAATGGAGTCACGGAACAAT 58.288 47.619 0.00 0.00 0.00 2.71
3486 4779 1.606994 CGGAATGGAGTCACGGAACAA 60.607 52.381 0.00 0.00 0.00 2.83
3487 4780 0.037697 CGGAATGGAGTCACGGAACA 60.038 55.000 0.00 0.00 0.00 3.18
3488 4781 0.037605 ACGGAATGGAGTCACGGAAC 60.038 55.000 0.00 0.00 0.00 3.62
3489 4782 0.037697 CACGGAATGGAGTCACGGAA 60.038 55.000 0.00 0.00 0.00 4.30
3490 4783 0.896479 TCACGGAATGGAGTCACGGA 60.896 55.000 0.00 0.00 0.00 4.69
3491 4784 0.736325 GTCACGGAATGGAGTCACGG 60.736 60.000 0.00 0.00 0.00 4.94
3492 4785 0.038618 TGTCACGGAATGGAGTCACG 60.039 55.000 0.00 0.00 0.00 4.35
3493 4786 2.163818 TTGTCACGGAATGGAGTCAC 57.836 50.000 0.00 0.00 0.00 3.67
3494 4787 4.753516 ATATTGTCACGGAATGGAGTCA 57.246 40.909 0.00 0.00 0.00 3.41
3495 4788 5.116180 TGAATATTGTCACGGAATGGAGTC 58.884 41.667 0.00 0.00 0.00 3.36
3496 4789 5.097742 TGAATATTGTCACGGAATGGAGT 57.902 39.130 0.00 0.00 0.00 3.85
3497 4790 6.435430 TTTGAATATTGTCACGGAATGGAG 57.565 37.500 0.00 0.00 0.00 3.86
3498 4791 6.825944 TTTTGAATATTGTCACGGAATGGA 57.174 33.333 0.00 0.00 0.00 3.41
3563 4856 9.906660 CTTGCCAAAACTTATGTAGTAAATTCA 57.093 29.630 0.00 0.00 35.54 2.57
3564 4857 9.353999 CCTTGCCAAAACTTATGTAGTAAATTC 57.646 33.333 0.00 0.00 35.54 2.17
3565 4858 7.817478 GCCTTGCCAAAACTTATGTAGTAAATT 59.183 33.333 0.00 0.00 35.54 1.82
3566 4859 7.039363 TGCCTTGCCAAAACTTATGTAGTAAAT 60.039 33.333 0.00 0.00 35.54 1.40
3567 4860 6.265649 TGCCTTGCCAAAACTTATGTAGTAAA 59.734 34.615 0.00 0.00 35.54 2.01
3568 4861 5.770663 TGCCTTGCCAAAACTTATGTAGTAA 59.229 36.000 0.00 0.00 35.54 2.24
3569 4862 5.317808 TGCCTTGCCAAAACTTATGTAGTA 58.682 37.500 0.00 0.00 35.54 1.82
3570 4863 4.148838 TGCCTTGCCAAAACTTATGTAGT 58.851 39.130 0.00 0.00 39.32 2.73
3571 4864 4.782019 TGCCTTGCCAAAACTTATGTAG 57.218 40.909 0.00 0.00 0.00 2.74
3572 4865 5.163703 CGTATGCCTTGCCAAAACTTATGTA 60.164 40.000 0.00 0.00 0.00 2.29
3573 4866 4.380444 CGTATGCCTTGCCAAAACTTATGT 60.380 41.667 0.00 0.00 0.00 2.29
3574 4867 4.104776 CGTATGCCTTGCCAAAACTTATG 58.895 43.478 0.00 0.00 0.00 1.90
3575 4868 3.761752 ACGTATGCCTTGCCAAAACTTAT 59.238 39.130 0.00 0.00 0.00 1.73
3576 4869 3.150767 ACGTATGCCTTGCCAAAACTTA 58.849 40.909 0.00 0.00 0.00 2.24
3577 4870 1.960689 ACGTATGCCTTGCCAAAACTT 59.039 42.857 0.00 0.00 0.00 2.66
3578 4871 1.616159 ACGTATGCCTTGCCAAAACT 58.384 45.000 0.00 0.00 0.00 2.66
3579 4872 3.775661 ATACGTATGCCTTGCCAAAAC 57.224 42.857 7.41 0.00 0.00 2.43
3580 4873 5.899120 TTTATACGTATGCCTTGCCAAAA 57.101 34.783 18.37 4.49 0.00 2.44
3581 4874 6.269315 CAATTTATACGTATGCCTTGCCAAA 58.731 36.000 18.37 8.15 0.00 3.28
3582 4875 5.734786 GCAATTTATACGTATGCCTTGCCAA 60.735 40.000 25.00 8.54 33.44 4.52
3583 4876 4.261405 GCAATTTATACGTATGCCTTGCCA 60.261 41.667 25.00 3.75 33.44 4.92
3584 4877 4.226761 GCAATTTATACGTATGCCTTGCC 58.773 43.478 25.00 15.10 33.44 4.52
3585 4878 4.854399 TGCAATTTATACGTATGCCTTGC 58.146 39.130 26.80 26.80 38.50 4.01
3586 4879 6.667370 TCATGCAATTTATACGTATGCCTTG 58.333 36.000 18.37 16.71 36.20 3.61
3587 4880 6.875948 TCATGCAATTTATACGTATGCCTT 57.124 33.333 18.37 5.55 36.20 4.35
3588 4881 6.183360 CGATCATGCAATTTATACGTATGCCT 60.183 38.462 18.37 4.32 36.20 4.75
3589 4882 5.959527 CGATCATGCAATTTATACGTATGCC 59.040 40.000 18.37 0.57 36.20 4.40
3590 4883 6.761117 TCGATCATGCAATTTATACGTATGC 58.239 36.000 18.37 14.07 37.52 3.14
3591 4884 9.759259 ATTTCGATCATGCAATTTATACGTATG 57.241 29.630 18.37 3.50 0.00 2.39
3624 4917 9.549078 TGGAACATACGCATGTAAATATTAAGA 57.451 29.630 0.71 0.00 44.83 2.10
3645 4938 6.726490 TCTACCACACTAAGGATATGGAAC 57.274 41.667 0.00 0.00 34.38 3.62
3646 4939 7.743116 TTTCTACCACACTAAGGATATGGAA 57.257 36.000 0.00 0.00 34.38 3.53
3647 4940 7.743116 TTTTCTACCACACTAAGGATATGGA 57.257 36.000 0.00 0.00 34.38 3.41
3648 4941 8.980481 ATTTTTCTACCACACTAAGGATATGG 57.020 34.615 0.00 0.00 36.46 2.74
3671 4964 9.783256 GCGGTCAAGAAAACAAAATACTATATT 57.217 29.630 0.00 0.00 0.00 1.28
3672 4965 8.403236 GGCGGTCAAGAAAACAAAATACTATAT 58.597 33.333 0.00 0.00 0.00 0.86
3673 4966 7.390996 TGGCGGTCAAGAAAACAAAATACTATA 59.609 33.333 0.00 0.00 0.00 1.31
3674 4967 6.207810 TGGCGGTCAAGAAAACAAAATACTAT 59.792 34.615 0.00 0.00 0.00 2.12
3675 4968 5.531659 TGGCGGTCAAGAAAACAAAATACTA 59.468 36.000 0.00 0.00 0.00 1.82
3676 4969 4.339814 TGGCGGTCAAGAAAACAAAATACT 59.660 37.500 0.00 0.00 0.00 2.12
3677 4970 4.612943 TGGCGGTCAAGAAAACAAAATAC 58.387 39.130 0.00 0.00 0.00 1.89
3678 4971 4.920640 TGGCGGTCAAGAAAACAAAATA 57.079 36.364 0.00 0.00 0.00 1.40
3679 4972 3.810310 TGGCGGTCAAGAAAACAAAAT 57.190 38.095 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.