Multiple sequence alignment - TraesCS5A01G474300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G474300 chr5A 100.000 3420 0 0 2217 5636 650270909 650274328 0.000000e+00 6316.0
1 TraesCS5A01G474300 chr5A 100.000 2051 0 0 1 2051 650268693 650270743 0.000000e+00 3788.0
2 TraesCS5A01G474300 chr5A 88.000 425 35 10 4693 5106 650283501 650283920 6.560000e-134 488.0
3 TraesCS5A01G474300 chr5A 80.965 373 26 25 5302 5636 650284046 650284411 2.610000e-63 254.0
4 TraesCS5A01G474300 chr5A 90.805 87 7 1 5231 5316 450750794 450750708 1.280000e-21 115.0
5 TraesCS5A01G474300 chr5A 100.000 31 0 0 5060 5090 650283910 650283940 2.190000e-04 58.4
6 TraesCS5A01G474300 chr5D 95.252 2717 88 14 2217 4915 522139441 522142134 0.000000e+00 4265.0
7 TraesCS5A01G474300 chr5D 97.704 784 18 0 1244 2027 522138600 522139383 0.000000e+00 1349.0
8 TraesCS5A01G474300 chr5D 89.286 196 12 3 917 1107 522137833 522138024 2.620000e-58 237.0
9 TraesCS5A01G474300 chr5D 81.695 295 24 16 543 835 522137435 522137701 9.510000e-53 219.0
10 TraesCS5A01G474300 chr5D 86.061 165 12 5 4927 5091 522142250 522142403 3.490000e-37 167.0
11 TraesCS5A01G474300 chr5D 95.349 43 2 0 5108 5150 522142488 522142530 1.010000e-07 69.4
12 TraesCS5A01G474300 chr5B 96.579 1491 45 5 2217 3703 658452005 658453493 0.000000e+00 2466.0
13 TraesCS5A01G474300 chr5B 91.209 1365 71 17 3672 5031 658453509 658454829 0.000000e+00 1810.0
14 TraesCS5A01G474300 chr5B 97.212 789 22 0 1234 2022 658451145 658451933 0.000000e+00 1336.0
15 TraesCS5A01G474300 chr5B 86.017 236 19 7 882 1111 658450404 658450631 2.030000e-59 241.0
16 TraesCS5A01G474300 chr5B 86.585 164 11 8 5459 5614 658454932 658455092 2.700000e-38 171.0
17 TraesCS5A01G474300 chr5B 91.919 99 3 3 304 397 658449699 658449797 3.540000e-27 134.0
18 TraesCS5A01G474300 chr5B 89.773 88 8 1 5233 5319 531189302 531189215 1.660000e-20 111.0
19 TraesCS5A01G474300 chr6D 92.083 240 11 6 1 235 165527564 165527328 1.170000e-86 331.0
20 TraesCS5A01G474300 chr6D 97.143 35 1 0 5153 5187 155602041 155602007 6.100000e-05 60.2
21 TraesCS5A01G474300 chr2B 85.762 302 26 11 1 294 787985078 787984786 2.550000e-78 303.0
22 TraesCS5A01G474300 chr6A 85.714 294 24 12 1 288 317808842 317808561 1.540000e-75 294.0
23 TraesCS5A01G474300 chr6A 85.000 60 7 2 471 529 83063076 83063134 6.100000e-05 60.2
24 TraesCS5A01G474300 chr3A 83.612 299 35 7 1 287 746406301 746406597 9.310000e-68 268.0
25 TraesCS5A01G474300 chr3A 80.899 89 15 2 442 529 509859039 509859126 1.010000e-07 69.4
26 TraesCS5A01G474300 chr4B 82.667 300 38 7 1 288 31175925 31175628 2.610000e-63 254.0
27 TraesCS5A01G474300 chr1D 82.877 292 36 10 1 285 415640626 415640342 3.370000e-62 250.0
28 TraesCS5A01G474300 chr1D 100.000 28 0 0 5153 5180 33801827 33801854 1.000000e-02 52.8
29 TraesCS5A01G474300 chr7B 88.182 110 12 1 3753 3861 685247155 685247264 4.580000e-26 130.0
30 TraesCS5A01G474300 chr7A 88.679 106 12 0 3750 3855 581374353 581374248 4.580000e-26 130.0
31 TraesCS5A01G474300 chr7A 100.000 28 0 0 492 519 709964391 709964364 1.000000e-02 52.8
32 TraesCS5A01G474300 chr6B 92.045 88 6 1 5233 5319 646750143 646750056 7.670000e-24 122.0
33 TraesCS5A01G474300 chr6B 86.139 101 11 3 5231 5329 519397684 519397585 7.720000e-19 106.0
34 TraesCS5A01G474300 chr3B 88.776 98 11 0 3757 3854 752373331 752373428 2.760000e-23 121.0
35 TraesCS5A01G474300 chr4A 91.765 85 6 1 5233 5316 664446277 664446193 3.570000e-22 117.0
36 TraesCS5A01G474300 chr7D 89.362 94 7 3 5225 5316 610532165 610532073 1.280000e-21 115.0
37 TraesCS5A01G474300 chr7D 91.358 81 7 0 3758 3838 261818684 261818604 1.660000e-20 111.0
38 TraesCS5A01G474300 chr3D 82.946 129 19 3 3748 3875 305448556 305448682 4.610000e-21 113.0
39 TraesCS5A01G474300 chr3D 88.298 94 11 0 3758 3851 448432970 448432877 4.610000e-21 113.0
40 TraesCS5A01G474300 chr3D 87.755 98 11 1 3757 3854 590122379 590122283 4.610000e-21 113.0
41 TraesCS5A01G474300 chr4D 85.849 106 13 2 5218 5322 493742453 493742349 1.660000e-20 111.0
42 TraesCS5A01G474300 chr4D 88.889 90 8 2 5230 5317 18692706 18692617 5.970000e-20 110.0
43 TraesCS5A01G474300 chrUn 88.889 90 9 1 5231 5319 37403240 37403329 5.970000e-20 110.0
44 TraesCS5A01G474300 chr2A 97.059 34 1 0 5155 5188 748822532 748822499 2.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G474300 chr5A 650268693 650274328 5635 False 5052.000000 6316 100.000000 1 5636 2 chr5A.!!$F1 5635
1 TraesCS5A01G474300 chr5A 650283501 650284411 910 False 266.800000 488 89.655000 4693 5636 3 chr5A.!!$F2 943
2 TraesCS5A01G474300 chr5D 522137435 522142530 5095 False 1051.066667 4265 90.891167 543 5150 6 chr5D.!!$F1 4607
3 TraesCS5A01G474300 chr5B 658449699 658455092 5393 False 1026.333333 2466 91.586833 304 5614 6 chr5B.!!$F1 5310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.038166 AAAGGCGCTCTTCCATCCAA 59.962 50.0 7.64 0.0 33.94 3.53 F
273 274 0.098025 CGTTGCAACACACGGTCTTT 59.902 50.0 28.01 0.0 0.00 2.52 F
979 1200 0.336048 CCCAGTCCACATTCCCCATT 59.664 55.0 0.00 0.0 0.00 3.16 F
2042 2711 0.682292 TCTTGTGCACGGGTACATCA 59.318 50.0 10.09 0.0 39.44 3.07 F
2409 3090 0.532115 GCCCCAAAATTGCGAGTGAT 59.468 50.0 0.00 0.0 0.00 3.06 F
3910 4641 0.173708 CAAGTCACGGAGGGAGTAGC 59.826 60.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1286 0.809385 CGAAGTCGAGGTAGAAGGCA 59.191 55.000 0.00 0.00 43.02 4.75 R
1878 2538 1.372087 CTGCAGCGTCCCCTTTGATC 61.372 60.000 0.00 0.00 0.00 2.92 R
2375 3055 1.203038 TGGGGCAAAGCAGATGAGAAA 60.203 47.619 0.00 0.00 0.00 2.52 R
3424 4107 1.691976 TCTGGACAACCGTTCTCACAT 59.308 47.619 0.00 0.00 39.42 3.21 R
4383 5118 1.068748 GCGACTTTGACCTCGTAGTCA 60.069 52.381 6.24 6.24 44.89 3.41 R
5105 6058 0.106967 TGCATAACCGGCTGCCATAA 60.107 50.000 20.29 0.65 37.59 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.302285 ATCCTGCTCTTGCCAGTGG 59.698 57.895 4.20 4.20 38.71 4.00
19 20 2.207501 ATCCTGCTCTTGCCAGTGGG 62.208 60.000 12.15 0.00 38.71 4.61
20 21 2.752358 CTGCTCTTGCCAGTGGGA 59.248 61.111 12.15 4.88 38.71 4.37
21 22 1.302285 CTGCTCTTGCCAGTGGGAT 59.698 57.895 12.15 0.00 38.71 3.85
22 23 0.543277 CTGCTCTTGCCAGTGGGATA 59.457 55.000 12.15 0.00 38.71 2.59
23 24 0.253044 TGCTCTTGCCAGTGGGATAC 59.747 55.000 12.15 0.00 38.71 2.24
24 25 0.811616 GCTCTTGCCAGTGGGATACG 60.812 60.000 12.15 0.00 35.59 3.06
25 26 0.824109 CTCTTGCCAGTGGGATACGA 59.176 55.000 12.15 4.58 35.59 3.43
26 27 1.207089 CTCTTGCCAGTGGGATACGAA 59.793 52.381 12.15 0.00 35.59 3.85
27 28 1.626321 TCTTGCCAGTGGGATACGAAA 59.374 47.619 12.15 0.00 35.59 3.46
28 29 2.009774 CTTGCCAGTGGGATACGAAAG 58.990 52.381 12.15 0.00 35.59 2.62
29 30 0.251916 TGCCAGTGGGATACGAAAGG 59.748 55.000 12.15 0.00 35.59 3.11
30 31 1.095807 GCCAGTGGGATACGAAAGGC 61.096 60.000 12.15 0.00 35.59 4.35
31 32 0.810031 CCAGTGGGATACGAAAGGCG 60.810 60.000 0.00 0.00 40.99 5.52
32 33 1.153429 AGTGGGATACGAAAGGCGC 60.153 57.895 0.00 0.00 46.04 6.53
33 34 1.153429 GTGGGATACGAAAGGCGCT 60.153 57.895 7.64 0.00 46.04 5.92
34 35 1.143183 TGGGATACGAAAGGCGCTC 59.857 57.895 7.64 0.00 46.04 5.03
35 36 1.327690 TGGGATACGAAAGGCGCTCT 61.328 55.000 7.64 0.00 46.04 4.09
36 37 0.179081 GGGATACGAAAGGCGCTCTT 60.179 55.000 7.64 6.31 46.04 2.85
37 38 1.209998 GGATACGAAAGGCGCTCTTC 58.790 55.000 7.64 9.62 46.04 2.87
38 39 1.209998 GATACGAAAGGCGCTCTTCC 58.790 55.000 7.64 0.00 46.04 3.46
39 40 0.535335 ATACGAAAGGCGCTCTTCCA 59.465 50.000 7.64 0.74 46.04 3.53
40 41 0.535335 TACGAAAGGCGCTCTTCCAT 59.465 50.000 7.64 3.35 46.04 3.41
41 42 0.741221 ACGAAAGGCGCTCTTCCATC 60.741 55.000 7.64 3.31 46.04 3.51
42 43 1.432270 CGAAAGGCGCTCTTCCATCC 61.432 60.000 7.64 0.00 33.94 3.51
43 44 0.392998 GAAAGGCGCTCTTCCATCCA 60.393 55.000 7.64 0.00 33.94 3.41
44 45 0.038166 AAAGGCGCTCTTCCATCCAA 59.962 50.000 7.64 0.00 33.94 3.53
45 46 0.257039 AAGGCGCTCTTCCATCCAAT 59.743 50.000 7.64 0.00 0.00 3.16
46 47 0.257039 AGGCGCTCTTCCATCCAATT 59.743 50.000 7.64 0.00 0.00 2.32
47 48 0.665298 GGCGCTCTTCCATCCAATTC 59.335 55.000 7.64 0.00 0.00 2.17
48 49 0.665298 GCGCTCTTCCATCCAATTCC 59.335 55.000 0.00 0.00 0.00 3.01
49 50 1.748591 GCGCTCTTCCATCCAATTCCT 60.749 52.381 0.00 0.00 0.00 3.36
50 51 2.216898 CGCTCTTCCATCCAATTCCTC 58.783 52.381 0.00 0.00 0.00 3.71
51 52 2.216898 GCTCTTCCATCCAATTCCTCG 58.783 52.381 0.00 0.00 0.00 4.63
52 53 2.158900 GCTCTTCCATCCAATTCCTCGA 60.159 50.000 0.00 0.00 0.00 4.04
53 54 3.462021 CTCTTCCATCCAATTCCTCGAC 58.538 50.000 0.00 0.00 0.00 4.20
54 55 2.170607 TCTTCCATCCAATTCCTCGACC 59.829 50.000 0.00 0.00 0.00 4.79
55 56 0.837272 TCCATCCAATTCCTCGACCC 59.163 55.000 0.00 0.00 0.00 4.46
56 57 0.532862 CCATCCAATTCCTCGACCCG 60.533 60.000 0.00 0.00 0.00 5.28
57 58 0.532862 CATCCAATTCCTCGACCCGG 60.533 60.000 0.00 0.00 0.00 5.73
58 59 0.981277 ATCCAATTCCTCGACCCGGT 60.981 55.000 0.00 0.00 0.00 5.28
59 60 1.153429 CCAATTCCTCGACCCGGTC 60.153 63.158 7.59 7.59 0.00 4.79
60 61 1.594833 CAATTCCTCGACCCGGTCA 59.405 57.895 17.87 4.20 32.09 4.02
61 62 0.178068 CAATTCCTCGACCCGGTCAT 59.822 55.000 17.87 0.00 32.09 3.06
62 63 0.464452 AATTCCTCGACCCGGTCATC 59.536 55.000 17.87 0.00 32.09 2.92
63 64 1.400530 ATTCCTCGACCCGGTCATCC 61.401 60.000 17.87 0.00 32.09 3.51
64 65 3.537874 CCTCGACCCGGTCATCCC 61.538 72.222 17.87 0.00 32.09 3.85
65 66 2.758327 CTCGACCCGGTCATCCCA 60.758 66.667 17.87 0.00 32.09 4.37
66 67 2.284039 TCGACCCGGTCATCCCAA 60.284 61.111 17.87 0.00 32.09 4.12
67 68 2.186903 CGACCCGGTCATCCCAAG 59.813 66.667 17.87 0.00 32.09 3.61
68 69 2.656069 CGACCCGGTCATCCCAAGT 61.656 63.158 17.87 0.00 32.09 3.16
69 70 1.324740 CGACCCGGTCATCCCAAGTA 61.325 60.000 17.87 0.00 32.09 2.24
70 71 0.177373 GACCCGGTCATCCCAAGTAC 59.823 60.000 13.05 0.00 32.09 2.73
71 72 0.545787 ACCCGGTCATCCCAAGTACA 60.546 55.000 0.00 0.00 0.00 2.90
72 73 0.837272 CCCGGTCATCCCAAGTACAT 59.163 55.000 0.00 0.00 0.00 2.29
73 74 1.211949 CCCGGTCATCCCAAGTACATT 59.788 52.381 0.00 0.00 0.00 2.71
74 75 2.288666 CCGGTCATCCCAAGTACATTG 58.711 52.381 0.00 0.00 38.74 2.82
75 76 2.355716 CCGGTCATCCCAAGTACATTGT 60.356 50.000 0.00 0.00 37.17 2.71
76 77 2.677836 CGGTCATCCCAAGTACATTGTG 59.322 50.000 0.00 0.00 37.17 3.33
77 78 3.618752 CGGTCATCCCAAGTACATTGTGA 60.619 47.826 0.00 0.00 37.17 3.58
78 79 4.331968 GGTCATCCCAAGTACATTGTGAA 58.668 43.478 0.00 0.00 37.17 3.18
79 80 4.949856 GGTCATCCCAAGTACATTGTGAAT 59.050 41.667 0.00 0.00 37.17 2.57
80 81 5.163622 GGTCATCCCAAGTACATTGTGAATG 60.164 44.000 0.00 0.00 44.48 2.67
81 82 4.949238 TCATCCCAAGTACATTGTGAATGG 59.051 41.667 0.00 4.79 43.21 3.16
82 83 4.380843 TCCCAAGTACATTGTGAATGGT 57.619 40.909 0.00 0.00 43.21 3.55
83 84 4.078537 TCCCAAGTACATTGTGAATGGTG 58.921 43.478 0.00 0.63 43.21 4.17
84 85 3.367292 CCCAAGTACATTGTGAATGGTGC 60.367 47.826 0.00 0.00 43.21 5.01
85 86 3.507233 CCAAGTACATTGTGAATGGTGCT 59.493 43.478 0.00 0.00 43.21 4.40
86 87 4.022068 CCAAGTACATTGTGAATGGTGCTT 60.022 41.667 0.00 0.00 43.21 3.91
87 88 4.771590 AGTACATTGTGAATGGTGCTTG 57.228 40.909 0.00 0.00 43.21 4.01
88 89 4.397420 AGTACATTGTGAATGGTGCTTGA 58.603 39.130 0.00 0.00 43.21 3.02
89 90 5.012239 AGTACATTGTGAATGGTGCTTGAT 58.988 37.500 0.00 0.00 43.21 2.57
90 91 4.877378 ACATTGTGAATGGTGCTTGATT 57.123 36.364 0.00 0.00 43.21 2.57
91 92 4.562082 ACATTGTGAATGGTGCTTGATTG 58.438 39.130 0.00 0.00 43.21 2.67
92 93 4.039488 ACATTGTGAATGGTGCTTGATTGT 59.961 37.500 0.00 0.00 43.21 2.71
93 94 5.243507 ACATTGTGAATGGTGCTTGATTGTA 59.756 36.000 0.00 0.00 43.21 2.41
94 95 5.375417 TTGTGAATGGTGCTTGATTGTAG 57.625 39.130 0.00 0.00 0.00 2.74
95 96 3.191162 TGTGAATGGTGCTTGATTGTAGC 59.809 43.478 0.00 0.00 39.10 3.58
96 97 2.419673 TGAATGGTGCTTGATTGTAGCG 59.580 45.455 0.00 0.00 41.54 4.26
97 98 2.401583 ATGGTGCTTGATTGTAGCGA 57.598 45.000 0.00 0.00 41.54 4.93
98 99 2.177394 TGGTGCTTGATTGTAGCGAA 57.823 45.000 0.00 0.00 41.54 4.70
99 100 2.076100 TGGTGCTTGATTGTAGCGAAG 58.924 47.619 0.00 0.00 41.54 3.79
117 118 4.957971 CGAAGCGTCACTGAATAAAATGT 58.042 39.130 0.00 0.00 0.00 2.71
118 119 6.089920 CGAAGCGTCACTGAATAAAATGTA 57.910 37.500 0.00 0.00 0.00 2.29
119 120 6.705782 CGAAGCGTCACTGAATAAAATGTAT 58.294 36.000 0.00 0.00 0.00 2.29
120 121 7.180079 CGAAGCGTCACTGAATAAAATGTATT 58.820 34.615 0.00 0.00 0.00 1.89
121 122 7.692291 CGAAGCGTCACTGAATAAAATGTATTT 59.308 33.333 0.00 0.00 0.00 1.40
122 123 9.982291 GAAGCGTCACTGAATAAAATGTATTTA 57.018 29.630 0.00 0.00 0.00 1.40
123 124 9.769093 AAGCGTCACTGAATAAAATGTATTTAC 57.231 29.630 0.00 0.00 0.00 2.01
124 125 8.114290 AGCGTCACTGAATAAAATGTATTTACG 58.886 33.333 0.00 0.00 0.00 3.18
125 126 8.111836 GCGTCACTGAATAAAATGTATTTACGA 58.888 33.333 0.00 0.00 0.00 3.43
126 127 9.619727 CGTCACTGAATAAAATGTATTTACGAG 57.380 33.333 0.00 0.00 0.00 4.18
176 177 7.872113 AGAGTTGGGATGTATTCAATTTCTC 57.128 36.000 0.00 0.00 0.00 2.87
177 178 6.540189 AGAGTTGGGATGTATTCAATTTCTCG 59.460 38.462 0.00 0.00 0.00 4.04
178 179 6.180472 AGTTGGGATGTATTCAATTTCTCGT 58.820 36.000 0.00 0.00 0.00 4.18
179 180 6.094048 AGTTGGGATGTATTCAATTTCTCGTG 59.906 38.462 0.00 0.00 0.00 4.35
180 181 5.496556 TGGGATGTATTCAATTTCTCGTGT 58.503 37.500 0.00 0.00 0.00 4.49
181 182 5.584649 TGGGATGTATTCAATTTCTCGTGTC 59.415 40.000 0.00 0.00 0.00 3.67
182 183 5.817816 GGGATGTATTCAATTTCTCGTGTCT 59.182 40.000 0.00 0.00 0.00 3.41
183 184 6.238211 GGGATGTATTCAATTTCTCGTGTCTG 60.238 42.308 0.00 0.00 0.00 3.51
184 185 6.535150 GGATGTATTCAATTTCTCGTGTCTGA 59.465 38.462 0.00 0.00 0.00 3.27
185 186 6.706055 TGTATTCAATTTCTCGTGTCTGAC 57.294 37.500 0.00 0.00 0.00 3.51
186 187 6.220201 TGTATTCAATTTCTCGTGTCTGACA 58.780 36.000 6.36 6.36 0.00 3.58
187 188 6.704050 TGTATTCAATTTCTCGTGTCTGACAA 59.296 34.615 12.81 0.00 0.00 3.18
188 189 5.657470 TTCAATTTCTCGTGTCTGACAAG 57.343 39.130 12.81 14.69 0.00 3.16
189 190 4.693283 TCAATTTCTCGTGTCTGACAAGT 58.307 39.130 20.31 1.46 0.00 3.16
190 191 4.507756 TCAATTTCTCGTGTCTGACAAGTG 59.492 41.667 20.31 18.17 0.00 3.16
191 192 3.793797 TTTCTCGTGTCTGACAAGTGA 57.206 42.857 20.31 19.86 30.63 3.41
192 193 3.793797 TTCTCGTGTCTGACAAGTGAA 57.206 42.857 25.95 25.95 37.60 3.18
193 194 3.793797 TCTCGTGTCTGACAAGTGAAA 57.206 42.857 20.54 4.81 29.86 2.69
194 195 3.706698 TCTCGTGTCTGACAAGTGAAAG 58.293 45.455 20.54 12.67 29.86 2.62
195 196 3.380320 TCTCGTGTCTGACAAGTGAAAGA 59.620 43.478 20.54 14.35 29.86 2.52
196 197 4.038042 TCTCGTGTCTGACAAGTGAAAGAT 59.962 41.667 20.54 0.00 29.86 2.40
197 198 4.299155 TCGTGTCTGACAAGTGAAAGATC 58.701 43.478 20.31 1.43 0.00 2.75
198 199 4.038042 TCGTGTCTGACAAGTGAAAGATCT 59.962 41.667 20.31 0.00 0.00 2.75
199 200 4.747108 CGTGTCTGACAAGTGAAAGATCTT 59.253 41.667 12.81 0.88 0.00 2.40
200 201 5.920840 CGTGTCTGACAAGTGAAAGATCTTA 59.079 40.000 12.81 0.00 0.00 2.10
201 202 6.088749 CGTGTCTGACAAGTGAAAGATCTTAG 59.911 42.308 12.81 0.00 0.00 2.18
202 203 6.926272 GTGTCTGACAAGTGAAAGATCTTAGT 59.074 38.462 12.81 0.00 0.00 2.24
203 204 7.439655 GTGTCTGACAAGTGAAAGATCTTAGTT 59.560 37.037 12.81 0.25 0.00 2.24
204 205 7.439356 TGTCTGACAAGTGAAAGATCTTAGTTG 59.561 37.037 18.30 18.30 0.00 3.16
205 206 6.931281 TCTGACAAGTGAAAGATCTTAGTTGG 59.069 38.462 21.66 10.33 0.00 3.77
206 207 6.591935 TGACAAGTGAAAGATCTTAGTTGGT 58.408 36.000 21.66 12.11 0.00 3.67
207 208 6.483307 TGACAAGTGAAAGATCTTAGTTGGTG 59.517 38.462 21.66 13.53 0.00 4.17
208 209 5.239525 ACAAGTGAAAGATCTTAGTTGGTGC 59.760 40.000 21.66 5.26 0.00 5.01
209 210 5.234466 AGTGAAAGATCTTAGTTGGTGCT 57.766 39.130 8.75 0.00 0.00 4.40
210 211 5.625150 AGTGAAAGATCTTAGTTGGTGCTT 58.375 37.500 8.75 0.00 0.00 3.91
211 212 6.064717 AGTGAAAGATCTTAGTTGGTGCTTT 58.935 36.000 8.75 0.00 0.00 3.51
212 213 7.224297 AGTGAAAGATCTTAGTTGGTGCTTTA 58.776 34.615 8.75 0.00 0.00 1.85
213 214 7.719633 AGTGAAAGATCTTAGTTGGTGCTTTAA 59.280 33.333 8.75 0.00 0.00 1.52
214 215 8.017946 GTGAAAGATCTTAGTTGGTGCTTTAAG 58.982 37.037 8.75 0.00 0.00 1.85
215 216 6.502136 AAGATCTTAGTTGGTGCTTTAAGC 57.498 37.500 10.38 10.38 42.82 3.09
216 217 5.810095 AGATCTTAGTTGGTGCTTTAAGCT 58.190 37.500 18.20 0.00 42.97 3.74
217 218 6.241645 AGATCTTAGTTGGTGCTTTAAGCTT 58.758 36.000 18.20 3.48 42.97 3.74
218 219 6.717084 AGATCTTAGTTGGTGCTTTAAGCTTT 59.283 34.615 18.20 0.52 42.97 3.51
219 220 6.709018 TCTTAGTTGGTGCTTTAAGCTTTT 57.291 33.333 18.20 1.17 42.97 2.27
220 221 6.735130 TCTTAGTTGGTGCTTTAAGCTTTTC 58.265 36.000 18.20 6.08 42.97 2.29
221 222 6.320164 TCTTAGTTGGTGCTTTAAGCTTTTCA 59.680 34.615 18.20 8.00 42.97 2.69
222 223 5.535753 AGTTGGTGCTTTAAGCTTTTCAT 57.464 34.783 18.20 0.00 42.97 2.57
223 224 5.917462 AGTTGGTGCTTTAAGCTTTTCATT 58.083 33.333 18.20 0.00 42.97 2.57
224 225 5.754890 AGTTGGTGCTTTAAGCTTTTCATTG 59.245 36.000 18.20 0.00 42.97 2.82
225 226 5.528043 TGGTGCTTTAAGCTTTTCATTGA 57.472 34.783 18.20 0.00 42.97 2.57
226 227 5.288804 TGGTGCTTTAAGCTTTTCATTGAC 58.711 37.500 18.20 4.30 42.97 3.18
227 228 5.163468 TGGTGCTTTAAGCTTTTCATTGACA 60.163 36.000 18.20 0.00 42.97 3.58
228 229 5.752955 GGTGCTTTAAGCTTTTCATTGACAA 59.247 36.000 18.20 0.00 42.97 3.18
229 230 6.074142 GGTGCTTTAAGCTTTTCATTGACAAG 60.074 38.462 18.20 7.98 42.97 3.16
230 231 5.463061 TGCTTTAAGCTTTTCATTGACAAGC 59.537 36.000 23.70 23.70 43.22 4.01
231 232 5.463061 GCTTTAAGCTTTTCATTGACAAGCA 59.537 36.000 29.45 14.24 44.69 3.91
232 233 6.018832 GCTTTAAGCTTTTCATTGACAAGCAA 60.019 34.615 29.45 18.14 44.69 3.91
233 234 7.467557 TTTAAGCTTTTCATTGACAAGCAAG 57.532 32.000 29.45 10.68 44.69 4.01
234 235 4.660789 AGCTTTTCATTGACAAGCAAGT 57.339 36.364 29.45 13.67 44.69 3.16
235 236 5.772825 AGCTTTTCATTGACAAGCAAGTA 57.227 34.783 29.45 0.00 44.69 2.24
236 237 5.523369 AGCTTTTCATTGACAAGCAAGTAC 58.477 37.500 29.45 8.31 44.69 2.73
237 238 5.067674 AGCTTTTCATTGACAAGCAAGTACA 59.932 36.000 29.45 0.00 44.69 2.90
238 239 5.922544 GCTTTTCATTGACAAGCAAGTACAT 59.077 36.000 25.34 0.00 42.66 2.29
239 240 6.088616 GCTTTTCATTGACAAGCAAGTACATC 59.911 38.462 25.34 0.61 42.66 3.06
240 241 6.631971 TTTCATTGACAAGCAAGTACATCA 57.368 33.333 0.00 0.00 40.42 3.07
241 242 6.631971 TTCATTGACAAGCAAGTACATCAA 57.368 33.333 0.00 0.00 40.42 2.57
242 243 6.822667 TCATTGACAAGCAAGTACATCAAT 57.177 33.333 0.00 0.00 40.42 2.57
243 244 7.920160 TCATTGACAAGCAAGTACATCAATA 57.080 32.000 0.00 0.00 40.42 1.90
244 245 8.334263 TCATTGACAAGCAAGTACATCAATAA 57.666 30.769 0.00 0.00 40.42 1.40
245 246 8.959548 TCATTGACAAGCAAGTACATCAATAAT 58.040 29.630 0.00 0.00 40.42 1.28
246 247 9.577110 CATTGACAAGCAAGTACATCAATAATT 57.423 29.630 0.00 0.00 40.42 1.40
248 249 9.979578 TTGACAAGCAAGTACATCAATAATTTT 57.020 25.926 0.00 0.00 31.55 1.82
249 250 9.979578 TGACAAGCAAGTACATCAATAATTTTT 57.020 25.926 0.00 0.00 0.00 1.94
266 267 1.997669 TTTTTCCCGTTGCAACACAC 58.002 45.000 28.01 3.05 0.00 3.82
267 268 0.179161 TTTTCCCGTTGCAACACACG 60.179 50.000 28.01 15.55 0.00 4.49
268 269 1.994507 TTTCCCGTTGCAACACACGG 61.995 55.000 28.01 23.21 40.47 4.94
269 270 3.206246 CCCGTTGCAACACACGGT 61.206 61.111 28.01 0.00 39.70 4.83
270 271 2.326550 CCGTTGCAACACACGGTC 59.673 61.111 28.01 0.00 37.83 4.79
271 272 2.177580 CCGTTGCAACACACGGTCT 61.178 57.895 28.01 0.00 37.83 3.85
272 273 1.711060 CCGTTGCAACACACGGTCTT 61.711 55.000 28.01 0.00 37.83 3.01
273 274 0.098025 CGTTGCAACACACGGTCTTT 59.902 50.000 28.01 0.00 0.00 2.52
274 275 1.466697 CGTTGCAACACACGGTCTTTT 60.467 47.619 28.01 0.00 0.00 2.27
275 276 2.601804 GTTGCAACACACGGTCTTTTT 58.398 42.857 24.52 0.00 0.00 1.94
276 277 2.270275 TGCAACACACGGTCTTTTTG 57.730 45.000 0.00 0.00 0.00 2.44
277 278 0.920664 GCAACACACGGTCTTTTTGC 59.079 50.000 0.00 0.00 33.23 3.68
278 279 1.469079 GCAACACACGGTCTTTTTGCT 60.469 47.619 0.00 0.00 37.08 3.91
279 280 2.223386 GCAACACACGGTCTTTTTGCTA 60.223 45.455 0.00 0.00 37.08 3.49
280 281 3.617669 CAACACACGGTCTTTTTGCTAG 58.382 45.455 0.00 0.00 0.00 3.42
281 282 2.914059 ACACACGGTCTTTTTGCTAGT 58.086 42.857 0.00 0.00 0.00 2.57
282 283 4.062677 ACACACGGTCTTTTTGCTAGTA 57.937 40.909 0.00 0.00 0.00 1.82
283 284 4.638304 ACACACGGTCTTTTTGCTAGTAT 58.362 39.130 0.00 0.00 0.00 2.12
284 285 5.786311 ACACACGGTCTTTTTGCTAGTATA 58.214 37.500 0.00 0.00 0.00 1.47
285 286 6.403878 ACACACGGTCTTTTTGCTAGTATAT 58.596 36.000 0.00 0.00 0.00 0.86
286 287 7.549839 ACACACGGTCTTTTTGCTAGTATATA 58.450 34.615 0.00 0.00 0.00 0.86
287 288 8.202137 ACACACGGTCTTTTTGCTAGTATATAT 58.798 33.333 0.00 0.00 0.00 0.86
288 289 9.042008 CACACGGTCTTTTTGCTAGTATATATT 57.958 33.333 0.00 0.00 0.00 1.28
289 290 9.257651 ACACGGTCTTTTTGCTAGTATATATTC 57.742 33.333 0.00 0.00 0.00 1.75
290 291 9.256477 CACGGTCTTTTTGCTAGTATATATTCA 57.744 33.333 0.00 0.00 0.00 2.57
291 292 9.826574 ACGGTCTTTTTGCTAGTATATATTCAA 57.173 29.630 0.00 0.00 0.00 2.69
300 301 9.713713 TTGCTAGTATATATTCAAATTACGGCA 57.286 29.630 0.00 0.00 0.00 5.69
301 302 9.713713 TGCTAGTATATATTCAAATTACGGCAA 57.286 29.630 0.00 0.00 0.00 4.52
302 303 9.968743 GCTAGTATATATTCAAATTACGGCAAC 57.031 33.333 0.00 0.00 0.00 4.17
335 336 5.937111 TCCCTTGCTTTAGTCTACAAAGTT 58.063 37.500 0.00 0.00 35.78 2.66
342 343 2.833631 AGTCTACAAAGTTCACCGGG 57.166 50.000 6.32 0.00 0.00 5.73
357 358 1.065418 ACCGGGTTCATCATCTTCCAC 60.065 52.381 6.32 0.00 0.00 4.02
401 523 7.801752 TGGTTTCAAATTCAAAACAAACTCAC 58.198 30.769 14.19 1.12 37.16 3.51
418 540 8.636213 ACAAACTCACTCATCATCATTTCTTTT 58.364 29.630 0.00 0.00 0.00 2.27
454 576 7.776030 ACTACTGATCATATAATACTCCCTCCG 59.224 40.741 0.00 0.00 0.00 4.63
466 588 0.909623 TCCCTCCGGACCTTTTCATC 59.090 55.000 0.00 0.00 31.13 2.92
479 601 5.308825 ACCTTTTCATCCCGCATATAAGAG 58.691 41.667 0.00 0.00 0.00 2.85
541 663 5.864830 TTCGCAAAAAGAAAGTTTGATCG 57.135 34.783 0.00 0.00 38.05 3.69
574 696 7.558161 TGGAAAAACATCAGCATCTATACTG 57.442 36.000 0.00 0.00 35.15 2.74
674 802 9.607988 TGATACTTCTTTTGTAAACTGACTTCA 57.392 29.630 0.00 0.00 0.00 3.02
677 805 8.561738 ACTTCTTTTGTAAACTGACTTCAGAA 57.438 30.769 13.27 0.00 46.59 3.02
690 818 9.846248 AACTGACTTCAGAAAAATGTTATATGC 57.154 29.630 13.27 0.00 46.59 3.14
691 819 8.177663 ACTGACTTCAGAAAAATGTTATATGCG 58.822 33.333 13.27 0.00 46.59 4.73
692 820 8.262715 TGACTTCAGAAAAATGTTATATGCGA 57.737 30.769 0.00 0.00 0.00 5.10
693 821 8.726068 TGACTTCAGAAAAATGTTATATGCGAA 58.274 29.630 0.00 0.00 0.00 4.70
695 823 8.730680 ACTTCAGAAAAATGTTATATGCGAAGT 58.269 29.630 0.00 0.00 34.83 3.01
709 839 2.289819 TGCGAAGTAAAAAGGACCCGAT 60.290 45.455 0.00 0.00 0.00 4.18
715 845 2.200373 AAAAAGGACCCGATGGAGTG 57.800 50.000 0.00 0.00 34.81 3.51
724 865 2.835764 ACCCGATGGAGTGCTAAAAGTA 59.164 45.455 0.00 0.00 34.81 2.24
725 866 3.454812 ACCCGATGGAGTGCTAAAAGTAT 59.545 43.478 0.00 0.00 34.81 2.12
726 867 4.080526 ACCCGATGGAGTGCTAAAAGTATT 60.081 41.667 0.00 0.00 34.81 1.89
727 868 4.511826 CCCGATGGAGTGCTAAAAGTATTC 59.488 45.833 0.00 0.00 0.00 1.75
728 869 5.360591 CCGATGGAGTGCTAAAAGTATTCT 58.639 41.667 0.00 0.00 0.00 2.40
729 870 6.462487 CCCGATGGAGTGCTAAAAGTATTCTA 60.462 42.308 0.00 0.00 0.00 2.10
730 871 6.642950 CCGATGGAGTGCTAAAAGTATTCTAG 59.357 42.308 0.00 0.00 0.00 2.43
731 872 6.144724 CGATGGAGTGCTAAAAGTATTCTAGC 59.855 42.308 0.00 0.00 38.82 3.42
732 873 6.294361 TGGAGTGCTAAAAGTATTCTAGCA 57.706 37.500 0.00 0.00 44.34 3.49
738 879 6.055588 TGCTAAAAGTATTCTAGCATCCACC 58.944 40.000 0.00 0.00 42.30 4.61
739 880 5.470437 GCTAAAAGTATTCTAGCATCCACCC 59.530 44.000 0.00 0.00 38.33 4.61
740 881 5.717119 AAAAGTATTCTAGCATCCACCCT 57.283 39.130 0.00 0.00 0.00 4.34
744 885 4.721776 AGTATTCTAGCATCCACCCTTTGA 59.278 41.667 0.00 0.00 0.00 2.69
761 902 6.165577 CCCTTTGATTTACAACCTGGAATTG 58.834 40.000 0.00 0.00 38.29 2.32
764 905 3.513515 TGATTTACAACCTGGAATTGCCC 59.486 43.478 0.00 0.00 34.97 5.36
766 907 2.917713 TACAACCTGGAATTGCCCAT 57.082 45.000 0.00 0.00 35.33 4.00
791 932 2.414559 GGCAAGTTGAACCATGATGTCG 60.415 50.000 7.16 0.00 0.00 4.35
811 952 6.851609 TGTCGTTAATCATTCCAATCAAAGG 58.148 36.000 0.00 0.00 0.00 3.11
816 957 3.824001 TCATTCCAATCAAAGGGACCA 57.176 42.857 0.00 0.00 31.59 4.02
835 982 2.126346 GCAAGTTGCACCGCATCC 60.126 61.111 22.90 0.00 44.26 3.51
836 983 2.568090 CAAGTTGCACCGCATCCC 59.432 61.111 0.00 0.00 38.76 3.85
837 984 2.676471 AAGTTGCACCGCATCCCC 60.676 61.111 0.00 0.00 38.76 4.81
838 985 4.740822 AGTTGCACCGCATCCCCC 62.741 66.667 0.00 0.00 38.76 5.40
880 1046 1.079543 CAACTCACGCAGGAGGAGG 60.080 63.158 6.57 0.00 39.27 4.30
881 1047 2.286523 AACTCACGCAGGAGGAGGG 61.287 63.158 6.57 0.00 39.27 4.30
885 1051 2.120718 ACGCAGGAGGAGGGACTT 59.879 61.111 0.00 0.00 41.55 3.01
887 1053 1.078848 CGCAGGAGGAGGGACTTTG 60.079 63.158 0.00 0.00 41.55 2.77
888 1054 1.301293 GCAGGAGGAGGGACTTTGG 59.699 63.158 0.00 0.00 41.55 3.28
901 1117 3.169956 TTTGGTCCGTTCCCCCGT 61.170 61.111 0.00 0.00 0.00 5.28
908 1124 3.060615 CGTTCCCCCGTCTCGACT 61.061 66.667 0.00 0.00 0.00 4.18
909 1125 2.883621 GTTCCCCCGTCTCGACTC 59.116 66.667 0.00 0.00 0.00 3.36
910 1126 1.678300 GTTCCCCCGTCTCGACTCT 60.678 63.158 0.00 0.00 0.00 3.24
911 1127 1.378250 TTCCCCCGTCTCGACTCTC 60.378 63.158 0.00 0.00 0.00 3.20
912 1128 3.203412 CCCCCGTCTCGACTCTCG 61.203 72.222 0.00 0.00 42.10 4.04
914 1130 2.462782 CCCCGTCTCGACTCTCGAC 61.463 68.421 0.00 0.00 44.82 4.20
915 1131 1.448189 CCCGTCTCGACTCTCGACT 60.448 63.158 0.99 0.00 44.82 4.18
923 1139 1.744811 CGACTCTCGACTCTCGACCG 61.745 65.000 0.00 0.00 44.82 4.79
924 1140 0.458197 GACTCTCGACTCTCGACCGA 60.458 60.000 0.00 0.00 44.82 4.69
968 1189 3.537506 TCCCCAGTCCCCAGTCCA 61.538 66.667 0.00 0.00 0.00 4.02
978 1199 1.583784 CCCCAGTCCACATTCCCCAT 61.584 60.000 0.00 0.00 0.00 4.00
979 1200 0.336048 CCCAGTCCACATTCCCCATT 59.664 55.000 0.00 0.00 0.00 3.16
989 1210 1.062488 ATTCCCCATTCCCCTCCGAG 61.062 60.000 0.00 0.00 0.00 4.63
990 1211 3.878667 CCCCATTCCCCTCCGAGC 61.879 72.222 0.00 0.00 0.00 5.03
991 1212 2.770048 CCCATTCCCCTCCGAGCT 60.770 66.667 0.00 0.00 0.00 4.09
992 1213 2.812619 CCCATTCCCCTCCGAGCTC 61.813 68.421 2.73 2.73 0.00 4.09
1124 1345 4.838486 CGCGCTCGTCACCCTCTC 62.838 72.222 5.56 0.00 0.00 3.20
1125 1346 4.500116 GCGCTCGTCACCCTCTCC 62.500 72.222 0.00 0.00 0.00 3.71
1126 1347 4.180946 CGCTCGTCACCCTCTCCG 62.181 72.222 0.00 0.00 0.00 4.63
1127 1348 4.500116 GCTCGTCACCCTCTCCGC 62.500 72.222 0.00 0.00 0.00 5.54
1128 1349 4.180946 CTCGTCACCCTCTCCGCG 62.181 72.222 0.00 0.00 0.00 6.46
1156 1377 2.680352 GGGACCTGCTCCTCGACA 60.680 66.667 0.00 0.00 39.39 4.35
1157 1378 2.574399 GGACCTGCTCCTCGACAC 59.426 66.667 0.00 0.00 35.89 3.67
1158 1379 2.179517 GACCTGCTCCTCGACACG 59.820 66.667 0.00 0.00 0.00 4.49
1159 1380 3.973267 GACCTGCTCCTCGACACGC 62.973 68.421 0.00 0.00 0.00 5.34
1223 1444 3.878667 CGCCCCCATCCCCTTCTC 61.879 72.222 0.00 0.00 0.00 2.87
1224 1445 3.502875 GCCCCCATCCCCTTCTCC 61.503 72.222 0.00 0.00 0.00 3.71
1225 1446 2.778717 CCCCCATCCCCTTCTCCC 60.779 72.222 0.00 0.00 0.00 4.30
1226 1447 2.378522 CCCCATCCCCTTCTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
1227 1448 1.772156 CCCCATCCCCTTCTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
1228 1449 2.143419 CCCATCCCCTTCTCCCTCG 61.143 68.421 0.00 0.00 0.00 4.63
1229 1450 2.812619 CCATCCCCTTCTCCCTCGC 61.813 68.421 0.00 0.00 0.00 5.03
1230 1451 2.446802 ATCCCCTTCTCCCTCGCC 60.447 66.667 0.00 0.00 0.00 5.54
1878 2538 4.308458 TTCCTCACGCCCACGGTG 62.308 66.667 0.00 0.00 46.04 4.94
1893 2553 1.299976 GGTGATCAAAGGGGACGCT 59.700 57.895 0.00 0.00 0.00 5.07
1926 2586 4.783621 GTGGCCCATGAGCTCGCA 62.784 66.667 9.64 0.00 0.00 5.10
1932 2592 1.226686 CCCATGAGCTCGCACATAGC 61.227 60.000 9.64 0.00 40.40 2.97
1989 2649 3.589288 AGGACTTCTGGCTAAATGAGGTT 59.411 43.478 0.00 0.00 0.00 3.50
2017 2677 2.221169 TGTCCTCATGTGTGCTTGTTC 58.779 47.619 0.00 0.00 0.00 3.18
2027 2696 7.140705 TCATGTGTGCTTGTTCTTTTATCTTG 58.859 34.615 0.00 0.00 0.00 3.02
2030 2699 5.173854 GTGTGCTTGTTCTTTTATCTTGTGC 59.826 40.000 0.00 0.00 0.00 4.57
2031 2700 5.163571 TGTGCTTGTTCTTTTATCTTGTGCA 60.164 36.000 0.00 0.00 0.00 4.57
2033 2702 4.379793 GCTTGTTCTTTTATCTTGTGCACG 59.620 41.667 13.13 0.00 0.00 5.34
2034 2703 4.481930 TGTTCTTTTATCTTGTGCACGG 57.518 40.909 13.13 7.83 0.00 4.94
2035 2704 3.252215 TGTTCTTTTATCTTGTGCACGGG 59.748 43.478 13.13 7.45 0.00 5.28
2037 2706 4.274602 TCTTTTATCTTGTGCACGGGTA 57.725 40.909 13.13 5.44 0.00 3.69
2038 2707 3.998341 TCTTTTATCTTGTGCACGGGTAC 59.002 43.478 13.13 0.00 0.00 3.34
2040 2709 3.620427 TTATCTTGTGCACGGGTACAT 57.380 42.857 10.09 0.00 39.44 2.29
2041 2710 2.024176 ATCTTGTGCACGGGTACATC 57.976 50.000 10.09 0.00 39.44 3.06
2042 2711 0.682292 TCTTGTGCACGGGTACATCA 59.318 50.000 10.09 0.00 39.44 3.07
2043 2712 1.277842 TCTTGTGCACGGGTACATCAT 59.722 47.619 10.09 0.00 39.44 2.45
2047 2716 2.080693 GTGCACGGGTACATCATGAAA 58.919 47.619 0.00 0.00 0.00 2.69
2049 2718 5.923939 TGTGCACGGGTACATCATGAAATG 61.924 45.833 13.13 0.00 39.19 2.32
2050 2719 2.033299 GCACGGGTACATCATGAAATGG 59.967 50.000 0.00 0.00 46.73 3.16
2375 3055 6.895756 TCAACCAGGACTCATTGTATAGTAGT 59.104 38.462 0.00 0.00 0.00 2.73
2379 3059 7.620094 ACCAGGACTCATTGTATAGTAGTTTCT 59.380 37.037 0.00 0.00 0.00 2.52
2391 3071 6.917217 ATAGTAGTTTCTCATCTGCTTTGC 57.083 37.500 0.00 0.00 0.00 3.68
2397 3077 1.203038 TCTCATCTGCTTTGCCCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
2398 3078 1.619827 CTCATCTGCTTTGCCCCAAAA 59.380 47.619 0.00 0.00 32.75 2.44
2402 3083 0.876399 CTGCTTTGCCCCAAAATTGC 59.124 50.000 0.00 0.00 32.75 3.56
2409 3090 0.532115 GCCCCAAAATTGCGAGTGAT 59.468 50.000 0.00 0.00 0.00 3.06
2410 3091 1.748493 GCCCCAAAATTGCGAGTGATA 59.252 47.619 0.00 0.00 0.00 2.15
2447 3128 7.642082 ACTAGAACTGTCACGGTAATATCTT 57.358 36.000 0.00 0.00 0.00 2.40
2714 3397 5.125417 CCAGGTGGGTATAACACAAGATTTG 59.875 44.000 10.07 0.00 40.54 2.32
2872 3555 3.295093 TGCCAACTTCAAGTTCCAATCA 58.705 40.909 0.00 0.00 36.03 2.57
3188 3871 8.420374 TTGATACTTCATCCAGTTTCGAATAC 57.580 34.615 0.00 0.36 32.09 1.89
3350 4033 8.049721 CCAGTTAGAATAGATTGTTCCTCCTTT 58.950 37.037 0.00 0.00 0.00 3.11
3356 4039 2.716424 AGATTGTTCCTCCTTTGGGACA 59.284 45.455 0.00 0.00 43.43 4.02
3424 4107 8.815565 TGCCAAATAAATAAGATAGTTGTCCA 57.184 30.769 0.00 0.00 28.99 4.02
3445 4128 1.691976 TGTGAGAACGGTTGTCCAGAT 59.308 47.619 14.55 0.00 0.00 2.90
3457 4140 2.703416 TGTCCAGATCAAGTCACATGC 58.297 47.619 0.00 0.00 0.00 4.06
3484 4167 9.444600 CTTTTGATTCATCAAGGGAAATCAAAT 57.555 29.630 17.73 0.00 46.34 2.32
3869 4600 7.011482 CGGAGGGAGTAATAGTTTCTCAATTTG 59.989 40.741 0.00 0.00 0.00 2.32
3910 4641 0.173708 CAAGTCACGGAGGGAGTAGC 59.826 60.000 0.00 0.00 0.00 3.58
4106 4841 6.435904 AGCAAGATGTAGAAAGTACTGAGACT 59.564 38.462 0.00 0.00 0.00 3.24
4140 4875 3.383825 TCAGGCTAGGGAATTCGTTACTC 59.616 47.826 0.00 0.00 0.00 2.59
4383 5118 0.179045 ACAAGCTGTCAGAAAGCCGT 60.179 50.000 9.19 4.23 41.82 5.68
4449 5184 2.162681 GGCTGCAGGTGTTACTTCAAT 58.837 47.619 17.12 0.00 0.00 2.57
4679 5414 2.223157 CGAGCCTGAAGTAGAGAGAACG 60.223 54.545 0.00 0.00 0.00 3.95
4680 5415 2.096248 AGCCTGAAGTAGAGAGAACGG 58.904 52.381 0.00 0.00 0.00 4.44
4684 5419 3.127895 CCTGAAGTAGAGAGAACGGTCTG 59.872 52.174 8.28 0.00 32.80 3.51
4755 5493 0.473694 TCCTGGAGCTGACCTTGGAA 60.474 55.000 0.00 0.00 33.32 3.53
4756 5494 0.401738 CCTGGAGCTGACCTTGGAAA 59.598 55.000 0.00 0.00 0.00 3.13
4757 5495 1.202927 CCTGGAGCTGACCTTGGAAAA 60.203 52.381 0.00 0.00 0.00 2.29
4780 5518 4.950205 AAACTCTGAACTTCCTTCGGTA 57.050 40.909 0.00 0.00 36.69 4.02
4785 5523 4.817517 TCTGAACTTCCTTCGGTAATGTC 58.182 43.478 0.00 0.00 36.69 3.06
4787 5525 4.817517 TGAACTTCCTTCGGTAATGTCTC 58.182 43.478 0.00 0.00 0.00 3.36
4806 5544 3.191181 CTCATGTGAGACTGCATGTGCA 61.191 50.000 7.54 7.54 46.08 4.57
4876 5614 5.957771 ACATTATCCTGTGGTGATACTGT 57.042 39.130 0.00 0.00 35.19 3.55
4915 5653 6.148811 TGGTCATCGTCTTTTAAGTCAAATCC 59.851 38.462 0.00 0.00 0.00 3.01
4918 5656 6.934645 TCATCGTCTTTTAAGTCAAATCCTGT 59.065 34.615 0.00 0.00 0.00 4.00
4919 5657 6.539649 TCGTCTTTTAAGTCAAATCCTGTG 57.460 37.500 0.00 0.00 0.00 3.66
4920 5658 5.468746 TCGTCTTTTAAGTCAAATCCTGTGG 59.531 40.000 0.00 0.00 0.00 4.17
4921 5659 5.238650 CGTCTTTTAAGTCAAATCCTGTGGT 59.761 40.000 0.00 0.00 0.00 4.16
4922 5660 6.438763 GTCTTTTAAGTCAAATCCTGTGGTG 58.561 40.000 0.00 0.00 0.00 4.17
4924 5662 7.004086 TCTTTTAAGTCAAATCCTGTGGTGAT 58.996 34.615 0.00 0.00 0.00 3.06
4933 5775 9.561069 GTCAAATCCTGTGGTGATAATATTAGT 57.439 33.333 1.02 0.00 0.00 2.24
4968 5810 3.018856 TGTGCTTTGCTATGGAATGAGG 58.981 45.455 0.00 0.00 0.00 3.86
4987 5829 5.273208 TGAGGGGAGGATATTATCAGTAGC 58.727 45.833 6.04 0.00 0.00 3.58
5013 5855 0.536006 AGCACCTGTGGTCTTCTTGC 60.536 55.000 0.00 0.00 36.44 4.01
5017 5859 0.535780 CCTGTGGTCTTCTTGCTGCA 60.536 55.000 0.00 0.00 0.00 4.41
5022 5864 1.134128 TGGTCTTCTTGCTGCAGTTCA 60.134 47.619 16.64 2.29 0.00 3.18
5046 5888 3.694058 CTGCCAGCTAGTGCCCCAG 62.694 68.421 0.00 0.00 40.80 4.45
5090 5976 2.496070 TGATTGAACACGAGGAGTAGGG 59.504 50.000 0.00 0.00 0.00 3.53
5092 5978 0.613853 TGAACACGAGGAGTAGGGGG 60.614 60.000 0.00 0.00 0.00 5.40
5093 5979 1.957765 GAACACGAGGAGTAGGGGGC 61.958 65.000 0.00 0.00 0.00 5.80
5097 5983 2.838693 GAGGAGTAGGGGGCGGTC 60.839 72.222 0.00 0.00 0.00 4.79
5100 5986 2.808206 GGAGTAGGGGGCGGTCATG 61.808 68.421 0.00 0.00 0.00 3.07
5103 6056 2.445845 TAGGGGGCGGTCATGGAG 60.446 66.667 0.00 0.00 0.00 3.86
5148 6101 2.037772 TGGTTTTTGTGTGCTGGTTTGT 59.962 40.909 0.00 0.00 0.00 2.83
5149 6102 3.258372 TGGTTTTTGTGTGCTGGTTTGTA 59.742 39.130 0.00 0.00 0.00 2.41
5150 6103 3.862845 GGTTTTTGTGTGCTGGTTTGTAG 59.137 43.478 0.00 0.00 0.00 2.74
5151 6104 2.861462 TTTGTGTGCTGGTTTGTAGC 57.139 45.000 0.00 0.00 41.49 3.58
5156 6109 3.322514 TGCTGGTTTGTAGCACCTC 57.677 52.632 0.00 0.00 45.52 3.85
5157 6110 0.764890 TGCTGGTTTGTAGCACCTCT 59.235 50.000 0.00 0.00 45.52 3.69
5158 6111 1.160137 GCTGGTTTGTAGCACCTCTG 58.840 55.000 0.00 0.00 40.81 3.35
5159 6112 1.543429 GCTGGTTTGTAGCACCTCTGT 60.543 52.381 0.00 0.00 40.81 3.41
5160 6113 2.851195 CTGGTTTGTAGCACCTCTGTT 58.149 47.619 0.00 0.00 35.07 3.16
5161 6114 3.214328 CTGGTTTGTAGCACCTCTGTTT 58.786 45.455 0.00 0.00 35.07 2.83
5162 6115 3.626930 TGGTTTGTAGCACCTCTGTTTT 58.373 40.909 0.00 0.00 35.07 2.43
5163 6116 4.020543 TGGTTTGTAGCACCTCTGTTTTT 58.979 39.130 0.00 0.00 35.07 1.94
5164 6117 5.194432 TGGTTTGTAGCACCTCTGTTTTTA 58.806 37.500 0.00 0.00 35.07 1.52
5165 6118 5.652891 TGGTTTGTAGCACCTCTGTTTTTAA 59.347 36.000 0.00 0.00 35.07 1.52
5166 6119 6.153000 TGGTTTGTAGCACCTCTGTTTTTAAA 59.847 34.615 0.00 0.00 35.07 1.52
5167 6120 7.147811 TGGTTTGTAGCACCTCTGTTTTTAAAT 60.148 33.333 0.00 0.00 35.07 1.40
5168 6121 8.354426 GGTTTGTAGCACCTCTGTTTTTAAATA 58.646 33.333 0.00 0.00 0.00 1.40
5169 6122 9.908152 GTTTGTAGCACCTCTGTTTTTAAATAT 57.092 29.630 0.00 0.00 0.00 1.28
5193 6146 8.907222 ATAAGATGTTTTGGCAATTCTGTTTT 57.093 26.923 0.00 0.00 0.00 2.43
5194 6147 7.628769 AAGATGTTTTGGCAATTCTGTTTTT 57.371 28.000 0.00 0.00 0.00 1.94
5195 6148 8.729805 AAGATGTTTTGGCAATTCTGTTTTTA 57.270 26.923 0.00 0.00 0.00 1.52
5196 6149 8.729805 AGATGTTTTGGCAATTCTGTTTTTAA 57.270 26.923 0.00 0.00 0.00 1.52
5197 6150 9.341078 AGATGTTTTGGCAATTCTGTTTTTAAT 57.659 25.926 0.00 0.00 0.00 1.40
5198 6151 9.949174 GATGTTTTGGCAATTCTGTTTTTAATT 57.051 25.926 0.00 0.00 0.00 1.40
5223 6176 9.585099 TTATATGATGTTTTGGCAATTCTGTTC 57.415 29.630 0.00 0.00 0.00 3.18
5224 6177 5.534207 TGATGTTTTGGCAATTCTGTTCT 57.466 34.783 0.00 0.00 0.00 3.01
5225 6178 5.916318 TGATGTTTTGGCAATTCTGTTCTT 58.084 33.333 0.00 0.00 0.00 2.52
5226 6179 7.048629 TGATGTTTTGGCAATTCTGTTCTTA 57.951 32.000 0.00 0.00 0.00 2.10
5227 6180 7.669427 TGATGTTTTGGCAATTCTGTTCTTAT 58.331 30.769 0.00 0.00 0.00 1.73
5228 6181 8.801299 TGATGTTTTGGCAATTCTGTTCTTATA 58.199 29.630 0.00 0.00 0.00 0.98
5229 6182 9.294030 GATGTTTTGGCAATTCTGTTCTTATAG 57.706 33.333 0.00 0.00 0.00 1.31
5230 6183 8.402798 TGTTTTGGCAATTCTGTTCTTATAGA 57.597 30.769 0.00 0.00 0.00 1.98
5231 6184 8.514594 TGTTTTGGCAATTCTGTTCTTATAGAG 58.485 33.333 0.00 0.00 0.00 2.43
5232 6185 8.515414 GTTTTGGCAATTCTGTTCTTATAGAGT 58.485 33.333 0.00 0.00 0.00 3.24
5233 6186 9.733556 TTTTGGCAATTCTGTTCTTATAGAGTA 57.266 29.630 0.00 0.00 0.00 2.59
5234 6187 8.718102 TTGGCAATTCTGTTCTTATAGAGTAC 57.282 34.615 0.00 0.00 0.00 2.73
5235 6188 8.079211 TGGCAATTCTGTTCTTATAGAGTACT 57.921 34.615 0.00 0.00 0.00 2.73
5236 6189 8.198109 TGGCAATTCTGTTCTTATAGAGTACTC 58.802 37.037 15.41 15.41 0.00 2.59
5237 6190 8.417884 GGCAATTCTGTTCTTATAGAGTACTCT 58.582 37.037 27.72 27.72 43.40 3.24
5238 6191 9.458374 GCAATTCTGTTCTTATAGAGTACTCTC 57.542 37.037 28.42 12.96 40.93 3.20
5242 6195 9.607988 TTCTGTTCTTATAGAGTACTCTCTCTG 57.392 37.037 28.42 16.75 46.84 3.35
5243 6196 8.764558 TCTGTTCTTATAGAGTACTCTCTCTGT 58.235 37.037 28.42 12.89 46.84 3.41
5279 6232 8.500753 AAGAGTGTCTAGTCATTACTCTAGTG 57.499 38.462 0.00 0.00 45.22 2.74
5280 6233 7.853299 AGAGTGTCTAGTCATTACTCTAGTGA 58.147 38.462 0.00 0.00 44.42 3.41
5281 6234 8.491134 AGAGTGTCTAGTCATTACTCTAGTGAT 58.509 37.037 0.00 0.00 44.42 3.06
5282 6235 8.671384 AGTGTCTAGTCATTACTCTAGTGATC 57.329 38.462 0.00 0.00 37.15 2.92
5283 6236 8.491134 AGTGTCTAGTCATTACTCTAGTGATCT 58.509 37.037 0.00 0.00 37.15 2.75
5284 6237 9.767228 GTGTCTAGTCATTACTCTAGTGATCTA 57.233 37.037 0.00 0.00 37.15 1.98
5291 6244 9.724839 GTCATTACTCTAGTGATCTAAACACTC 57.275 37.037 0.00 0.00 45.58 3.51
5292 6245 9.688091 TCATTACTCTAGTGATCTAAACACTCT 57.312 33.333 0.00 0.00 45.58 3.24
5330 6283 8.043710 ACAGATGAAGTATTTAGGAACAGAAGG 58.956 37.037 0.00 0.00 0.00 3.46
5331 6284 8.043710 CAGATGAAGTATTTAGGAACAGAAGGT 58.956 37.037 0.00 0.00 0.00 3.50
5375 6333 5.471116 GCTATGCAATGACATCAATGGTCTA 59.529 40.000 0.00 0.00 36.26 2.59
5382 6340 7.546667 GCAATGACATCAATGGTCTAAAAATGT 59.453 33.333 0.00 0.00 36.26 2.71
5392 6350 7.656707 ATGGTCTAAAAATGTTTGATGCAAC 57.343 32.000 0.00 0.00 0.00 4.17
5393 6351 6.577103 TGGTCTAAAAATGTTTGATGCAACA 58.423 32.000 0.00 0.00 0.00 3.33
5396 6354 7.224557 GGTCTAAAAATGTTTGATGCAACACTT 59.775 33.333 0.00 0.00 0.00 3.16
5425 6398 0.249868 TGACAGCAACGAGTTGGAGG 60.250 55.000 16.50 0.00 40.74 4.30
5437 6410 2.952310 GAGTTGGAGGCTGAAAGTGTTT 59.048 45.455 0.00 0.00 35.30 2.83
5443 6416 3.255642 GGAGGCTGAAAGTGTTTTATGCA 59.744 43.478 0.00 0.00 35.30 3.96
5458 6431 6.933521 TGTTTTATGCAATGCTGGTTATGTTT 59.066 30.769 6.82 0.00 0.00 2.83
5491 6464 0.956633 ACAAGCATGCTGACCACAAG 59.043 50.000 23.48 6.55 0.00 3.16
5499 6472 5.010922 AGCATGCTGACCACAAGAAATAAAA 59.989 36.000 21.98 0.00 0.00 1.52
5500 6473 5.870978 GCATGCTGACCACAAGAAATAAAAT 59.129 36.000 11.37 0.00 0.00 1.82
5503 6476 9.421806 CATGCTGACCACAAGAAATAAAATAAA 57.578 29.630 0.00 0.00 0.00 1.40
5505 6478 9.995003 TGCTGACCACAAGAAATAAAATAAAAT 57.005 25.926 0.00 0.00 0.00 1.82
5555 6540 6.124088 CCTTTATGATAGGCAGTTTGTGAC 57.876 41.667 0.00 0.00 0.00 3.67
5556 6541 5.066505 CCTTTATGATAGGCAGTTTGTGACC 59.933 44.000 0.00 0.00 32.48 4.02
5590 6578 5.586643 GTCTTCCTGATGTTCCCAAGATAAC 59.413 44.000 0.00 0.00 0.00 1.89
5598 6586 2.107950 TCCCAAGATAACAACTGCCG 57.892 50.000 0.00 0.00 0.00 5.69
5602 6590 3.312421 CCCAAGATAACAACTGCCGTATG 59.688 47.826 0.00 0.00 0.00 2.39
5609 6597 0.944386 CAACTGCCGTATGCCCATAC 59.056 55.000 8.09 8.09 40.16 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302285 CCACTGGCAAGAGCAGGAT 59.698 57.895 0.00 0.00 44.61 3.24
1 2 2.752358 CCACTGGCAAGAGCAGGA 59.248 61.111 0.00 0.00 44.61 3.86
2 3 2.207501 ATCCCACTGGCAAGAGCAGG 62.208 60.000 0.00 0.00 44.61 4.85
3 4 0.543277 TATCCCACTGGCAAGAGCAG 59.457 55.000 0.00 0.00 44.61 4.24
5 6 0.811616 CGTATCCCACTGGCAAGAGC 60.812 60.000 0.00 0.00 41.10 4.09
6 7 0.824109 TCGTATCCCACTGGCAAGAG 59.176 55.000 0.00 0.00 0.00 2.85
7 8 1.271856 TTCGTATCCCACTGGCAAGA 58.728 50.000 0.00 0.00 0.00 3.02
8 9 2.009774 CTTTCGTATCCCACTGGCAAG 58.990 52.381 0.00 0.00 0.00 4.01
9 10 1.339631 CCTTTCGTATCCCACTGGCAA 60.340 52.381 0.00 0.00 0.00 4.52
10 11 0.251916 CCTTTCGTATCCCACTGGCA 59.748 55.000 0.00 0.00 0.00 4.92
11 12 1.095807 GCCTTTCGTATCCCACTGGC 61.096 60.000 0.00 0.00 0.00 4.85
12 13 0.810031 CGCCTTTCGTATCCCACTGG 60.810 60.000 0.00 0.00 0.00 4.00
13 14 1.429148 GCGCCTTTCGTATCCCACTG 61.429 60.000 0.00 0.00 41.07 3.66
14 15 1.153429 GCGCCTTTCGTATCCCACT 60.153 57.895 0.00 0.00 41.07 4.00
15 16 1.152383 GAGCGCCTTTCGTATCCCAC 61.152 60.000 2.29 0.00 41.07 4.61
16 17 1.143183 GAGCGCCTTTCGTATCCCA 59.857 57.895 2.29 0.00 41.07 4.37
17 18 0.179081 AAGAGCGCCTTTCGTATCCC 60.179 55.000 2.29 0.00 41.07 3.85
18 19 1.209998 GAAGAGCGCCTTTCGTATCC 58.790 55.000 2.29 0.00 41.07 2.59
19 20 1.209998 GGAAGAGCGCCTTTCGTATC 58.790 55.000 2.29 0.00 41.07 2.24
20 21 0.535335 TGGAAGAGCGCCTTTCGTAT 59.465 50.000 2.29 0.00 41.07 3.06
21 22 0.535335 ATGGAAGAGCGCCTTTCGTA 59.465 50.000 2.29 1.79 41.07 3.43
22 23 0.741221 GATGGAAGAGCGCCTTTCGT 60.741 55.000 2.29 7.60 41.07 3.85
23 24 1.432270 GGATGGAAGAGCGCCTTTCG 61.432 60.000 2.29 0.00 42.12 3.46
24 25 0.392998 TGGATGGAAGAGCGCCTTTC 60.393 55.000 2.29 8.48 34.68 2.62
25 26 0.038166 TTGGATGGAAGAGCGCCTTT 59.962 50.000 2.29 0.00 34.68 3.11
26 27 0.257039 ATTGGATGGAAGAGCGCCTT 59.743 50.000 2.29 7.40 37.93 4.35
27 28 0.257039 AATTGGATGGAAGAGCGCCT 59.743 50.000 2.29 0.00 0.00 5.52
28 29 0.665298 GAATTGGATGGAAGAGCGCC 59.335 55.000 2.29 0.00 0.00 6.53
29 30 0.665298 GGAATTGGATGGAAGAGCGC 59.335 55.000 0.00 0.00 0.00 5.92
30 31 2.216898 GAGGAATTGGATGGAAGAGCG 58.783 52.381 0.00 0.00 0.00 5.03
31 32 2.158900 TCGAGGAATTGGATGGAAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
32 33 3.462021 GTCGAGGAATTGGATGGAAGAG 58.538 50.000 0.00 0.00 0.00 2.85
33 34 2.170607 GGTCGAGGAATTGGATGGAAGA 59.829 50.000 0.00 0.00 0.00 2.87
34 35 2.565841 GGTCGAGGAATTGGATGGAAG 58.434 52.381 0.00 0.00 0.00 3.46
35 36 1.211949 GGGTCGAGGAATTGGATGGAA 59.788 52.381 0.00 0.00 0.00 3.53
36 37 0.837272 GGGTCGAGGAATTGGATGGA 59.163 55.000 0.00 0.00 0.00 3.41
37 38 0.532862 CGGGTCGAGGAATTGGATGG 60.533 60.000 0.00 0.00 0.00 3.51
38 39 0.532862 CCGGGTCGAGGAATTGGATG 60.533 60.000 0.00 0.00 0.00 3.51
39 40 0.981277 ACCGGGTCGAGGAATTGGAT 60.981 55.000 6.32 0.00 0.00 3.41
40 41 1.610554 GACCGGGTCGAGGAATTGGA 61.611 60.000 12.12 0.00 0.00 3.53
41 42 1.153429 GACCGGGTCGAGGAATTGG 60.153 63.158 12.12 0.00 0.00 3.16
42 43 0.178068 ATGACCGGGTCGAGGAATTG 59.822 55.000 21.52 0.00 34.95 2.32
43 44 0.464452 GATGACCGGGTCGAGGAATT 59.536 55.000 21.52 1.18 34.95 2.17
44 45 1.400530 GGATGACCGGGTCGAGGAAT 61.401 60.000 21.52 9.49 34.95 3.01
45 46 2.056223 GGATGACCGGGTCGAGGAA 61.056 63.158 21.52 4.64 34.95 3.36
46 47 2.441532 GGATGACCGGGTCGAGGA 60.442 66.667 21.52 5.03 34.95 3.71
47 48 3.537874 GGGATGACCGGGTCGAGG 61.538 72.222 21.52 0.00 34.95 4.63
48 49 2.298158 CTTGGGATGACCGGGTCGAG 62.298 65.000 21.52 8.86 44.64 4.04
49 50 2.284039 TTGGGATGACCGGGTCGA 60.284 61.111 21.52 11.57 44.64 4.20
50 51 1.324740 TACTTGGGATGACCGGGTCG 61.325 60.000 21.52 8.38 44.64 4.79
51 52 0.177373 GTACTTGGGATGACCGGGTC 59.823 60.000 20.36 20.36 44.64 4.46
52 53 0.545787 TGTACTTGGGATGACCGGGT 60.546 55.000 6.32 0.00 44.64 5.28
53 54 0.837272 ATGTACTTGGGATGACCGGG 59.163 55.000 6.32 0.00 44.64 5.73
54 55 2.288666 CAATGTACTTGGGATGACCGG 58.711 52.381 0.00 0.00 44.64 5.28
55 56 2.677836 CACAATGTACTTGGGATGACCG 59.322 50.000 9.05 0.00 41.05 4.79
56 57 3.950397 TCACAATGTACTTGGGATGACC 58.050 45.455 6.06 0.00 42.43 4.02
57 58 5.163622 CCATTCACAATGTACTTGGGATGAC 60.164 44.000 9.77 0.00 46.51 3.06
58 59 4.949238 CCATTCACAATGTACTTGGGATGA 59.051 41.667 9.77 3.23 46.51 2.92
59 60 4.706476 ACCATTCACAATGTACTTGGGATG 59.294 41.667 9.77 9.78 46.51 3.51
60 61 4.706476 CACCATTCACAATGTACTTGGGAT 59.294 41.667 9.77 1.12 46.51 3.85
61 62 4.078537 CACCATTCACAATGTACTTGGGA 58.921 43.478 10.89 6.06 45.63 4.37
62 63 3.367292 GCACCATTCACAATGTACTTGGG 60.367 47.826 10.89 5.76 39.81 4.12
63 64 3.507233 AGCACCATTCACAATGTACTTGG 59.493 43.478 6.23 6.23 39.30 3.61
64 65 4.771590 AGCACCATTCACAATGTACTTG 57.228 40.909 0.00 0.00 40.90 3.16
65 66 4.826733 TCAAGCACCATTCACAATGTACTT 59.173 37.500 0.00 0.00 37.18 2.24
66 67 4.397420 TCAAGCACCATTCACAATGTACT 58.603 39.130 0.00 0.00 37.18 2.73
67 68 4.764679 TCAAGCACCATTCACAATGTAC 57.235 40.909 0.00 0.00 37.18 2.90
68 69 5.243507 ACAATCAAGCACCATTCACAATGTA 59.756 36.000 0.00 0.00 37.18 2.29
69 70 4.039488 ACAATCAAGCACCATTCACAATGT 59.961 37.500 0.00 0.00 37.18 2.71
70 71 4.562082 ACAATCAAGCACCATTCACAATG 58.438 39.130 0.00 0.00 38.63 2.82
71 72 4.877378 ACAATCAAGCACCATTCACAAT 57.123 36.364 0.00 0.00 0.00 2.71
72 73 4.321156 GCTACAATCAAGCACCATTCACAA 60.321 41.667 0.00 0.00 39.83 3.33
73 74 3.191162 GCTACAATCAAGCACCATTCACA 59.809 43.478 0.00 0.00 39.83 3.58
74 75 3.728864 CGCTACAATCAAGCACCATTCAC 60.729 47.826 0.00 0.00 40.08 3.18
75 76 2.419673 CGCTACAATCAAGCACCATTCA 59.580 45.455 0.00 0.00 40.08 2.57
76 77 2.677836 TCGCTACAATCAAGCACCATTC 59.322 45.455 0.00 0.00 40.08 2.67
77 78 2.710377 TCGCTACAATCAAGCACCATT 58.290 42.857 0.00 0.00 40.08 3.16
78 79 2.401583 TCGCTACAATCAAGCACCAT 57.598 45.000 0.00 0.00 40.08 3.55
79 80 2.076100 CTTCGCTACAATCAAGCACCA 58.924 47.619 0.00 0.00 40.08 4.17
80 81 1.202076 GCTTCGCTACAATCAAGCACC 60.202 52.381 0.00 0.00 40.86 5.01
81 82 1.527793 CGCTTCGCTACAATCAAGCAC 60.528 52.381 3.62 0.00 41.17 4.40
82 83 0.721154 CGCTTCGCTACAATCAAGCA 59.279 50.000 3.62 0.00 41.17 3.91
83 84 0.721718 ACGCTTCGCTACAATCAAGC 59.278 50.000 0.00 0.00 38.31 4.01
84 85 1.992667 TGACGCTTCGCTACAATCAAG 59.007 47.619 0.00 0.00 0.00 3.02
85 86 1.724623 GTGACGCTTCGCTACAATCAA 59.275 47.619 0.00 0.00 0.00 2.57
86 87 1.067846 AGTGACGCTTCGCTACAATCA 60.068 47.619 4.18 0.00 41.01 2.57
87 88 1.321743 CAGTGACGCTTCGCTACAATC 59.678 52.381 5.89 0.00 40.84 2.67
88 89 1.067846 TCAGTGACGCTTCGCTACAAT 60.068 47.619 5.89 0.00 40.84 2.71
89 90 0.312729 TCAGTGACGCTTCGCTACAA 59.687 50.000 5.89 0.00 40.84 2.41
90 91 0.312729 TTCAGTGACGCTTCGCTACA 59.687 50.000 5.89 0.00 40.84 2.74
91 92 1.630148 ATTCAGTGACGCTTCGCTAC 58.370 50.000 5.89 0.00 40.84 3.58
92 93 3.497297 TTATTCAGTGACGCTTCGCTA 57.503 42.857 5.89 0.00 40.84 4.26
93 94 2.363788 TTATTCAGTGACGCTTCGCT 57.636 45.000 0.00 0.00 43.77 4.93
94 95 3.449322 TTTTATTCAGTGACGCTTCGC 57.551 42.857 0.00 0.00 0.00 4.70
95 96 4.957971 ACATTTTATTCAGTGACGCTTCG 58.042 39.130 0.00 0.00 0.00 3.79
96 97 8.895932 AAATACATTTTATTCAGTGACGCTTC 57.104 30.769 0.00 0.00 0.00 3.86
97 98 9.769093 GTAAATACATTTTATTCAGTGACGCTT 57.231 29.630 0.00 0.00 0.00 4.68
98 99 8.114290 CGTAAATACATTTTATTCAGTGACGCT 58.886 33.333 0.00 0.00 0.00 5.07
99 100 8.111836 TCGTAAATACATTTTATTCAGTGACGC 58.888 33.333 0.00 0.00 0.00 5.19
100 101 9.619727 CTCGTAAATACATTTTATTCAGTGACG 57.380 33.333 0.00 0.00 0.00 4.35
150 151 9.566432 GAGAAATTGAATACATCCCAACTCTAT 57.434 33.333 0.00 0.00 0.00 1.98
151 152 7.710907 CGAGAAATTGAATACATCCCAACTCTA 59.289 37.037 0.00 0.00 0.00 2.43
152 153 6.540189 CGAGAAATTGAATACATCCCAACTCT 59.460 38.462 0.00 0.00 0.00 3.24
153 154 6.316390 ACGAGAAATTGAATACATCCCAACTC 59.684 38.462 0.00 0.00 0.00 3.01
154 155 6.094048 CACGAGAAATTGAATACATCCCAACT 59.906 38.462 0.00 0.00 0.00 3.16
155 156 6.128007 ACACGAGAAATTGAATACATCCCAAC 60.128 38.462 0.00 0.00 0.00 3.77
156 157 5.943416 ACACGAGAAATTGAATACATCCCAA 59.057 36.000 0.00 0.00 0.00 4.12
157 158 5.496556 ACACGAGAAATTGAATACATCCCA 58.503 37.500 0.00 0.00 0.00 4.37
158 159 5.817816 AGACACGAGAAATTGAATACATCCC 59.182 40.000 0.00 0.00 0.00 3.85
159 160 6.535150 TCAGACACGAGAAATTGAATACATCC 59.465 38.462 0.00 0.00 0.00 3.51
160 161 7.063426 TGTCAGACACGAGAAATTGAATACATC 59.937 37.037 0.00 0.00 0.00 3.06
161 162 6.873605 TGTCAGACACGAGAAATTGAATACAT 59.126 34.615 0.00 0.00 0.00 2.29
162 163 6.220201 TGTCAGACACGAGAAATTGAATACA 58.780 36.000 0.00 0.00 0.00 2.29
163 164 6.706055 TGTCAGACACGAGAAATTGAATAC 57.294 37.500 0.00 0.00 0.00 1.89
164 165 6.929049 ACTTGTCAGACACGAGAAATTGAATA 59.071 34.615 13.79 0.00 38.72 1.75
165 166 5.760253 ACTTGTCAGACACGAGAAATTGAAT 59.240 36.000 13.79 0.00 38.72 2.57
166 167 5.006649 CACTTGTCAGACACGAGAAATTGAA 59.993 40.000 13.79 0.00 38.72 2.69
167 168 4.507756 CACTTGTCAGACACGAGAAATTGA 59.492 41.667 13.79 0.00 38.72 2.57
168 169 4.507756 TCACTTGTCAGACACGAGAAATTG 59.492 41.667 13.79 1.03 38.72 2.32
169 170 4.693283 TCACTTGTCAGACACGAGAAATT 58.307 39.130 13.79 0.00 38.72 1.82
170 171 4.322080 TCACTTGTCAGACACGAGAAAT 57.678 40.909 13.79 0.00 38.72 2.17
171 172 3.793797 TCACTTGTCAGACACGAGAAA 57.206 42.857 13.79 0.00 38.72 2.52
172 173 3.793797 TTCACTTGTCAGACACGAGAA 57.206 42.857 13.79 13.70 38.72 2.87
173 174 3.380320 TCTTTCACTTGTCAGACACGAGA 59.620 43.478 13.79 8.42 38.72 4.04
174 175 3.706698 TCTTTCACTTGTCAGACACGAG 58.293 45.455 13.79 7.33 41.93 4.18
175 176 3.793797 TCTTTCACTTGTCAGACACGA 57.206 42.857 13.79 3.48 0.00 4.35
176 177 4.302455 AGATCTTTCACTTGTCAGACACG 58.698 43.478 1.52 3.79 0.00 4.49
177 178 6.926272 ACTAAGATCTTTCACTTGTCAGACAC 59.074 38.462 14.36 0.00 0.00 3.67
178 179 7.055667 ACTAAGATCTTTCACTTGTCAGACA 57.944 36.000 14.36 0.00 0.00 3.41
179 180 7.095439 CCAACTAAGATCTTTCACTTGTCAGAC 60.095 40.741 14.36 0.00 0.00 3.51
180 181 6.931281 CCAACTAAGATCTTTCACTTGTCAGA 59.069 38.462 14.36 0.00 0.00 3.27
181 182 6.708054 ACCAACTAAGATCTTTCACTTGTCAG 59.292 38.462 14.36 3.95 0.00 3.51
182 183 6.483307 CACCAACTAAGATCTTTCACTTGTCA 59.517 38.462 14.36 0.00 0.00 3.58
183 184 6.566753 GCACCAACTAAGATCTTTCACTTGTC 60.567 42.308 14.36 0.00 0.00 3.18
184 185 5.239525 GCACCAACTAAGATCTTTCACTTGT 59.760 40.000 14.36 2.13 0.00 3.16
185 186 5.471456 AGCACCAACTAAGATCTTTCACTTG 59.529 40.000 14.36 9.58 0.00 3.16
186 187 5.625150 AGCACCAACTAAGATCTTTCACTT 58.375 37.500 14.36 0.00 0.00 3.16
187 188 5.234466 AGCACCAACTAAGATCTTTCACT 57.766 39.130 14.36 0.00 0.00 3.41
188 189 5.948992 AAGCACCAACTAAGATCTTTCAC 57.051 39.130 14.36 0.00 0.00 3.18
189 190 7.308589 GCTTAAAGCACCAACTAAGATCTTTCA 60.309 37.037 14.36 0.00 41.89 2.69
190 191 7.024171 GCTTAAAGCACCAACTAAGATCTTTC 58.976 38.462 14.36 0.00 41.89 2.62
191 192 6.717084 AGCTTAAAGCACCAACTAAGATCTTT 59.283 34.615 14.36 0.00 45.56 2.52
192 193 6.241645 AGCTTAAAGCACCAACTAAGATCTT 58.758 36.000 13.56 13.56 45.56 2.40
193 194 5.810095 AGCTTAAAGCACCAACTAAGATCT 58.190 37.500 0.00 0.00 45.56 2.75
194 195 6.502136 AAGCTTAAAGCACCAACTAAGATC 57.498 37.500 0.00 0.00 45.56 2.75
195 196 6.901081 AAAGCTTAAAGCACCAACTAAGAT 57.099 33.333 0.00 0.00 45.56 2.40
196 197 6.320164 TGAAAAGCTTAAAGCACCAACTAAGA 59.680 34.615 0.00 0.00 45.56 2.10
197 198 6.503524 TGAAAAGCTTAAAGCACCAACTAAG 58.496 36.000 0.00 0.00 45.56 2.18
198 199 6.458232 TGAAAAGCTTAAAGCACCAACTAA 57.542 33.333 0.00 0.00 45.56 2.24
199 200 6.648879 ATGAAAAGCTTAAAGCACCAACTA 57.351 33.333 0.00 0.00 45.56 2.24
200 201 5.535753 ATGAAAAGCTTAAAGCACCAACT 57.464 34.783 0.00 0.00 45.56 3.16
201 202 5.752955 TCAATGAAAAGCTTAAAGCACCAAC 59.247 36.000 0.00 0.00 45.56 3.77
202 203 5.752955 GTCAATGAAAAGCTTAAAGCACCAA 59.247 36.000 0.00 0.00 45.56 3.67
203 204 5.163468 TGTCAATGAAAAGCTTAAAGCACCA 60.163 36.000 0.00 0.00 45.56 4.17
204 205 5.288804 TGTCAATGAAAAGCTTAAAGCACC 58.711 37.500 0.00 0.00 45.56 5.01
205 206 6.562825 GCTTGTCAATGAAAAGCTTAAAGCAC 60.563 38.462 26.25 0.00 46.16 4.40
206 207 5.463061 GCTTGTCAATGAAAAGCTTAAAGCA 59.537 36.000 26.25 0.00 46.16 3.91
207 208 5.909210 GCTTGTCAATGAAAAGCTTAAAGC 58.091 37.500 26.25 3.31 46.16 3.51
215 216 7.140705 TGATGTACTTGCTTGTCAATGAAAAG 58.859 34.615 8.77 8.77 33.57 2.27
216 217 7.036996 TGATGTACTTGCTTGTCAATGAAAA 57.963 32.000 0.00 0.00 33.57 2.29
217 218 6.631971 TGATGTACTTGCTTGTCAATGAAA 57.368 33.333 0.00 0.00 33.57 2.69
218 219 6.631971 TTGATGTACTTGCTTGTCAATGAA 57.368 33.333 0.00 0.00 33.57 2.57
219 220 6.822667 ATTGATGTACTTGCTTGTCAATGA 57.177 33.333 0.00 0.00 35.62 2.57
220 221 9.577110 AATTATTGATGTACTTGCTTGTCAATG 57.423 29.630 8.25 0.00 37.04 2.82
222 223 9.979578 AAAATTATTGATGTACTTGCTTGTCAA 57.020 25.926 0.00 0.00 0.00 3.18
223 224 9.979578 AAAAATTATTGATGTACTTGCTTGTCA 57.020 25.926 0.00 0.00 0.00 3.58
247 248 1.732732 CGTGTGTTGCAACGGGAAAAA 60.733 47.619 23.79 2.11 0.00 1.94
248 249 0.179161 CGTGTGTTGCAACGGGAAAA 60.179 50.000 23.79 2.89 0.00 2.29
249 250 1.429825 CGTGTGTTGCAACGGGAAA 59.570 52.632 23.79 3.67 0.00 3.13
250 251 2.473760 CCGTGTGTTGCAACGGGAA 61.474 57.895 23.79 4.07 37.78 3.97
251 252 2.897846 CCGTGTGTTGCAACGGGA 60.898 61.111 23.79 7.92 37.78 5.14
252 253 3.175976 GACCGTGTGTTGCAACGGG 62.176 63.158 26.59 23.34 42.15 5.28
253 254 1.711060 AAGACCGTGTGTTGCAACGG 61.711 55.000 22.78 22.78 42.90 4.44
254 255 0.098025 AAAGACCGTGTGTTGCAACG 59.902 50.000 23.79 13.15 0.00 4.10
255 256 2.271821 AAAAGACCGTGTGTTGCAAC 57.728 45.000 22.83 22.83 0.00 4.17
256 257 2.600731 CAAAAAGACCGTGTGTTGCAA 58.399 42.857 0.00 0.00 0.00 4.08
257 258 1.734047 GCAAAAAGACCGTGTGTTGCA 60.734 47.619 10.72 0.00 40.74 4.08
258 259 0.920664 GCAAAAAGACCGTGTGTTGC 59.079 50.000 2.69 2.69 35.13 4.17
259 260 2.559998 AGCAAAAAGACCGTGTGTTG 57.440 45.000 0.00 0.00 0.00 3.33
260 261 3.275999 ACTAGCAAAAAGACCGTGTGTT 58.724 40.909 0.00 0.00 0.00 3.32
261 262 2.914059 ACTAGCAAAAAGACCGTGTGT 58.086 42.857 0.00 0.00 0.00 3.72
262 263 6.903883 ATATACTAGCAAAAAGACCGTGTG 57.096 37.500 0.00 0.00 0.00 3.82
263 264 9.257651 GAATATATACTAGCAAAAAGACCGTGT 57.742 33.333 0.00 0.00 0.00 4.49
264 265 9.256477 TGAATATATACTAGCAAAAAGACCGTG 57.744 33.333 0.00 0.00 0.00 4.94
265 266 9.826574 TTGAATATATACTAGCAAAAAGACCGT 57.173 29.630 0.00 0.00 0.00 4.83
274 275 9.713713 TGCCGTAATTTGAATATATACTAGCAA 57.286 29.630 0.00 0.00 0.00 3.91
275 276 9.713713 TTGCCGTAATTTGAATATATACTAGCA 57.286 29.630 0.00 0.00 0.00 3.49
276 277 9.968743 GTTGCCGTAATTTGAATATATACTAGC 57.031 33.333 0.00 0.00 0.00 3.42
292 293 9.832445 CAAGGGAATATATATAGTTGCCGTAAT 57.168 33.333 12.51 2.90 38.25 1.89
293 294 7.767198 GCAAGGGAATATATATAGTTGCCGTAA 59.233 37.037 14.51 0.00 38.25 3.18
294 295 7.125204 AGCAAGGGAATATATATAGTTGCCGTA 59.875 37.037 18.43 0.00 39.88 4.02
295 296 6.070194 AGCAAGGGAATATATATAGTTGCCGT 60.070 38.462 18.43 8.70 39.88 5.68
296 297 6.349300 AGCAAGGGAATATATATAGTTGCCG 58.651 40.000 18.43 4.67 39.88 5.69
297 298 8.581253 AAAGCAAGGGAATATATATAGTTGCC 57.419 34.615 18.43 11.15 39.88 4.52
307 308 9.832445 CTTTGTAGACTAAAGCAAGGGAATATA 57.168 33.333 0.00 0.00 0.00 0.86
308 309 8.329502 ACTTTGTAGACTAAAGCAAGGGAATAT 58.670 33.333 0.00 0.00 38.41 1.28
309 310 7.686434 ACTTTGTAGACTAAAGCAAGGGAATA 58.314 34.615 0.00 0.00 38.41 1.75
310 311 6.543735 ACTTTGTAGACTAAAGCAAGGGAAT 58.456 36.000 0.00 0.00 38.41 3.01
335 336 1.209504 GGAAGATGATGAACCCGGTGA 59.790 52.381 0.00 0.00 0.00 4.02
342 343 3.760684 AGGCTTTGTGGAAGATGATGAAC 59.239 43.478 0.00 0.00 37.57 3.18
357 358 8.087750 TGAAACCAATAATAACTCAAGGCTTTG 58.912 33.333 1.35 1.35 35.57 2.77
454 576 2.341846 TATGCGGGATGAAAAGGTCC 57.658 50.000 0.00 0.00 0.00 4.46
515 637 8.476142 CGATCAAACTTTCTTTTTGCGAAATAA 58.524 29.630 0.00 0.00 34.50 1.40
516 638 7.646130 ACGATCAAACTTTCTTTTTGCGAAATA 59.354 29.630 0.00 0.00 34.50 1.40
517 639 6.475402 ACGATCAAACTTTCTTTTTGCGAAAT 59.525 30.769 0.00 0.00 34.50 2.17
518 640 5.802956 ACGATCAAACTTTCTTTTTGCGAAA 59.197 32.000 0.00 0.00 34.50 3.46
519 641 5.336744 ACGATCAAACTTTCTTTTTGCGAA 58.663 33.333 0.00 0.00 34.50 4.70
520 642 4.915704 ACGATCAAACTTTCTTTTTGCGA 58.084 34.783 0.00 0.00 34.50 5.10
521 643 6.911484 ATACGATCAAACTTTCTTTTTGCG 57.089 33.333 0.00 0.00 34.50 4.85
539 661 9.114952 TGCTGATGTTTTTCCATATAAATACGA 57.885 29.630 0.00 0.00 0.00 3.43
540 662 9.897744 ATGCTGATGTTTTTCCATATAAATACG 57.102 29.630 0.00 0.00 0.00 3.06
552 674 9.319143 AGTACAGTATAGATGCTGATGTTTTTC 57.681 33.333 13.68 0.00 42.19 2.29
653 777 9.840427 TTTTCTGAAGTCAGTTTACAAAAGAAG 57.160 29.630 8.14 0.00 44.12 2.85
666 790 8.390354 TCGCATATAACATTTTTCTGAAGTCAG 58.610 33.333 1.65 1.65 45.08 3.51
682 810 6.510638 CGGGTCCTTTTTACTTCGCATATAAC 60.511 42.308 0.00 0.00 0.00 1.89
686 814 3.055963 TCGGGTCCTTTTTACTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
687 815 2.081462 CGGGTCCTTTTTACTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
688 816 1.070445 TCGGGTCCTTTTTACTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
689 817 1.799544 TCGGGTCCTTTTTACTTCGC 58.200 50.000 0.00 0.00 0.00 4.70
690 818 2.676342 CCATCGGGTCCTTTTTACTTCG 59.324 50.000 0.00 0.00 0.00 3.79
691 819 3.939592 CTCCATCGGGTCCTTTTTACTTC 59.060 47.826 0.00 0.00 34.93 3.01
692 820 3.329814 ACTCCATCGGGTCCTTTTTACTT 59.670 43.478 0.00 0.00 34.93 2.24
693 821 2.910977 ACTCCATCGGGTCCTTTTTACT 59.089 45.455 0.00 0.00 34.93 2.24
695 823 2.617021 GCACTCCATCGGGTCCTTTTTA 60.617 50.000 0.00 0.00 34.93 1.52
709 839 6.294361 TGCTAGAATACTTTTAGCACTCCA 57.706 37.500 7.73 0.00 43.38 3.86
715 845 5.470437 GGGTGGATGCTAGAATACTTTTAGC 59.530 44.000 0.00 3.25 40.09 3.09
724 865 4.803329 ATCAAAGGGTGGATGCTAGAAT 57.197 40.909 0.00 0.00 0.00 2.40
725 866 4.591321 AATCAAAGGGTGGATGCTAGAA 57.409 40.909 0.00 0.00 0.00 2.10
726 867 4.591321 AAATCAAAGGGTGGATGCTAGA 57.409 40.909 0.00 0.00 0.00 2.43
727 868 5.192927 TGTAAATCAAAGGGTGGATGCTAG 58.807 41.667 0.00 0.00 0.00 3.42
728 869 5.186256 TGTAAATCAAAGGGTGGATGCTA 57.814 39.130 0.00 0.00 0.00 3.49
729 870 4.046286 TGTAAATCAAAGGGTGGATGCT 57.954 40.909 0.00 0.00 0.00 3.79
730 871 4.494484 GTTGTAAATCAAAGGGTGGATGC 58.506 43.478 0.00 0.00 37.81 3.91
731 872 4.772100 AGGTTGTAAATCAAAGGGTGGATG 59.228 41.667 0.00 0.00 37.81 3.51
732 873 4.772100 CAGGTTGTAAATCAAAGGGTGGAT 59.228 41.667 0.00 0.00 37.81 3.41
733 874 4.148838 CAGGTTGTAAATCAAAGGGTGGA 58.851 43.478 0.00 0.00 37.81 4.02
734 875 3.258123 CCAGGTTGTAAATCAAAGGGTGG 59.742 47.826 0.00 0.00 37.81 4.61
735 876 4.148838 TCCAGGTTGTAAATCAAAGGGTG 58.851 43.478 0.00 0.00 37.81 4.61
736 877 4.463050 TCCAGGTTGTAAATCAAAGGGT 57.537 40.909 0.00 0.00 37.81 4.34
737 878 6.165577 CAATTCCAGGTTGTAAATCAAAGGG 58.834 40.000 0.00 0.00 37.81 3.95
738 879 5.639082 GCAATTCCAGGTTGTAAATCAAAGG 59.361 40.000 0.00 0.00 37.81 3.11
739 880 5.639082 GGCAATTCCAGGTTGTAAATCAAAG 59.361 40.000 0.00 0.00 34.61 2.77
740 881 5.512232 GGGCAATTCCAGGTTGTAAATCAAA 60.512 40.000 0.00 0.00 35.56 2.69
744 885 3.515562 TGGGCAATTCCAGGTTGTAAAT 58.484 40.909 0.00 0.00 36.21 1.40
764 905 1.529226 TGGTTCAACTTGCCGGTATG 58.471 50.000 1.90 3.01 0.00 2.39
766 907 1.072489 TCATGGTTCAACTTGCCGGTA 59.928 47.619 1.90 0.00 0.00 4.02
779 920 5.885352 TGGAATGATTAACGACATCATGGTT 59.115 36.000 8.73 0.00 39.94 3.67
791 932 6.154363 TGGTCCCTTTGATTGGAATGATTAAC 59.846 38.462 0.00 0.00 31.03 2.01
830 977 1.745489 GTCACAAGACGGGGGATGC 60.745 63.158 0.00 0.00 34.60 3.91
840 987 3.653344 CTTCCGATCACAAGTCACAAGA 58.347 45.455 0.00 0.00 0.00 3.02
841 988 2.158449 GCTTCCGATCACAAGTCACAAG 59.842 50.000 0.00 0.00 0.00 3.16
881 1047 1.303074 GGGGGAACGGACCAAAGTC 60.303 63.158 0.00 0.00 42.73 3.01
884 1050 3.169956 ACGGGGGAACGGACCAAA 61.170 61.111 0.00 0.00 38.39 3.28
885 1051 3.628982 GACGGGGGAACGGACCAA 61.629 66.667 0.00 0.00 38.39 3.67
887 1053 3.767806 GAGACGGGGGAACGGACC 61.768 72.222 0.00 0.00 38.39 4.46
888 1054 4.125695 CGAGACGGGGGAACGGAC 62.126 72.222 0.00 0.00 38.39 4.79
894 1110 2.271497 GAGAGTCGAGACGGGGGA 59.729 66.667 0.00 0.00 36.20 4.81
911 1127 1.859427 TTGGGTTCGGTCGAGAGTCG 61.859 60.000 0.00 0.00 42.10 4.18
912 1128 0.388263 GTTGGGTTCGGTCGAGAGTC 60.388 60.000 0.00 0.00 0.00 3.36
913 1129 1.664306 GTTGGGTTCGGTCGAGAGT 59.336 57.895 0.00 0.00 0.00 3.24
914 1130 1.080025 GGTTGGGTTCGGTCGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
915 1131 2.576832 GGGTTGGGTTCGGTCGAGA 61.577 63.158 0.00 0.00 0.00 4.04
923 1139 3.562732 CTGGGTCGGGGTTGGGTTC 62.563 68.421 0.00 0.00 0.00 3.62
924 1140 3.576259 CTGGGTCGGGGTTGGGTT 61.576 66.667 0.00 0.00 0.00 4.11
948 1164 4.354943 ACTGGGGACTGGGGAGGG 62.355 72.222 0.00 0.00 0.00 4.30
949 1165 2.689034 GACTGGGGACTGGGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
950 1166 2.689034 GGACTGGGGACTGGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
951 1167 3.537506 TGGACTGGGGACTGGGGA 61.538 66.667 0.00 0.00 0.00 4.81
953 1169 1.500783 AATGTGGACTGGGGACTGGG 61.501 60.000 0.00 0.00 0.00 4.45
956 1172 1.208165 GGGAATGTGGACTGGGGACT 61.208 60.000 0.00 0.00 0.00 3.85
957 1173 1.303282 GGGAATGTGGACTGGGGAC 59.697 63.158 0.00 0.00 0.00 4.46
968 1189 1.645402 CGGAGGGGAATGGGGAATGT 61.645 60.000 0.00 0.00 0.00 2.71
978 1199 4.761058 AGCGAGCTCGGAGGGGAA 62.761 66.667 35.10 0.00 40.23 3.97
1065 1286 0.809385 CGAAGTCGAGGTAGAAGGCA 59.191 55.000 0.00 0.00 43.02 4.75
1111 1332 4.180946 CGCGGAGAGGGTGACGAG 62.181 72.222 0.00 0.00 0.00 4.18
1132 1353 4.394712 GAGCAGGTCCCCGGTGTG 62.395 72.222 0.00 0.00 0.00 3.82
1141 1362 2.179517 CGTGTCGAGGAGCAGGTC 59.820 66.667 0.00 0.00 0.00 3.85
1142 1363 4.057428 GCGTGTCGAGGAGCAGGT 62.057 66.667 0.00 0.00 0.00 4.00
1206 1427 3.878667 GAGAAGGGGATGGGGGCG 61.879 72.222 0.00 0.00 0.00 6.13
1207 1428 3.502875 GGAGAAGGGGATGGGGGC 61.503 72.222 0.00 0.00 0.00 5.80
1208 1429 2.778717 GGGAGAAGGGGATGGGGG 60.779 72.222 0.00 0.00 0.00 5.40
1209 1430 1.772156 GAGGGAGAAGGGGATGGGG 60.772 68.421 0.00 0.00 0.00 4.96
1210 1431 2.143419 CGAGGGAGAAGGGGATGGG 61.143 68.421 0.00 0.00 0.00 4.00
1211 1432 2.812619 GCGAGGGAGAAGGGGATGG 61.813 68.421 0.00 0.00 0.00 3.51
1212 1433 2.812619 GGCGAGGGAGAAGGGGATG 61.813 68.421 0.00 0.00 0.00 3.51
1213 1434 2.446802 GGCGAGGGAGAAGGGGAT 60.447 66.667 0.00 0.00 0.00 3.85
1623 2283 4.904466 GCGAAGGCGAAGAGGTAA 57.096 55.556 0.00 0.00 40.82 2.85
1878 2538 1.372087 CTGCAGCGTCCCCTTTGATC 61.372 60.000 0.00 0.00 0.00 2.92
1926 2586 2.237392 GAGGTTTCCAGTCCAGCTATGT 59.763 50.000 0.00 0.00 0.00 2.29
1932 2592 2.616510 GGTGATGAGGTTTCCAGTCCAG 60.617 54.545 0.00 0.00 0.00 3.86
1989 2649 5.316167 AGCACACATGAGGACAAAAAGATA 58.684 37.500 0.00 0.00 0.00 1.98
2017 2677 3.749088 TGTACCCGTGCACAAGATAAAAG 59.251 43.478 18.64 0.00 0.00 2.27
2027 2696 1.732941 TTCATGATGTACCCGTGCAC 58.267 50.000 6.82 6.82 0.00 4.57
2030 2699 3.969117 CCATTTCATGATGTACCCGTG 57.031 47.619 0.00 0.00 0.00 4.94
2375 3055 1.203038 TGGGGCAAAGCAGATGAGAAA 60.203 47.619 0.00 0.00 0.00 2.52
2379 3059 1.714541 TTTTGGGGCAAAGCAGATGA 58.285 45.000 0.00 0.00 34.72 2.92
2391 3071 4.097741 TGAATATCACTCGCAATTTTGGGG 59.902 41.667 7.41 2.06 41.01 4.96
2409 3090 8.147704 TGACAGTTCTAGTTGAATGTGTGAATA 58.852 33.333 9.08 0.00 35.89 1.75
2410 3091 6.992123 TGACAGTTCTAGTTGAATGTGTGAAT 59.008 34.615 9.08 0.00 35.89 2.57
2447 3128 2.156098 GTGAAACCCTGTATGCGGAAA 58.844 47.619 0.00 0.00 0.00 3.13
2714 3397 6.687604 AGAATGGTGCAAATAAGTGTAAACC 58.312 36.000 0.00 0.00 0.00 3.27
3219 3902 6.594788 AATTAACAAAGCATGTCTGATGGT 57.405 33.333 0.00 0.00 42.99 3.55
3320 4003 7.918076 AGGAACAATCTATTCTAACTGGTCAA 58.082 34.615 0.00 0.00 0.00 3.18
3350 4033 6.636454 ACAAATAGGTTATCTCTTGTCCCA 57.364 37.500 0.00 0.00 30.38 4.37
3424 4107 1.691976 TCTGGACAACCGTTCTCACAT 59.308 47.619 0.00 0.00 39.42 3.21
3445 4128 4.583907 TGAATCAAAAGGCATGTGACTTGA 59.416 37.500 1.11 0.00 43.96 3.02
3457 4140 6.938507 TGATTTCCCTTGATGAATCAAAAGG 58.061 36.000 16.73 16.73 45.26 3.11
3869 4600 6.060028 TGAAACAACTGCTTCAGTATCAAC 57.940 37.500 0.00 0.00 44.62 3.18
3910 4641 3.756117 AGCTAAAGAGGGTGGAACTTTG 58.244 45.455 0.00 0.00 36.74 2.77
4106 4841 2.224523 CCTAGCCTGAACACACCTGAAA 60.225 50.000 0.00 0.00 0.00 2.69
4303 5038 9.134734 GACAAATGGCGATAAAAATCAGTTAAA 57.865 29.630 0.00 0.00 0.00 1.52
4383 5118 1.068748 GCGACTTTGACCTCGTAGTCA 60.069 52.381 6.24 6.24 44.89 3.41
4449 5184 3.415212 CTTCAAGCATTTCTCCACCTCA 58.585 45.455 0.00 0.00 0.00 3.86
4602 5337 0.610174 AAAGGATGCTCTCTGCGACA 59.390 50.000 0.00 0.00 46.63 4.35
4608 5343 3.430042 TGCTTCAAAAGGATGCTCTCT 57.570 42.857 0.00 0.00 44.64 3.10
4679 5414 3.201290 CAGTCAATAGGCATCACAGACC 58.799 50.000 0.00 0.00 0.00 3.85
4680 5415 3.866651 ACAGTCAATAGGCATCACAGAC 58.133 45.455 0.00 0.00 0.00 3.51
4684 5419 3.441572 AGCAAACAGTCAATAGGCATCAC 59.558 43.478 0.00 0.00 0.00 3.06
4785 5523 1.397343 GCACATGCAGTCTCACATGAG 59.603 52.381 16.00 10.78 45.23 2.90
4806 5544 9.628500 GTTCCTTACAGGGTCAGAATAAATTAT 57.372 33.333 0.00 0.00 35.59 1.28
4876 5614 6.040955 AGACGATGACCATTAAGAGCTCATAA 59.959 38.462 17.77 15.36 0.00 1.90
4915 5653 9.935241 ATTGCTAGACTAATATTATCACCACAG 57.065 33.333 0.00 0.00 0.00 3.66
4933 5775 3.981071 AAGCACAGGTACATTGCTAGA 57.019 42.857 13.61 0.00 45.92 2.43
4944 5786 2.584835 TTCCATAGCAAAGCACAGGT 57.415 45.000 0.00 0.00 0.00 4.00
4968 5810 4.463186 ACACGCTACTGATAATATCCTCCC 59.537 45.833 0.00 0.00 0.00 4.30
5017 5859 1.963338 GCTGGCAGTCGCTTGAACT 60.963 57.895 17.16 0.00 38.60 3.01
5022 5864 1.079543 CACTAGCTGGCAGTCGCTT 60.080 57.895 17.16 0.00 37.68 4.68
5032 5874 2.270205 CCACTGGGGCACTAGCTG 59.730 66.667 0.00 0.00 41.70 4.24
5046 5888 1.097547 CCATGACGCTCAATCCCCAC 61.098 60.000 0.00 0.00 0.00 4.61
5090 5976 0.535102 CATAACCTCCATGACCGCCC 60.535 60.000 0.00 0.00 0.00 6.13
5092 5978 1.166531 GCCATAACCTCCATGACCGC 61.167 60.000 0.00 0.00 0.00 5.68
5093 5979 0.180171 TGCCATAACCTCCATGACCG 59.820 55.000 0.00 0.00 0.00 4.79
5097 5983 1.168407 CGGCTGCCATAACCTCCATG 61.168 60.000 20.29 0.00 0.00 3.66
5100 5986 2.203209 CCGGCTGCCATAACCTCC 60.203 66.667 20.29 0.00 0.00 4.30
5103 6056 0.951558 CATAACCGGCTGCCATAACC 59.048 55.000 20.29 0.00 0.00 2.85
5105 6058 0.106967 TGCATAACCGGCTGCCATAA 60.107 50.000 20.29 0.65 37.59 1.90
5167 6120 9.995003 AAAACAGAATTGCCAAAACATCTTATA 57.005 25.926 0.00 0.00 0.00 0.98
5168 6121 8.907222 AAAACAGAATTGCCAAAACATCTTAT 57.093 26.923 0.00 0.00 0.00 1.73
5169 6122 8.729805 AAAAACAGAATTGCCAAAACATCTTA 57.270 26.923 0.00 0.00 0.00 2.10
5170 6123 7.628769 AAAAACAGAATTGCCAAAACATCTT 57.371 28.000 0.00 0.00 0.00 2.40
5171 6124 8.729805 TTAAAAACAGAATTGCCAAAACATCT 57.270 26.923 0.00 0.00 0.00 2.90
5172 6125 9.949174 AATTAAAAACAGAATTGCCAAAACATC 57.051 25.926 0.00 0.00 0.00 3.06
5197 6150 9.585099 GAACAGAATTGCCAAAACATCATATAA 57.415 29.630 0.00 0.00 0.00 0.98
5198 6151 8.970020 AGAACAGAATTGCCAAAACATCATATA 58.030 29.630 0.00 0.00 0.00 0.86
5199 6152 7.844009 AGAACAGAATTGCCAAAACATCATAT 58.156 30.769 0.00 0.00 0.00 1.78
5200 6153 7.230849 AGAACAGAATTGCCAAAACATCATA 57.769 32.000 0.00 0.00 0.00 2.15
5201 6154 6.105397 AGAACAGAATTGCCAAAACATCAT 57.895 33.333 0.00 0.00 0.00 2.45
5202 6155 5.534207 AGAACAGAATTGCCAAAACATCA 57.466 34.783 0.00 0.00 0.00 3.07
5203 6156 9.294030 CTATAAGAACAGAATTGCCAAAACATC 57.706 33.333 0.00 0.00 0.00 3.06
5204 6157 9.023962 TCTATAAGAACAGAATTGCCAAAACAT 57.976 29.630 0.00 0.00 0.00 2.71
5205 6158 8.402798 TCTATAAGAACAGAATTGCCAAAACA 57.597 30.769 0.00 0.00 0.00 2.83
5206 6159 8.515414 ACTCTATAAGAACAGAATTGCCAAAAC 58.485 33.333 0.00 0.00 0.00 2.43
5207 6160 8.635765 ACTCTATAAGAACAGAATTGCCAAAA 57.364 30.769 0.00 0.00 0.00 2.44
5208 6161 9.162764 GTACTCTATAAGAACAGAATTGCCAAA 57.837 33.333 0.00 0.00 0.00 3.28
5209 6162 8.540388 AGTACTCTATAAGAACAGAATTGCCAA 58.460 33.333 0.00 0.00 0.00 4.52
5210 6163 8.079211 AGTACTCTATAAGAACAGAATTGCCA 57.921 34.615 0.00 0.00 0.00 4.92
5211 6164 8.417884 AGAGTACTCTATAAGAACAGAATTGCC 58.582 37.037 24.04 0.00 38.35 4.52
5212 6165 9.458374 GAGAGTACTCTATAAGAACAGAATTGC 57.542 37.037 25.23 3.15 40.61 3.56
5253 6206 9.602568 CACTAGAGTAATGACTAGACACTCTTA 57.397 37.037 15.32 2.14 42.46 2.10
5254 6207 8.322828 TCACTAGAGTAATGACTAGACACTCTT 58.677 37.037 15.32 2.95 42.46 2.85
5255 6208 7.853299 TCACTAGAGTAATGACTAGACACTCT 58.147 38.462 14.76 14.76 45.84 3.24
5256 6209 8.671384 ATCACTAGAGTAATGACTAGACACTC 57.329 38.462 0.00 0.00 39.25 3.51
5257 6210 8.491134 AGATCACTAGAGTAATGACTAGACACT 58.509 37.037 0.00 0.00 39.25 3.55
5258 6211 8.671384 AGATCACTAGAGTAATGACTAGACAC 57.329 38.462 0.00 0.00 39.25 3.67
5264 6217 9.469097 AGTGTTTAGATCACTAGAGTAATGACT 57.531 33.333 0.00 0.00 43.17 3.41
5265 6218 9.724839 GAGTGTTTAGATCACTAGAGTAATGAC 57.275 37.037 0.00 0.00 44.68 3.06
5266 6219 9.688091 AGAGTGTTTAGATCACTAGAGTAATGA 57.312 33.333 0.00 0.00 44.68 2.57
5304 6257 8.043710 CCTTCTGTTCCTAAATACTTCATCTGT 58.956 37.037 0.00 0.00 0.00 3.41
5305 6258 8.043710 ACCTTCTGTTCCTAAATACTTCATCTG 58.956 37.037 0.00 0.00 0.00 2.90
5306 6259 8.043710 CACCTTCTGTTCCTAAATACTTCATCT 58.956 37.037 0.00 0.00 0.00 2.90
5307 6260 7.824779 ACACCTTCTGTTCCTAAATACTTCATC 59.175 37.037 0.00 0.00 0.00 2.92
5308 6261 7.690256 ACACCTTCTGTTCCTAAATACTTCAT 58.310 34.615 0.00 0.00 0.00 2.57
5309 6262 7.074653 ACACCTTCTGTTCCTAAATACTTCA 57.925 36.000 0.00 0.00 0.00 3.02
5310 6263 7.278203 GCTACACCTTCTGTTCCTAAATACTTC 59.722 40.741 0.00 0.00 33.91 3.01
5319 6272 5.491982 CAATAAGCTACACCTTCTGTTCCT 58.508 41.667 0.00 0.00 33.91 3.36
5325 6278 2.093447 AGCGCAATAAGCTACACCTTCT 60.093 45.455 11.47 0.00 44.05 2.85
5328 6281 1.656652 CAGCGCAATAAGCTACACCT 58.343 50.000 11.47 0.00 44.06 4.00
5330 6283 1.009829 AGCAGCGCAATAAGCTACAC 58.990 50.000 11.47 0.00 44.06 2.90
5331 6284 1.398041 CAAGCAGCGCAATAAGCTACA 59.602 47.619 11.47 0.00 44.06 2.74
5366 6324 7.655236 TGCATCAAACATTTTTAGACCATTG 57.345 32.000 0.00 0.00 0.00 2.82
5382 6340 8.033626 TCATTGCATATAAAGTGTTGCATCAAA 58.966 29.630 0.00 0.00 43.91 2.69
5392 6350 5.453266 CGTTGCTGTCATTGCATATAAAGTG 59.547 40.000 0.00 0.00 40.34 3.16
5393 6351 5.353956 TCGTTGCTGTCATTGCATATAAAGT 59.646 36.000 0.00 0.00 40.34 2.66
5396 6354 4.875536 ACTCGTTGCTGTCATTGCATATAA 59.124 37.500 0.00 0.00 40.34 0.98
5400 6358 1.527034 ACTCGTTGCTGTCATTGCAT 58.473 45.000 0.00 0.00 40.34 3.96
5402 6360 1.664016 CCAACTCGTTGCTGTCATTGC 60.664 52.381 4.30 0.00 39.16 3.56
5425 6398 4.687483 AGCATTGCATAAAACACTTTCAGC 59.313 37.500 11.91 0.00 0.00 4.26
5437 6410 6.278172 TCAAACATAACCAGCATTGCATAA 57.722 33.333 11.91 0.00 0.00 1.90
5443 6416 7.332430 CACATCATTTCAAACATAACCAGCATT 59.668 33.333 0.00 0.00 0.00 3.56
5499 6472 8.448816 AGCCCCTCTAGCTTGTATTTATTTTAT 58.551 33.333 0.00 0.00 37.24 1.40
5500 6473 7.719633 CAGCCCCTCTAGCTTGTATTTATTTTA 59.280 37.037 0.00 0.00 38.95 1.52
5503 6476 5.456763 CCAGCCCCTCTAGCTTGTATTTATT 60.457 44.000 0.00 0.00 38.95 1.40
5505 6478 3.391296 CCAGCCCCTCTAGCTTGTATTTA 59.609 47.826 0.00 0.00 38.95 1.40
5511 6496 2.191641 GCCAGCCCCTCTAGCTTG 59.808 66.667 0.00 0.00 38.95 4.01
5541 6526 1.347707 CTCTGGGTCACAAACTGCCTA 59.652 52.381 0.00 0.00 0.00 3.93
5555 6540 0.322975 CAGGAAGACCACACTCTGGG 59.677 60.000 0.00 0.00 45.78 4.45
5609 6597 0.457851 TCTTTGCACACCCCAAAACG 59.542 50.000 0.00 0.00 32.37 3.60
5614 6602 0.770499 TGATCTCTTTGCACACCCCA 59.230 50.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.