AutoCloner

Multiple sequence alignment - TraesCS5A01G472600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G472600	chr5A	100.000	3483	0	0	1	3483	649425824	649429306	0.000000e+00	6433.0
1	TraesCS5A01G472600	chr5A	85.506	1987	204	49	632	2581	649401625	649403564	0.000000e+00	1997.0
2	TraesCS5A01G472600	chr5B	92.938	2124	88	20	532	2633	656838749	656840832	0.000000e+00	3035.0
3	TraesCS5A01G472600	chr5B	87.069	1655	161	26	922	2575	656805090	656806692	0.000000e+00	1821.0
4	TraesCS5A01G472600	chr5B	88.710	682	69	4	2746	3423	656842228	656842905	0.000000e+00	826.0
5	TraesCS5A01G472600	chr5B	95.556	90	4	0	1	90	656826084	656826173	1.010000e-30	145.0
6	TraesCS5A01G472600	chr5B	100.000	28	0	0	252	279	129256726	129256753	6.000000e-03	52.8
7	TraesCS5A01G472600	chr5B	94.286	35	1	1	261	294	610658374	610658340	6.000000e-03	52.8
8	TraesCS5A01G472600	chr5D	92.315	2069	83	31	503	2551	520887744	520889756	0.000000e+00	2870.0
9	TraesCS5A01G472600	chr5D	85.223	1976	208	51	632	2579	520860222	520862141	0.000000e+00	1954.0
10	TraesCS5A01G472600	chr5D	86.053	380	47	4	3025	3400	520890185	520890562	1.510000e-108	403.0
11	TraesCS5A01G472600	chr1D	75.871	746	160	15	2683	3418	435471661	435472396	2.560000e-96	363.0
12	TraesCS5A01G472600	chr6B	72.555	685	171	14	2682	3357	706015547	706016223	1.270000e-49	207.0
13	TraesCS5A01G472600	chr6B	72.555	685	171	14	2682	3357	706213376	706214052	1.270000e-49	207.0
14	TraesCS5A01G472600	chr2B	72.902	572	129	18	2797	3357	198156146	198156702	1.290000e-39	174.0
15	TraesCS5A01G472600	chr7D	72.112	606	152	13	2760	3357	404058062	404058658	2.150000e-37	167.0
16	TraesCS5A01G472600	chr7B	74.233	326	69	9	3104	3416	413572810	413573133	4.720000e-24	122.0
17	TraesCS5A01G472600	chr4B	94.595	37	1	1	184	219	580384784	580384748	4.860000e-04	56.5
18	TraesCS5A01G472600	chrUn	100.000	28	0	0	455	482	50629120	50629147	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G472600	chr5A	649425824	649429306	3482	False	6433.0	6433	100.000	1	3483	1	chr5A.!!$F2	3482
1	TraesCS5A01G472600	chr5A	649401625	649403564	1939	False	1997.0	1997	85.506	632	2581	1	chr5A.!!$F1	1949
2	TraesCS5A01G472600	chr5B	656838749	656842905	4156	False	1930.5	3035	90.824	532	3423	2	chr5B.!!$F4	2891
3	TraesCS5A01G472600	chr5B	656805090	656806692	1602	False	1821.0	1821	87.069	922	2575	1	chr5B.!!$F2	1653
4	TraesCS5A01G472600	chr5D	520860222	520862141	1919	False	1954.0	1954	85.223	632	2579	1	chr5D.!!$F1	1947
5	TraesCS5A01G472600	chr5D	520887744	520890562	2818	False	1636.5	2870	89.184	503	3400	2	chr5D.!!$F2	2897
6	TraesCS5A01G472600	chr1D	435471661	435472396	735	False	363.0	363	75.871	2683	3418	1	chr1D.!!$F1	735
7	TraesCS5A01G472600	chr6B	706015547	706016223	676	False	207.0	207	72.555	2682	3357	1	chr6B.!!$F1	675
8	TraesCS5A01G472600	chr6B	706213376	706214052	676	False	207.0	207	72.555	2682	3357	1	chr6B.!!$F2	675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
928	975	0.037882	TCTCTCGCTGAGCACTTTGG	60.038	55.0	4.88	0.0	42.38	3.28	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2690	3004	0.916845	AGAGAAGAGGGGAAAGGGCC	60.917	60.0	0.0	0.0	0.0	5.8	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	3.965292	CGCGGATTAGTAGAACTCAGA	57.035	47.619	0.00	0.00	0.00	3.27
21	22	4.288670	CGCGGATTAGTAGAACTCAGAA	57.711	45.455	0.00	0.00	0.00	3.02
22	23	4.861210	CGCGGATTAGTAGAACTCAGAAT	58.139	43.478	0.00	0.00	0.00	2.40
23	24	5.998553	CGCGGATTAGTAGAACTCAGAATA	58.001	41.667	0.00	0.00	0.00	1.75
24	25	6.436261	CGCGGATTAGTAGAACTCAGAATAA	58.564	40.000	0.00	0.00	0.00	1.40
25	26	6.916387	CGCGGATTAGTAGAACTCAGAATAAA	59.084	38.462	0.00	0.00	0.00	1.40
26	27	7.113684	CGCGGATTAGTAGAACTCAGAATAAAG	59.886	40.741	0.00	0.00	0.00	1.85
27	28	7.095982	GCGGATTAGTAGAACTCAGAATAAAGC	60.096	40.741	0.00	0.00	0.00	3.51
28	29	8.138712	CGGATTAGTAGAACTCAGAATAAAGCT	58.861	37.037	0.00	0.00	0.00	3.74
33	34	8.582657	AGTAGAACTCAGAATAAAGCTAGTCA	57.417	34.615	0.00	0.00	0.00	3.41
34	35	8.463607	AGTAGAACTCAGAATAAAGCTAGTCAC	58.536	37.037	0.00	0.00	0.00	3.67
35	36	7.475137	AGAACTCAGAATAAAGCTAGTCACT	57.525	36.000	0.00	0.00	0.00	3.41
36	37	8.582657	AGAACTCAGAATAAAGCTAGTCACTA	57.417	34.615	0.00	0.00	0.00	2.74
37	38	8.682710	AGAACTCAGAATAAAGCTAGTCACTAG	58.317	37.037	7.56	7.56	37.16	2.57
38	39	7.948034	ACTCAGAATAAAGCTAGTCACTAGT	57.052	36.000	13.57	0.00	36.53	2.57
39	40	8.356000	ACTCAGAATAAAGCTAGTCACTAGTT	57.644	34.615	13.57	4.38	36.53	2.24
40	41	9.463902	ACTCAGAATAAAGCTAGTCACTAGTTA	57.536	33.333	13.57	5.64	36.53	2.24
41	42	9.944663	CTCAGAATAAAGCTAGTCACTAGTTAG	57.055	37.037	13.57	0.00	36.53	2.34
42	43	8.407064	TCAGAATAAAGCTAGTCACTAGTTAGC	58.593	37.037	13.57	14.63	39.99	3.09
43	44	7.377397	CAGAATAAAGCTAGTCACTAGTTAGCG	59.623	40.741	13.57	0.00	43.43	4.26
44	45	4.373348	AAAGCTAGTCACTAGTTAGCGG	57.627	45.455	13.57	0.00	43.43	5.52
45	46	1.677052	AGCTAGTCACTAGTTAGCGGC	59.323	52.381	13.57	8.50	43.43	6.53
46	47	1.269154	GCTAGTCACTAGTTAGCGGCC	60.269	57.143	13.57	0.00	36.53	6.13
47	48	2.299521	CTAGTCACTAGTTAGCGGCCT	58.700	52.381	3.36	0.00	30.16	5.19
48	49	2.431954	AGTCACTAGTTAGCGGCCTA	57.568	50.000	0.00	0.00	0.00	3.93
49	50	2.946785	AGTCACTAGTTAGCGGCCTAT	58.053	47.619	0.00	0.00	0.00	2.57
50	51	2.623889	AGTCACTAGTTAGCGGCCTATG	59.376	50.000	0.00	0.00	0.00	2.23
51	52	1.961394	TCACTAGTTAGCGGCCTATGG	59.039	52.381	0.00	0.00	0.00	2.74
52	53	1.000955	CACTAGTTAGCGGCCTATGGG	59.999	57.143	0.00	0.00	0.00	4.00
67	68	2.582978	GGGCGAAGTACCCCTCAC	59.417	66.667	0.00	0.00	42.01	3.51
68	69	2.288025	GGGCGAAGTACCCCTCACA	61.288	63.158	0.00	0.00	42.01	3.58
69	70	1.079336	GGCGAAGTACCCCTCACAC	60.079	63.158	0.00	0.00	0.00	3.82
70	71	1.445582	GCGAAGTACCCCTCACACG	60.446	63.158	0.00	0.00	0.00	4.49
71	72	1.214589	CGAAGTACCCCTCACACGG	59.785	63.158	0.00	0.00	0.00	4.94
72	73	1.079336	GAAGTACCCCTCACACGGC	60.079	63.158	0.00	0.00	0.00	5.68
73	74	1.823169	GAAGTACCCCTCACACGGCA	61.823	60.000	0.00	0.00	0.00	5.69
74	75	2.047560	GTACCCCTCACACGGCAC	60.048	66.667	0.00	0.00	0.00	5.01
75	76	2.203728	TACCCCTCACACGGCACT	60.204	61.111	0.00	0.00	0.00	4.40
76	77	2.280552	TACCCCTCACACGGCACTC	61.281	63.158	0.00	0.00	0.00	3.51
77	78	2.725127	TACCCCTCACACGGCACTCT	62.725	60.000	0.00	0.00	0.00	3.24
78	79	2.047844	CCCTCACACGGCACTCTG	60.048	66.667	0.00	0.00	0.00	3.35
79	80	2.047844	CCTCACACGGCACTCTGG	60.048	66.667	0.00	0.00	0.00	3.86
80	81	2.737180	CTCACACGGCACTCTGGT	59.263	61.111	0.00	0.00	0.00	4.00
81	82	1.069765	CTCACACGGCACTCTGGTT	59.930	57.895	0.00	0.00	0.00	3.67
82	83	1.224069	CTCACACGGCACTCTGGTTG	61.224	60.000	0.00	0.00	0.00	3.77
83	84	2.591715	ACACGGCACTCTGGTTGC	60.592	61.111	0.00	0.00	0.00	4.17
84	85	2.591429	CACGGCACTCTGGTTGCA	60.591	61.111	0.00	0.00	0.00	4.08
85	86	2.186160	CACGGCACTCTGGTTGCAA	61.186	57.895	0.00	0.00	0.00	4.08
86	87	1.893808	ACGGCACTCTGGTTGCAAG	60.894	57.895	0.00	0.00	0.00	4.01
87	88	2.620112	CGGCACTCTGGTTGCAAGG	61.620	63.158	0.00	0.00	0.00	3.61
88	89	1.228245	GGCACTCTGGTTGCAAGGA	60.228	57.895	0.00	0.00	0.00	3.36
89	90	1.239968	GGCACTCTGGTTGCAAGGAG	61.240	60.000	17.22	17.22	0.00	3.69
90	91	1.239968	GCACTCTGGTTGCAAGGAGG	61.240	60.000	20.67	13.75	0.00	4.30
91	92	0.109342	CACTCTGGTTGCAAGGAGGT	59.891	55.000	20.67	9.49	0.00	3.85
92	93	1.347707	CACTCTGGTTGCAAGGAGGTA	59.652	52.381	20.67	0.00	0.00	3.08
93	94	1.348036	ACTCTGGTTGCAAGGAGGTAC	59.652	52.381	20.67	2.19	0.00	3.34
94	95	0.320374	TCTGGTTGCAAGGAGGTACG	59.680	55.000	0.00	0.00	0.00	3.67
95	96	0.673644	CTGGTTGCAAGGAGGTACGG	60.674	60.000	0.00	0.00	0.00	4.02
96	97	1.122632	TGGTTGCAAGGAGGTACGGA	61.123	55.000	0.00	0.00	0.00	4.69
97	98	0.252197	GGTTGCAAGGAGGTACGGAT	59.748	55.000	0.00	0.00	0.00	4.18
98	99	1.369625	GTTGCAAGGAGGTACGGATG	58.630	55.000	0.00	0.00	0.00	3.51
99	100	1.066430	GTTGCAAGGAGGTACGGATGA	60.066	52.381	0.00	0.00	0.00	2.92
100	101	0.535335	TGCAAGGAGGTACGGATGAC	59.465	55.000	0.00	0.00	0.00	3.06
101	102	0.179081	GCAAGGAGGTACGGATGACC	60.179	60.000	0.00	0.00	37.22	4.02
122	123	7.604714	GACCGTTGTCAAATTTTCTAAGAAC	57.395	36.000	0.00	0.00	41.37	3.01
123	124	7.090953	ACCGTTGTCAAATTTTCTAAGAACA	57.909	32.000	0.00	0.00	0.00	3.18
124	125	7.540299	ACCGTTGTCAAATTTTCTAAGAACAA	58.460	30.769	0.00	0.00	0.00	2.83
125	126	8.194769	ACCGTTGTCAAATTTTCTAAGAACAAT	58.805	29.630	0.00	0.00	0.00	2.71
126	127	8.479280	CCGTTGTCAAATTTTCTAAGAACAATG	58.521	33.333	0.00	0.00	0.00	2.82
127	128	9.232082	CGTTGTCAAATTTTCTAAGAACAATGA	57.768	29.630	0.00	0.00	0.00	2.57
132	133	9.611284	TCAAATTTTCTAAGAACAATGATCACG	57.389	29.630	0.00	0.00	0.00	4.35
133	134	9.398170	CAAATTTTCTAAGAACAATGATCACGT	57.602	29.630	0.00	0.00	0.00	4.49
134	135	8.955061	AATTTTCTAAGAACAATGATCACGTG	57.045	30.769	9.94	9.94	0.00	4.49
135	136	7.490962	TTTTCTAAGAACAATGATCACGTGT	57.509	32.000	16.51	2.37	0.00	4.49
136	137	7.490962	TTTCTAAGAACAATGATCACGTGTT	57.509	32.000	20.98	20.98	0.00	3.32
137	138	6.706055	TCTAAGAACAATGATCACGTGTTC	57.294	37.500	29.85	29.85	39.12	3.18
138	139	4.389664	AAGAACAATGATCACGTGTTCG	57.610	40.909	30.08	6.92	42.36	3.95
139	140	3.649073	AGAACAATGATCACGTGTTCGA	58.351	40.909	30.08	8.14	42.36	3.71
140	141	4.245660	AGAACAATGATCACGTGTTCGAT	58.754	39.130	30.08	20.08	42.36	3.59
141	142	4.690748	AGAACAATGATCACGTGTTCGATT	59.309	37.500	30.08	19.61	42.36	3.34
142	143	5.179368	AGAACAATGATCACGTGTTCGATTT	59.821	36.000	30.08	19.37	42.36	2.17
143	144	4.711721	ACAATGATCACGTGTTCGATTTG	58.288	39.130	16.51	20.32	40.62	2.32
144	145	4.213270	ACAATGATCACGTGTTCGATTTGT	59.787	37.500	22.98	22.98	40.62	2.83
145	146	4.584029	ATGATCACGTGTTCGATTTGTC	57.416	40.909	16.51	2.34	40.62	3.18
146	147	3.649073	TGATCACGTGTTCGATTTGTCT	58.351	40.909	16.51	0.00	40.62	3.41
147	148	4.800784	TGATCACGTGTTCGATTTGTCTA	58.199	39.130	16.51	0.00	40.62	2.59
148	149	4.857037	TGATCACGTGTTCGATTTGTCTAG	59.143	41.667	16.51	0.00	40.62	2.43
149	150	4.492791	TCACGTGTTCGATTTGTCTAGA	57.507	40.909	16.51	0.00	40.62	2.43
150	151	5.055642	TCACGTGTTCGATTTGTCTAGAT	57.944	39.130	16.51	0.00	40.62	1.98
151	152	6.185852	TCACGTGTTCGATTTGTCTAGATA	57.814	37.500	16.51	0.00	40.62	1.98
152	153	6.025896	TCACGTGTTCGATTTGTCTAGATAC	58.974	40.000	16.51	0.00	40.62	2.24
153	154	5.798434	CACGTGTTCGATTTGTCTAGATACA	59.202	40.000	7.58	0.00	40.62	2.29
154	155	6.472486	CACGTGTTCGATTTGTCTAGATACAT	59.528	38.462	7.58	0.00	40.62	2.29
155	156	7.642586	CACGTGTTCGATTTGTCTAGATACATA	59.357	37.037	7.58	0.00	40.62	2.29
156	157	8.350722	ACGTGTTCGATTTGTCTAGATACATAT	58.649	33.333	0.00	0.00	40.62	1.78
157	158	9.181805	CGTGTTCGATTTGTCTAGATACATATT	57.818	33.333	0.00	0.00	39.71	1.28
159	160	9.692749	TGTTCGATTTGTCTAGATACATATTCC	57.307	33.333	0.00	0.00	0.00	3.01
160	161	9.141400	GTTCGATTTGTCTAGATACATATTCCC	57.859	37.037	0.00	0.00	0.00	3.97
161	162	8.651589	TCGATTTGTCTAGATACATATTCCCT	57.348	34.615	0.00	0.00	0.00	4.20
162	163	8.740906	TCGATTTGTCTAGATACATATTCCCTC	58.259	37.037	0.00	0.00	0.00	4.30
163	164	7.976734	CGATTTGTCTAGATACATATTCCCTCC	59.023	40.741	0.00	0.00	0.00	4.30
164	165	6.835819	TTGTCTAGATACATATTCCCTCCG	57.164	41.667	0.00	0.00	0.00	4.63
165	166	5.888901	TGTCTAGATACATATTCCCTCCGT	58.111	41.667	0.00	0.00	0.00	4.69
166	167	5.944599	TGTCTAGATACATATTCCCTCCGTC	59.055	44.000	0.00	0.00	0.00	4.79
167	168	5.357596	GTCTAGATACATATTCCCTCCGTCC	59.642	48.000	0.00	0.00	0.00	4.79
168	169	3.442076	AGATACATATTCCCTCCGTCCC	58.558	50.000	0.00	0.00	0.00	4.46
169	170	2.779429	TACATATTCCCTCCGTCCCA	57.221	50.000	0.00	0.00	0.00	4.37
170	171	1.887797	ACATATTCCCTCCGTCCCAA	58.112	50.000	0.00	0.00	0.00	4.12
171	172	2.201830	ACATATTCCCTCCGTCCCAAA	58.798	47.619	0.00	0.00	0.00	3.28
172	173	2.578940	ACATATTCCCTCCGTCCCAAAA	59.421	45.455	0.00	0.00	0.00	2.44
173	174	2.793288	TATTCCCTCCGTCCCAAAAC	57.207	50.000	0.00	0.00	0.00	2.43
174	175	0.774908	ATTCCCTCCGTCCCAAAACA	59.225	50.000	0.00	0.00	0.00	2.83
175	176	0.551879	TTCCCTCCGTCCCAAAACAA	59.448	50.000	0.00	0.00	0.00	2.83
176	177	0.551879	TCCCTCCGTCCCAAAACAAA	59.448	50.000	0.00	0.00	0.00	2.83
177	178	1.146152	TCCCTCCGTCCCAAAACAAAT	59.854	47.619	0.00	0.00	0.00	2.32
178	179	1.272212	CCCTCCGTCCCAAAACAAATG	59.728	52.381	0.00	0.00	0.00	2.32
179	180	1.960689	CCTCCGTCCCAAAACAAATGT	59.039	47.619	0.00	0.00	0.00	2.71
180	181	2.030274	CCTCCGTCCCAAAACAAATGTC	60.030	50.000	0.00	0.00	0.00	3.06
181	182	2.884639	CTCCGTCCCAAAACAAATGTCT	59.115	45.455	0.00	0.00	0.00	3.41
182	183	2.882137	TCCGTCCCAAAACAAATGTCTC	59.118	45.455	0.00	0.00	0.00	3.36
183	184	2.621055	CCGTCCCAAAACAAATGTCTCA	59.379	45.455	0.00	0.00	0.00	3.27
184	185	3.255642	CCGTCCCAAAACAAATGTCTCAT	59.744	43.478	0.00	0.00	0.00	2.90
185	186	4.457603	CCGTCCCAAAACAAATGTCTCATA	59.542	41.667	0.00	0.00	0.00	2.15
186	187	5.390613	CGTCCCAAAACAAATGTCTCATAC	58.609	41.667	0.00	0.00	0.00	2.39
187	188	5.049060	CGTCCCAAAACAAATGTCTCATACA	60.049	40.000	0.00	0.00	43.86	2.29
200	201	7.618502	ATGTCTCATACATCCGTATCTAGAC	57.381	40.000	0.00	13.08	46.15	2.59
201	202	6.531021	TGTCTCATACATCCGTATCTAGACA	58.469	40.000	16.19	16.19	45.30	3.41
202	203	6.996282	TGTCTCATACATCCGTATCTAGACAA	59.004	38.462	17.08	7.81	44.96	3.18
203	204	7.173390	TGTCTCATACATCCGTATCTAGACAAG	59.827	40.741	17.08	0.00	44.96	3.16
204	205	7.173562	GTCTCATACATCCGTATCTAGACAAGT	59.826	40.741	14.19	0.00	41.96	3.16
205	206	7.388224	TCTCATACATCCGTATCTAGACAAGTC	59.612	40.741	0.00	0.00	36.11	3.01
206	207	7.225011	TCATACATCCGTATCTAGACAAGTCT	58.775	38.462	7.96	7.96	38.70	3.24
207	208	8.373220	TCATACATCCGTATCTAGACAAGTCTA	58.627	37.037	9.40	9.40	37.39	2.59
208	209	9.000486	CATACATCCGTATCTAGACAAGTCTAA	58.000	37.037	10.81	3.74	37.68	2.10
209	210	7.876936	ACATCCGTATCTAGACAAGTCTAAA	57.123	36.000	10.81	0.00	41.22	1.85
210	211	8.289939	ACATCCGTATCTAGACAAGTCTAAAA	57.710	34.615	10.81	3.56	41.22	1.52
211	212	8.915036	ACATCCGTATCTAGACAAGTCTAAAAT	58.085	33.333	10.81	9.64	41.22	1.82
237	238	8.840833	AAGAATTTTAAGACTGAGGAAGAGAC	57.159	34.615	0.00	0.00	0.00	3.36
238	239	8.201242	AGAATTTTAAGACTGAGGAAGAGACT	57.799	34.615	0.00	0.00	0.00	3.24
239	240	8.655901	AGAATTTTAAGACTGAGGAAGAGACTT	58.344	33.333	0.00	0.00	0.00	3.01
240	241	9.278978	GAATTTTAAGACTGAGGAAGAGACTTT	57.721	33.333	0.00	0.00	0.00	2.66
241	242	9.634021	AATTTTAAGACTGAGGAAGAGACTTTT	57.366	29.630	0.00	0.00	0.00	2.27
242	243	9.634021	ATTTTAAGACTGAGGAAGAGACTTTTT	57.366	29.630	0.00	0.00	0.00	1.94
261	262	4.386867	TTTTTGCGGGTGTTGTATGAAA	57.613	36.364	0.00	0.00	0.00	2.69
262	263	3.634568	TTTGCGGGTGTTGTATGAAAG	57.365	42.857	0.00	0.00	0.00	2.62
263	264	2.264005	TGCGGGTGTTGTATGAAAGT	57.736	45.000	0.00	0.00	0.00	2.66
264	265	2.577700	TGCGGGTGTTGTATGAAAGTT	58.422	42.857	0.00	0.00	0.00	2.66
265	266	2.292016	TGCGGGTGTTGTATGAAAGTTG	59.708	45.455	0.00	0.00	0.00	3.16
266	267	2.550606	GCGGGTGTTGTATGAAAGTTGA	59.449	45.455	0.00	0.00	0.00	3.18
267	268	3.364964	GCGGGTGTTGTATGAAAGTTGAG	60.365	47.826	0.00	0.00	0.00	3.02
268	269	4.062293	CGGGTGTTGTATGAAAGTTGAGA	58.938	43.478	0.00	0.00	0.00	3.27
269	270	4.084013	CGGGTGTTGTATGAAAGTTGAGAC	60.084	45.833	0.00	0.00	0.00	3.36
270	271	4.819630	GGGTGTTGTATGAAAGTTGAGACA	59.180	41.667	0.00	0.00	0.00	3.41
271	272	5.277828	GGGTGTTGTATGAAAGTTGAGACAC	60.278	44.000	0.00	0.00	35.41	3.67
272	273	5.527582	GGTGTTGTATGAAAGTTGAGACACT	59.472	40.000	0.00	0.00	36.17	3.55
273	274	6.038271	GGTGTTGTATGAAAGTTGAGACACTT	59.962	38.462	0.00	0.00	38.74	3.16
274	275	7.225931	GGTGTTGTATGAAAGTTGAGACACTTA	59.774	37.037	0.00	0.00	35.87	2.24
275	276	8.774586	GTGTTGTATGAAAGTTGAGACACTTAT	58.225	33.333	0.00	0.00	35.87	1.73
276	277	9.337396	TGTTGTATGAAAGTTGAGACACTTATT	57.663	29.630	0.00	0.00	35.87	1.40
287	288	9.931210	AGTTGAGACACTTATTTTAAAACGAAG	57.069	29.630	17.13	17.13	0.00	3.79
288	289	9.166126	GTTGAGACACTTATTTTAAAACGAAGG	57.834	33.333	20.47	14.53	0.00	3.46
289	290	8.665643	TGAGACACTTATTTTAAAACGAAGGA	57.334	30.769	20.47	0.00	0.00	3.36
290	291	9.111613	TGAGACACTTATTTTAAAACGAAGGAA	57.888	29.630	20.47	4.33	0.00	3.36
291	292	9.595357	GAGACACTTATTTTAAAACGAAGGAAG	57.405	33.333	20.47	14.73	0.00	3.46
292	293	9.117183	AGACACTTATTTTAAAACGAAGGAAGT	57.883	29.630	20.47	16.69	0.00	3.01
407	408	8.788325	AACAGGTAATTTATTGTCTGTACTCC	57.212	34.615	10.63	0.00	35.16	3.85
408	409	8.147244	ACAGGTAATTTATTGTCTGTACTCCT	57.853	34.615	9.31	0.00	34.78	3.69
409	410	8.603304	ACAGGTAATTTATTGTCTGTACTCCTT	58.397	33.333	9.31	0.00	34.78	3.36
410	411	9.449719	CAGGTAATTTATTGTCTGTACTCCTTT	57.550	33.333	0.00	0.00	0.00	3.11
411	412	9.668497	AGGTAATTTATTGTCTGTACTCCTTTC	57.332	33.333	0.00	0.00	0.00	2.62
412	413	8.601476	GGTAATTTATTGTCTGTACTCCTTTCG	58.399	37.037	0.00	0.00	0.00	3.46
413	414	9.148104	GTAATTTATTGTCTGTACTCCTTTCGT	57.852	33.333	0.00	0.00	0.00	3.85
415	416	9.715121	AATTTATTGTCTGTACTCCTTTCGTAA	57.285	29.630	0.00	0.00	0.00	3.18
416	417	9.715121	ATTTATTGTCTGTACTCCTTTCGTAAA	57.285	29.630	0.00	0.00	0.00	2.01
417	418	8.524870	TTATTGTCTGTACTCCTTTCGTAAAC	57.475	34.615	0.00	0.00	0.00	2.01
418	419	5.779529	TGTCTGTACTCCTTTCGTAAACT	57.220	39.130	0.00	0.00	0.00	2.66
419	420	6.882610	TGTCTGTACTCCTTTCGTAAACTA	57.117	37.500	0.00	0.00	0.00	2.24
420	421	7.275888	TGTCTGTACTCCTTTCGTAAACTAA	57.724	36.000	0.00	0.00	0.00	2.24
421	422	7.889469	TGTCTGTACTCCTTTCGTAAACTAAT	58.111	34.615	0.00	0.00	0.00	1.73
422	423	9.013229	TGTCTGTACTCCTTTCGTAAACTAATA	57.987	33.333	0.00	0.00	0.00	0.98
431	432	9.086336	TCCTTTCGTAAACTAATATACAAACGG	57.914	33.333	0.00	0.00	0.00	4.44
432	433	9.086336	CCTTTCGTAAACTAATATACAAACGGA	57.914	33.333	0.00	0.00	0.00	4.69
446	447	9.909644	ATATACAAACGGAGTATGTATCTCAAC	57.090	33.333	1.29	0.00	45.00	3.18
447	448	5.100259	ACAAACGGAGTATGTATCTCAACG	58.900	41.667	0.00	0.00	45.00	4.10
448	449	5.106038	ACAAACGGAGTATGTATCTCAACGA	60.106	40.000	0.00	0.00	45.00	3.85
449	450	5.571784	AACGGAGTATGTATCTCAACGAA	57.428	39.130	0.00	0.00	45.00	3.85
450	451	5.769484	ACGGAGTATGTATCTCAACGAAT	57.231	39.130	0.00	0.00	41.94	3.34
451	452	5.520632	ACGGAGTATGTATCTCAACGAATG	58.479	41.667	0.00	0.00	41.94	2.67
452	453	5.067413	ACGGAGTATGTATCTCAACGAATGT	59.933	40.000	0.00	0.00	41.94	2.71
453	454	5.399596	CGGAGTATGTATCTCAACGAATGTG	59.600	44.000	0.00	0.00	34.04	3.21
454	455	6.504398	GGAGTATGTATCTCAACGAATGTGA	58.496	40.000	0.00	0.00	36.10	3.58
455	456	6.638873	GGAGTATGTATCTCAACGAATGTGAG	59.361	42.308	0.00	0.00	35.20	3.51
456	457	7.334844	AGTATGTATCTCAACGAATGTGAGA	57.665	36.000	6.59	6.59	42.06	3.27
457	458	7.197017	AGTATGTATCTCAACGAATGTGAGAC	58.803	38.462	6.29	12.51	41.69	3.36
458	459	5.385509	TGTATCTCAACGAATGTGAGACA	57.614	39.130	15.80	15.80	45.98	3.41
459	460	5.778862	TGTATCTCAACGAATGTGAGACAA	58.221	37.500	16.75	7.48	45.50	3.18
460	461	5.863935	TGTATCTCAACGAATGTGAGACAAG	59.136	40.000	16.75	0.00	45.50	3.16
461	462	4.322080	TCTCAACGAATGTGAGACAAGT	57.678	40.909	0.04	0.00	34.21	3.16
462	463	5.447624	TCTCAACGAATGTGAGACAAGTA	57.552	39.130	0.04	0.00	34.21	2.24
463	464	5.838529	TCTCAACGAATGTGAGACAAGTAA	58.161	37.500	0.04	0.00	34.21	2.24
464	465	6.455647	TCTCAACGAATGTGAGACAAGTAAT	58.544	36.000	0.04	0.00	34.21	1.89
465	466	6.929049	TCTCAACGAATGTGAGACAAGTAATT	59.071	34.615	0.04	0.00	34.21	1.40
466	467	7.441157	TCTCAACGAATGTGAGACAAGTAATTT	59.559	33.333	0.04	0.00	34.21	1.82
467	468	7.351981	TCAACGAATGTGAGACAAGTAATTTG	58.648	34.615	0.00	0.00	42.68	2.32
468	469	6.241207	ACGAATGTGAGACAAGTAATTTGG	57.759	37.500	0.00	0.00	41.25	3.28
469	470	5.181245	ACGAATGTGAGACAAGTAATTTGGG	59.819	40.000	0.00	0.00	41.25	4.12
470	471	5.411361	CGAATGTGAGACAAGTAATTTGGGA	59.589	40.000	0.00	0.00	41.25	4.37
471	472	6.575162	AATGTGAGACAAGTAATTTGGGAC	57.425	37.500	0.00	0.00	41.25	4.46
472	473	4.394729	TGTGAGACAAGTAATTTGGGACC	58.605	43.478	0.00	0.00	41.25	4.46
473	474	3.435671	GTGAGACAAGTAATTTGGGACCG	59.564	47.826	0.00	0.00	41.25	4.79
474	475	3.325425	TGAGACAAGTAATTTGGGACCGA	59.675	43.478	0.00	0.00	41.25	4.69
475	476	3.933332	GAGACAAGTAATTTGGGACCGAG	59.067	47.826	0.00	0.00	41.25	4.63
476	477	3.007635	GACAAGTAATTTGGGACCGAGG	58.992	50.000	0.00	0.00	41.25	4.63
477	478	2.374170	ACAAGTAATTTGGGACCGAGGT	59.626	45.455	0.00	0.00	41.25	3.85
478	479	3.583966	ACAAGTAATTTGGGACCGAGGTA	59.416	43.478	0.00	0.00	41.25	3.08
479	480	4.041938	ACAAGTAATTTGGGACCGAGGTAA	59.958	41.667	0.00	0.00	41.25	2.85
480	481	5.190677	CAAGTAATTTGGGACCGAGGTAAT	58.809	41.667	0.00	0.00	32.95	1.89
481	482	6.070078	ACAAGTAATTTGGGACCGAGGTAATA	60.070	38.462	0.00	0.00	41.25	0.98
482	483	5.922053	AGTAATTTGGGACCGAGGTAATAC	58.078	41.667	0.00	0.00	0.00	1.89
483	484	4.847990	AATTTGGGACCGAGGTAATACA	57.152	40.909	0.00	0.00	0.00	2.29
484	485	4.847990	ATTTGGGACCGAGGTAATACAA	57.152	40.909	0.00	0.00	0.00	2.41
485	486	4.847990	TTTGGGACCGAGGTAATACAAT	57.152	40.909	0.00	0.00	0.00	2.71
486	487	4.411256	TTGGGACCGAGGTAATACAATC	57.589	45.455	0.00	0.00	0.00	2.67
487	488	3.649843	TGGGACCGAGGTAATACAATCT	58.350	45.455	0.00	0.00	0.00	2.40
488	489	4.035112	TGGGACCGAGGTAATACAATCTT	58.965	43.478	0.00	0.00	0.00	2.40
489	490	4.100498	TGGGACCGAGGTAATACAATCTTC	59.900	45.833	0.00	0.00	0.00	2.87
490	491	4.502777	GGGACCGAGGTAATACAATCTTCC	60.503	50.000	0.00	0.00	0.00	3.46
491	492	4.344390	GGACCGAGGTAATACAATCTTCCT	59.656	45.833	0.00	0.00	0.00	3.36
492	493	5.163332	GGACCGAGGTAATACAATCTTCCTT	60.163	44.000	0.00	0.00	0.00	3.36
493	494	5.915175	ACCGAGGTAATACAATCTTCCTTC	58.085	41.667	0.00	0.00	0.00	3.46
494	495	5.163332	ACCGAGGTAATACAATCTTCCTTCC	60.163	44.000	0.00	0.00	0.00	3.46
495	496	5.163343	CCGAGGTAATACAATCTTCCTTCCA	60.163	44.000	0.00	0.00	0.00	3.53
496	497	5.753921	CGAGGTAATACAATCTTCCTTCCAC	59.246	44.000	0.00	0.00	0.00	4.02
497	498	6.407074	CGAGGTAATACAATCTTCCTTCCACT	60.407	42.308	0.00	0.00	0.00	4.00
498	499	6.890293	AGGTAATACAATCTTCCTTCCACTC	58.110	40.000	0.00	0.00	0.00	3.51
499	500	6.674419	AGGTAATACAATCTTCCTTCCACTCT	59.326	38.462	0.00	0.00	0.00	3.24
500	501	7.182930	AGGTAATACAATCTTCCTTCCACTCTT	59.817	37.037	0.00	0.00	0.00	2.85
501	502	7.829706	GGTAATACAATCTTCCTTCCACTCTTT	59.170	37.037	0.00	0.00	0.00	2.52
502	503	9.886132	GTAATACAATCTTCCTTCCACTCTTTA	57.114	33.333	0.00	0.00	0.00	1.85
504	505	9.807921	AATACAATCTTCCTTCCACTCTTTAAA	57.192	29.630	0.00	0.00	0.00	1.52
505	506	9.807921	ATACAATCTTCCTTCCACTCTTTAAAA	57.192	29.630	0.00	0.00	0.00	1.52
506	507	8.533569	ACAATCTTCCTTCCACTCTTTAAAAA	57.466	30.769	0.00	0.00	0.00	1.94
507	508	8.633561	ACAATCTTCCTTCCACTCTTTAAAAAG	58.366	33.333	0.00	0.00	37.36	2.27
508	509	7.767250	ATCTTCCTTCCACTCTTTAAAAAGG	57.233	36.000	7.50	7.50	36.67	3.11
509	510	6.669631	TCTTCCTTCCACTCTTTAAAAAGGT	58.330	36.000	11.89	0.00	36.67	3.50
510	511	7.123383	TCTTCCTTCCACTCTTTAAAAAGGTT	58.877	34.615	11.89	0.00	36.67	3.50
511	512	6.709018	TCCTTCCACTCTTTAAAAAGGTTG	57.291	37.500	11.89	1.16	36.67	3.77
512	513	6.192044	TCCTTCCACTCTTTAAAAAGGTTGT	58.808	36.000	11.89	0.00	36.67	3.32
513	514	7.348033	TCCTTCCACTCTTTAAAAAGGTTGTA	58.652	34.615	11.89	0.00	36.67	2.41
514	515	7.501225	TCCTTCCACTCTTTAAAAAGGTTGTAG	59.499	37.037	11.89	0.00	36.67	2.74
515	516	7.501225	CCTTCCACTCTTTAAAAAGGTTGTAGA	59.499	37.037	6.09	0.00	36.67	2.59
516	517	8.990163	TTCCACTCTTTAAAAAGGTTGTAGAT	57.010	30.769	2.77	0.00	36.67	1.98
517	518	8.990163	TCCACTCTTTAAAAAGGTTGTAGATT	57.010	30.769	2.77	0.00	36.67	2.40
530	531	7.807977	AGGTTGTAGATTAAACATGCTATGG	57.192	36.000	0.00	0.00	33.60	2.74
574	575	2.598099	TCGCTCACACGTACCCCA	60.598	61.111	0.00	0.00	0.00	4.96
579	580	2.351447	CGCTCACACGTACCCCATATAG	60.351	54.545	0.00	0.00	0.00	1.31
581	582	3.510360	GCTCACACGTACCCCATATAGAT	59.490	47.826	0.00	0.00	0.00	1.98
582	583	4.618460	GCTCACACGTACCCCATATAGATG	60.618	50.000	0.00	0.00	0.00	2.90
595	596	6.323203	CCATATAGATGGCAAAGGAAAGTG	57.677	41.667	2.85	0.00	46.30	3.16
596	597	5.829924	CCATATAGATGGCAAAGGAAAGTGT	59.170	40.000	2.85	0.00	46.30	3.55
597	598	6.238842	CCATATAGATGGCAAAGGAAAGTGTG	60.239	42.308	2.85	0.00	46.30	3.82
598	599	1.615392	AGATGGCAAAGGAAAGTGTGC	59.385	47.619	0.00	0.00	36.24	4.57
600	601	1.007387	GGCAAAGGAAAGTGTGCCG	60.007	57.895	0.00	0.00	46.48	5.69
601	602	1.733526	GCAAAGGAAAGTGTGCCGT	59.266	52.632	0.00	0.00	0.00	5.68
602	603	0.594796	GCAAAGGAAAGTGTGCCGTG	60.595	55.000	0.00	0.00	0.00	4.94
603	604	0.738389	CAAAGGAAAGTGTGCCGTGT	59.262	50.000	0.00	0.00	0.00	4.49
604	605	0.738389	AAAGGAAAGTGTGCCGTGTG	59.262	50.000	0.00	0.00	0.00	3.82
605	606	0.393808	AAGGAAAGTGTGCCGTGTGT	60.394	50.000	0.00	0.00	0.00	3.72
606	607	1.095228	AGGAAAGTGTGCCGTGTGTG	61.095	55.000	0.00	0.00	0.00	3.82
607	608	1.298339	GAAAGTGTGCCGTGTGTGC	60.298	57.895	0.00	0.00	0.00	4.57
608	609	2.662091	GAAAGTGTGCCGTGTGTGCC	62.662	60.000	0.00	0.00	0.00	5.01
640	641	3.187227	GTGTGATTCCGCAGCCTATTATG	59.813	47.826	0.00	0.00	32.80	1.90
655	656	5.507315	GCCTATTATGAACCCATTTTCCACG	60.507	44.000	0.00	0.00	34.31	4.94
670	671	2.147958	TCCACGGGAAAAATCGTTGAG	58.852	47.619	0.00	0.00	37.53	3.02
695	696	3.097877	TGAAACGATCAGATCCATCCG	57.902	47.619	4.73	0.00	33.04	4.18
822	855	0.971959	ATACGCCACCACCTACCGAA	60.972	55.000	0.00	0.00	0.00	4.30
857	890	1.770658	TCATCACCAGTGATCCATCCC	59.229	52.381	10.32	0.00	46.57	3.85
923	963	1.809209	GCCTTCTCTCGCTGAGCAC	60.809	63.158	4.88	0.00	42.38	4.40
928	975	0.037882	TCTCTCGCTGAGCACTTTGG	60.038	55.000	4.88	0.00	42.38	3.28
935	982	1.135859	GCTGAGCACTTTGGTTGATCG	60.136	52.381	0.00	0.00	0.00	3.69
969	1017	4.683432	GAGACTGGCTCGCTGTTT	57.317	55.556	0.00	0.00	33.17	2.83
970	1018	3.814577	GAGACTGGCTCGCTGTTTA	57.185	52.632	0.00	0.00	33.17	2.01
971	1019	2.080286	GAGACTGGCTCGCTGTTTAA	57.920	50.000	0.00	0.00	33.17	1.52
1083	1131	1.135527	GGGAACATCGTCGTGTCCATA	59.864	52.381	0.00	0.00	0.00	2.74
1205	1253	2.045524	CATGCTCCTCCTGGTCAGTAT	58.954	52.381	0.00	0.00	34.23	2.12
1210	1258	3.632333	CTCCTCCTGGTCAGTATACACA	58.368	50.000	5.50	0.00	34.23	3.72
1211	1259	3.362706	TCCTCCTGGTCAGTATACACAC	58.637	50.000	5.50	0.70	34.23	3.82
1212	1260	3.011369	TCCTCCTGGTCAGTATACACACT	59.989	47.826	5.50	0.00	34.23	3.55
1297	1365	7.493367	ACAAGCTTCACTCCATCTTAGTATAC	58.507	38.462	0.00	0.00	0.00	1.47
1298	1366	6.658188	AGCTTCACTCCATCTTAGTATACC	57.342	41.667	0.00	0.00	0.00	2.73
1299	1367	5.241949	AGCTTCACTCCATCTTAGTATACCG	59.758	44.000	0.00	0.00	0.00	4.02
1300	1368	5.009811	GCTTCACTCCATCTTAGTATACCGT	59.990	44.000	0.00	0.00	0.00	4.83
1301	1369	6.387041	TTCACTCCATCTTAGTATACCGTG	57.613	41.667	0.00	0.00	0.00	4.94
1302	1370	5.687780	TCACTCCATCTTAGTATACCGTGA	58.312	41.667	0.00	0.00	0.00	4.35
1303	1371	5.763698	TCACTCCATCTTAGTATACCGTGAG	59.236	44.000	0.00	0.00	0.00	3.51
1304	1372	4.519730	ACTCCATCTTAGTATACCGTGAGC	59.480	45.833	0.00	0.00	0.00	4.26
1305	1373	4.726583	TCCATCTTAGTATACCGTGAGCT	58.273	43.478	0.00	0.00	0.00	4.09
1359	1430	7.776107	TCAGTCGATTAGTCTCATCAAGATTT	58.224	34.615	0.00	0.00	36.11	2.17
1372	1443	3.063485	TCAAGATTTGTCACGCATTCGA	58.937	40.909	0.00	0.00	39.41	3.71
1699	1773	4.456253	GCGCTCTCGTTCGTCCGA	62.456	66.667	0.00	0.00	38.14	4.55
2098	2172	2.896801	GAAGGTGGTGCTGTGCGTG	61.897	63.158	0.00	0.00	0.00	5.34
2360	2434	4.069232	CGGCGCTCTTCCACCTCA	62.069	66.667	7.64	0.00	0.00	3.86
2476	2550	3.697045	CGGTCTTGGCACCCATTTATAAA	59.303	43.478	0.00	0.00	31.53	1.40
2477	2551	4.340950	CGGTCTTGGCACCCATTTATAAAT	59.659	41.667	4.81	4.81	31.53	1.40
2478	2552	5.163457	CGGTCTTGGCACCCATTTATAAATT	60.163	40.000	8.01	0.00	31.53	1.82
2479	2553	6.039941	CGGTCTTGGCACCCATTTATAAATTA	59.960	38.462	8.01	0.00	31.53	1.40
2480	2554	7.255801	CGGTCTTGGCACCCATTTATAAATTAT	60.256	37.037	8.01	0.00	31.53	1.28
2481	2555	9.084533	GGTCTTGGCACCCATTTATAAATTATA	57.915	33.333	8.01	0.00	31.53	0.98
2510	2584	8.055279	AGAAAATGGTCATCAATTTCGTACAT	57.945	30.769	0.00	0.00	45.28	2.29
2516	2594	6.315144	TGGTCATCAATTTCGTACATTACAGG	59.685	38.462	0.00	0.00	0.00	4.00
2521	2603	5.645929	TCAATTTCGTACATTACAGGCACAT	59.354	36.000	0.00	0.00	0.00	3.21
2522	2604	6.819146	TCAATTTCGTACATTACAGGCACATA	59.181	34.615	0.00	0.00	0.00	2.29
2554	2636	9.699410	AGATTCAATTACCATCCAAATTAGTCA	57.301	29.630	0.00	0.00	0.00	3.41
2557	2639	8.642935	TCAATTACCATCCAAATTAGTCAACA	57.357	30.769	0.00	0.00	0.00	3.33
2652	2850	5.543507	TTTTTGCCTACACCATCATGTTT	57.456	34.783	0.00	0.00	33.85	2.83
2653	2851	5.543507	TTTTGCCTACACCATCATGTTTT	57.456	34.783	0.00	0.00	33.85	2.43
2654	2852	5.543507	TTTGCCTACACCATCATGTTTTT	57.456	34.783	0.00	0.00	33.85	1.94
2675	2873	3.374220	TTAACAATCACTCGGTCGTGT	57.626	42.857	0.00	0.00	36.33	4.49
2677	2875	0.944311	ACAATCACTCGGTCGTGTGC	60.944	55.000	17.29	0.00	38.87	4.57
2678	2876	0.667487	CAATCACTCGGTCGTGTGCT	60.667	55.000	17.29	8.05	38.87	4.40
2680	2878	0.033504	ATCACTCGGTCGTGTGCTTT	59.966	50.000	17.29	5.57	38.87	3.51
2681	2879	0.874175	TCACTCGGTCGTGTGCTTTG	60.874	55.000	17.29	0.00	38.87	2.77
2730	3045	4.872124	TCTTCGTCATTGTCATTGATCCAG	59.128	41.667	0.98	0.00	0.00	3.86
2763	4268	1.974265	TGAATTGGCACCACGAAAGA	58.026	45.000	0.00	0.00	0.00	2.52
2778	4283	3.118371	ACGAAAGAGGTTTCTCCACAAGT	60.118	43.478	0.00	0.00	40.10	3.16
2795	4300	3.207778	CAAGTTTCGTGGAAAGGGTGTA	58.792	45.455	0.00	0.00	31.87	2.90
2799	4304	3.773418	TTCGTGGAAAGGGTGTAATGA	57.227	42.857	0.00	0.00	0.00	2.57
2897	4405	2.104963	ACTGAGAGGTTTTGGTGAGGTC	59.895	50.000	0.00	0.00	0.00	3.85
2898	4406	2.104792	CTGAGAGGTTTTGGTGAGGTCA	59.895	50.000	0.00	0.00	0.00	4.02
2899	4407	2.158813	TGAGAGGTTTTGGTGAGGTCAC	60.159	50.000	1.17	1.17	45.72	3.67
2900	4408	2.104963	GAGAGGTTTTGGTGAGGTCACT	59.895	50.000	9.90	0.00	45.73	3.41
2913	4421	0.460311	GGTCACTCACCGGTCTATGG	59.540	60.000	2.59	0.00	34.56	2.74
2941	4449	8.636213	CCAAATTTTATAAGAGCTCCATCATGT	58.364	33.333	10.93	0.00	0.00	3.21
2961	4469	3.270877	GTCCATTCGATGCAACTACCTT	58.729	45.455	0.00	0.00	0.00	3.50
2964	4472	5.527582	GTCCATTCGATGCAACTACCTTAAT	59.472	40.000	0.00	0.00	0.00	1.40
2968	4476	7.415095	CCATTCGATGCAACTACCTTAATTTGA	60.415	37.037	0.00	0.00	0.00	2.69
2995	4503	2.629656	CCTCAAAGGTTGCCGGCAG	61.630	63.158	30.75	17.26	0.00	4.85
3078	4586	5.463051	AGGTGGATCTTCAATTCCTTGAT	57.537	39.130	0.00	0.00	40.95	2.57
3090	4598	5.879777	TCAATTCCTTGATGATAAAGTCGCA	59.120	36.000	0.00	0.00	36.46	5.10
3121	4629	2.031420	GTCACTTACGAAGGCCAAAACC	60.031	50.000	5.01	0.00	0.00	3.27
3173	4681	2.571216	CCGTCGTCACCTCCCAAGT	61.571	63.158	0.00	0.00	0.00	3.16
3174	4682	1.246056	CCGTCGTCACCTCCCAAGTA	61.246	60.000	0.00	0.00	0.00	2.24
3177	4685	1.067776	GTCGTCACCTCCCAAGTAGTG	60.068	57.143	0.00	0.00	0.00	2.74
3217	4726	7.331193	ACTTGTTATTTCGCCAAGTACTCTAAG	59.669	37.037	0.00	0.00	45.06	2.18
3224	4733	6.276832	TCGCCAAGTACTCTAAGTAATGTT	57.723	37.500	0.00	0.00	31.62	2.71
3245	4754	9.679661	AATGTTAACAAGTTTGAAAGGGATTTT	57.320	25.926	13.23	0.00	0.00	1.82
3310	4819	2.882137	TGAATTGGAAGGTCGTTTGTCC	59.118	45.455	0.00	0.00	0.00	4.02
3357	4866	3.246936	GGTACTCAACACCGACAAGTTTC	59.753	47.826	0.00	0.00	0.00	2.78
3358	4867	2.285977	ACTCAACACCGACAAGTTTCC	58.714	47.619	0.00	0.00	0.00	3.13
3359	4868	2.093128	ACTCAACACCGACAAGTTTCCT	60.093	45.455	0.00	0.00	0.00	3.36
3391	4903	2.819608	GCTTGAAATGGCCTTGTGAGTA	59.180	45.455	3.32	0.00	0.00	2.59
3418	4930	0.108520	CCAAGCATGATGTGGGTTGC	60.109	55.000	0.00	0.00	40.24	4.17
3423	4935	1.647346	CATGATGTGGGTTGCAATGC	58.353	50.000	0.59	0.00	0.00	3.56
3424	4936	1.066787	CATGATGTGGGTTGCAATGCA	60.067	47.619	2.72	2.72	36.47	3.96
3425	4937	1.268066	TGATGTGGGTTGCAATGCAT	58.732	45.000	9.39	5.11	38.76	3.96
3426	4938	1.205179	TGATGTGGGTTGCAATGCATC	59.795	47.619	9.39	8.42	38.76	3.91
3427	4939	1.205179	GATGTGGGTTGCAATGCATCA	59.795	47.619	9.39	5.54	38.76	3.07
3428	4940	1.268066	TGTGGGTTGCAATGCATCAT	58.732	45.000	9.39	0.00	38.76	2.45
3429	4941	1.205179	TGTGGGTTGCAATGCATCATC	59.795	47.619	9.39	5.43	38.76	2.92
3430	4942	0.825410	TGGGTTGCAATGCATCATCC	59.175	50.000	9.39	5.38	38.76	3.51
3431	4943	0.825410	GGGTTGCAATGCATCATCCA	59.175	50.000	9.39	0.00	38.76	3.41
3432	4944	1.414919	GGGTTGCAATGCATCATCCAT	59.585	47.619	9.39	0.00	38.76	3.41
3433	4945	2.629137	GGGTTGCAATGCATCATCCATA	59.371	45.455	9.39	0.00	38.76	2.74
3434	4946	3.069872	GGGTTGCAATGCATCATCCATAA	59.930	43.478	9.39	0.00	38.76	1.90
3435	4947	4.443175	GGGTTGCAATGCATCATCCATAAA	60.443	41.667	9.39	0.00	38.76	1.40
3436	4948	5.302360	GGTTGCAATGCATCATCCATAAAT	58.698	37.500	9.39	0.00	38.76	1.40
3437	4949	5.761234	GGTTGCAATGCATCATCCATAAATT	59.239	36.000	9.39	0.00	38.76	1.82
3438	4950	6.293190	GGTTGCAATGCATCATCCATAAATTG	60.293	38.462	9.39	0.00	38.76	2.32
3439	4951	5.301555	TGCAATGCATCATCCATAAATTGG	58.698	37.500	2.72	0.00	39.39	3.16
3440	4952	5.070580	TGCAATGCATCATCCATAAATTGGA	59.929	36.000	2.72	0.00	46.24	3.53
3451	4963	4.311816	CATAAATTGGATGTGGAGCACC	57.688	45.455	0.00	0.00	32.73	5.01
3452	4964	2.610438	AAATTGGATGTGGAGCACCT	57.390	45.000	0.71	0.00	37.04	4.00
3453	4965	2.134789	AATTGGATGTGGAGCACCTC	57.865	50.000	0.71	0.00	37.04	3.85
3454	4966	1.293062	ATTGGATGTGGAGCACCTCT	58.707	50.000	0.71	0.00	37.04	3.69
3455	4967	1.067295	TTGGATGTGGAGCACCTCTT	58.933	50.000	0.71	0.00	37.04	2.85
3456	4968	0.615331	TGGATGTGGAGCACCTCTTC	59.385	55.000	0.71	5.72	37.04	2.87
3457	4969	0.908198	GGATGTGGAGCACCTCTTCT	59.092	55.000	14.60	0.00	35.54	2.85
3458	4970	1.280421	GGATGTGGAGCACCTCTTCTT	59.720	52.381	14.60	0.00	35.54	2.52
3459	4971	2.626840	GATGTGGAGCACCTCTTCTTC	58.373	52.381	0.71	0.00	37.04	2.87
3460	4972	1.722034	TGTGGAGCACCTCTTCTTCT	58.278	50.000	0.71	0.00	37.04	2.85
3461	4973	1.620819	TGTGGAGCACCTCTTCTTCTC	59.379	52.381	0.71	0.00	37.04	2.87
3462	4974	1.899142	GTGGAGCACCTCTTCTTCTCT	59.101	52.381	0.71	0.00	37.04	3.10
3463	4975	2.301583	GTGGAGCACCTCTTCTTCTCTT	59.698	50.000	0.71	0.00	37.04	2.85
3464	4976	2.975489	TGGAGCACCTCTTCTTCTCTTT	59.025	45.455	0.71	0.00	37.04	2.52
3465	4977	3.392616	TGGAGCACCTCTTCTTCTCTTTT	59.607	43.478	0.71	0.00	37.04	2.27
3466	4978	4.593206	TGGAGCACCTCTTCTTCTCTTTTA	59.407	41.667	0.71	0.00	37.04	1.52
3467	4979	5.071788	TGGAGCACCTCTTCTTCTCTTTTAA	59.928	40.000	0.71	0.00	37.04	1.52
3468	4980	5.998363	GGAGCACCTCTTCTTCTCTTTTAAA	59.002	40.000	0.00	0.00	0.00	1.52
3469	4981	6.072948	GGAGCACCTCTTCTTCTCTTTTAAAC	60.073	42.308	0.00	0.00	0.00	2.01
3470	4982	5.765677	AGCACCTCTTCTTCTCTTTTAAACC	59.234	40.000	0.00	0.00	0.00	3.27
3471	4983	5.765677	GCACCTCTTCTTCTCTTTTAAACCT	59.234	40.000	0.00	0.00	0.00	3.50
3472	4984	6.072948	GCACCTCTTCTTCTCTTTTAAACCTC	60.073	42.308	0.00	0.00	0.00	3.85
3473	4985	6.146347	CACCTCTTCTTCTCTTTTAAACCTCG	59.854	42.308	0.00	0.00	0.00	4.63
3474	4986	5.639931	CCTCTTCTTCTCTTTTAAACCTCGG	59.360	44.000	0.00	0.00	0.00	4.63
3475	4987	4.995487	TCTTCTTCTCTTTTAAACCTCGGC	59.005	41.667	0.00	0.00	0.00	5.54
3476	4988	4.345859	TCTTCTCTTTTAAACCTCGGCA	57.654	40.909	0.00	0.00	0.00	5.69
3477	4989	4.315803	TCTTCTCTTTTAAACCTCGGCAG	58.684	43.478	0.00	0.00	0.00	4.85
3478	4990	2.423577	TCTCTTTTAAACCTCGGCAGC	58.576	47.619	0.00	0.00	0.00	5.25
3479	4991	2.038557	TCTCTTTTAAACCTCGGCAGCT	59.961	45.455	0.00	0.00	0.00	4.24
3480	4992	2.814336	CTCTTTTAAACCTCGGCAGCTT	59.186	45.455	0.00	0.00	0.00	3.74
3481	4993	3.219281	TCTTTTAAACCTCGGCAGCTTT	58.781	40.909	0.00	0.00	0.00	3.51
3482	4994	4.391155	TCTTTTAAACCTCGGCAGCTTTA	58.609	39.130	0.00	0.00	0.00	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.965292	TCTGAGTTCTACTAATCCGCG	57.035	47.619	0.00	0.00	0.00	6.46
1	2	7.095982	GCTTTATTCTGAGTTCTACTAATCCGC	60.096	40.741	0.00	0.00	0.00	5.54
2	3	8.138712	AGCTTTATTCTGAGTTCTACTAATCCG	58.861	37.037	0.00	0.00	0.00	4.18
7	8	9.682465	TGACTAGCTTTATTCTGAGTTCTACTA	57.318	33.333	0.00	0.00	0.00	1.82
8	9	8.463607	GTGACTAGCTTTATTCTGAGTTCTACT	58.536	37.037	0.00	0.00	0.00	2.57
9	10	8.463607	AGTGACTAGCTTTATTCTGAGTTCTAC	58.536	37.037	0.00	0.00	0.00	2.59
10	11	8.582657	AGTGACTAGCTTTATTCTGAGTTCTA	57.417	34.615	0.00	0.00	0.00	2.10
11	12	7.475137	AGTGACTAGCTTTATTCTGAGTTCT	57.525	36.000	0.00	0.00	0.00	3.01
12	13	8.463607	ACTAGTGACTAGCTTTATTCTGAGTTC	58.536	37.037	18.99	0.00	37.57	3.01
13	14	8.356000	ACTAGTGACTAGCTTTATTCTGAGTT	57.644	34.615	18.99	0.00	37.57	3.01
14	15	7.948034	ACTAGTGACTAGCTTTATTCTGAGT	57.052	36.000	18.99	0.00	37.57	3.41
15	16	9.944663	CTAACTAGTGACTAGCTTTATTCTGAG	57.055	37.037	18.99	0.00	37.57	3.35
16	17	8.407064	GCTAACTAGTGACTAGCTTTATTCTGA	58.593	37.037	18.99	0.00	37.57	3.27
17	18	7.377397	CGCTAACTAGTGACTAGCTTTATTCTG	59.623	40.741	18.99	4.60	37.57	3.02
18	19	7.419204	CGCTAACTAGTGACTAGCTTTATTCT	58.581	38.462	18.99	0.00	37.57	2.40
19	20	6.637658	CCGCTAACTAGTGACTAGCTTTATTC	59.362	42.308	18.99	6.11	37.57	1.75
20	21	6.505272	CCGCTAACTAGTGACTAGCTTTATT	58.495	40.000	18.99	8.35	37.57	1.40
21	22	5.507650	GCCGCTAACTAGTGACTAGCTTTAT	60.508	44.000	18.99	4.06	37.57	1.40
22	23	4.201990	GCCGCTAACTAGTGACTAGCTTTA	60.202	45.833	18.99	10.30	37.57	1.85
23	24	3.429135	GCCGCTAACTAGTGACTAGCTTT	60.429	47.826	18.99	9.71	37.57	3.51
24	25	2.099427	GCCGCTAACTAGTGACTAGCTT	59.901	50.000	18.99	14.06	37.57	3.74
25	26	1.677052	GCCGCTAACTAGTGACTAGCT	59.323	52.381	18.99	10.07	37.57	3.32
26	27	1.269154	GGCCGCTAACTAGTGACTAGC	60.269	57.143	18.99	13.03	37.57	3.42
27	28	2.299521	AGGCCGCTAACTAGTGACTAG	58.700	52.381	17.61	17.61	39.72	2.57
28	29	2.431954	AGGCCGCTAACTAGTGACTA	57.568	50.000	0.00	0.00	35.92	2.59
29	30	2.431954	TAGGCCGCTAACTAGTGACT	57.568	50.000	0.00	0.00	35.92	3.41
30	31	2.288273	CCATAGGCCGCTAACTAGTGAC	60.288	54.545	0.00	0.00	35.92	3.67
31	32	1.961394	CCATAGGCCGCTAACTAGTGA	59.039	52.381	0.00	0.00	35.92	3.41
32	33	1.000955	CCCATAGGCCGCTAACTAGTG	59.999	57.143	0.00	0.00	0.00	2.74
33	34	1.339097	CCCATAGGCCGCTAACTAGT	58.661	55.000	0.00	0.00	0.00	2.57
52	53	1.445582	CGTGTGAGGGGTACTTCGC	60.446	63.158	0.00	0.00	0.00	4.70
53	54	1.214589	CCGTGTGAGGGGTACTTCG	59.785	63.158	0.00	0.00	0.00	3.79
54	55	1.079336	GCCGTGTGAGGGGTACTTC	60.079	63.158	0.00	0.00	0.00	3.01
55	56	1.839747	TGCCGTGTGAGGGGTACTT	60.840	57.895	0.00	0.00	0.00	2.24
56	57	2.203728	TGCCGTGTGAGGGGTACT	60.204	61.111	0.00	0.00	0.00	2.73
57	58	2.047560	GTGCCGTGTGAGGGGTAC	60.048	66.667	0.00	0.00	0.00	3.34
58	59	2.203728	AGTGCCGTGTGAGGGGTA	60.204	61.111	0.00	0.00	0.00	3.69
59	60	3.626924	GAGTGCCGTGTGAGGGGT	61.627	66.667	0.00	0.00	0.00	4.95
60	61	3.314331	AGAGTGCCGTGTGAGGGG	61.314	66.667	0.00	0.00	0.00	4.79
61	62	2.047844	CAGAGTGCCGTGTGAGGG	60.048	66.667	0.00	0.00	0.00	4.30
62	63	2.047844	CCAGAGTGCCGTGTGAGG	60.048	66.667	0.00	0.00	0.00	3.86
63	64	1.069765	AACCAGAGTGCCGTGTGAG	59.930	57.895	0.00	0.00	0.00	3.51
64	65	1.227527	CAACCAGAGTGCCGTGTGA	60.228	57.895	0.00	0.00	0.00	3.58
65	66	2.896801	GCAACCAGAGTGCCGTGTG	61.897	63.158	0.00	0.00	0.00	3.82
66	67	2.591715	GCAACCAGAGTGCCGTGT	60.592	61.111	0.00	0.00	0.00	4.49
67	68	2.121564	CTTGCAACCAGAGTGCCGTG	62.122	60.000	0.00	0.00	0.00	4.94
68	69	1.893808	CTTGCAACCAGAGTGCCGT	60.894	57.895	0.00	0.00	0.00	5.68
69	70	2.620112	CCTTGCAACCAGAGTGCCG	61.620	63.158	0.00	0.00	0.00	5.69
70	71	1.228245	TCCTTGCAACCAGAGTGCC	60.228	57.895	0.00	0.00	0.00	5.01
71	72	1.239968	CCTCCTTGCAACCAGAGTGC	61.240	60.000	12.85	0.00	0.00	4.40
72	73	0.109342	ACCTCCTTGCAACCAGAGTG	59.891	55.000	12.85	8.46	0.00	3.51
73	74	1.348036	GTACCTCCTTGCAACCAGAGT	59.652	52.381	12.85	7.16	0.00	3.24
74	75	1.673033	CGTACCTCCTTGCAACCAGAG	60.673	57.143	0.00	2.12	0.00	3.35
75	76	0.320374	CGTACCTCCTTGCAACCAGA	59.680	55.000	0.00	0.00	0.00	3.86
76	77	0.673644	CCGTACCTCCTTGCAACCAG	60.674	60.000	0.00	0.00	0.00	4.00
77	78	1.122632	TCCGTACCTCCTTGCAACCA	61.123	55.000	0.00	0.00	0.00	3.67
78	79	0.252197	ATCCGTACCTCCTTGCAACC	59.748	55.000	0.00	0.00	0.00	3.77
79	80	1.066430	TCATCCGTACCTCCTTGCAAC	60.066	52.381	0.00	0.00	0.00	4.17
80	81	1.066430	GTCATCCGTACCTCCTTGCAA	60.066	52.381	0.00	0.00	0.00	4.08
81	82	0.535335	GTCATCCGTACCTCCTTGCA	59.465	55.000	0.00	0.00	0.00	4.08
82	83	0.179081	GGTCATCCGTACCTCCTTGC	60.179	60.000	0.00	0.00	33.97	4.01
98	99	7.190871	TGTTCTTAGAAAATTTGACAACGGTC	58.809	34.615	0.00	0.00	44.57	4.79
99	100	7.090953	TGTTCTTAGAAAATTTGACAACGGT	57.909	32.000	0.00	0.00	0.00	4.83
100	101	7.979115	TTGTTCTTAGAAAATTTGACAACGG	57.021	32.000	0.00	0.00	0.00	4.44
101	102	9.232082	TCATTGTTCTTAGAAAATTTGACAACG	57.768	29.630	0.00	0.00	0.00	4.10
106	107	9.611284	CGTGATCATTGTTCTTAGAAAATTTGA	57.389	29.630	0.00	0.00	0.00	2.69
107	108	9.398170	ACGTGATCATTGTTCTTAGAAAATTTG	57.602	29.630	0.00	0.00	0.00	2.32
108	109	9.398170	CACGTGATCATTGTTCTTAGAAAATTT	57.602	29.630	10.90	0.00	0.00	1.82
109	110	8.567948	ACACGTGATCATTGTTCTTAGAAAATT	58.432	29.630	25.01	0.00	0.00	1.82
110	111	8.099364	ACACGTGATCATTGTTCTTAGAAAAT	57.901	30.769	25.01	0.00	0.00	1.82
111	112	7.490962	ACACGTGATCATTGTTCTTAGAAAA	57.509	32.000	25.01	0.00	0.00	2.29
112	113	7.490962	AACACGTGATCATTGTTCTTAGAAA	57.509	32.000	25.01	0.00	0.00	2.52
113	114	6.128929	CGAACACGTGATCATTGTTCTTAGAA	60.129	38.462	30.76	0.00	44.60	2.10
114	115	5.344933	CGAACACGTGATCATTGTTCTTAGA	59.655	40.000	30.76	0.00	44.60	2.10
115	116	5.344933	TCGAACACGTGATCATTGTTCTTAG	59.655	40.000	30.76	22.53	44.60	2.18
116	117	5.224135	TCGAACACGTGATCATTGTTCTTA	58.776	37.500	30.76	22.72	44.60	2.10
117	118	4.055360	TCGAACACGTGATCATTGTTCTT	58.945	39.130	30.76	15.51	44.60	2.52
118	119	3.649073	TCGAACACGTGATCATTGTTCT	58.351	40.909	30.76	14.09	44.60	3.01
119	120	4.584029	ATCGAACACGTGATCATTGTTC	57.416	40.909	27.63	27.63	43.75	3.18
120	121	5.146460	CAAATCGAACACGTGATCATTGTT	58.854	37.500	25.01	20.05	36.16	2.83
121	122	4.213270	ACAAATCGAACACGTGATCATTGT	59.787	37.500	25.01	24.05	0.00	2.71
122	123	4.711721	ACAAATCGAACACGTGATCATTG	58.288	39.130	25.01	23.47	0.00	2.82
123	124	4.690748	AGACAAATCGAACACGTGATCATT	59.309	37.500	25.01	17.66	0.00	2.57
124	125	4.245660	AGACAAATCGAACACGTGATCAT	58.754	39.130	25.01	12.95	0.00	2.45
125	126	3.649073	AGACAAATCGAACACGTGATCA	58.351	40.909	25.01	11.17	0.00	2.92
126	127	5.093457	TCTAGACAAATCGAACACGTGATC	58.907	41.667	25.01	19.64	0.00	2.92
127	128	5.055642	TCTAGACAAATCGAACACGTGAT	57.944	39.130	25.01	11.26	0.00	3.06
128	129	4.492791	TCTAGACAAATCGAACACGTGA	57.507	40.909	25.01	0.00	0.00	4.35
129	130	5.798434	TGTATCTAGACAAATCGAACACGTG	59.202	40.000	15.48	15.48	0.00	4.49
130	131	5.946298	TGTATCTAGACAAATCGAACACGT	58.054	37.500	0.00	0.00	0.00	4.49
131	132	8.729529	ATATGTATCTAGACAAATCGAACACG	57.270	34.615	0.00	0.00	31.83	4.49
133	134	9.692749	GGAATATGTATCTAGACAAATCGAACA	57.307	33.333	0.00	0.00	31.83	3.18
134	135	9.141400	GGGAATATGTATCTAGACAAATCGAAC	57.859	37.037	0.00	0.00	31.83	3.95
135	136	9.090103	AGGGAATATGTATCTAGACAAATCGAA	57.910	33.333	0.00	0.00	31.83	3.71
136	137	8.651589	AGGGAATATGTATCTAGACAAATCGA	57.348	34.615	0.00	0.00	31.83	3.59
137	138	7.976734	GGAGGGAATATGTATCTAGACAAATCG	59.023	40.741	0.00	0.00	31.83	3.34
138	139	7.976734	CGGAGGGAATATGTATCTAGACAAATC	59.023	40.741	0.00	0.00	31.83	2.17
139	140	7.455008	ACGGAGGGAATATGTATCTAGACAAAT	59.545	37.037	0.00	0.00	31.83	2.32
140	141	6.781014	ACGGAGGGAATATGTATCTAGACAAA	59.219	38.462	0.00	0.00	31.83	2.83
141	142	6.312529	ACGGAGGGAATATGTATCTAGACAA	58.687	40.000	0.00	0.00	31.83	3.18
142	143	5.888901	ACGGAGGGAATATGTATCTAGACA	58.111	41.667	0.00	0.00	0.00	3.41
143	144	5.357596	GGACGGAGGGAATATGTATCTAGAC	59.642	48.000	0.00	0.00	0.00	2.59
144	145	5.507637	GGACGGAGGGAATATGTATCTAGA	58.492	45.833	0.00	0.00	0.00	2.43
145	146	4.645588	GGGACGGAGGGAATATGTATCTAG	59.354	50.000	0.00	0.00	0.00	2.43
146	147	4.044952	TGGGACGGAGGGAATATGTATCTA	59.955	45.833	0.00	0.00	0.00	1.98
147	148	3.181410	TGGGACGGAGGGAATATGTATCT	60.181	47.826	0.00	0.00	0.00	1.98
148	149	3.170717	TGGGACGGAGGGAATATGTATC	58.829	50.000	0.00	0.00	0.00	2.24
149	150	3.269592	TGGGACGGAGGGAATATGTAT	57.730	47.619	0.00	0.00	0.00	2.29
150	151	2.779429	TGGGACGGAGGGAATATGTA	57.221	50.000	0.00	0.00	0.00	2.29
151	152	1.887797	TTGGGACGGAGGGAATATGT	58.112	50.000	0.00	0.00	0.00	2.29
152	153	2.949644	GTTTTGGGACGGAGGGAATATG	59.050	50.000	0.00	0.00	0.00	1.78
153	154	2.578940	TGTTTTGGGACGGAGGGAATAT	59.421	45.455	0.00	0.00	0.00	1.28
154	155	1.986631	TGTTTTGGGACGGAGGGAATA	59.013	47.619	0.00	0.00	0.00	1.75
155	156	0.774908	TGTTTTGGGACGGAGGGAAT	59.225	50.000	0.00	0.00	0.00	3.01
156	157	0.551879	TTGTTTTGGGACGGAGGGAA	59.448	50.000	0.00	0.00	0.00	3.97
157	158	0.551879	TTTGTTTTGGGACGGAGGGA	59.448	50.000	0.00	0.00	0.00	4.20
158	159	1.272212	CATTTGTTTTGGGACGGAGGG	59.728	52.381	0.00	0.00	0.00	4.30
159	160	1.960689	ACATTTGTTTTGGGACGGAGG	59.039	47.619	0.00	0.00	0.00	4.30
160	161	2.884639	AGACATTTGTTTTGGGACGGAG	59.115	45.455	0.00	0.00	0.00	4.63
161	162	2.882137	GAGACATTTGTTTTGGGACGGA	59.118	45.455	0.00	0.00	0.00	4.69
162	163	2.621055	TGAGACATTTGTTTTGGGACGG	59.379	45.455	0.00	0.00	0.00	4.79
163	164	3.980646	TGAGACATTTGTTTTGGGACG	57.019	42.857	0.00	0.00	0.00	4.79
164	165	6.325919	TGTATGAGACATTTGTTTTGGGAC	57.674	37.500	0.00	0.00	31.20	4.46
177	178	6.531021	TGTCTAGATACGGATGTATGAGACA	58.469	40.000	17.45	17.45	46.23	3.41
178	179	7.173562	ACTTGTCTAGATACGGATGTATGAGAC	59.826	40.741	14.40	14.40	43.29	3.36
179	180	7.225011	ACTTGTCTAGATACGGATGTATGAGA	58.775	38.462	0.00	0.00	41.37	3.27
180	181	7.389330	AGACTTGTCTAGATACGGATGTATGAG	59.611	40.741	0.89	0.00	41.37	2.90
181	182	7.225011	AGACTTGTCTAGATACGGATGTATGA	58.775	38.462	0.89	0.00	41.37	2.15
182	183	7.441890	AGACTTGTCTAGATACGGATGTATG	57.558	40.000	0.89	0.00	41.37	2.39
183	184	9.570468	TTTAGACTTGTCTAGATACGGATGTAT	57.430	33.333	9.96	0.00	43.97	2.29
184	185	8.969260	TTTAGACTTGTCTAGATACGGATGTA	57.031	34.615	9.96	0.00	34.45	2.29
185	186	7.876936	TTTAGACTTGTCTAGATACGGATGT	57.123	36.000	9.96	0.00	0.00	3.06
211	212	9.930693	GTCTCTTCCTCAGTCTTAAAATTCTTA	57.069	33.333	0.00	0.00	0.00	2.10
212	213	8.655901	AGTCTCTTCCTCAGTCTTAAAATTCTT	58.344	33.333	0.00	0.00	0.00	2.52
213	214	8.201242	AGTCTCTTCCTCAGTCTTAAAATTCT	57.799	34.615	0.00	0.00	0.00	2.40
214	215	8.840833	AAGTCTCTTCCTCAGTCTTAAAATTC	57.159	34.615	0.00	0.00	0.00	2.17
215	216	9.634021	AAAAGTCTCTTCCTCAGTCTTAAAATT	57.366	29.630	0.00	0.00	0.00	1.82
216	217	9.634021	AAAAAGTCTCTTCCTCAGTCTTAAAAT	57.366	29.630	0.00	0.00	0.00	1.82
240	241	4.142138	ACTTTCATACAACACCCGCAAAAA	60.142	37.500	0.00	0.00	0.00	1.94
241	242	3.381908	ACTTTCATACAACACCCGCAAAA	59.618	39.130	0.00	0.00	0.00	2.44
242	243	2.952978	ACTTTCATACAACACCCGCAAA	59.047	40.909	0.00	0.00	0.00	3.68
243	244	2.577700	ACTTTCATACAACACCCGCAA	58.422	42.857	0.00	0.00	0.00	4.85
244	245	2.264005	ACTTTCATACAACACCCGCA	57.736	45.000	0.00	0.00	0.00	5.69
245	246	2.550606	TCAACTTTCATACAACACCCGC	59.449	45.455	0.00	0.00	0.00	6.13
246	247	4.062293	TCTCAACTTTCATACAACACCCG	58.938	43.478	0.00	0.00	0.00	5.28
247	248	4.819630	TGTCTCAACTTTCATACAACACCC	59.180	41.667	0.00	0.00	0.00	4.61
248	249	5.527582	AGTGTCTCAACTTTCATACAACACC	59.472	40.000	0.00	0.00	36.12	4.16
249	250	6.604735	AGTGTCTCAACTTTCATACAACAC	57.395	37.500	0.00	0.00	35.81	3.32
250	251	8.902540	ATAAGTGTCTCAACTTTCATACAACA	57.097	30.769	0.00	0.00	40.77	3.33
261	262	9.931210	CTTCGTTTTAAAATAAGTGTCTCAACT	57.069	29.630	3.52	0.00	0.00	3.16
262	263	9.166126	CCTTCGTTTTAAAATAAGTGTCTCAAC	57.834	33.333	17.70	0.00	0.00	3.18
263	264	9.111613	TCCTTCGTTTTAAAATAAGTGTCTCAA	57.888	29.630	17.70	1.04	0.00	3.02
264	265	8.665643	TCCTTCGTTTTAAAATAAGTGTCTCA	57.334	30.769	17.70	0.00	0.00	3.27
265	266	9.595357	CTTCCTTCGTTTTAAAATAAGTGTCTC	57.405	33.333	17.70	0.00	0.00	3.36
266	267	9.117183	ACTTCCTTCGTTTTAAAATAAGTGTCT	57.883	29.630	17.70	3.48	0.00	3.41
381	382	9.227777	GGAGTACAGACAATAAATTACCTGTTT	57.772	33.333	11.76	4.85	35.10	2.83
382	383	8.603304	AGGAGTACAGACAATAAATTACCTGTT	58.397	33.333	11.76	0.44	35.10	3.16
383	384	8.147244	AGGAGTACAGACAATAAATTACCTGT	57.853	34.615	0.00	0.00	36.38	4.00
384	385	9.449719	AAAGGAGTACAGACAATAAATTACCTG	57.550	33.333	0.00	0.00	0.00	4.00
385	386	9.668497	GAAAGGAGTACAGACAATAAATTACCT	57.332	33.333	0.00	0.00	0.00	3.08
386	387	8.601476	CGAAAGGAGTACAGACAATAAATTACC	58.399	37.037	0.00	0.00	0.00	2.85
387	388	9.148104	ACGAAAGGAGTACAGACAATAAATTAC	57.852	33.333	0.00	0.00	0.00	1.89
389	390	9.715121	TTACGAAAGGAGTACAGACAATAAATT	57.285	29.630	0.00	0.00	0.00	1.82
390	391	9.715121	TTTACGAAAGGAGTACAGACAATAAAT	57.285	29.630	0.00	0.00	0.00	1.40
391	392	8.981647	GTTTACGAAAGGAGTACAGACAATAAA	58.018	33.333	0.00	0.00	0.00	1.40
392	393	8.362639	AGTTTACGAAAGGAGTACAGACAATAA	58.637	33.333	0.00	0.00	0.00	1.40
393	394	7.889469	AGTTTACGAAAGGAGTACAGACAATA	58.111	34.615	0.00	0.00	0.00	1.90
394	395	6.756221	AGTTTACGAAAGGAGTACAGACAAT	58.244	36.000	0.00	0.00	0.00	2.71
395	396	6.152932	AGTTTACGAAAGGAGTACAGACAA	57.847	37.500	0.00	0.00	0.00	3.18
396	397	5.779529	AGTTTACGAAAGGAGTACAGACA	57.220	39.130	0.00	0.00	0.00	3.41
405	406	9.086336	CCGTTTGTATATTAGTTTACGAAAGGA	57.914	33.333	12.10	0.00	40.73	3.36
406	407	9.086336	TCCGTTTGTATATTAGTTTACGAAAGG	57.914	33.333	11.58	11.58	40.15	3.11
408	409	9.638239	ACTCCGTTTGTATATTAGTTTACGAAA	57.362	29.630	0.00	0.00	0.00	3.46
420	421	9.909644	GTTGAGATACATACTCCGTTTGTATAT	57.090	33.333	9.13	7.08	39.46	0.86
421	422	8.071967	CGTTGAGATACATACTCCGTTTGTATA	58.928	37.037	9.13	0.00	39.46	1.47
422	423	6.916387	CGTTGAGATACATACTCCGTTTGTAT	59.084	38.462	8.98	8.98	41.05	2.29
423	424	6.093909	TCGTTGAGATACATACTCCGTTTGTA	59.906	38.462	0.00	1.00	35.29	2.41
424	425	5.100259	CGTTGAGATACATACTCCGTTTGT	58.900	41.667	0.00	0.00	32.94	2.83
425	426	5.337554	TCGTTGAGATACATACTCCGTTTG	58.662	41.667	0.00	0.00	33.95	2.93
426	427	5.571784	TCGTTGAGATACATACTCCGTTT	57.428	39.130	0.00	0.00	33.95	3.60
427	428	5.571784	TTCGTTGAGATACATACTCCGTT	57.428	39.130	0.00	0.00	33.95	4.44
428	429	5.067413	ACATTCGTTGAGATACATACTCCGT	59.933	40.000	0.00	0.00	33.95	4.69
429	430	5.399596	CACATTCGTTGAGATACATACTCCG	59.600	44.000	0.00	0.00	33.95	4.63
430	431	6.504398	TCACATTCGTTGAGATACATACTCC	58.496	40.000	0.00	0.00	33.95	3.85
431	432	7.377397	GTCTCACATTCGTTGAGATACATACTC	59.623	40.741	5.40	0.00	40.29	2.59
432	433	7.148069	TGTCTCACATTCGTTGAGATACATACT	60.148	37.037	5.40	0.00	40.29	2.12
433	434	6.972901	TGTCTCACATTCGTTGAGATACATAC	59.027	38.462	5.40	0.00	40.29	2.39
434	435	7.095695	TGTCTCACATTCGTTGAGATACATA	57.904	36.000	5.40	0.00	40.29	2.29
435	436	5.965922	TGTCTCACATTCGTTGAGATACAT	58.034	37.500	5.40	0.00	40.29	2.29
436	437	5.385509	TGTCTCACATTCGTTGAGATACA	57.614	39.130	5.40	7.13	40.29	2.29
437	438	5.864474	ACTTGTCTCACATTCGTTGAGATAC	59.136	40.000	5.40	5.24	40.29	2.24
438	439	6.025749	ACTTGTCTCACATTCGTTGAGATA	57.974	37.500	5.40	0.41	40.29	1.98
439	440	4.887748	ACTTGTCTCACATTCGTTGAGAT	58.112	39.130	5.40	0.00	40.29	2.75
440	441	4.322080	ACTTGTCTCACATTCGTTGAGA	57.678	40.909	0.00	0.00	36.48	3.27
441	442	6.712241	ATTACTTGTCTCACATTCGTTGAG	57.288	37.500	0.00	0.00	0.00	3.02
442	443	7.351981	CAAATTACTTGTCTCACATTCGTTGA	58.648	34.615	0.00	0.00	0.00	3.18
443	444	6.578545	CCAAATTACTTGTCTCACATTCGTTG	59.421	38.462	0.00	0.00	32.65	4.10
444	445	6.293955	CCCAAATTACTTGTCTCACATTCGTT	60.294	38.462	0.00	0.00	32.65	3.85
445	446	5.181245	CCCAAATTACTTGTCTCACATTCGT	59.819	40.000	0.00	0.00	32.65	3.85
446	447	5.411361	TCCCAAATTACTTGTCTCACATTCG	59.589	40.000	0.00	0.00	32.65	3.34
447	448	6.349363	GGTCCCAAATTACTTGTCTCACATTC	60.349	42.308	0.00	0.00	32.65	2.67
448	449	5.476945	GGTCCCAAATTACTTGTCTCACATT	59.523	40.000	0.00	0.00	32.65	2.71
449	450	5.010282	GGTCCCAAATTACTTGTCTCACAT	58.990	41.667	0.00	0.00	32.65	3.21
450	451	4.394729	GGTCCCAAATTACTTGTCTCACA	58.605	43.478	0.00	0.00	32.65	3.58
451	452	3.435671	CGGTCCCAAATTACTTGTCTCAC	59.564	47.826	0.00	0.00	32.65	3.51
452	453	3.325425	TCGGTCCCAAATTACTTGTCTCA	59.675	43.478	0.00	0.00	32.65	3.27
453	454	3.933332	CTCGGTCCCAAATTACTTGTCTC	59.067	47.826	0.00	0.00	32.65	3.36
454	455	3.307480	CCTCGGTCCCAAATTACTTGTCT	60.307	47.826	0.00	0.00	32.65	3.41
455	456	3.007635	CCTCGGTCCCAAATTACTTGTC	58.992	50.000	0.00	0.00	32.65	3.18
456	457	2.374170	ACCTCGGTCCCAAATTACTTGT	59.626	45.455	0.00	0.00	32.65	3.16
457	458	3.067684	ACCTCGGTCCCAAATTACTTG	57.932	47.619	0.00	0.00	34.52	3.16
458	459	4.914177	TTACCTCGGTCCCAAATTACTT	57.086	40.909	0.00	0.00	0.00	2.24
459	460	5.426185	TGTATTACCTCGGTCCCAAATTACT	59.574	40.000	0.00	0.00	0.00	2.24
460	461	5.673514	TGTATTACCTCGGTCCCAAATTAC	58.326	41.667	0.00	0.00	0.00	1.89
461	462	5.954153	TGTATTACCTCGGTCCCAAATTA	57.046	39.130	0.00	0.00	0.00	1.40
462	463	4.847990	TGTATTACCTCGGTCCCAAATT	57.152	40.909	0.00	0.00	0.00	1.82
463	464	4.847990	TTGTATTACCTCGGTCCCAAAT	57.152	40.909	0.00	0.00	0.00	2.32
464	465	4.472108	AGATTGTATTACCTCGGTCCCAAA	59.528	41.667	0.00	0.00	0.00	3.28
465	466	4.035112	AGATTGTATTACCTCGGTCCCAA	58.965	43.478	0.00	0.00	0.00	4.12
466	467	3.649843	AGATTGTATTACCTCGGTCCCA	58.350	45.455	0.00	0.00	0.00	4.37
467	468	4.502777	GGAAGATTGTATTACCTCGGTCCC	60.503	50.000	0.00	0.00	0.00	4.46
468	469	4.344390	AGGAAGATTGTATTACCTCGGTCC	59.656	45.833	0.00	2.54	0.00	4.46
469	470	5.532664	AGGAAGATTGTATTACCTCGGTC	57.467	43.478	0.00	0.00	0.00	4.79
470	471	5.163332	GGAAGGAAGATTGTATTACCTCGGT	60.163	44.000	0.00	0.00	0.00	4.69
471	472	5.163343	TGGAAGGAAGATTGTATTACCTCGG	60.163	44.000	0.00	0.00	0.00	4.63
472	473	5.753921	GTGGAAGGAAGATTGTATTACCTCG	59.246	44.000	0.00	0.00	0.00	4.63
473	474	6.890293	AGTGGAAGGAAGATTGTATTACCTC	58.110	40.000	0.00	0.00	0.00	3.85
474	475	6.674419	AGAGTGGAAGGAAGATTGTATTACCT	59.326	38.462	0.00	0.00	0.00	3.08
475	476	6.890293	AGAGTGGAAGGAAGATTGTATTACC	58.110	40.000	0.00	0.00	0.00	2.85
476	477	8.794335	AAAGAGTGGAAGGAAGATTGTATTAC	57.206	34.615	0.00	0.00	0.00	1.89
478	479	9.807921	TTTAAAGAGTGGAAGGAAGATTGTATT	57.192	29.630	0.00	0.00	0.00	1.89
479	480	9.807921	TTTTAAAGAGTGGAAGGAAGATTGTAT	57.192	29.630	0.00	0.00	0.00	2.29
480	481	9.635404	TTTTTAAAGAGTGGAAGGAAGATTGTA	57.365	29.630	0.00	0.00	0.00	2.41
481	482	8.533569	TTTTTAAAGAGTGGAAGGAAGATTGT	57.466	30.769	0.00	0.00	0.00	2.71
482	483	8.084684	CCTTTTTAAAGAGTGGAAGGAAGATTG	58.915	37.037	7.95	0.00	38.28	2.67
483	484	7.785028	ACCTTTTTAAAGAGTGGAAGGAAGATT	59.215	33.333	17.17	0.00	38.28	2.40
484	485	7.298374	ACCTTTTTAAAGAGTGGAAGGAAGAT	58.702	34.615	17.17	0.00	38.28	2.40
485	486	6.669631	ACCTTTTTAAAGAGTGGAAGGAAGA	58.330	36.000	17.17	0.00	38.28	2.87
486	487	6.961360	ACCTTTTTAAAGAGTGGAAGGAAG	57.039	37.500	17.17	2.58	38.28	3.46
487	488	6.666113	ACAACCTTTTTAAAGAGTGGAAGGAA	59.334	34.615	17.17	0.00	38.28	3.36
488	489	6.192044	ACAACCTTTTTAAAGAGTGGAAGGA	58.808	36.000	17.17	0.00	38.28	3.36
489	490	6.465439	ACAACCTTTTTAAAGAGTGGAAGG	57.535	37.500	11.05	11.05	38.28	3.46
490	491	8.446599	TCTACAACCTTTTTAAAGAGTGGAAG	57.553	34.615	5.15	0.00	38.28	3.46
491	492	8.990163	ATCTACAACCTTTTTAAAGAGTGGAA	57.010	30.769	5.15	0.00	38.28	3.53
492	493	8.990163	AATCTACAACCTTTTTAAAGAGTGGA	57.010	30.769	5.15	7.17	38.28	4.02
504	505	8.686334	CCATAGCATGTTTAATCTACAACCTTT	58.314	33.333	0.00	0.00	0.00	3.11
505	506	7.834181	ACCATAGCATGTTTAATCTACAACCTT	59.166	33.333	0.00	0.00	0.00	3.50
506	507	7.346471	ACCATAGCATGTTTAATCTACAACCT	58.654	34.615	0.00	0.00	0.00	3.50
507	508	7.568199	ACCATAGCATGTTTAATCTACAACC	57.432	36.000	0.00	0.00	0.00	3.77
510	511	9.899661	AGTTTACCATAGCATGTTTAATCTACA	57.100	29.630	0.00	0.00	0.00	2.74
513	514	9.113838	CAGAGTTTACCATAGCATGTTTAATCT	57.886	33.333	0.00	0.00	0.00	2.40
514	515	9.109393	TCAGAGTTTACCATAGCATGTTTAATC	57.891	33.333	0.00	0.00	0.00	1.75
515	516	8.893727	GTCAGAGTTTACCATAGCATGTTTAAT	58.106	33.333	0.00	0.00	0.00	1.40
516	517	7.335924	GGTCAGAGTTTACCATAGCATGTTTAA	59.664	37.037	0.00	0.00	35.73	1.52
517	518	6.821665	GGTCAGAGTTTACCATAGCATGTTTA	59.178	38.462	0.00	0.00	35.73	2.01
527	528	2.269940	AGCCAGGTCAGAGTTTACCAT	58.730	47.619	0.00	0.00	38.30	3.55
530	531	5.346181	AAGATAGCCAGGTCAGAGTTTAC	57.654	43.478	0.00	0.00	0.00	2.01
574	575	5.300286	GCACACTTTCCTTTGCCATCTATAT	59.700	40.000	0.00	0.00	0.00	0.86
579	580	2.070262	GCACACTTTCCTTTGCCATC	57.930	50.000	0.00	0.00	0.00	3.51
584	585	0.738389	ACACGGCACACTTTCCTTTG	59.262	50.000	0.00	0.00	0.00	2.77
585	586	0.738389	CACACGGCACACTTTCCTTT	59.262	50.000	0.00	0.00	0.00	3.11
588	589	1.355210	CACACACGGCACACTTTCC	59.645	57.895	0.00	0.00	0.00	3.13
590	591	2.770589	GGCACACACGGCACACTTT	61.771	57.895	0.00	0.00	0.00	2.66
655	656	4.261801	TCAGATCCTCAACGATTTTTCCC	58.738	43.478	0.00	0.00	0.00	3.97
695	696	4.505742	GGGATGGATCTGATTTAGGTGGAC	60.506	50.000	0.00	0.00	0.00	4.02
857	890	1.407437	CGGGTTCTTGGAGGAGAATGG	60.407	57.143	0.00	0.00	37.91	3.16
923	963	4.550831	CGCAGCTTATACGATCAACCAAAG	60.551	45.833	0.00	0.00	0.00	2.77
928	975	1.192534	GCCGCAGCTTATACGATCAAC	59.807	52.381	0.00	0.00	35.50	3.18
967	1015	1.554160	TGGTCCGACGGGCTAATTAAA	59.446	47.619	19.55	0.00	0.00	1.52
968	1016	1.134729	GTGGTCCGACGGGCTAATTAA	60.135	52.381	19.55	0.00	0.00	1.40
969	1017	0.461135	GTGGTCCGACGGGCTAATTA	59.539	55.000	19.55	0.00	0.00	1.40
970	1018	1.219935	GTGGTCCGACGGGCTAATT	59.780	57.895	19.55	0.00	0.00	1.40
971	1019	2.728435	GGTGGTCCGACGGGCTAAT	61.728	63.158	19.55	0.00	0.00	1.73
1205	1253	1.000506	GGAGACGGAGCAAAGTGTGTA	59.999	52.381	0.00	0.00	0.00	2.90
1210	1258	1.004440	GCTGGAGACGGAGCAAAGT	60.004	57.895	0.00	0.00	39.98	2.66
1211	1259	1.743252	GGCTGGAGACGGAGCAAAG	60.743	63.158	0.00	0.00	39.98	2.77
1212	1260	2.347490	GGCTGGAGACGGAGCAAA	59.653	61.111	0.00	0.00	39.98	3.68
1266	1334	5.075493	AGATGGAGTGAAGCTTGTTGAATT	58.925	37.500	2.10	0.00	0.00	2.17
1297	1365	1.938657	ATCAGTCACGGAGCTCACGG	61.939	60.000	22.76	11.36	35.23	4.94
1298	1366	0.109086	AATCAGTCACGGAGCTCACG	60.109	55.000	17.19	18.28	37.36	4.35
1299	1367	2.941453	TAATCAGTCACGGAGCTCAC	57.059	50.000	17.19	4.81	0.00	3.51
1300	1368	3.447229	TGAATAATCAGTCACGGAGCTCA	59.553	43.478	17.19	0.00	0.00	4.26
1301	1369	4.046938	TGAATAATCAGTCACGGAGCTC	57.953	45.455	4.71	4.71	0.00	4.09
1302	1370	4.052159	CTGAATAATCAGTCACGGAGCT	57.948	45.455	0.00	0.00	46.60	4.09
1324	1392	1.927895	AATCGACTGAGCGGATCAAC	58.072	50.000	0.00	0.00	37.52	3.18
1331	1399	3.002759	TGATGAGACTAATCGACTGAGCG	59.997	47.826	0.00	0.00	0.00	5.03
1359	1430	1.859383	TCAACTTCGAATGCGTGACA	58.141	45.000	0.00	0.00	38.98	3.58
1372	1443	5.163416	ACCAAACAGCAGCTAAATTCAACTT	60.163	36.000	0.00	0.00	0.00	2.66
2395	2469	2.335316	ACAAAAAGTAGTCCACCGCA	57.665	45.000	0.00	0.00	0.00	5.69
2551	2633	3.489229	GGTTCTGCAGGTCTTTTGTTGAC	60.489	47.826	15.13	0.00	0.00	3.18
2554	2636	2.733956	TGGTTCTGCAGGTCTTTTGTT	58.266	42.857	15.13	0.00	0.00	2.83
2555	2637	2.435372	TGGTTCTGCAGGTCTTTTGT	57.565	45.000	15.13	0.00	0.00	2.83
2556	2638	3.381272	TCTTTGGTTCTGCAGGTCTTTTG	59.619	43.478	15.13	0.45	0.00	2.44
2557	2639	3.631250	TCTTTGGTTCTGCAGGTCTTTT	58.369	40.909	15.13	0.00	0.00	2.27
2652	2850	4.571580	ACACGACCGAGTGATTGTTAAAAA	59.428	37.500	11.50	0.00	44.43	1.94
2653	2851	4.025563	CACACGACCGAGTGATTGTTAAAA	60.026	41.667	13.26	0.00	44.43	1.52
2654	2852	3.491639	CACACGACCGAGTGATTGTTAAA	59.508	43.478	13.26	0.00	44.43	1.52
2655	2853	3.054166	CACACGACCGAGTGATTGTTAA	58.946	45.455	13.26	0.00	44.43	2.01
2656	2854	2.668250	CACACGACCGAGTGATTGTTA	58.332	47.619	13.26	0.00	44.43	2.41
2690	3004	0.916845	AGAGAAGAGGGGAAAGGGCC	60.917	60.000	0.00	0.00	0.00	5.80
2691	3005	0.995803	AAGAGAAGAGGGGAAAGGGC	59.004	55.000	0.00	0.00	0.00	5.19
2730	3045	6.909895	GGTGCCAATTCAAAAATTTGTTGTAC	59.090	34.615	5.84	5.88	39.18	2.90
2763	4268	2.943033	CACGAAACTTGTGGAGAAACCT	59.057	45.455	0.00	0.00	39.86	3.50
2778	4283	4.088056	TCATTACACCCTTTCCACGAAA	57.912	40.909	0.00	0.00	0.00	3.46
2788	4293	4.567747	GGAAGGTTCACATCATTACACCCT	60.568	45.833	0.00	0.00	0.00	4.34
2795	4300	5.702670	CGCATATAGGAAGGTTCACATCATT	59.297	40.000	0.00	0.00	0.00	2.57
2799	4304	3.646162	TCCGCATATAGGAAGGTTCACAT	59.354	43.478	0.00	0.00	34.33	3.21
2870	4378	4.104102	TCACCAAAACCTCTCAGTATGGTT	59.896	41.667	0.00	0.00	44.92	3.67
2913	4421	8.225603	TGATGGAGCTCTTATAAAATTTGGTC	57.774	34.615	14.64	0.00	0.00	4.02
2923	4431	6.573094	CGAATGGACATGATGGAGCTCTTATA	60.573	42.308	14.64	0.00	0.00	0.98
2941	4449	3.627395	AAGGTAGTTGCATCGAATGGA	57.373	42.857	0.00	0.00	0.00	3.41
2968	4476	2.242043	CAACCTTTGAGGATTGTGCCT	58.758	47.619	0.07	0.00	37.67	4.75
2985	4493	3.198489	GCTCTAGCTGCCGGCAAC	61.198	66.667	32.09	27.13	44.79	4.17
2995	4503	9.670719	GTATTTTATTGGAAAAGATGCTCTAGC	57.329	33.333	0.00	0.00	42.50	3.42
3078	4586	3.058293	CCAACTTGCTTGCGACTTTATCA	60.058	43.478	0.00	0.00	0.00	2.15
3121	4629	0.802494	GTGCGTCCAATGGTGGTAAG	59.198	55.000	0.00	0.00	46.11	2.34
3174	4682	9.569122	AATAACAAGTGGTTGATAAAGTACACT	57.431	29.630	0.00	0.00	40.73	3.55
3177	4685	9.537848	CGAAATAACAAGTGGTTGATAAAGTAC	57.462	33.333	0.00	0.00	40.73	2.73
3217	4726	9.758651	AATCCCTTTCAAACTTGTTAACATTAC	57.241	29.630	9.56	0.00	0.00	1.89
3224	4733	9.377312	CAAAGAAAATCCCTTTCAAACTTGTTA	57.623	29.630	0.52	0.00	45.15	2.41
3310	4819	1.129251	GACCATCATATTCATGCGGCG	59.871	52.381	0.51	0.51	31.11	6.46
3376	4885	1.066143	CCGTCTACTCACAAGGCCATT	60.066	52.381	5.01	0.00	0.00	3.16
3391	4903	0.463295	CATCATGCTTGGCTCCGTCT	60.463	55.000	0.00	0.00	0.00	4.18
3429	4941	3.068590	GGTGCTCCACATCCAATTTATGG	59.931	47.826	0.00	0.00	42.68	2.74
3430	4942	3.956199	AGGTGCTCCACATCCAATTTATG	59.044	43.478	7.70	0.00	35.86	1.90
3431	4943	4.079558	AGAGGTGCTCCACATCCAATTTAT	60.080	41.667	7.70	0.00	44.79	1.40
3432	4944	3.266772	AGAGGTGCTCCACATCCAATTTA	59.733	43.478	7.70	0.00	44.79	1.40
3433	4945	2.042162	AGAGGTGCTCCACATCCAATTT	59.958	45.455	7.70	0.00	44.79	1.82
3434	4946	1.637553	AGAGGTGCTCCACATCCAATT	59.362	47.619	7.70	0.00	44.79	2.32
3435	4947	1.293062	AGAGGTGCTCCACATCCAAT	58.707	50.000	7.70	0.00	44.79	3.16
3436	4948	1.003580	GAAGAGGTGCTCCACATCCAA	59.996	52.381	7.70	0.00	44.79	3.53
3437	4949	0.615331	GAAGAGGTGCTCCACATCCA	59.385	55.000	7.70	0.00	44.79	3.41
3438	4950	0.908198	AGAAGAGGTGCTCCACATCC	59.092	55.000	7.70	0.00	44.79	3.51
3439	4951	2.235898	AGAAGAAGAGGTGCTCCACATC	59.764	50.000	7.70	3.46	44.15	3.06
3440	4952	2.235898	GAGAAGAAGAGGTGCTCCACAT	59.764	50.000	7.70	0.00	35.86	3.21
3441	4953	1.620819	GAGAAGAAGAGGTGCTCCACA	59.379	52.381	7.70	0.00	35.86	4.17
3442	4954	1.899142	AGAGAAGAAGAGGTGCTCCAC	59.101	52.381	7.70	0.11	35.89	4.02
3443	4955	2.317371	AGAGAAGAAGAGGTGCTCCA	57.683	50.000	7.70	0.00	35.89	3.86
3444	4956	3.694043	AAAGAGAAGAAGAGGTGCTCC	57.306	47.619	0.00	0.00	0.00	4.70
3445	4957	6.072948	GGTTTAAAAGAGAAGAAGAGGTGCTC	60.073	42.308	0.00	0.00	0.00	4.26
3446	4958	5.765677	GGTTTAAAAGAGAAGAAGAGGTGCT	59.234	40.000	0.00	0.00	0.00	4.40
3447	4959	5.765677	AGGTTTAAAAGAGAAGAAGAGGTGC	59.234	40.000	0.00	0.00	0.00	5.01
3448	4960	6.146347	CGAGGTTTAAAAGAGAAGAAGAGGTG	59.854	42.308	0.00	0.00	0.00	4.00
3449	4961	6.224584	CGAGGTTTAAAAGAGAAGAAGAGGT	58.775	40.000	0.00	0.00	0.00	3.85
3450	4962	5.639931	CCGAGGTTTAAAAGAGAAGAAGAGG	59.360	44.000	0.00	0.00	0.00	3.69
3451	4963	5.120986	GCCGAGGTTTAAAAGAGAAGAAGAG	59.879	44.000	0.00	0.00	0.00	2.85
3452	4964	4.995487	GCCGAGGTTTAAAAGAGAAGAAGA	59.005	41.667	0.00	0.00	0.00	2.87
3453	4965	4.755123	TGCCGAGGTTTAAAAGAGAAGAAG	59.245	41.667	0.00	0.00	0.00	2.85
3454	4966	4.710324	TGCCGAGGTTTAAAAGAGAAGAA	58.290	39.130	0.00	0.00	0.00	2.52
3455	4967	4.315803	CTGCCGAGGTTTAAAAGAGAAGA	58.684	43.478	0.00	0.00	0.00	2.87
3456	4968	3.120165	GCTGCCGAGGTTTAAAAGAGAAG	60.120	47.826	0.00	0.00	0.00	2.85
3457	4969	2.812011	GCTGCCGAGGTTTAAAAGAGAA	59.188	45.455	0.00	0.00	0.00	2.87
3458	4970	2.038557	AGCTGCCGAGGTTTAAAAGAGA	59.961	45.455	0.00	0.00	0.00	3.10
3459	4971	2.427506	AGCTGCCGAGGTTTAAAAGAG	58.572	47.619	0.00	0.00	0.00	2.85
3460	4972	2.561478	AGCTGCCGAGGTTTAAAAGA	57.439	45.000	0.00	0.00	0.00	2.52
3461	4973	3.643159	AAAGCTGCCGAGGTTTAAAAG	57.357	42.857	0.00	0.00	45.89	2.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.