Multiple sequence alignment - TraesCS5A01G472500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G472500 chr5A 100.000 3723 0 0 1 3723 649400812 649404534 0.000000e+00 6876.0
1 TraesCS5A01G472500 chr5A 85.506 1987 204 50 814 2753 649426455 649428404 0.000000e+00 1997.0
2 TraesCS5A01G472500 chr5D 92.300 2078 121 25 728 2795 520860137 520862185 0.000000e+00 2915.0
3 TraesCS5A01G472500 chr5D 85.972 1939 204 44 814 2724 520887858 520889756 0.000000e+00 2012.0
4 TraesCS5A01G472500 chr5D 87.000 900 94 14 2843 3723 520862302 520863197 0.000000e+00 992.0
5 TraesCS5A01G472500 chr5B 91.198 1761 117 16 1003 2762 656804982 656806705 0.000000e+00 2359.0
6 TraesCS5A01G472500 chr5B 86.400 1978 199 48 814 2751 656838831 656840778 0.000000e+00 2098.0
7 TraesCS5A01G472500 chr5B 77.835 776 146 24 2927 3685 275259864 275260630 1.220000e-124 457.0
8 TraesCS5A01G472500 chr5B 77.442 727 150 8 2968 3686 108838681 108839401 4.450000e-114 422.0
9 TraesCS5A01G472500 chr5B 78.464 599 119 9 2932 3526 684618989 684619581 2.100000e-102 383.0
10 TraesCS5A01G472500 chr5B 83.951 243 26 6 719 948 656804120 656804362 1.740000e-53 220.0
11 TraesCS5A01G472500 chr4D 79.112 766 139 17 2932 3686 508823591 508824346 3.320000e-140 508.0
12 TraesCS5A01G472500 chr3B 79.091 660 122 13 3040 3692 344946083 344945433 1.230000e-119 440.0
13 TraesCS5A01G472500 chr6B 76.234 871 179 22 2845 3692 575325098 575324233 1.590000e-118 436.0
14 TraesCS5A01G472500 chr3A 78.899 654 123 14 3040 3686 277520956 277521601 2.660000e-116 429.0
15 TraesCS5A01G472500 chr3A 77.062 776 148 22 2933 3690 149985031 149984268 1.600000e-113 420.0
16 TraesCS5A01G472500 chr3A 86.765 136 16 2 2 137 738210282 738210149 2.320000e-32 150.0
17 TraesCS5A01G472500 chr3D 77.240 703 145 10 2997 3687 47243660 47244359 7.490000e-107 398.0
18 TraesCS5A01G472500 chr3D 75.529 662 135 19 2844 3489 373329949 373330599 2.170000e-77 300.0
19 TraesCS5A01G472500 chr2A 86.452 155 21 0 1231 1385 465556590 465556436 1.780000e-38 171.0
20 TraesCS5A01G472500 chr2D 85.806 155 22 0 1231 1385 349734277 349734123 8.270000e-37 165.0
21 TraesCS5A01G472500 chr2B 85.161 155 23 0 1231 1385 415989189 415989343 3.850000e-35 159.0
22 TraesCS5A01G472500 chr7B 80.788 203 33 6 2938 3137 379752039 379752238 1.790000e-33 154.0
23 TraesCS5A01G472500 chr1B 83.212 137 20 2 3 139 83968391 83968524 5.050000e-24 122.0
24 TraesCS5A01G472500 chr7A 84.167 120 17 2 17 135 634399662 634399544 8.450000e-22 115.0
25 TraesCS5A01G472500 chr6A 85.714 77 10 1 2843 2919 564681611 564681686 3.080000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G472500 chr5A 649400812 649404534 3722 False 6876.0 6876 100.0000 1 3723 1 chr5A.!!$F1 3722
1 TraesCS5A01G472500 chr5A 649426455 649428404 1949 False 1997.0 1997 85.5060 814 2753 1 chr5A.!!$F2 1939
2 TraesCS5A01G472500 chr5D 520887858 520889756 1898 False 2012.0 2012 85.9720 814 2724 1 chr5D.!!$F1 1910
3 TraesCS5A01G472500 chr5D 520860137 520863197 3060 False 1953.5 2915 89.6500 728 3723 2 chr5D.!!$F2 2995
4 TraesCS5A01G472500 chr5B 656838831 656840778 1947 False 2098.0 2098 86.4000 814 2751 1 chr5B.!!$F3 1937
5 TraesCS5A01G472500 chr5B 656804120 656806705 2585 False 1289.5 2359 87.5745 719 2762 2 chr5B.!!$F5 2043
6 TraesCS5A01G472500 chr5B 275259864 275260630 766 False 457.0 457 77.8350 2927 3685 1 chr5B.!!$F2 758
7 TraesCS5A01G472500 chr5B 108838681 108839401 720 False 422.0 422 77.4420 2968 3686 1 chr5B.!!$F1 718
8 TraesCS5A01G472500 chr5B 684618989 684619581 592 False 383.0 383 78.4640 2932 3526 1 chr5B.!!$F4 594
9 TraesCS5A01G472500 chr4D 508823591 508824346 755 False 508.0 508 79.1120 2932 3686 1 chr4D.!!$F1 754
10 TraesCS5A01G472500 chr3B 344945433 344946083 650 True 440.0 440 79.0910 3040 3692 1 chr3B.!!$R1 652
11 TraesCS5A01G472500 chr6B 575324233 575325098 865 True 436.0 436 76.2340 2845 3692 1 chr6B.!!$R1 847
12 TraesCS5A01G472500 chr3A 277520956 277521601 645 False 429.0 429 78.8990 3040 3686 1 chr3A.!!$F1 646
13 TraesCS5A01G472500 chr3A 149984268 149985031 763 True 420.0 420 77.0620 2933 3690 1 chr3A.!!$R1 757
14 TraesCS5A01G472500 chr3D 47243660 47244359 699 False 398.0 398 77.2400 2997 3687 1 chr3D.!!$F1 690
15 TraesCS5A01G472500 chr3D 373329949 373330599 650 False 300.0 300 75.5290 2844 3489 1 chr3D.!!$F2 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 692 0.237235 CACACACACGTTGTATGCCC 59.763 55.0 3.60 0.00 35.67 5.36 F
1105 1723 0.179084 CCAATCACGACGTGGCCTAT 60.179 55.0 26.55 10.84 33.87 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2552 1.522569 GGCGAGTATGCTGAAGGGT 59.477 57.895 0.0 0.0 34.52 4.34 R
2820 3573 1.068588 TGTCTTGTGGACTTGAGGACG 59.931 52.381 0.0 0.0 44.74 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.669164 ATAAGAAAAGGCTCGTCTTCTCT 57.331 39.130 14.03 1.65 33.70 3.10
23 24 4.344359 AAGAAAAGGCTCGTCTTCTCTT 57.656 40.909 6.78 0.00 31.39 2.85
24 25 5.470047 AAGAAAAGGCTCGTCTTCTCTTA 57.530 39.130 0.00 0.00 33.68 2.10
25 26 5.470047 AGAAAAGGCTCGTCTTCTCTTAA 57.530 39.130 0.00 0.00 0.00 1.85
26 27 6.043854 AGAAAAGGCTCGTCTTCTCTTAAT 57.956 37.500 0.00 0.00 0.00 1.40
27 28 6.468543 AGAAAAGGCTCGTCTTCTCTTAATT 58.531 36.000 0.00 0.00 0.00 1.40
28 29 7.612677 AGAAAAGGCTCGTCTTCTCTTAATTA 58.387 34.615 0.00 0.00 0.00 1.40
29 30 8.095169 AGAAAAGGCTCGTCTTCTCTTAATTAA 58.905 33.333 0.00 0.00 0.00 1.40
30 31 7.835634 AAAGGCTCGTCTTCTCTTAATTAAG 57.164 36.000 17.60 17.60 34.65 1.85
31 32 6.777213 AGGCTCGTCTTCTCTTAATTAAGA 57.223 37.500 23.26 23.26 39.82 2.10
32 33 6.566141 AGGCTCGTCTTCTCTTAATTAAGAC 58.434 40.000 21.46 14.15 43.59 3.01
33 34 6.153000 AGGCTCGTCTTCTCTTAATTAAGACA 59.847 38.462 21.46 10.97 46.06 3.41
34 35 6.981559 GGCTCGTCTTCTCTTAATTAAGACAT 59.018 38.462 21.46 0.00 46.06 3.06
35 36 7.043059 GGCTCGTCTTCTCTTAATTAAGACATG 60.043 40.741 21.46 14.53 46.06 3.21
36 37 7.489757 GCTCGTCTTCTCTTAATTAAGACATGT 59.510 37.037 21.46 0.00 46.06 3.21
37 38 9.360093 CTCGTCTTCTCTTAATTAAGACATGTT 57.640 33.333 21.46 0.00 46.06 2.71
38 39 9.706691 TCGTCTTCTCTTAATTAAGACATGTTT 57.293 29.630 21.46 0.00 46.06 2.83
55 56 9.846248 AGACATGTTTTCTTAGCAATAATTGTC 57.154 29.630 0.00 0.00 0.00 3.18
56 57 9.846248 GACATGTTTTCTTAGCAATAATTGTCT 57.154 29.630 0.00 0.00 0.00 3.41
57 58 9.846248 ACATGTTTTCTTAGCAATAATTGTCTC 57.154 29.630 0.00 0.00 0.00 3.36
58 59 9.844790 CATGTTTTCTTAGCAATAATTGTCTCA 57.155 29.630 0.00 0.00 0.00 3.27
59 60 9.846248 ATGTTTTCTTAGCAATAATTGTCTCAC 57.154 29.630 0.00 0.00 0.00 3.51
60 61 8.296713 TGTTTTCTTAGCAATAATTGTCTCACC 58.703 33.333 0.00 0.00 0.00 4.02
61 62 7.994425 TTTCTTAGCAATAATTGTCTCACCA 57.006 32.000 0.00 0.00 0.00 4.17
62 63 8.579850 TTTCTTAGCAATAATTGTCTCACCAT 57.420 30.769 0.00 0.00 0.00 3.55
63 64 9.679661 TTTCTTAGCAATAATTGTCTCACCATA 57.320 29.630 0.00 0.00 0.00 2.74
64 65 9.851686 TTCTTAGCAATAATTGTCTCACCATAT 57.148 29.630 0.00 0.00 0.00 1.78
118 119 9.920946 AGGACTAACAAATAATCCATTGTACAT 57.079 29.630 0.00 0.00 38.75 2.29
150 151 9.787435 TTTTATTGTCTTATCAACCACTGTACT 57.213 29.630 0.00 0.00 0.00 2.73
151 152 8.997621 TTATTGTCTTATCAACCACTGTACTC 57.002 34.615 0.00 0.00 0.00 2.59
152 153 6.665992 TTGTCTTATCAACCACTGTACTCT 57.334 37.500 0.00 0.00 0.00 3.24
153 154 6.665992 TGTCTTATCAACCACTGTACTCTT 57.334 37.500 0.00 0.00 0.00 2.85
154 155 6.688578 TGTCTTATCAACCACTGTACTCTTC 58.311 40.000 0.00 0.00 0.00 2.87
155 156 6.493802 TGTCTTATCAACCACTGTACTCTTCT 59.506 38.462 0.00 0.00 0.00 2.85
156 157 7.668469 TGTCTTATCAACCACTGTACTCTTCTA 59.332 37.037 0.00 0.00 0.00 2.10
157 158 8.521176 GTCTTATCAACCACTGTACTCTTCTAA 58.479 37.037 0.00 0.00 0.00 2.10
158 159 9.085645 TCTTATCAACCACTGTACTCTTCTAAA 57.914 33.333 0.00 0.00 0.00 1.85
159 160 9.706691 CTTATCAACCACTGTACTCTTCTAAAA 57.293 33.333 0.00 0.00 0.00 1.52
181 182 3.676291 AAACAACCATTGTACATGCCC 57.324 42.857 0.00 0.00 44.59 5.36
182 183 2.603075 ACAACCATTGTACATGCCCT 57.397 45.000 0.00 0.00 43.27 5.19
183 184 2.446435 ACAACCATTGTACATGCCCTC 58.554 47.619 0.00 0.00 43.27 4.30
184 185 2.224992 ACAACCATTGTACATGCCCTCA 60.225 45.455 0.00 0.00 43.27 3.86
185 186 2.128771 ACCATTGTACATGCCCTCAC 57.871 50.000 0.00 0.00 0.00 3.51
186 187 1.354031 ACCATTGTACATGCCCTCACA 59.646 47.619 0.00 0.00 0.00 3.58
187 188 2.224992 ACCATTGTACATGCCCTCACAA 60.225 45.455 0.00 0.00 35.53 3.33
188 189 3.025978 CCATTGTACATGCCCTCACAAT 58.974 45.455 0.00 0.00 41.14 2.71
189 190 3.448301 CCATTGTACATGCCCTCACAATT 59.552 43.478 0.00 0.00 39.06 2.32
190 191 4.440525 CCATTGTACATGCCCTCACAATTC 60.441 45.833 0.00 0.00 39.06 2.17
191 192 3.431673 TGTACATGCCCTCACAATTCA 57.568 42.857 0.00 0.00 0.00 2.57
192 193 3.081061 TGTACATGCCCTCACAATTCAC 58.919 45.455 0.00 0.00 0.00 3.18
193 194 2.291209 ACATGCCCTCACAATTCACA 57.709 45.000 0.00 0.00 0.00 3.58
194 195 2.596346 ACATGCCCTCACAATTCACAA 58.404 42.857 0.00 0.00 0.00 3.33
195 196 2.964464 ACATGCCCTCACAATTCACAAA 59.036 40.909 0.00 0.00 0.00 2.83
196 197 3.579586 ACATGCCCTCACAATTCACAAAT 59.420 39.130 0.00 0.00 0.00 2.32
197 198 3.663995 TGCCCTCACAATTCACAAATG 57.336 42.857 0.00 0.00 0.00 2.32
198 199 3.229293 TGCCCTCACAATTCACAAATGA 58.771 40.909 0.00 0.00 0.00 2.57
199 200 3.833650 TGCCCTCACAATTCACAAATGAT 59.166 39.130 0.00 0.00 33.85 2.45
200 201 4.283978 TGCCCTCACAATTCACAAATGATT 59.716 37.500 0.00 0.00 33.85 2.57
201 202 4.866486 GCCCTCACAATTCACAAATGATTC 59.134 41.667 0.00 0.00 33.85 2.52
202 203 5.337009 GCCCTCACAATTCACAAATGATTCT 60.337 40.000 0.00 0.00 33.85 2.40
203 204 6.127647 GCCCTCACAATTCACAAATGATTCTA 60.128 38.462 0.00 0.00 33.85 2.10
204 205 7.417116 GCCCTCACAATTCACAAATGATTCTAT 60.417 37.037 0.00 0.00 33.85 1.98
205 206 7.919091 CCCTCACAATTCACAAATGATTCTATG 59.081 37.037 0.00 0.00 33.85 2.23
206 207 7.434307 CCTCACAATTCACAAATGATTCTATGC 59.566 37.037 0.00 0.00 33.85 3.14
207 208 7.828712 TCACAATTCACAAATGATTCTATGCA 58.171 30.769 0.00 0.00 33.85 3.96
208 209 7.971722 TCACAATTCACAAATGATTCTATGCAG 59.028 33.333 0.00 0.00 33.85 4.41
209 210 7.758076 CACAATTCACAAATGATTCTATGCAGT 59.242 33.333 0.00 0.00 33.85 4.40
210 211 7.758076 ACAATTCACAAATGATTCTATGCAGTG 59.242 33.333 0.00 0.00 33.85 3.66
211 212 7.634671 ATTCACAAATGATTCTATGCAGTGA 57.365 32.000 0.00 0.00 33.85 3.41
212 213 7.451501 TTCACAAATGATTCTATGCAGTGAA 57.548 32.000 6.62 6.62 40.06 3.18
213 214 7.080353 TCACAAATGATTCTATGCAGTGAAG 57.920 36.000 9.50 0.00 31.36 3.02
214 215 6.656270 TCACAAATGATTCTATGCAGTGAAGT 59.344 34.615 9.50 0.17 31.36 3.01
215 216 7.175467 TCACAAATGATTCTATGCAGTGAAGTT 59.825 33.333 9.50 3.37 31.36 2.66
216 217 7.811236 CACAAATGATTCTATGCAGTGAAGTTT 59.189 33.333 9.50 7.78 0.00 2.66
217 218 9.013229 ACAAATGATTCTATGCAGTGAAGTTTA 57.987 29.630 9.50 0.00 0.00 2.01
220 221 7.558161 TGATTCTATGCAGTGAAGTTTATGG 57.442 36.000 9.50 0.00 0.00 2.74
221 222 7.112122 TGATTCTATGCAGTGAAGTTTATGGT 58.888 34.615 9.50 0.00 0.00 3.55
222 223 8.264347 TGATTCTATGCAGTGAAGTTTATGGTA 58.736 33.333 9.50 0.00 0.00 3.25
223 224 9.109393 GATTCTATGCAGTGAAGTTTATGGTAA 57.891 33.333 9.50 0.00 0.00 2.85
224 225 7.843490 TCTATGCAGTGAAGTTTATGGTAAC 57.157 36.000 0.00 0.00 0.00 2.50
244 245 9.747898 TGGTAACATCTGGTTTATCATAACTTT 57.252 29.630 0.00 0.00 46.17 2.66
278 279 9.927668 CATATTTGTTTGAGGATTTTAGTTGGT 57.072 29.630 0.00 0.00 0.00 3.67
279 280 9.927668 ATATTTGTTTGAGGATTTTAGTTGGTG 57.072 29.630 0.00 0.00 0.00 4.17
280 281 5.195001 TGTTTGAGGATTTTAGTTGGTGC 57.805 39.130 0.00 0.00 0.00 5.01
281 282 4.038642 TGTTTGAGGATTTTAGTTGGTGCC 59.961 41.667 0.00 0.00 0.00 5.01
282 283 3.806949 TGAGGATTTTAGTTGGTGCCT 57.193 42.857 0.00 0.00 0.00 4.75
283 284 3.686016 TGAGGATTTTAGTTGGTGCCTC 58.314 45.455 0.00 0.00 40.56 4.70
284 285 3.330701 TGAGGATTTTAGTTGGTGCCTCT 59.669 43.478 0.00 0.00 40.73 3.69
285 286 4.202567 TGAGGATTTTAGTTGGTGCCTCTT 60.203 41.667 0.00 0.00 40.73 2.85
286 287 4.740902 AGGATTTTAGTTGGTGCCTCTTT 58.259 39.130 0.00 0.00 0.00 2.52
287 288 4.524328 AGGATTTTAGTTGGTGCCTCTTTG 59.476 41.667 0.00 0.00 0.00 2.77
288 289 4.522789 GGATTTTAGTTGGTGCCTCTTTGA 59.477 41.667 0.00 0.00 0.00 2.69
289 290 5.185828 GGATTTTAGTTGGTGCCTCTTTGAT 59.814 40.000 0.00 0.00 0.00 2.57
290 291 6.295292 GGATTTTAGTTGGTGCCTCTTTGATT 60.295 38.462 0.00 0.00 0.00 2.57
291 292 7.093945 GGATTTTAGTTGGTGCCTCTTTGATTA 60.094 37.037 0.00 0.00 0.00 1.75
292 293 6.817765 TTTAGTTGGTGCCTCTTTGATTAG 57.182 37.500 0.00 0.00 0.00 1.73
293 294 4.640771 AGTTGGTGCCTCTTTGATTAGA 57.359 40.909 0.00 0.00 0.00 2.10
294 295 4.985538 AGTTGGTGCCTCTTTGATTAGAA 58.014 39.130 0.00 0.00 0.00 2.10
295 296 5.385198 AGTTGGTGCCTCTTTGATTAGAAA 58.615 37.500 0.00 0.00 0.00 2.52
296 297 5.474876 AGTTGGTGCCTCTTTGATTAGAAAG 59.525 40.000 0.00 0.00 34.72 2.62
297 298 5.241403 TGGTGCCTCTTTGATTAGAAAGA 57.759 39.130 0.00 0.00 39.20 2.52
298 299 5.819991 TGGTGCCTCTTTGATTAGAAAGAT 58.180 37.500 0.00 0.00 40.38 2.40
299 300 6.248433 TGGTGCCTCTTTGATTAGAAAGATT 58.752 36.000 0.00 0.00 40.38 2.40
300 301 6.721208 TGGTGCCTCTTTGATTAGAAAGATTT 59.279 34.615 0.00 0.00 40.38 2.17
301 302 7.031975 GGTGCCTCTTTGATTAGAAAGATTTG 58.968 38.462 0.00 0.00 40.38 2.32
302 303 7.309438 GGTGCCTCTTTGATTAGAAAGATTTGT 60.309 37.037 0.00 0.00 40.38 2.83
303 304 8.084684 GTGCCTCTTTGATTAGAAAGATTTGTT 58.915 33.333 0.00 0.00 40.38 2.83
304 305 9.295825 TGCCTCTTTGATTAGAAAGATTTGTTA 57.704 29.630 0.00 0.00 40.38 2.41
349 350 4.989279 AAAATAGTGTGGCATGTCATCC 57.011 40.909 1.89 0.00 0.00 3.51
350 351 3.939740 AATAGTGTGGCATGTCATCCT 57.060 42.857 1.89 5.05 0.00 3.24
351 352 5.372343 AAATAGTGTGGCATGTCATCCTA 57.628 39.130 1.89 7.32 0.00 2.94
352 353 5.573380 AATAGTGTGGCATGTCATCCTAT 57.427 39.130 1.89 9.40 0.00 2.57
353 354 6.686484 AATAGTGTGGCATGTCATCCTATA 57.314 37.500 17.11 3.59 0.00 1.31
354 355 4.613925 AGTGTGGCATGTCATCCTATAG 57.386 45.455 1.89 0.00 0.00 1.31
355 356 4.226384 AGTGTGGCATGTCATCCTATAGA 58.774 43.478 1.89 0.00 0.00 1.98
356 357 4.655649 AGTGTGGCATGTCATCCTATAGAA 59.344 41.667 1.89 0.00 0.00 2.10
357 358 5.309020 AGTGTGGCATGTCATCCTATAGAAT 59.691 40.000 1.89 0.00 0.00 2.40
358 359 6.000219 GTGTGGCATGTCATCCTATAGAATT 59.000 40.000 1.89 0.00 0.00 2.17
359 360 7.016563 AGTGTGGCATGTCATCCTATAGAATTA 59.983 37.037 1.89 0.00 0.00 1.40
360 361 7.332926 GTGTGGCATGTCATCCTATAGAATTAG 59.667 40.741 1.89 0.00 0.00 1.73
361 362 7.016563 TGTGGCATGTCATCCTATAGAATTAGT 59.983 37.037 1.89 0.00 0.00 2.24
362 363 8.531982 GTGGCATGTCATCCTATAGAATTAGTA 58.468 37.037 1.89 0.00 0.00 1.82
363 364 9.271921 TGGCATGTCATCCTATAGAATTAGTAT 57.728 33.333 0.00 0.00 0.00 2.12
364 365 9.539825 GGCATGTCATCCTATAGAATTAGTATG 57.460 37.037 0.00 0.00 0.00 2.39
365 366 9.539825 GCATGTCATCCTATAGAATTAGTATGG 57.460 37.037 0.00 0.00 0.00 2.74
383 384 9.932207 TTAGTATGGACTTTTAATCGTTGAAGA 57.068 29.630 0.00 0.00 37.10 2.87
384 385 8.842358 AGTATGGACTTTTAATCGTTGAAGAA 57.158 30.769 0.00 0.00 28.61 2.52
385 386 9.280174 AGTATGGACTTTTAATCGTTGAAGAAA 57.720 29.630 0.00 0.00 28.61 2.52
386 387 9.887406 GTATGGACTTTTAATCGTTGAAGAAAA 57.113 29.630 0.00 0.00 0.00 2.29
388 389 8.623310 TGGACTTTTAATCGTTGAAGAAAAAC 57.377 30.769 0.00 0.00 0.00 2.43
389 390 8.244802 TGGACTTTTAATCGTTGAAGAAAAACA 58.755 29.630 0.00 0.00 0.00 2.83
390 391 9.244799 GGACTTTTAATCGTTGAAGAAAAACAT 57.755 29.630 0.00 0.00 0.00 2.71
394 395 8.429739 TTTAATCGTTGAAGAAAAACATAGCG 57.570 30.769 0.00 0.00 0.00 4.26
395 396 4.398549 TCGTTGAAGAAAAACATAGCGG 57.601 40.909 0.00 0.00 0.00 5.52
396 397 3.810941 TCGTTGAAGAAAAACATAGCGGT 59.189 39.130 0.00 0.00 0.00 5.68
397 398 4.989797 TCGTTGAAGAAAAACATAGCGGTA 59.010 37.500 0.00 0.00 0.00 4.02
398 399 5.640357 TCGTTGAAGAAAAACATAGCGGTAT 59.360 36.000 0.16 0.16 0.00 2.73
399 400 6.148150 TCGTTGAAGAAAAACATAGCGGTATT 59.852 34.615 3.95 0.00 0.00 1.89
400 401 6.464834 CGTTGAAGAAAAACATAGCGGTATTC 59.535 38.462 3.95 0.56 0.00 1.75
401 402 7.302524 GTTGAAGAAAAACATAGCGGTATTCA 58.697 34.615 3.95 1.80 0.00 2.57
402 403 6.837992 TGAAGAAAAACATAGCGGTATTCAC 58.162 36.000 3.95 0.92 0.00 3.18
403 404 6.428465 TGAAGAAAAACATAGCGGTATTCACA 59.572 34.615 3.95 3.27 0.00 3.58
404 405 7.120579 TGAAGAAAAACATAGCGGTATTCACAT 59.879 33.333 3.95 0.00 0.00 3.21
405 406 6.785191 AGAAAAACATAGCGGTATTCACATG 58.215 36.000 3.95 0.00 0.00 3.21
406 407 6.597672 AGAAAAACATAGCGGTATTCACATGA 59.402 34.615 3.95 0.00 0.00 3.07
407 408 5.991328 AAACATAGCGGTATTCACATGAG 57.009 39.130 3.95 0.00 0.00 2.90
408 409 3.995199 ACATAGCGGTATTCACATGAGG 58.005 45.455 3.95 0.00 0.00 3.86
409 410 3.388024 ACATAGCGGTATTCACATGAGGT 59.612 43.478 3.95 0.00 0.00 3.85
410 411 4.141711 ACATAGCGGTATTCACATGAGGTT 60.142 41.667 3.95 0.00 0.00 3.50
411 412 2.632377 AGCGGTATTCACATGAGGTTG 58.368 47.619 0.00 0.00 0.00 3.77
412 413 1.670811 GCGGTATTCACATGAGGTTGG 59.329 52.381 0.00 0.00 0.00 3.77
413 414 2.679639 GCGGTATTCACATGAGGTTGGA 60.680 50.000 0.00 0.00 0.00 3.53
414 415 3.198068 CGGTATTCACATGAGGTTGGAG 58.802 50.000 0.00 0.00 0.00 3.86
415 416 3.369471 CGGTATTCACATGAGGTTGGAGT 60.369 47.826 0.00 0.00 0.00 3.85
416 417 3.941483 GGTATTCACATGAGGTTGGAGTG 59.059 47.826 0.00 0.00 0.00 3.51
417 418 2.566833 TTCACATGAGGTTGGAGTGG 57.433 50.000 0.00 0.00 0.00 4.00
418 419 1.728323 TCACATGAGGTTGGAGTGGA 58.272 50.000 0.00 0.00 0.00 4.02
419 420 1.347707 TCACATGAGGTTGGAGTGGAC 59.652 52.381 0.00 0.00 0.00 4.02
420 421 1.349026 CACATGAGGTTGGAGTGGACT 59.651 52.381 0.00 0.00 0.00 3.85
421 422 2.567169 CACATGAGGTTGGAGTGGACTA 59.433 50.000 0.00 0.00 0.00 2.59
422 423 3.007940 CACATGAGGTTGGAGTGGACTAA 59.992 47.826 0.00 0.00 0.00 2.24
423 424 3.650942 ACATGAGGTTGGAGTGGACTAAA 59.349 43.478 0.00 0.00 0.00 1.85
424 425 4.104102 ACATGAGGTTGGAGTGGACTAAAA 59.896 41.667 0.00 0.00 0.00 1.52
425 426 4.993705 TGAGGTTGGAGTGGACTAAAAT 57.006 40.909 0.00 0.00 0.00 1.82
426 427 5.319043 TGAGGTTGGAGTGGACTAAAATT 57.681 39.130 0.00 0.00 0.00 1.82
427 428 5.701224 TGAGGTTGGAGTGGACTAAAATTT 58.299 37.500 0.00 0.00 0.00 1.82
428 429 6.843752 TGAGGTTGGAGTGGACTAAAATTTA 58.156 36.000 0.00 0.00 0.00 1.40
429 430 6.713450 TGAGGTTGGAGTGGACTAAAATTTAC 59.287 38.462 0.00 0.00 0.00 2.01
430 431 6.849151 AGGTTGGAGTGGACTAAAATTTACT 58.151 36.000 0.00 0.00 0.00 2.24
431 432 7.981142 AGGTTGGAGTGGACTAAAATTTACTA 58.019 34.615 0.00 0.00 0.00 1.82
432 433 8.612145 AGGTTGGAGTGGACTAAAATTTACTAT 58.388 33.333 0.00 0.00 0.00 2.12
433 434 9.239551 GGTTGGAGTGGACTAAAATTTACTATT 57.760 33.333 0.00 0.00 0.00 1.73
435 436 9.802039 TTGGAGTGGACTAAAATTTACTATTGT 57.198 29.630 0.00 0.00 0.00 2.71
503 504 9.839817 TTATAATCCTACGAATCAAACAATCCA 57.160 29.630 0.00 0.00 0.00 3.41
504 505 6.436843 AATCCTACGAATCAAACAATCCAC 57.563 37.500 0.00 0.00 0.00 4.02
505 506 4.900684 TCCTACGAATCAAACAATCCACA 58.099 39.130 0.00 0.00 0.00 4.17
506 507 5.496556 TCCTACGAATCAAACAATCCACAT 58.503 37.500 0.00 0.00 0.00 3.21
507 508 6.645306 TCCTACGAATCAAACAATCCACATA 58.355 36.000 0.00 0.00 0.00 2.29
508 509 7.106890 TCCTACGAATCAAACAATCCACATAA 58.893 34.615 0.00 0.00 0.00 1.90
509 510 7.608376 TCCTACGAATCAAACAATCCACATAAA 59.392 33.333 0.00 0.00 0.00 1.40
510 511 8.240682 CCTACGAATCAAACAATCCACATAAAA 58.759 33.333 0.00 0.00 0.00 1.52
511 512 9.619316 CTACGAATCAAACAATCCACATAAAAA 57.381 29.630 0.00 0.00 0.00 1.94
571 572 8.940397 TTATTCTTTTGAATCAAAGAGGTCCT 57.060 30.769 8.51 0.00 45.26 3.85
572 573 7.846101 ATTCTTTTGAATCAAAGAGGTCCTT 57.154 32.000 8.51 0.00 45.26 3.36
573 574 8.940397 ATTCTTTTGAATCAAAGAGGTCCTTA 57.060 30.769 8.51 0.00 45.26 2.69
574 575 8.760980 TTCTTTTGAATCAAAGAGGTCCTTAA 57.239 30.769 8.51 0.00 34.72 1.85
575 576 8.940397 TCTTTTGAATCAAAGAGGTCCTTAAT 57.060 30.769 8.51 0.00 34.72 1.40
576 577 9.367160 TCTTTTGAATCAAAGAGGTCCTTAATT 57.633 29.630 8.51 0.00 34.72 1.40
577 578 9.987272 CTTTTGAATCAAAGAGGTCCTTAATTT 57.013 29.630 8.51 0.00 34.72 1.82
578 579 9.762933 TTTTGAATCAAAGAGGTCCTTAATTTG 57.237 29.630 8.51 14.54 34.72 2.32
579 580 8.477419 TTGAATCAAAGAGGTCCTTAATTTGT 57.523 30.769 17.78 6.55 34.00 2.83
580 581 8.477419 TGAATCAAAGAGGTCCTTAATTTGTT 57.523 30.769 17.78 13.51 34.00 2.83
581 582 9.581289 TGAATCAAAGAGGTCCTTAATTTGTTA 57.419 29.630 17.78 6.88 34.00 2.41
583 584 7.996098 TCAAAGAGGTCCTTAATTTGTTAGG 57.004 36.000 17.78 0.00 34.00 2.69
584 585 7.523415 TCAAAGAGGTCCTTAATTTGTTAGGT 58.477 34.615 17.78 0.00 34.00 3.08
585 586 7.664318 TCAAAGAGGTCCTTAATTTGTTAGGTC 59.336 37.037 17.78 0.00 34.00 3.85
586 587 6.697641 AGAGGTCCTTAATTTGTTAGGTCA 57.302 37.500 0.00 0.00 0.00 4.02
587 588 7.272144 AGAGGTCCTTAATTTGTTAGGTCAT 57.728 36.000 0.00 0.00 0.00 3.06
588 589 8.388656 AGAGGTCCTTAATTTGTTAGGTCATA 57.611 34.615 0.00 0.00 0.00 2.15
589 590 9.004231 AGAGGTCCTTAATTTGTTAGGTCATAT 57.996 33.333 0.00 0.00 0.00 1.78
590 591 8.980481 AGGTCCTTAATTTGTTAGGTCATATG 57.020 34.615 0.00 0.00 0.00 1.78
591 592 7.998964 AGGTCCTTAATTTGTTAGGTCATATGG 59.001 37.037 2.13 0.00 0.00 2.74
592 593 7.996644 GGTCCTTAATTTGTTAGGTCATATGGA 59.003 37.037 2.13 0.00 0.00 3.41
593 594 9.574516 GTCCTTAATTTGTTAGGTCATATGGAT 57.425 33.333 2.13 0.00 0.00 3.41
599 600 8.924511 ATTTGTTAGGTCATATGGATTAGTGG 57.075 34.615 2.13 0.00 0.00 4.00
600 601 7.684317 TTGTTAGGTCATATGGATTAGTGGA 57.316 36.000 2.13 0.00 0.00 4.02
601 602 7.684317 TGTTAGGTCATATGGATTAGTGGAA 57.316 36.000 2.13 0.00 0.00 3.53
602 603 8.096621 TGTTAGGTCATATGGATTAGTGGAAA 57.903 34.615 2.13 0.00 0.00 3.13
603 604 8.553153 TGTTAGGTCATATGGATTAGTGGAAAA 58.447 33.333 2.13 0.00 0.00 2.29
604 605 9.403583 GTTAGGTCATATGGATTAGTGGAAAAA 57.596 33.333 2.13 0.00 0.00 1.94
605 606 9.627123 TTAGGTCATATGGATTAGTGGAAAAAG 57.373 33.333 2.13 0.00 0.00 2.27
606 607 6.547510 AGGTCATATGGATTAGTGGAAAAAGC 59.452 38.462 2.13 0.00 0.00 3.51
607 608 6.547510 GGTCATATGGATTAGTGGAAAAAGCT 59.452 38.462 2.13 0.00 0.00 3.74
608 609 7.420800 GTCATATGGATTAGTGGAAAAAGCTG 58.579 38.462 2.13 0.00 0.00 4.24
609 610 7.283127 GTCATATGGATTAGTGGAAAAAGCTGA 59.717 37.037 2.13 0.00 0.00 4.26
610 611 7.833682 TCATATGGATTAGTGGAAAAAGCTGAA 59.166 33.333 2.13 0.00 0.00 3.02
611 612 5.964958 TGGATTAGTGGAAAAAGCTGAAG 57.035 39.130 0.00 0.00 0.00 3.02
612 613 5.385198 TGGATTAGTGGAAAAAGCTGAAGT 58.615 37.500 0.00 0.00 0.00 3.01
613 614 6.539173 TGGATTAGTGGAAAAAGCTGAAGTA 58.461 36.000 0.00 0.00 0.00 2.24
614 615 7.001674 TGGATTAGTGGAAAAAGCTGAAGTAA 58.998 34.615 0.00 0.00 0.00 2.24
615 616 7.669722 TGGATTAGTGGAAAAAGCTGAAGTAAT 59.330 33.333 0.00 0.00 0.00 1.89
616 617 9.174166 GGATTAGTGGAAAAAGCTGAAGTAATA 57.826 33.333 0.00 0.00 0.00 0.98
649 650 9.566530 TTTGAACCATACAAATATTGATGTTCG 57.433 29.630 0.00 0.00 33.25 3.95
650 651 8.275015 TGAACCATACAAATATTGATGTTCGT 57.725 30.769 0.00 0.00 0.00 3.85
651 652 8.180920 TGAACCATACAAATATTGATGTTCGTG 58.819 33.333 0.00 0.00 0.00 4.35
652 653 7.624360 ACCATACAAATATTGATGTTCGTGT 57.376 32.000 0.00 0.00 0.00 4.49
653 654 8.725405 ACCATACAAATATTGATGTTCGTGTA 57.275 30.769 0.00 0.00 0.00 2.90
654 655 8.609176 ACCATACAAATATTGATGTTCGTGTAC 58.391 33.333 0.00 0.00 0.00 2.90
655 656 8.608317 CCATACAAATATTGATGTTCGTGTACA 58.392 33.333 0.00 0.00 0.00 2.90
656 657 9.420966 CATACAAATATTGATGTTCGTGTACAC 57.579 33.333 16.32 16.32 0.00 2.90
657 658 7.667043 ACAAATATTGATGTTCGTGTACACT 57.333 32.000 23.01 4.35 0.00 3.55
658 659 7.739295 ACAAATATTGATGTTCGTGTACACTC 58.261 34.615 23.01 13.78 0.00 3.51
659 660 7.386573 ACAAATATTGATGTTCGTGTACACTCA 59.613 33.333 23.01 16.11 0.00 3.41
660 661 8.390354 CAAATATTGATGTTCGTGTACACTCAT 58.610 33.333 23.01 21.27 0.00 2.90
661 662 7.700322 ATATTGATGTTCGTGTACACTCATC 57.300 36.000 28.37 28.37 34.97 2.92
662 663 3.845178 TGATGTTCGTGTACACTCATCC 58.155 45.455 29.93 21.00 34.29 3.51
663 664 2.341318 TGTTCGTGTACACTCATCCG 57.659 50.000 23.01 9.52 0.00 4.18
664 665 1.610038 TGTTCGTGTACACTCATCCGT 59.390 47.619 23.01 0.00 0.00 4.69
665 666 2.813172 TGTTCGTGTACACTCATCCGTA 59.187 45.455 23.01 0.66 0.00 4.02
666 667 3.441222 TGTTCGTGTACACTCATCCGTAT 59.559 43.478 23.01 0.00 0.00 3.06
667 668 3.685836 TCGTGTACACTCATCCGTATG 57.314 47.619 23.01 4.34 0.00 2.39
668 669 3.272581 TCGTGTACACTCATCCGTATGA 58.727 45.455 23.01 6.62 39.87 2.15
674 675 4.730081 TCATCCGTATGAGCGCAC 57.270 55.556 11.47 3.13 37.20 5.34
675 676 1.813192 TCATCCGTATGAGCGCACA 59.187 52.632 10.65 10.65 37.20 4.57
676 677 0.527600 TCATCCGTATGAGCGCACAC 60.528 55.000 10.42 0.47 37.20 3.82
677 678 0.805711 CATCCGTATGAGCGCACACA 60.806 55.000 10.42 7.06 34.84 3.72
678 679 0.806102 ATCCGTATGAGCGCACACAC 60.806 55.000 10.42 8.12 0.00 3.82
679 680 1.736282 CCGTATGAGCGCACACACA 60.736 57.895 16.28 5.51 0.00 3.72
680 681 1.416049 CGTATGAGCGCACACACAC 59.584 57.895 16.28 10.69 0.00 3.82
681 682 1.416049 GTATGAGCGCACACACACG 59.584 57.895 10.42 0.00 0.00 4.49
682 683 1.006688 TATGAGCGCACACACACGT 60.007 52.632 10.42 0.00 0.00 4.49
683 684 0.598942 TATGAGCGCACACACACGTT 60.599 50.000 10.42 0.00 0.00 3.99
684 685 2.053116 GAGCGCACACACACGTTG 60.053 61.111 11.47 0.00 0.00 4.10
685 686 2.808958 GAGCGCACACACACGTTGT 61.809 57.895 11.47 0.00 39.97 3.32
686 687 1.484227 GAGCGCACACACACGTTGTA 61.484 55.000 11.47 0.00 35.67 2.41
687 688 0.878523 AGCGCACACACACGTTGTAT 60.879 50.000 11.47 0.00 35.67 2.29
688 689 0.721155 GCGCACACACACGTTGTATG 60.721 55.000 0.30 5.22 35.67 2.39
690 691 3.746108 CACACACACGTTGTATGCC 57.254 52.632 3.60 0.00 35.67 4.40
691 692 0.237235 CACACACACGTTGTATGCCC 59.763 55.000 3.60 0.00 35.67 5.36
692 693 1.225376 ACACACACGTTGTATGCCCG 61.225 55.000 3.60 0.00 35.67 6.13
693 694 0.946700 CACACACGTTGTATGCCCGA 60.947 55.000 3.60 0.00 35.67 5.14
694 695 0.669318 ACACACGTTGTATGCCCGAG 60.669 55.000 2.19 0.00 36.32 4.63
695 696 0.669318 CACACGTTGTATGCCCGAGT 60.669 55.000 0.00 0.00 0.00 4.18
696 697 0.389426 ACACGTTGTATGCCCGAGTC 60.389 55.000 0.00 0.00 0.00 3.36
697 698 1.153901 ACGTTGTATGCCCGAGTCG 60.154 57.895 5.29 5.29 0.00 4.18
698 699 1.138036 CGTTGTATGCCCGAGTCGA 59.862 57.895 15.64 0.00 0.00 4.20
699 700 1.138047 CGTTGTATGCCCGAGTCGAC 61.138 60.000 15.64 7.70 0.00 4.20
700 701 0.804933 GTTGTATGCCCGAGTCGACC 60.805 60.000 15.64 4.73 0.00 4.79
701 702 0.968901 TTGTATGCCCGAGTCGACCT 60.969 55.000 15.64 0.00 0.00 3.85
702 703 1.359475 GTATGCCCGAGTCGACCTC 59.641 63.158 15.64 8.35 36.80 3.85
703 704 1.077285 TATGCCCGAGTCGACCTCA 60.077 57.895 15.64 6.29 40.48 3.86
704 705 1.101635 TATGCCCGAGTCGACCTCAG 61.102 60.000 15.64 0.00 40.48 3.35
705 706 4.500116 GCCCGAGTCGACCTCAGC 62.500 72.222 15.64 7.22 40.48 4.26
706 707 2.752238 CCCGAGTCGACCTCAGCT 60.752 66.667 15.64 0.00 40.48 4.24
707 708 1.451567 CCCGAGTCGACCTCAGCTA 60.452 63.158 15.64 0.00 40.48 3.32
708 709 1.716826 CCCGAGTCGACCTCAGCTAC 61.717 65.000 15.64 0.00 40.48 3.58
709 710 1.716826 CCGAGTCGACCTCAGCTACC 61.717 65.000 15.64 0.00 40.48 3.18
710 711 1.025113 CGAGTCGACCTCAGCTACCA 61.025 60.000 13.01 0.00 40.48 3.25
711 712 0.452585 GAGTCGACCTCAGCTACCAC 59.547 60.000 13.01 0.00 40.17 4.16
712 713 0.966370 AGTCGACCTCAGCTACCACC 60.966 60.000 13.01 0.00 0.00 4.61
713 714 2.044555 TCGACCTCAGCTACCACCG 61.045 63.158 0.00 0.00 0.00 4.94
714 715 2.893398 GACCTCAGCTACCACCGG 59.107 66.667 0.00 0.00 0.00 5.28
715 716 1.681327 GACCTCAGCTACCACCGGA 60.681 63.158 9.46 0.00 0.00 5.14
716 717 1.946475 GACCTCAGCTACCACCGGAC 61.946 65.000 9.46 0.00 0.00 4.79
717 718 1.982395 CCTCAGCTACCACCGGACA 60.982 63.158 9.46 0.00 0.00 4.02
718 719 1.541310 CCTCAGCTACCACCGGACAA 61.541 60.000 9.46 0.00 0.00 3.18
719 720 0.320374 CTCAGCTACCACCGGACAAA 59.680 55.000 9.46 0.00 0.00 2.83
720 721 0.981183 TCAGCTACCACCGGACAAAT 59.019 50.000 9.46 0.00 0.00 2.32
721 722 2.167693 CTCAGCTACCACCGGACAAATA 59.832 50.000 9.46 0.00 0.00 1.40
722 723 2.167693 TCAGCTACCACCGGACAAATAG 59.832 50.000 9.46 3.51 0.00 1.73
723 724 1.134491 AGCTACCACCGGACAAATAGC 60.134 52.381 9.46 13.60 36.19 2.97
724 725 1.406341 GCTACCACCGGACAAATAGCA 60.406 52.381 9.46 0.00 36.03 3.49
725 726 2.277084 CTACCACCGGACAAATAGCAC 58.723 52.381 9.46 0.00 0.00 4.40
726 727 0.690762 ACCACCGGACAAATAGCACT 59.309 50.000 9.46 0.00 0.00 4.40
727 728 1.903860 ACCACCGGACAAATAGCACTA 59.096 47.619 9.46 0.00 0.00 2.74
730 731 3.945285 CCACCGGACAAATAGCACTAAAT 59.055 43.478 9.46 0.00 0.00 1.40
797 806 7.444183 CGTGATTCCCTAGCCTATTATTTTTGA 59.556 37.037 0.00 0.00 0.00 2.69
889 907 1.221840 CCTCCCACCCAATCAGACG 59.778 63.158 0.00 0.00 0.00 4.18
966 985 3.766691 GCCGAGGCAACCCGAGTA 61.767 66.667 9.58 0.00 41.49 2.59
967 986 2.183555 CCGAGGCAACCCGAGTAC 59.816 66.667 0.00 0.00 35.76 2.73
968 987 2.183555 CGAGGCAACCCGAGTACC 59.816 66.667 0.00 0.00 35.76 3.34
969 988 2.582978 GAGGCAACCCGAGTACCC 59.417 66.667 0.00 0.00 35.76 3.69
970 989 3.366739 GAGGCAACCCGAGTACCCG 62.367 68.421 0.00 0.00 35.76 5.28
971 990 3.384532 GGCAACCCGAGTACCCGA 61.385 66.667 0.00 0.00 0.00 5.14
1045 1663 4.019591 GTCATCATCATCCATCCTCATCCA 60.020 45.833 0.00 0.00 0.00 3.41
1102 1720 2.047655 TCCAATCACGACGTGGCC 60.048 61.111 26.55 0.00 33.87 5.36
1104 1722 1.216977 CCAATCACGACGTGGCCTA 59.783 57.895 26.55 8.84 33.87 3.93
1105 1723 0.179084 CCAATCACGACGTGGCCTAT 60.179 55.000 26.55 10.84 33.87 2.57
1123 1743 4.508124 GCCTATCGTCGTTTTGATTGATCT 59.492 41.667 0.00 0.00 0.00 2.75
1124 1744 5.006746 GCCTATCGTCGTTTTGATTGATCTT 59.993 40.000 0.00 0.00 0.00 2.40
1125 1745 6.200286 GCCTATCGTCGTTTTGATTGATCTTA 59.800 38.462 0.00 0.00 0.00 2.10
1256 1886 1.810030 GCTGGGGAACATCGTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
1265 1895 1.660167 ACATCGTCGTCTCCATCGTA 58.340 50.000 0.00 0.00 0.00 3.43
1385 2015 0.965866 TGCTCCTCCTGGTCAGTACG 60.966 60.000 0.00 0.00 34.23 3.67
1436 2076 1.992557 AGCCCCCTGTTTCAGTATCAA 59.007 47.619 0.00 0.00 0.00 2.57
1474 2114 4.090761 AGGATTCAACAAGCTTCACTCA 57.909 40.909 0.00 0.00 0.00 3.41
1485 2125 7.840342 ACAAGCTTCACTCAATCTTAGTATG 57.160 36.000 0.00 0.00 0.00 2.39
1492 2141 5.187772 TCACTCAATCTTAGTATGCTGTGGT 59.812 40.000 0.00 0.00 0.00 4.16
1494 2143 6.036517 CACTCAATCTTAGTATGCTGTGGTTC 59.963 42.308 0.00 0.00 0.00 3.62
1512 2161 6.660521 TGTGGTTCATTATTCAGCTTGATCTT 59.339 34.615 0.00 0.00 0.00 2.40
1518 2167 7.789026 TCATTATTCAGCTTGATCTTCTCAGA 58.211 34.615 0.00 0.00 34.68 3.27
1527 2176 6.039616 GCTTGATCTTCTCAGACGATTAGTT 58.960 40.000 0.00 0.00 34.68 2.24
1529 2178 7.064016 GCTTGATCTTCTCAGACGATTAGTTTT 59.936 37.037 0.00 0.00 34.68 2.43
1625 2277 1.625818 GGGAGCAAGAAACAGAGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
1798 2453 0.904649 TCATCGGCCAGAACATCAGT 59.095 50.000 2.24 0.00 0.00 3.41
1876 2531 2.876645 GTCGCGCTCTCCTTCGTG 60.877 66.667 5.56 0.00 37.53 4.35
2123 2778 0.250338 GAACAGAGCCAAGTTCCGGT 60.250 55.000 0.00 0.00 38.49 5.28
2143 2798 2.679716 GTGCTCCTCCAGGCCATT 59.320 61.111 5.01 0.00 34.44 3.16
2170 2825 2.664851 ACGGTCGTGTACGTCGGA 60.665 61.111 19.56 0.00 39.40 4.55
2200 2855 2.832201 GGCTACCTCGCCTACGGT 60.832 66.667 0.00 0.00 46.63 4.83
2320 2975 0.766752 TGATGATGCACCCGATCCAT 59.233 50.000 0.00 0.00 0.00 3.41
2605 3263 0.321653 TTTTCTTGCTCTCCGGCCTC 60.322 55.000 0.00 0.00 0.00 4.70
2632 3290 0.539518 CCGGTCATGGGATGTACACA 59.460 55.000 0.00 0.00 35.88 3.72
2711 3387 6.197096 GCACACACACAAAAGAGAGTAAATTG 59.803 38.462 0.00 0.00 0.00 2.32
2729 3405 8.184192 AGTAAATTGCCATCGAAATTAGTCAAG 58.816 33.333 0.00 0.00 0.00 3.02
2739 3417 6.435428 TCGAAATTAGTCAAGAAAAACCTGC 58.565 36.000 0.00 0.00 0.00 4.85
2797 3508 2.613506 CCTCCAAAACGGACACGGC 61.614 63.158 0.00 0.00 46.48 5.68
2800 3511 0.820074 TCCAAAACGGACACGGCATT 60.820 50.000 0.00 0.00 46.48 3.56
2805 3516 0.321210 AACGGACACGGCATTCATCA 60.321 50.000 0.00 0.00 46.48 3.07
2807 3518 0.740868 CGGACACGGCATTCATCACT 60.741 55.000 0.00 0.00 36.18 3.41
2811 3522 0.729116 CACGGCATTCATCACTGTCC 59.271 55.000 0.00 0.00 0.00 4.02
2812 3523 0.392998 ACGGCATTCATCACTGTCCC 60.393 55.000 0.00 0.00 0.00 4.46
2813 3524 0.107508 CGGCATTCATCACTGTCCCT 60.108 55.000 0.00 0.00 0.00 4.20
2814 3525 1.138859 CGGCATTCATCACTGTCCCTA 59.861 52.381 0.00 0.00 0.00 3.53
2820 3573 6.268566 GCATTCATCACTGTCCCTATTTTTC 58.731 40.000 0.00 0.00 0.00 2.29
2821 3574 6.489675 CATTCATCACTGTCCCTATTTTTCG 58.510 40.000 0.00 0.00 0.00 3.46
2823 3576 5.175859 TCATCACTGTCCCTATTTTTCGTC 58.824 41.667 0.00 0.00 0.00 4.20
2826 3579 3.933332 CACTGTCCCTATTTTTCGTCCTC 59.067 47.826 0.00 0.00 0.00 3.71
2828 3581 4.041198 ACTGTCCCTATTTTTCGTCCTCAA 59.959 41.667 0.00 0.00 0.00 3.02
2837 3590 2.526304 TTCGTCCTCAAGTCCACAAG 57.474 50.000 0.00 0.00 0.00 3.16
2838 3591 1.699730 TCGTCCTCAAGTCCACAAGA 58.300 50.000 0.00 0.00 0.00 3.02
2839 3592 1.340248 TCGTCCTCAAGTCCACAAGAC 59.660 52.381 0.00 0.00 46.71 3.01
2896 3652 7.962918 AGTGAAAATATTCAAATGCGACACTAC 59.037 33.333 0.00 0.00 46.66 2.73
2897 3653 7.748683 GTGAAAATATTCAAATGCGACACTACA 59.251 33.333 0.00 0.00 46.66 2.74
2909 3668 3.603770 GCGACACTACATCAAATGCAAAC 59.396 43.478 0.00 0.00 0.00 2.93
2918 3677 9.709495 ACTACATCAAATGCAAACATTACAATT 57.291 25.926 0.00 0.00 45.90 2.32
2925 3684 9.757859 CAAATGCAAACATTACAATTACAATCC 57.242 29.630 0.00 0.00 45.90 3.01
2926 3685 9.499479 AAATGCAAACATTACAATTACAATCCA 57.501 25.926 0.00 0.00 45.90 3.41
2927 3686 9.499479 AATGCAAACATTACAATTACAATCCAA 57.501 25.926 0.00 0.00 44.78 3.53
2928 3687 8.304202 TGCAAACATTACAATTACAATCCAAC 57.696 30.769 0.00 0.00 0.00 3.77
2930 3689 9.632807 GCAAACATTACAATTACAATCCAACTA 57.367 29.630 0.00 0.00 0.00 2.24
2963 3734 5.469373 TGAATTCAACTCGCACATATGTC 57.531 39.130 5.45 0.43 0.00 3.06
2993 3770 5.069914 TGTCCCTTTTAAGCGCTCATAGATA 59.930 40.000 12.06 0.00 0.00 1.98
3088 3865 5.704978 TCATCAAATGTGACCGAATTCTGAA 59.295 36.000 3.66 0.00 36.31 3.02
3090 3867 6.384258 TCAAATGTGACCGAATTCTGAAAA 57.616 33.333 3.66 0.00 0.00 2.29
3091 3868 6.800543 TCAAATGTGACCGAATTCTGAAAAA 58.199 32.000 3.66 0.00 0.00 1.94
3144 3921 7.174413 TCAAATTTCAGACCTCCAACATCATA 58.826 34.615 0.00 0.00 0.00 2.15
3154 3931 5.672194 ACCTCCAACATCATATTAACCCTCT 59.328 40.000 0.00 0.00 0.00 3.69
3179 3956 2.549329 TCCACGATCATATTGTGCATGC 59.451 45.455 11.82 11.82 42.20 4.06
3235 4013 3.071312 TGGGATCCCATATTTTTGCATGC 59.929 43.478 30.62 11.82 41.89 4.06
3284 4063 1.153086 CTCCAAATGCCCTCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
3299 4085 3.432378 TCTCCGGAGTCTTTCTAGCTTT 58.568 45.455 30.17 0.00 0.00 3.51
3302 4088 4.566987 TCCGGAGTCTTTCTAGCTTTTTC 58.433 43.478 0.00 0.00 0.00 2.29
3305 4091 5.120986 CCGGAGTCTTTCTAGCTTTTTCTTC 59.879 44.000 0.00 0.00 0.00 2.87
3328 4115 3.879295 TCTTTGGACAAAGTGAGCTCTTG 59.121 43.478 20.53 13.50 45.88 3.02
3349 4137 4.825422 TGTCTGAACAATTAGCTCAGAGG 58.175 43.478 11.58 0.00 46.91 3.69
3367 4155 3.083293 GAGGTAGTCTTGACGAAGGTCT 58.917 50.000 0.00 0.00 43.79 3.85
3407 4196 6.731292 ATGTCAACCAGATAGTAGCACATA 57.269 37.500 0.00 0.00 0.00 2.29
3430 4219 5.801350 TTGTAGTCATGCTCATTAACAGC 57.199 39.130 1.87 1.87 37.40 4.40
3536 4329 3.871775 CATGCCAAAGAAAGCGTGT 57.128 47.368 0.00 0.00 40.40 4.49
3538 4331 0.238289 ATGCCAAAGAAAGCGTGTCG 59.762 50.000 0.00 0.00 0.00 4.35
3548 4341 0.737715 AAGCGTGTCGAATCCAGAGC 60.738 55.000 0.00 0.00 0.00 4.09
3557 4350 2.887783 TCGAATCCAGAGCTCCTATGAC 59.112 50.000 10.93 0.00 0.00 3.06
3579 4378 6.092955 ACACTGCTTCAAAAATGATGATGT 57.907 33.333 0.00 0.00 0.00 3.06
3605 4408 2.712384 TCATGGCCCTGATATTACCCA 58.288 47.619 6.63 0.00 0.00 4.51
3622 4426 1.730501 CCATGTAGAGCATATGGGCG 58.269 55.000 4.56 0.00 41.16 6.13
3664 4468 1.811941 GCAATCAAGGGATCCGAGGAC 60.812 57.143 5.45 0.00 31.88 3.85
3669 4473 0.688087 AAGGGATCCGAGGACACCTC 60.688 60.000 14.41 7.65 46.44 3.85
3698 4502 0.693622 TTGCTTCCAACATCGGGGTA 59.306 50.000 0.00 0.00 0.00 3.69
3707 4511 0.895530 ACATCGGGGTATGCGATAGG 59.104 55.000 0.00 0.00 0.00 2.57
3714 4518 1.270678 GGGTATGCGATAGGTGGTTCC 60.271 57.143 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.470047 AAGAGAAGACGAGCCTTTTCTTA 57.530 39.130 15.25 0.00 42.29 2.10
4 5 6.729391 AATTAAGAGAAGACGAGCCTTTTC 57.271 37.500 0.00 0.00 0.00 2.29
7 8 7.036829 GTCTTAATTAAGAGAAGACGAGCCTT 58.963 38.462 24.92 0.00 42.48 4.35
8 9 6.566141 GTCTTAATTAAGAGAAGACGAGCCT 58.434 40.000 24.92 0.00 42.48 4.58
9 10 6.815672 GTCTTAATTAAGAGAAGACGAGCC 57.184 41.667 24.92 8.37 42.48 4.70
29 30 9.846248 GACAATTATTGCTAAGAAAACATGTCT 57.154 29.630 4.68 0.00 0.00 3.41
30 31 9.846248 AGACAATTATTGCTAAGAAAACATGTC 57.154 29.630 4.68 0.00 33.11 3.06
31 32 9.846248 GAGACAATTATTGCTAAGAAAACATGT 57.154 29.630 4.68 0.00 0.00 3.21
32 33 9.844790 TGAGACAATTATTGCTAAGAAAACATG 57.155 29.630 4.68 0.00 0.00 3.21
33 34 9.846248 GTGAGACAATTATTGCTAAGAAAACAT 57.154 29.630 4.68 0.00 0.00 2.71
34 35 8.296713 GGTGAGACAATTATTGCTAAGAAAACA 58.703 33.333 4.68 0.00 0.00 2.83
35 36 8.296713 TGGTGAGACAATTATTGCTAAGAAAAC 58.703 33.333 4.68 0.00 0.00 2.43
36 37 8.402798 TGGTGAGACAATTATTGCTAAGAAAA 57.597 30.769 4.68 0.00 0.00 2.29
37 38 7.994425 TGGTGAGACAATTATTGCTAAGAAA 57.006 32.000 4.68 0.00 0.00 2.52
38 39 9.851686 ATATGGTGAGACAATTATTGCTAAGAA 57.148 29.630 4.68 0.00 0.00 2.52
92 93 9.920946 ATGTACAATGGATTATTTGTTAGTCCT 57.079 29.630 0.00 0.00 37.54 3.85
124 125 9.787435 AGTACAGTGGTTGATAAGACAATAAAA 57.213 29.630 0.00 0.00 32.36 1.52
125 126 9.431887 GAGTACAGTGGTTGATAAGACAATAAA 57.568 33.333 0.00 0.00 32.36 1.40
126 127 8.812972 AGAGTACAGTGGTTGATAAGACAATAA 58.187 33.333 0.00 0.00 32.36 1.40
127 128 8.362464 AGAGTACAGTGGTTGATAAGACAATA 57.638 34.615 0.00 0.00 32.36 1.90
128 129 7.246171 AGAGTACAGTGGTTGATAAGACAAT 57.754 36.000 0.00 0.00 32.36 2.71
129 130 6.665992 AGAGTACAGTGGTTGATAAGACAA 57.334 37.500 0.00 0.00 0.00 3.18
130 131 6.493802 AGAAGAGTACAGTGGTTGATAAGACA 59.506 38.462 0.00 0.00 0.00 3.41
131 132 6.926313 AGAAGAGTACAGTGGTTGATAAGAC 58.074 40.000 0.00 0.00 0.00 3.01
132 133 8.645814 TTAGAAGAGTACAGTGGTTGATAAGA 57.354 34.615 0.00 0.00 0.00 2.10
133 134 9.706691 TTTTAGAAGAGTACAGTGGTTGATAAG 57.293 33.333 0.00 0.00 0.00 1.73
159 160 4.102367 AGGGCATGTACAATGGTTGTTTTT 59.898 37.500 0.00 0.00 42.22 1.94
160 161 3.645687 AGGGCATGTACAATGGTTGTTTT 59.354 39.130 0.00 0.00 42.22 2.43
161 162 3.238597 AGGGCATGTACAATGGTTGTTT 58.761 40.909 0.00 0.00 42.22 2.83
162 163 2.825532 GAGGGCATGTACAATGGTTGTT 59.174 45.455 0.00 0.00 42.22 2.83
164 165 2.164219 GTGAGGGCATGTACAATGGTTG 59.836 50.000 0.00 0.00 0.00 3.77
165 166 2.224992 TGTGAGGGCATGTACAATGGTT 60.225 45.455 0.00 0.00 0.00 3.67
166 167 1.354031 TGTGAGGGCATGTACAATGGT 59.646 47.619 0.00 0.00 0.00 3.55
167 168 2.127271 TGTGAGGGCATGTACAATGG 57.873 50.000 0.00 0.00 0.00 3.16
168 169 4.158209 TGAATTGTGAGGGCATGTACAATG 59.842 41.667 0.00 0.12 41.43 2.82
169 170 4.158394 GTGAATTGTGAGGGCATGTACAAT 59.842 41.667 0.00 5.78 43.40 2.71
170 171 3.505680 GTGAATTGTGAGGGCATGTACAA 59.494 43.478 0.00 1.82 37.43 2.41
171 172 3.081061 GTGAATTGTGAGGGCATGTACA 58.919 45.455 0.00 0.00 0.00 2.90
172 173 3.081061 TGTGAATTGTGAGGGCATGTAC 58.919 45.455 0.00 0.00 0.00 2.90
173 174 3.431673 TGTGAATTGTGAGGGCATGTA 57.568 42.857 0.00 0.00 0.00 2.29
174 175 2.291209 TGTGAATTGTGAGGGCATGT 57.709 45.000 0.00 0.00 0.00 3.21
175 176 3.663995 TTTGTGAATTGTGAGGGCATG 57.336 42.857 0.00 0.00 0.00 4.06
176 177 3.833650 TCATTTGTGAATTGTGAGGGCAT 59.166 39.130 0.00 0.00 0.00 4.40
177 178 3.229293 TCATTTGTGAATTGTGAGGGCA 58.771 40.909 0.00 0.00 0.00 5.36
178 179 3.940209 TCATTTGTGAATTGTGAGGGC 57.060 42.857 0.00 0.00 0.00 5.19
179 180 6.276832 AGAATCATTTGTGAATTGTGAGGG 57.723 37.500 0.00 0.00 0.00 4.30
180 181 7.434307 GCATAGAATCATTTGTGAATTGTGAGG 59.566 37.037 0.00 0.00 0.00 3.86
181 182 7.971722 TGCATAGAATCATTTGTGAATTGTGAG 59.028 33.333 0.00 0.00 0.00 3.51
182 183 7.828712 TGCATAGAATCATTTGTGAATTGTGA 58.171 30.769 0.00 0.00 0.00 3.58
183 184 7.758076 ACTGCATAGAATCATTTGTGAATTGTG 59.242 33.333 0.00 0.00 0.00 3.33
184 185 7.758076 CACTGCATAGAATCATTTGTGAATTGT 59.242 33.333 0.00 0.00 0.00 2.71
185 186 7.971722 TCACTGCATAGAATCATTTGTGAATTG 59.028 33.333 0.00 0.00 0.00 2.32
186 187 8.058667 TCACTGCATAGAATCATTTGTGAATT 57.941 30.769 0.00 0.00 0.00 2.17
187 188 7.634671 TCACTGCATAGAATCATTTGTGAAT 57.365 32.000 0.00 0.00 0.00 2.57
188 189 7.175467 ACTTCACTGCATAGAATCATTTGTGAA 59.825 33.333 8.75 8.75 38.86 3.18
189 190 6.656270 ACTTCACTGCATAGAATCATTTGTGA 59.344 34.615 1.95 0.00 0.00 3.58
190 191 6.849502 ACTTCACTGCATAGAATCATTTGTG 58.150 36.000 1.95 0.00 0.00 3.33
191 192 7.458409 AACTTCACTGCATAGAATCATTTGT 57.542 32.000 1.95 0.00 0.00 2.83
194 195 8.627403 CCATAAACTTCACTGCATAGAATCATT 58.373 33.333 1.95 1.85 0.00 2.57
195 196 7.776969 ACCATAAACTTCACTGCATAGAATCAT 59.223 33.333 1.95 0.00 0.00 2.45
196 197 7.112122 ACCATAAACTTCACTGCATAGAATCA 58.888 34.615 1.95 0.00 0.00 2.57
197 198 7.559590 ACCATAAACTTCACTGCATAGAATC 57.440 36.000 1.95 0.00 0.00 2.52
198 199 8.893727 GTTACCATAAACTTCACTGCATAGAAT 58.106 33.333 1.95 0.00 0.00 2.40
199 200 7.880713 TGTTACCATAAACTTCACTGCATAGAA 59.119 33.333 0.00 0.00 0.00 2.10
200 201 7.390823 TGTTACCATAAACTTCACTGCATAGA 58.609 34.615 0.00 0.00 0.00 1.98
201 202 7.609760 TGTTACCATAAACTTCACTGCATAG 57.390 36.000 0.00 0.00 0.00 2.23
202 203 8.046708 AGATGTTACCATAAACTTCACTGCATA 58.953 33.333 0.00 0.00 36.49 3.14
203 204 6.886459 AGATGTTACCATAAACTTCACTGCAT 59.114 34.615 0.00 0.00 36.49 3.96
204 205 6.149308 CAGATGTTACCATAAACTTCACTGCA 59.851 38.462 0.00 0.00 36.49 4.41
205 206 6.403636 CCAGATGTTACCATAAACTTCACTGC 60.404 42.308 0.00 0.00 36.49 4.40
206 207 6.655003 ACCAGATGTTACCATAAACTTCACTG 59.345 38.462 0.00 0.00 36.49 3.66
207 208 6.779860 ACCAGATGTTACCATAAACTTCACT 58.220 36.000 5.70 0.00 36.49 3.41
208 209 7.448748 AACCAGATGTTACCATAAACTTCAC 57.551 36.000 5.70 0.00 36.49 3.18
209 210 9.747898 ATAAACCAGATGTTACCATAAACTTCA 57.252 29.630 5.70 0.00 35.67 3.02
211 212 9.747898 TGATAAACCAGATGTTACCATAAACTT 57.252 29.630 0.00 0.00 35.67 2.66
212 213 9.920946 ATGATAAACCAGATGTTACCATAAACT 57.079 29.630 0.00 0.00 35.67 2.66
217 218 9.920946 AAGTTATGATAAACCAGATGTTACCAT 57.079 29.630 0.00 0.00 35.67 3.55
218 219 9.747898 AAAGTTATGATAAACCAGATGTTACCA 57.252 29.630 0.00 0.00 35.67 3.25
252 253 9.927668 ACCAACTAAAATCCTCAAACAAATATG 57.072 29.630 0.00 0.00 0.00 1.78
253 254 9.927668 CACCAACTAAAATCCTCAAACAAATAT 57.072 29.630 0.00 0.00 0.00 1.28
254 255 7.870445 GCACCAACTAAAATCCTCAAACAAATA 59.130 33.333 0.00 0.00 0.00 1.40
255 256 6.705825 GCACCAACTAAAATCCTCAAACAAAT 59.294 34.615 0.00 0.00 0.00 2.32
256 257 6.045955 GCACCAACTAAAATCCTCAAACAAA 58.954 36.000 0.00 0.00 0.00 2.83
257 258 5.452636 GGCACCAACTAAAATCCTCAAACAA 60.453 40.000 0.00 0.00 0.00 2.83
258 259 4.038642 GGCACCAACTAAAATCCTCAAACA 59.961 41.667 0.00 0.00 0.00 2.83
259 260 4.280929 AGGCACCAACTAAAATCCTCAAAC 59.719 41.667 0.00 0.00 0.00 2.93
260 261 4.479158 AGGCACCAACTAAAATCCTCAAA 58.521 39.130 0.00 0.00 0.00 2.69
261 262 4.079253 GAGGCACCAACTAAAATCCTCAA 58.921 43.478 0.00 0.00 38.69 3.02
262 263 3.330701 AGAGGCACCAACTAAAATCCTCA 59.669 43.478 7.94 0.00 40.66 3.86
263 264 3.956744 AGAGGCACCAACTAAAATCCTC 58.043 45.455 0.00 0.00 39.02 3.71
264 265 4.388577 AAGAGGCACCAACTAAAATCCT 57.611 40.909 0.00 0.00 0.00 3.24
265 266 4.522789 TCAAAGAGGCACCAACTAAAATCC 59.477 41.667 0.00 0.00 0.00 3.01
266 267 5.705609 TCAAAGAGGCACCAACTAAAATC 57.294 39.130 0.00 0.00 0.00 2.17
267 268 6.670695 AATCAAAGAGGCACCAACTAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
268 269 7.001674 TCTAATCAAAGAGGCACCAACTAAAA 58.998 34.615 0.00 0.00 0.00 1.52
269 270 6.539173 TCTAATCAAAGAGGCACCAACTAAA 58.461 36.000 0.00 0.00 0.00 1.85
270 271 6.121776 TCTAATCAAAGAGGCACCAACTAA 57.878 37.500 0.00 0.00 0.00 2.24
271 272 5.755409 TCTAATCAAAGAGGCACCAACTA 57.245 39.130 0.00 0.00 0.00 2.24
272 273 4.640771 TCTAATCAAAGAGGCACCAACT 57.359 40.909 0.00 0.00 0.00 3.16
273 274 5.473504 TCTTTCTAATCAAAGAGGCACCAAC 59.526 40.000 0.00 0.00 37.45 3.77
274 275 5.630121 TCTTTCTAATCAAAGAGGCACCAA 58.370 37.500 0.00 0.00 37.45 3.67
275 276 5.241403 TCTTTCTAATCAAAGAGGCACCA 57.759 39.130 0.00 0.00 37.45 4.17
276 277 6.765915 AATCTTTCTAATCAAAGAGGCACC 57.234 37.500 2.39 0.00 43.90 5.01
277 278 7.597386 ACAAATCTTTCTAATCAAAGAGGCAC 58.403 34.615 2.39 0.00 43.90 5.01
278 279 7.765695 ACAAATCTTTCTAATCAAAGAGGCA 57.234 32.000 2.39 0.00 43.90 4.75
327 328 5.018809 AGGATGACATGCCACACTATTTTT 58.981 37.500 2.94 0.00 0.00 1.94
328 329 4.603131 AGGATGACATGCCACACTATTTT 58.397 39.130 2.94 0.00 0.00 1.82
329 330 4.240881 AGGATGACATGCCACACTATTT 57.759 40.909 2.94 0.00 0.00 1.40
330 331 3.939740 AGGATGACATGCCACACTATT 57.060 42.857 2.94 0.00 0.00 1.73
331 332 6.019108 TCTATAGGATGACATGCCACACTAT 58.981 40.000 2.94 10.63 0.00 2.12
332 333 5.393866 TCTATAGGATGACATGCCACACTA 58.606 41.667 2.94 0.00 0.00 2.74
333 334 4.226384 TCTATAGGATGACATGCCACACT 58.774 43.478 2.94 0.00 0.00 3.55
334 335 4.607293 TCTATAGGATGACATGCCACAC 57.393 45.455 2.94 0.00 0.00 3.82
335 336 5.830799 ATTCTATAGGATGACATGCCACA 57.169 39.130 2.94 0.00 0.00 4.17
336 337 7.390027 ACTAATTCTATAGGATGACATGCCAC 58.610 38.462 2.94 0.00 0.00 5.01
337 338 7.559335 ACTAATTCTATAGGATGACATGCCA 57.441 36.000 2.94 0.00 0.00 4.92
338 339 9.539825 CATACTAATTCTATAGGATGACATGCC 57.460 37.037 2.94 0.00 43.98 4.40
339 340 9.539825 CCATACTAATTCTATAGGATGACATGC 57.460 37.037 7.89 0.00 43.98 4.06
357 358 9.932207 TCTTCAACGATTAAAAGTCCATACTAA 57.068 29.630 0.00 0.00 33.75 2.24
358 359 9.932207 TTCTTCAACGATTAAAAGTCCATACTA 57.068 29.630 0.00 0.00 33.75 1.82
359 360 8.842358 TTCTTCAACGATTAAAAGTCCATACT 57.158 30.769 0.00 0.00 37.65 2.12
360 361 9.887406 TTTTCTTCAACGATTAAAAGTCCATAC 57.113 29.630 0.00 0.00 0.00 2.39
362 363 9.244799 GTTTTTCTTCAACGATTAAAAGTCCAT 57.755 29.630 0.00 0.00 0.00 3.41
363 364 8.244802 TGTTTTTCTTCAACGATTAAAAGTCCA 58.755 29.630 0.00 0.00 0.00 4.02
364 365 8.623310 TGTTTTTCTTCAACGATTAAAAGTCC 57.377 30.769 0.00 0.00 0.00 3.85
368 369 8.897809 CGCTATGTTTTTCTTCAACGATTAAAA 58.102 29.630 0.00 0.00 0.00 1.52
369 370 7.535940 CCGCTATGTTTTTCTTCAACGATTAAA 59.464 33.333 0.00 0.00 0.00 1.52
370 371 7.018826 CCGCTATGTTTTTCTTCAACGATTAA 58.981 34.615 0.00 0.00 0.00 1.40
371 372 6.148150 ACCGCTATGTTTTTCTTCAACGATTA 59.852 34.615 0.00 0.00 0.00 1.75
372 373 5.048991 ACCGCTATGTTTTTCTTCAACGATT 60.049 36.000 0.00 0.00 0.00 3.34
373 374 4.454504 ACCGCTATGTTTTTCTTCAACGAT 59.545 37.500 0.00 0.00 0.00 3.73
374 375 3.810941 ACCGCTATGTTTTTCTTCAACGA 59.189 39.130 0.00 0.00 0.00 3.85
375 376 4.141855 ACCGCTATGTTTTTCTTCAACG 57.858 40.909 0.00 0.00 0.00 4.10
376 377 7.270579 GTGAATACCGCTATGTTTTTCTTCAAC 59.729 37.037 0.00 0.00 0.00 3.18
377 378 7.041030 TGTGAATACCGCTATGTTTTTCTTCAA 60.041 33.333 0.00 0.00 0.00 2.69
378 379 6.428465 TGTGAATACCGCTATGTTTTTCTTCA 59.572 34.615 0.00 0.00 0.00 3.02
379 380 6.837992 TGTGAATACCGCTATGTTTTTCTTC 58.162 36.000 0.00 0.00 0.00 2.87
380 381 6.811253 TGTGAATACCGCTATGTTTTTCTT 57.189 33.333 0.00 0.00 0.00 2.52
381 382 6.597672 TCATGTGAATACCGCTATGTTTTTCT 59.402 34.615 0.00 0.00 0.00 2.52
382 383 6.781138 TCATGTGAATACCGCTATGTTTTTC 58.219 36.000 0.00 0.00 0.00 2.29
383 384 6.183360 CCTCATGTGAATACCGCTATGTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
384 385 5.296780 CCTCATGTGAATACCGCTATGTTTT 59.703 40.000 0.00 0.00 0.00 2.43
385 386 4.816385 CCTCATGTGAATACCGCTATGTTT 59.184 41.667 0.00 0.00 0.00 2.83
386 387 4.141711 ACCTCATGTGAATACCGCTATGTT 60.142 41.667 0.00 0.00 0.00 2.71
387 388 3.388024 ACCTCATGTGAATACCGCTATGT 59.612 43.478 0.00 0.00 0.00 2.29
388 389 3.995199 ACCTCATGTGAATACCGCTATG 58.005 45.455 0.00 0.00 0.00 2.23
389 390 4.380531 CAACCTCATGTGAATACCGCTAT 58.619 43.478 0.00 0.00 0.00 2.97
390 391 3.431626 CCAACCTCATGTGAATACCGCTA 60.432 47.826 0.00 0.00 0.00 4.26
391 392 2.632377 CAACCTCATGTGAATACCGCT 58.368 47.619 0.00 0.00 0.00 5.52
392 393 1.670811 CCAACCTCATGTGAATACCGC 59.329 52.381 0.00 0.00 0.00 5.68
393 394 3.198068 CTCCAACCTCATGTGAATACCG 58.802 50.000 0.00 0.00 0.00 4.02
394 395 3.941483 CACTCCAACCTCATGTGAATACC 59.059 47.826 0.00 0.00 0.00 2.73
395 396 3.941483 CCACTCCAACCTCATGTGAATAC 59.059 47.826 0.00 0.00 0.00 1.89
396 397 3.843619 TCCACTCCAACCTCATGTGAATA 59.156 43.478 0.00 0.00 0.00 1.75
397 398 2.644299 TCCACTCCAACCTCATGTGAAT 59.356 45.455 0.00 0.00 0.00 2.57
398 399 2.054021 TCCACTCCAACCTCATGTGAA 58.946 47.619 0.00 0.00 0.00 3.18
399 400 1.347707 GTCCACTCCAACCTCATGTGA 59.652 52.381 0.00 0.00 0.00 3.58
400 401 1.349026 AGTCCACTCCAACCTCATGTG 59.651 52.381 0.00 0.00 0.00 3.21
401 402 1.734655 AGTCCACTCCAACCTCATGT 58.265 50.000 0.00 0.00 0.00 3.21
402 403 3.981071 TTAGTCCACTCCAACCTCATG 57.019 47.619 0.00 0.00 0.00 3.07
403 404 4.993705 TTTTAGTCCACTCCAACCTCAT 57.006 40.909 0.00 0.00 0.00 2.90
404 405 4.993705 ATTTTAGTCCACTCCAACCTCA 57.006 40.909 0.00 0.00 0.00 3.86
405 406 6.940867 AGTAAATTTTAGTCCACTCCAACCTC 59.059 38.462 0.00 0.00 0.00 3.85
406 407 6.849151 AGTAAATTTTAGTCCACTCCAACCT 58.151 36.000 0.00 0.00 0.00 3.50
407 408 8.803397 ATAGTAAATTTTAGTCCACTCCAACC 57.197 34.615 0.00 0.00 0.00 3.77
409 410 9.802039 ACAATAGTAAATTTTAGTCCACTCCAA 57.198 29.630 0.00 0.00 0.00 3.53
477 478 9.839817 TGGATTGTTTGATTCGTAGGATTATAA 57.160 29.630 0.00 0.00 0.00 0.98
478 479 9.268268 GTGGATTGTTTGATTCGTAGGATTATA 57.732 33.333 0.00 0.00 0.00 0.98
479 480 7.773224 TGTGGATTGTTTGATTCGTAGGATTAT 59.227 33.333 0.00 0.00 0.00 1.28
480 481 7.106890 TGTGGATTGTTTGATTCGTAGGATTA 58.893 34.615 0.00 0.00 0.00 1.75
481 482 5.943416 TGTGGATTGTTTGATTCGTAGGATT 59.057 36.000 0.00 0.00 0.00 3.01
482 483 5.496556 TGTGGATTGTTTGATTCGTAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
483 484 4.900684 TGTGGATTGTTTGATTCGTAGGA 58.099 39.130 0.00 0.00 0.00 2.94
484 485 5.818136 ATGTGGATTGTTTGATTCGTAGG 57.182 39.130 0.00 0.00 0.00 3.18
485 486 9.619316 TTTTTATGTGGATTGTTTGATTCGTAG 57.381 29.630 0.00 0.00 0.00 3.51
545 546 9.539194 AGGACCTCTTTGATTCAAAAGAATAAT 57.461 29.630 12.62 0.00 43.67 1.28
546 547 8.940397 AGGACCTCTTTGATTCAAAAGAATAA 57.060 30.769 12.62 0.00 43.67 1.40
547 548 8.940397 AAGGACCTCTTTGATTCAAAAGAATA 57.060 30.769 12.62 0.00 43.67 1.75
548 549 7.846101 AAGGACCTCTTTGATTCAAAAGAAT 57.154 32.000 12.62 0.32 43.67 2.40
549 550 8.760980 TTAAGGACCTCTTTGATTCAAAAGAA 57.239 30.769 12.62 1.84 43.67 2.52
550 551 8.940397 ATTAAGGACCTCTTTGATTCAAAAGA 57.060 30.769 12.62 10.75 42.47 2.52
551 552 9.987272 AAATTAAGGACCTCTTTGATTCAAAAG 57.013 29.630 12.62 11.84 38.31 2.27
552 553 9.762933 CAAATTAAGGACCTCTTTGATTCAAAA 57.237 29.630 12.62 4.19 36.93 2.44
553 554 8.923270 ACAAATTAAGGACCTCTTTGATTCAAA 58.077 29.630 21.78 11.19 36.93 2.69
554 555 8.477419 ACAAATTAAGGACCTCTTTGATTCAA 57.523 30.769 21.78 0.00 36.93 2.69
555 556 8.477419 AACAAATTAAGGACCTCTTTGATTCA 57.523 30.769 21.78 0.00 36.93 2.57
557 558 9.025041 CCTAACAAATTAAGGACCTCTTTGATT 57.975 33.333 21.78 16.19 36.93 2.57
558 559 8.170730 ACCTAACAAATTAAGGACCTCTTTGAT 58.829 33.333 21.78 15.89 36.93 2.57
559 560 7.523415 ACCTAACAAATTAAGGACCTCTTTGA 58.477 34.615 21.78 7.66 36.93 2.69
560 561 7.447238 TGACCTAACAAATTAAGGACCTCTTTG 59.553 37.037 16.70 16.70 36.93 2.77
561 562 7.523415 TGACCTAACAAATTAAGGACCTCTTT 58.477 34.615 0.00 0.00 36.93 2.52
562 563 7.086685 TGACCTAACAAATTAAGGACCTCTT 57.913 36.000 0.00 0.00 39.40 2.85
563 564 6.697641 TGACCTAACAAATTAAGGACCTCT 57.302 37.500 0.00 0.00 0.00 3.69
564 565 9.057089 CATATGACCTAACAAATTAAGGACCTC 57.943 37.037 0.00 0.00 0.00 3.85
565 566 7.998964 CCATATGACCTAACAAATTAAGGACCT 59.001 37.037 3.65 0.00 0.00 3.85
566 567 7.996644 TCCATATGACCTAACAAATTAAGGACC 59.003 37.037 3.65 0.00 0.00 4.46
567 568 8.974060 TCCATATGACCTAACAAATTAAGGAC 57.026 34.615 3.65 0.00 0.00 3.85
573 574 9.354673 CCACTAATCCATATGACCTAACAAATT 57.645 33.333 3.65 0.00 0.00 1.82
574 575 8.723365 TCCACTAATCCATATGACCTAACAAAT 58.277 33.333 3.65 0.00 0.00 2.32
575 576 8.096621 TCCACTAATCCATATGACCTAACAAA 57.903 34.615 3.65 0.00 0.00 2.83
576 577 7.684317 TCCACTAATCCATATGACCTAACAA 57.316 36.000 3.65 0.00 0.00 2.83
577 578 7.684317 TTCCACTAATCCATATGACCTAACA 57.316 36.000 3.65 0.00 0.00 2.41
578 579 8.974060 TTTTCCACTAATCCATATGACCTAAC 57.026 34.615 3.65 0.00 0.00 2.34
579 580 9.627123 CTTTTTCCACTAATCCATATGACCTAA 57.373 33.333 3.65 0.00 0.00 2.69
580 581 7.719633 GCTTTTTCCACTAATCCATATGACCTA 59.280 37.037 3.65 0.00 0.00 3.08
581 582 6.547510 GCTTTTTCCACTAATCCATATGACCT 59.452 38.462 3.65 0.00 0.00 3.85
582 583 6.547510 AGCTTTTTCCACTAATCCATATGACC 59.452 38.462 3.65 0.00 0.00 4.02
583 584 7.283127 TCAGCTTTTTCCACTAATCCATATGAC 59.717 37.037 3.65 0.00 0.00 3.06
584 585 7.345691 TCAGCTTTTTCCACTAATCCATATGA 58.654 34.615 3.65 0.00 0.00 2.15
585 586 7.572523 TCAGCTTTTTCCACTAATCCATATG 57.427 36.000 0.00 0.00 0.00 1.78
586 587 7.836183 ACTTCAGCTTTTTCCACTAATCCATAT 59.164 33.333 0.00 0.00 0.00 1.78
587 588 7.175104 ACTTCAGCTTTTTCCACTAATCCATA 58.825 34.615 0.00 0.00 0.00 2.74
588 589 6.012745 ACTTCAGCTTTTTCCACTAATCCAT 58.987 36.000 0.00 0.00 0.00 3.41
589 590 5.385198 ACTTCAGCTTTTTCCACTAATCCA 58.615 37.500 0.00 0.00 0.00 3.41
590 591 5.966742 ACTTCAGCTTTTTCCACTAATCC 57.033 39.130 0.00 0.00 0.00 3.01
623 624 9.566530 CGAACATCAATATTTGTATGGTTCAAA 57.433 29.630 0.00 0.00 38.77 2.69
624 625 8.735315 ACGAACATCAATATTTGTATGGTTCAA 58.265 29.630 0.00 0.00 0.00 2.69
625 626 8.180920 CACGAACATCAATATTTGTATGGTTCA 58.819 33.333 0.00 0.00 0.00 3.18
626 627 8.181573 ACACGAACATCAATATTTGTATGGTTC 58.818 33.333 0.00 0.00 0.00 3.62
627 628 8.050778 ACACGAACATCAATATTTGTATGGTT 57.949 30.769 0.00 0.00 0.00 3.67
628 629 7.624360 ACACGAACATCAATATTTGTATGGT 57.376 32.000 0.00 1.37 0.00 3.55
629 630 8.608317 TGTACACGAACATCAATATTTGTATGG 58.392 33.333 0.00 0.00 0.00 2.74
630 631 9.420966 GTGTACACGAACATCAATATTTGTATG 57.579 33.333 10.84 0.00 0.00 2.39
631 632 9.378551 AGTGTACACGAACATCAATATTTGTAT 57.621 29.630 19.93 0.00 36.20 2.29
632 633 8.766000 AGTGTACACGAACATCAATATTTGTA 57.234 30.769 19.93 0.00 36.20 2.41
633 634 7.386573 TGAGTGTACACGAACATCAATATTTGT 59.613 33.333 19.93 0.00 36.20 2.83
634 635 7.738345 TGAGTGTACACGAACATCAATATTTG 58.262 34.615 19.93 0.00 36.20 2.32
635 636 7.899178 TGAGTGTACACGAACATCAATATTT 57.101 32.000 19.93 0.00 36.20 1.40
636 637 7.224753 GGATGAGTGTACACGAACATCAATATT 59.775 37.037 34.94 18.26 39.87 1.28
637 638 6.701841 GGATGAGTGTACACGAACATCAATAT 59.298 38.462 34.94 18.50 39.87 1.28
638 639 6.040247 GGATGAGTGTACACGAACATCAATA 58.960 40.000 34.94 14.70 39.87 1.90
639 640 4.870426 GGATGAGTGTACACGAACATCAAT 59.130 41.667 34.94 20.32 39.87 2.57
640 641 4.242475 GGATGAGTGTACACGAACATCAA 58.758 43.478 34.94 17.95 39.87 2.57
641 642 3.672241 CGGATGAGTGTACACGAACATCA 60.672 47.826 34.94 27.31 39.87 3.07
642 643 2.852413 CGGATGAGTGTACACGAACATC 59.148 50.000 31.41 31.41 38.77 3.06
643 644 2.230508 ACGGATGAGTGTACACGAACAT 59.769 45.455 24.66 24.66 36.20 2.71
644 645 1.610038 ACGGATGAGTGTACACGAACA 59.390 47.619 19.93 19.68 36.20 3.18
645 646 2.342910 ACGGATGAGTGTACACGAAC 57.657 50.000 19.93 15.21 36.20 3.95
646 647 3.690628 TCATACGGATGAGTGTACACGAA 59.309 43.478 19.93 12.69 37.15 3.85
647 648 3.272581 TCATACGGATGAGTGTACACGA 58.727 45.455 19.93 11.42 37.15 4.35
648 649 3.685836 TCATACGGATGAGTGTACACG 57.314 47.619 19.93 9.86 37.15 4.49
657 658 0.527600 GTGTGCGCTCATACGGATGA 60.528 55.000 16.02 10.59 39.88 2.92
658 659 0.805711 TGTGTGCGCTCATACGGATG 60.806 55.000 16.02 0.00 37.16 3.51
659 660 0.806102 GTGTGTGCGCTCATACGGAT 60.806 55.000 20.74 0.00 37.16 4.18
660 661 1.445410 GTGTGTGCGCTCATACGGA 60.445 57.895 20.74 0.00 37.16 4.69
661 662 1.736282 TGTGTGTGCGCTCATACGG 60.736 57.895 26.68 0.00 37.16 4.02
662 663 1.416049 GTGTGTGTGCGCTCATACG 59.584 57.895 26.68 0.00 37.16 3.06
663 664 1.282248 ACGTGTGTGTGCGCTCATAC 61.282 55.000 26.16 26.16 35.23 2.39
664 665 0.598942 AACGTGTGTGTGCGCTCATA 60.599 50.000 16.02 10.33 0.00 2.15
665 666 1.887242 AACGTGTGTGTGCGCTCAT 60.887 52.632 16.02 0.00 0.00 2.90
666 667 2.510464 AACGTGTGTGTGCGCTCA 60.510 55.556 9.73 8.97 0.00 4.26
667 668 1.484227 TACAACGTGTGTGTGCGCTC 61.484 55.000 9.73 5.51 41.89 5.03
668 669 0.878523 ATACAACGTGTGTGTGCGCT 60.879 50.000 9.73 0.00 41.89 5.92
669 670 0.721155 CATACAACGTGTGTGTGCGC 60.721 55.000 0.00 0.00 41.69 6.09
670 671 3.343463 CATACAACGTGTGTGTGCG 57.657 52.632 12.08 0.00 41.69 5.34
673 674 1.225376 CGGGCATACAACGTGTGTGT 61.225 55.000 11.90 5.31 40.89 3.72
674 675 0.946700 TCGGGCATACAACGTGTGTG 60.947 55.000 11.90 10.61 41.89 3.82
675 676 0.669318 CTCGGGCATACAACGTGTGT 60.669 55.000 8.15 8.15 44.82 3.72
676 677 0.669318 ACTCGGGCATACAACGTGTG 60.669 55.000 0.00 0.00 33.77 3.82
677 678 0.389426 GACTCGGGCATACAACGTGT 60.389 55.000 0.00 0.00 37.09 4.49
678 679 1.410737 CGACTCGGGCATACAACGTG 61.411 60.000 0.00 0.00 0.00 4.49
679 680 1.153901 CGACTCGGGCATACAACGT 60.154 57.895 0.00 0.00 0.00 3.99
680 681 1.138036 TCGACTCGGGCATACAACG 59.862 57.895 0.00 0.00 0.00 4.10
681 682 0.804933 GGTCGACTCGGGCATACAAC 60.805 60.000 16.46 0.00 0.00 3.32
682 683 0.968901 AGGTCGACTCGGGCATACAA 60.969 55.000 16.46 0.00 0.00 2.41
683 684 1.379443 AGGTCGACTCGGGCATACA 60.379 57.895 16.46 0.00 0.00 2.29
684 685 1.359475 GAGGTCGACTCGGGCATAC 59.641 63.158 16.46 0.00 36.29 2.39
685 686 3.837578 GAGGTCGACTCGGGCATA 58.162 61.111 16.46 0.00 36.29 3.14
692 693 0.452585 GTGGTAGCTGAGGTCGACTC 59.547 60.000 16.46 11.34 46.78 3.36
693 694 0.966370 GGTGGTAGCTGAGGTCGACT 60.966 60.000 16.46 0.90 0.00 4.18
694 695 1.511768 GGTGGTAGCTGAGGTCGAC 59.488 63.158 7.13 7.13 0.00 4.20
695 696 2.044555 CGGTGGTAGCTGAGGTCGA 61.045 63.158 0.00 0.00 0.00 4.20
696 697 2.490217 CGGTGGTAGCTGAGGTCG 59.510 66.667 0.00 0.00 0.00 4.79
697 698 1.681327 TCCGGTGGTAGCTGAGGTC 60.681 63.158 0.00 0.00 0.00 3.85
698 699 1.982938 GTCCGGTGGTAGCTGAGGT 60.983 63.158 0.00 0.00 0.00 3.85
699 700 1.541310 TTGTCCGGTGGTAGCTGAGG 61.541 60.000 0.00 0.00 0.00 3.86
700 701 0.320374 TTTGTCCGGTGGTAGCTGAG 59.680 55.000 0.00 0.00 0.00 3.35
701 702 0.981183 ATTTGTCCGGTGGTAGCTGA 59.019 50.000 0.00 0.00 0.00 4.26
702 703 2.550978 CTATTTGTCCGGTGGTAGCTG 58.449 52.381 0.00 0.00 0.00 4.24
703 704 1.134491 GCTATTTGTCCGGTGGTAGCT 60.134 52.381 0.00 0.00 33.58 3.32
704 705 1.296727 GCTATTTGTCCGGTGGTAGC 58.703 55.000 0.00 6.36 0.00 3.58
705 706 2.093658 AGTGCTATTTGTCCGGTGGTAG 60.094 50.000 0.00 0.00 0.00 3.18
706 707 1.903860 AGTGCTATTTGTCCGGTGGTA 59.096 47.619 0.00 0.00 0.00 3.25
707 708 0.690762 AGTGCTATTTGTCCGGTGGT 59.309 50.000 0.00 0.00 0.00 4.16
708 709 2.684001 TAGTGCTATTTGTCCGGTGG 57.316 50.000 0.00 0.00 0.00 4.61
709 710 5.560966 AATTTAGTGCTATTTGTCCGGTG 57.439 39.130 0.00 0.00 0.00 4.94
710 711 5.944007 AGAAATTTAGTGCTATTTGTCCGGT 59.056 36.000 0.00 0.00 0.00 5.28
711 712 6.436843 AGAAATTTAGTGCTATTTGTCCGG 57.563 37.500 0.00 0.00 0.00 5.14
712 713 9.834628 TTTTAGAAATTTAGTGCTATTTGTCCG 57.165 29.630 0.00 0.00 0.00 4.79
808 817 7.398332 GGAAAATGGATTATTCATAGGCCAGAT 59.602 37.037 5.01 0.00 0.00 2.90
889 907 4.340950 TCCAAGTGTTTCTGGTTTGGATTC 59.659 41.667 0.39 0.00 41.60 2.52
934 953 4.936891 GCCTCGGCAAAATGATAGAAAAT 58.063 39.130 2.41 0.00 41.49 1.82
964 983 2.181021 CTGGACGCTGTCGGGTAC 59.819 66.667 3.27 0.00 40.69 3.34
965 984 3.755628 GCTGGACGCTGTCGGGTA 61.756 66.667 3.27 0.00 40.69 3.69
968 987 4.803426 GAGGCTGGACGCTGTCGG 62.803 72.222 0.00 1.12 40.69 4.79
969 988 4.803426 GGAGGCTGGACGCTGTCG 62.803 72.222 0.00 0.00 42.43 4.35
970 989 3.655810 CTGGAGGCTGGACGCTGTC 62.656 68.421 0.00 0.79 39.13 3.51
971 990 3.699894 CTGGAGGCTGGACGCTGT 61.700 66.667 0.00 0.00 39.13 4.40
1045 1663 2.852075 TGCCGGGTTCTTGGAGGT 60.852 61.111 2.18 0.00 0.00 3.85
1105 1723 8.114290 GCTTAATAAGATCAATCAAAACGACGA 58.886 33.333 0.00 0.00 0.00 4.20
1110 1729 8.915871 TGCAGCTTAATAAGATCAATCAAAAC 57.084 30.769 3.88 0.00 0.00 2.43
1256 1886 2.417516 CCGGTGCCTACGATGGAG 59.582 66.667 0.00 0.00 0.00 3.86
1352 1982 2.695666 GAGGAGCATGCAGTAGAAGGTA 59.304 50.000 21.98 0.00 0.00 3.08
1385 2015 1.739562 CTGGAGACGGAGCAAGTGC 60.740 63.158 0.00 0.00 39.98 4.40
1474 2114 9.632638 AATAATGAACCACAGCATACTAAGATT 57.367 29.630 0.00 0.00 0.00 2.40
1492 2141 8.262933 TCTGAGAAGATCAAGCTGAATAATGAA 58.737 33.333 0.00 0.00 37.52 2.57
1494 2143 7.306690 CGTCTGAGAAGATCAAGCTGAATAATG 60.307 40.741 0.00 0.00 37.52 1.90
1527 2176 6.509517 GCGAATGCGTGACTAATCTTGATAAA 60.510 38.462 0.00 0.00 40.36 1.40
1529 2178 4.444388 GCGAATGCGTGACTAATCTTGATA 59.556 41.667 0.00 0.00 40.36 2.15
1625 2277 3.211288 CTCATCTCCGAGCCCGTT 58.789 61.111 0.00 0.00 0.00 4.44
1840 2495 2.283173 TCGACTGGCAGCAGGAGA 60.283 61.111 15.89 4.17 0.00 3.71
1852 2507 3.501548 GAGAGCGCGACCTCGACT 61.502 66.667 12.10 0.00 43.02 4.18
1897 2552 1.522569 GGCGAGTATGCTGAAGGGT 59.477 57.895 0.00 0.00 34.52 4.34
2170 2825 3.833645 TAGCCGCAGACGCCGAAT 61.834 61.111 0.00 0.00 38.22 3.34
2221 2876 3.020237 GCTCGGGAGGTTGAGGGTC 62.020 68.421 0.00 0.00 32.78 4.46
2320 2975 2.761195 CCGCGACTCCACGATCTCA 61.761 63.158 8.23 0.00 35.09 3.27
2605 3263 2.560861 CCATGACCGGCAAACACG 59.439 61.111 0.00 0.00 0.00 4.49
2632 3290 3.240670 TCACTGGGGTGACAAGACT 57.759 52.632 0.00 0.00 46.19 3.24
2711 3387 6.308041 GGTTTTTCTTGACTAATTTCGATGGC 59.692 38.462 0.00 0.00 0.00 4.40
2729 3405 4.201812 GCTCTTTGGTTTTGCAGGTTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
2739 3417 4.557496 GCTAACCTCTGCTCTTTGGTTTTG 60.557 45.833 0.00 0.00 42.14 2.44
2795 3506 3.498774 ATAGGGACAGTGATGAATGCC 57.501 47.619 0.00 0.00 0.00 4.40
2797 3508 6.094048 ACGAAAAATAGGGACAGTGATGAATG 59.906 38.462 0.00 0.00 0.00 2.67
2800 3511 5.160607 ACGAAAAATAGGGACAGTGATGA 57.839 39.130 0.00 0.00 0.00 2.92
2805 3516 3.581332 TGAGGACGAAAAATAGGGACAGT 59.419 43.478 0.00 0.00 0.00 3.55
2807 3518 4.041198 ACTTGAGGACGAAAAATAGGGACA 59.959 41.667 0.00 0.00 0.00 4.02
2811 3522 4.392138 GTGGACTTGAGGACGAAAAATAGG 59.608 45.833 0.00 0.00 0.00 2.57
2812 3523 4.994852 TGTGGACTTGAGGACGAAAAATAG 59.005 41.667 0.00 0.00 0.00 1.73
2813 3524 4.963373 TGTGGACTTGAGGACGAAAAATA 58.037 39.130 0.00 0.00 0.00 1.40
2814 3525 3.815809 TGTGGACTTGAGGACGAAAAAT 58.184 40.909 0.00 0.00 0.00 1.82
2820 3573 1.068588 TGTCTTGTGGACTTGAGGACG 59.931 52.381 0.00 0.00 44.74 4.79
2821 3574 2.910688 TGTCTTGTGGACTTGAGGAC 57.089 50.000 0.00 0.00 44.74 3.85
2823 3576 6.824305 ATTTTATGTCTTGTGGACTTGAGG 57.176 37.500 0.00 0.00 44.74 3.86
2826 3579 7.489113 GCCATTATTTTATGTCTTGTGGACTTG 59.511 37.037 0.00 0.00 44.74 3.16
2828 3581 6.663093 TGCCATTATTTTATGTCTTGTGGACT 59.337 34.615 0.00 0.00 44.74 3.85
2850 3603 6.728200 TCACTCATCGAAAATTTGATATGCC 58.272 36.000 0.00 0.00 30.21 4.40
2862 3615 9.075519 GCATTTGAATATTTTCACTCATCGAAA 57.924 29.630 0.00 0.00 41.50 3.46
2918 3677 6.995686 TCAAGCTTGAACTTAGTTGGATTGTA 59.004 34.615 26.61 0.00 33.55 2.41
2919 3678 5.827797 TCAAGCTTGAACTTAGTTGGATTGT 59.172 36.000 26.61 0.00 33.55 2.71
2920 3679 6.317789 TCAAGCTTGAACTTAGTTGGATTG 57.682 37.500 26.61 7.93 33.55 2.67
2938 3709 2.686558 TGTGCGAGTTGAATTCAAGC 57.313 45.000 21.05 19.82 36.39 4.01
2963 3734 2.418976 GCGCTTAAAAGGGACAACTAGG 59.581 50.000 10.64 0.00 41.06 3.02
3088 3865 4.141688 GGTGATCCTATCCGACTTCCTTTT 60.142 45.833 0.00 0.00 0.00 2.27
3090 3867 2.966516 GGTGATCCTATCCGACTTCCTT 59.033 50.000 0.00 0.00 0.00 3.36
3091 3868 2.091278 TGGTGATCCTATCCGACTTCCT 60.091 50.000 0.00 0.00 34.23 3.36
3144 3921 2.829023 TCGTGGAGGAAGAGGGTTAAT 58.171 47.619 0.00 0.00 0.00 1.40
3154 3931 3.118445 TGCACAATATGATCGTGGAGGAA 60.118 43.478 0.00 0.00 0.00 3.36
3179 3956 5.295950 GGAGGTGATGAGATATTGTGTGAG 58.704 45.833 0.00 0.00 0.00 3.51
3191 3968 3.869623 CCTTGTGGGAGGTGATGAG 57.130 57.895 0.00 0.00 37.23 2.90
3235 4013 0.318107 CGCTTGCAGTTGTTTGAGGG 60.318 55.000 0.00 0.00 0.00 4.30
3284 4063 8.601845 AAGAGAAGAAAAAGCTAGAAAGACTC 57.398 34.615 0.00 0.00 0.00 3.36
3349 4137 3.490800 GGAGACCTTCGTCAAGACTAC 57.509 52.381 0.00 0.00 41.87 2.73
3367 4155 3.075432 TGACATATCTATCCTCCGTGGGA 59.925 47.826 0.00 0.00 39.95 4.37
3407 4196 5.882000 TGCTGTTAATGAGCATGACTACAAT 59.118 36.000 7.80 0.00 41.56 2.71
3430 4219 0.678395 AGCTCCTCCATGCGACTATG 59.322 55.000 0.00 0.00 0.00 2.23
3436 4225 1.817099 GGACAAGCTCCTCCATGCG 60.817 63.158 4.99 0.00 35.89 4.73
3536 4329 2.887783 GTCATAGGAGCTCTGGATTCGA 59.112 50.000 14.64 0.00 0.00 3.71
3538 4331 3.640967 AGTGTCATAGGAGCTCTGGATTC 59.359 47.826 14.64 0.00 0.00 2.52
3548 4341 5.947228 TTTTTGAAGCAGTGTCATAGGAG 57.053 39.130 0.00 0.00 0.00 3.69
3557 4350 5.163992 GCACATCATCATTTTTGAAGCAGTG 60.164 40.000 0.00 0.00 0.00 3.66
3579 4378 4.662966 AATATCAGGGCCATGATAAGCA 57.337 40.909 36.11 21.22 43.50 3.91
3605 4408 1.352083 ACCGCCCATATGCTCTACAT 58.648 50.000 0.00 0.00 43.18 2.29
3622 4426 1.003580 TGCACTGGAGATGGAAGAACC 59.996 52.381 0.00 0.00 39.54 3.62
3664 4468 2.046892 CAAGAGGGTGGCGAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
3669 4473 2.747855 GGAAGCAAGAGGGTGGCG 60.748 66.667 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.