Multiple sequence alignment - TraesCS5A01G472000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G472000 chr5A 100.000 6242 0 0 1 6242 649186425 649192666 0.000000e+00 11527.0
1 TraesCS5A01G472000 chr5A 87.500 56 7 0 158 213 397545109 397545054 1.450000e-06 65.8
2 TraesCS5A01G472000 chr5D 94.874 3141 119 17 801 3921 520719159 520722277 0.000000e+00 4870.0
3 TraesCS5A01G472000 chr5D 90.929 1345 76 16 4371 5683 520722803 520724133 0.000000e+00 1766.0
4 TraesCS5A01G472000 chr5D 94.009 434 13 5 3937 4369 520722261 520722682 0.000000e+00 645.0
5 TraesCS5A01G472000 chr5D 92.340 235 17 1 5740 5974 520724152 520724385 3.610000e-87 333.0
6 TraesCS5A01G472000 chr5D 87.324 71 8 1 149 219 231779027 231778958 5.190000e-11 80.5
7 TraesCS5A01G472000 chr5D 88.333 60 5 2 158 217 557157370 557157427 3.120000e-08 71.3
8 TraesCS5A01G472000 chr5B 91.549 3124 148 49 312 3370 656227765 656230837 0.000000e+00 4200.0
9 TraesCS5A01G472000 chr5B 91.539 2352 107 36 3937 6232 656231451 656233766 0.000000e+00 3157.0
10 TraesCS5A01G472000 chr5B 94.322 317 14 2 3605 3921 656231155 656231467 3.380000e-132 483.0
11 TraesCS5A01G472000 chr5B 89.671 213 8 6 3381 3592 656230971 656231170 6.210000e-65 259.0
12 TraesCS5A01G472000 chr7A 77.698 139 27 4 80 217 561062304 561062169 1.440000e-11 82.4
13 TraesCS5A01G472000 chr6A 90.000 60 5 1 158 217 291018316 291018374 6.710000e-10 76.8
14 TraesCS5A01G472000 chr7B 88.333 60 6 1 158 217 728963635 728963577 3.120000e-08 71.3
15 TraesCS5A01G472000 chr3A 88.333 60 6 1 158 217 69161420 69161478 3.120000e-08 71.3
16 TraesCS5A01G472000 chr1B 85.714 70 7 3 149 217 687679432 687679365 3.120000e-08 71.3
17 TraesCS5A01G472000 chr4B 84.058 69 10 1 149 217 648433725 648433792 1.450000e-06 65.8
18 TraesCS5A01G472000 chr2B 100.000 28 0 0 88 115 800115373 800115346 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G472000 chr5A 649186425 649192666 6241 False 11527.00 11527 100.00000 1 6242 1 chr5A.!!$F1 6241
1 TraesCS5A01G472000 chr5D 520719159 520724385 5226 False 1903.50 4870 93.03800 801 5974 4 chr5D.!!$F2 5173
2 TraesCS5A01G472000 chr5B 656227765 656233766 6001 False 2024.75 4200 91.77025 312 6232 4 chr5B.!!$F1 5920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.031616 ATGGGGAGACAGAGTCCTCC 60.032 60.0 5.57 5.57 32.96 4.30 F
23 24 0.031616 GGGGAGACAGAGTCCTCCAT 60.032 60.0 13.87 0.00 34.17 3.41 F
207 208 0.032017 AGTAGCCCCTGAACCGATCT 60.032 55.0 0.00 0.00 0.00 2.75 F
304 305 0.034337 GAACTCCCGTGCTACACCAA 59.966 55.0 0.00 0.00 0.00 3.67 F
305 306 0.034896 AACTCCCGTGCTACACCAAG 59.965 55.0 0.00 0.00 0.00 3.61 F
309 310 0.034896 CCCGTGCTACACCAAGAAGT 59.965 55.0 0.00 0.00 0.00 3.01 F
1229 1255 0.103937 GCCACTAGCTAGCTCTGGTG 59.896 60.0 29.35 27.39 42.81 4.17 F
1720 1762 0.104855 GGATGGCAGATCACGCACTA 59.895 55.0 9.11 0.00 0.00 2.74 F
2367 2418 0.174389 GCAGAGTCATCGGCAGAGAA 59.826 55.0 0.00 0.00 44.92 2.87 F
3302 3390 0.693049 AGGTCAGATGGCGTTTTCCT 59.307 50.0 0.00 0.00 0.00 3.36 F
4808 5163 1.927895 CTCGCCAGCTTAGAAATCGT 58.072 50.0 0.00 0.00 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1743 0.104855 TAGTGCGTGATCTGCCATCC 59.895 55.000 7.84 0.00 0.00 3.51 R
1703 1745 0.528466 CGTAGTGCGTGATCTGCCAT 60.528 55.000 7.84 0.46 35.54 4.40 R
2116 2165 0.178068 AGTAGCGGAACCGAATGCAT 59.822 50.000 17.63 0.00 42.83 3.96 R
2284 2333 8.835439 ACAAACAAGTGTGAAAAACAATCTTTT 58.165 25.926 0.00 0.00 41.57 2.27 R
2318 2367 4.592485 TCGCCACAACAATTTAACCAAT 57.408 36.364 0.00 0.00 0.00 3.16 R
2319 2368 4.592485 ATCGCCACAACAATTTAACCAA 57.408 36.364 0.00 0.00 0.00 3.67 R
2889 2945 3.197265 GTCAACTTGCTGCCAAAAACAT 58.803 40.909 0.00 0.00 0.00 2.71 R
3596 3809 3.245797 CATCATATGGAAGTCGGCGTAG 58.754 50.000 6.85 0.00 0.00 3.51 R
4349 4571 2.444010 TGGTAACTAAGGGTGCAAAGGT 59.556 45.455 0.00 0.00 37.61 3.50 R
4910 5265 0.469494 ACATCATGCATACCTCGGCA 59.531 50.000 0.00 0.00 45.23 5.69 R
5955 6372 0.391927 CCTCCGGCCGTGATTTTACA 60.392 55.000 26.12 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.463047 GTATGGGGAGACAGAGTCCT 57.537 55.000 0.00 0.00 34.16 3.85
20 21 2.312390 GTATGGGGAGACAGAGTCCTC 58.688 57.143 0.00 0.00 34.78 3.71
21 22 0.031616 ATGGGGAGACAGAGTCCTCC 60.032 60.000 5.57 5.57 32.96 4.30
22 23 1.388531 GGGGAGACAGAGTCCTCCA 59.611 63.158 13.87 0.00 34.17 3.86
23 24 0.031616 GGGGAGACAGAGTCCTCCAT 60.032 60.000 13.87 0.00 34.17 3.41
24 25 1.118838 GGGAGACAGAGTCCTCCATG 58.881 60.000 13.87 0.00 34.17 3.66
25 26 1.342474 GGGAGACAGAGTCCTCCATGA 60.342 57.143 13.87 0.00 34.17 3.07
26 27 2.676748 GGAGACAGAGTCCTCCATGAT 58.323 52.381 8.58 0.00 33.38 2.45
27 28 2.627699 GGAGACAGAGTCCTCCATGATC 59.372 54.545 8.58 0.00 33.38 2.92
28 29 3.295093 GAGACAGAGTCCTCCATGATCA 58.705 50.000 0.00 0.00 32.18 2.92
29 30 3.030291 AGACAGAGTCCTCCATGATCAC 58.970 50.000 0.00 0.00 32.18 3.06
30 31 2.762887 GACAGAGTCCTCCATGATCACA 59.237 50.000 0.00 0.00 0.00 3.58
31 32 3.176411 ACAGAGTCCTCCATGATCACAA 58.824 45.455 0.00 0.00 0.00 3.33
32 33 3.055530 ACAGAGTCCTCCATGATCACAAC 60.056 47.826 0.00 0.00 0.00 3.32
33 34 3.197333 CAGAGTCCTCCATGATCACAACT 59.803 47.826 0.00 0.00 0.00 3.16
34 35 3.843027 AGAGTCCTCCATGATCACAACTT 59.157 43.478 0.00 0.00 0.00 2.66
35 36 4.081198 AGAGTCCTCCATGATCACAACTTC 60.081 45.833 0.00 0.00 0.00 3.01
36 37 3.843027 AGTCCTCCATGATCACAACTTCT 59.157 43.478 0.00 0.00 0.00 2.85
37 38 4.288105 AGTCCTCCATGATCACAACTTCTT 59.712 41.667 0.00 0.00 0.00 2.52
38 39 4.394300 GTCCTCCATGATCACAACTTCTTG 59.606 45.833 0.00 0.00 0.00 3.02
39 40 4.042062 TCCTCCATGATCACAACTTCTTGT 59.958 41.667 0.00 0.00 41.61 3.16
47 48 2.542766 ACAACTTCTTGTGTTGCACG 57.457 45.000 6.53 0.00 46.03 5.34
48 49 1.191096 CAACTTCTTGTGTTGCACGC 58.809 50.000 0.00 0.00 38.36 5.34
49 50 0.100503 AACTTCTTGTGTTGCACGCC 59.899 50.000 0.00 0.00 37.14 5.68
50 51 1.029408 ACTTCTTGTGTTGCACGCCA 61.029 50.000 0.00 0.00 37.14 5.69
51 52 0.100325 CTTCTTGTGTTGCACGCCAA 59.900 50.000 0.00 0.00 37.14 4.52
52 53 0.100325 TTCTTGTGTTGCACGCCAAG 59.900 50.000 10.65 10.65 37.14 3.61
53 54 1.945662 CTTGTGTTGCACGCCAAGC 60.946 57.895 5.72 0.00 37.14 4.01
54 55 3.423162 TTGTGTTGCACGCCAAGCC 62.423 57.895 0.00 0.00 37.14 4.35
55 56 3.595758 GTGTTGCACGCCAAGCCT 61.596 61.111 0.00 0.00 33.21 4.58
56 57 2.832661 TGTTGCACGCCAAGCCTT 60.833 55.556 0.00 0.00 33.21 4.35
57 58 2.417097 GTTGCACGCCAAGCCTTT 59.583 55.556 0.00 0.00 33.21 3.11
58 59 1.227234 GTTGCACGCCAAGCCTTTT 60.227 52.632 0.00 0.00 33.21 2.27
59 60 1.227205 TTGCACGCCAAGCCTTTTG 60.227 52.632 0.00 0.00 0.00 2.44
60 61 2.356194 GCACGCCAAGCCTTTTGG 60.356 61.111 1.59 1.59 42.37 3.28
61 62 2.855514 GCACGCCAAGCCTTTTGGA 61.856 57.895 9.99 0.00 44.07 3.53
62 63 1.286880 CACGCCAAGCCTTTTGGAG 59.713 57.895 9.99 8.90 44.07 3.86
63 64 1.152756 ACGCCAAGCCTTTTGGAGT 60.153 52.632 9.99 9.53 45.59 3.85
64 65 1.581447 CGCCAAGCCTTTTGGAGTC 59.419 57.895 9.99 0.00 44.07 3.36
65 66 0.890996 CGCCAAGCCTTTTGGAGTCT 60.891 55.000 9.99 0.00 44.07 3.24
66 67 1.332195 GCCAAGCCTTTTGGAGTCTT 58.668 50.000 9.99 0.00 44.07 3.01
67 68 1.688735 GCCAAGCCTTTTGGAGTCTTT 59.311 47.619 9.99 0.00 44.07 2.52
68 69 2.288457 GCCAAGCCTTTTGGAGTCTTTC 60.288 50.000 9.99 0.00 44.07 2.62
69 70 3.225940 CCAAGCCTTTTGGAGTCTTTCT 58.774 45.455 0.00 0.00 44.07 2.52
70 71 4.398319 CCAAGCCTTTTGGAGTCTTTCTA 58.602 43.478 0.00 0.00 44.07 2.10
71 72 5.012893 CCAAGCCTTTTGGAGTCTTTCTAT 58.987 41.667 0.00 0.00 44.07 1.98
72 73 5.478332 CCAAGCCTTTTGGAGTCTTTCTATT 59.522 40.000 0.00 0.00 44.07 1.73
73 74 6.659242 CCAAGCCTTTTGGAGTCTTTCTATTA 59.341 38.462 0.00 0.00 44.07 0.98
74 75 7.340487 CCAAGCCTTTTGGAGTCTTTCTATTAT 59.660 37.037 0.00 0.00 44.07 1.28
75 76 8.743714 CAAGCCTTTTGGAGTCTTTCTATTATT 58.256 33.333 0.00 0.00 44.07 1.40
76 77 8.885693 AGCCTTTTGGAGTCTTTCTATTATTT 57.114 30.769 0.00 0.00 44.07 1.40
77 78 8.743714 AGCCTTTTGGAGTCTTTCTATTATTTG 58.256 33.333 0.00 0.00 44.07 2.32
78 79 7.489435 GCCTTTTGGAGTCTTTCTATTATTTGC 59.511 37.037 0.00 0.00 44.07 3.68
79 80 7.976175 CCTTTTGGAGTCTTTCTATTATTTGCC 59.024 37.037 0.00 0.00 44.07 4.52
80 81 8.415950 TTTTGGAGTCTTTCTATTATTTGCCA 57.584 30.769 0.00 0.00 0.00 4.92
81 82 8.593945 TTTGGAGTCTTTCTATTATTTGCCAT 57.406 30.769 0.00 0.00 0.00 4.40
82 83 7.572523 TGGAGTCTTTCTATTATTTGCCATG 57.427 36.000 0.00 0.00 0.00 3.66
83 84 6.547141 TGGAGTCTTTCTATTATTTGCCATGG 59.453 38.462 7.63 7.63 0.00 3.66
84 85 6.015940 GGAGTCTTTCTATTATTTGCCATGGG 60.016 42.308 15.13 0.00 0.00 4.00
104 105 2.203625 GCCCAAAGTGGCCCAAGA 60.204 61.111 0.00 0.00 46.11 3.02
105 106 1.610379 GCCCAAAGTGGCCCAAGAT 60.610 57.895 0.00 0.00 46.11 2.40
106 107 1.891722 GCCCAAAGTGGCCCAAGATG 61.892 60.000 0.00 0.00 46.11 2.90
107 108 0.251742 CCCAAAGTGGCCCAAGATGA 60.252 55.000 0.00 0.00 35.79 2.92
108 109 1.631405 CCAAAGTGGCCCAAGATGAA 58.369 50.000 0.00 0.00 0.00 2.57
109 110 1.969923 CCAAAGTGGCCCAAGATGAAA 59.030 47.619 0.00 0.00 0.00 2.69
110 111 2.289010 CCAAAGTGGCCCAAGATGAAAC 60.289 50.000 0.00 0.00 0.00 2.78
111 112 1.632589 AAGTGGCCCAAGATGAAACC 58.367 50.000 0.00 0.00 0.00 3.27
112 113 0.609131 AGTGGCCCAAGATGAAACCG 60.609 55.000 0.00 0.00 0.00 4.44
113 114 0.608035 GTGGCCCAAGATGAAACCGA 60.608 55.000 0.00 0.00 0.00 4.69
114 115 0.608035 TGGCCCAAGATGAAACCGAC 60.608 55.000 0.00 0.00 0.00 4.79
115 116 0.608035 GGCCCAAGATGAAACCGACA 60.608 55.000 0.00 0.00 0.00 4.35
116 117 0.804989 GCCCAAGATGAAACCGACAG 59.195 55.000 0.00 0.00 0.00 3.51
117 118 1.610624 GCCCAAGATGAAACCGACAGA 60.611 52.381 0.00 0.00 0.00 3.41
118 119 2.350522 CCCAAGATGAAACCGACAGAG 58.649 52.381 0.00 0.00 0.00 3.35
119 120 2.350522 CCAAGATGAAACCGACAGAGG 58.649 52.381 0.00 0.00 37.30 3.69
120 121 2.350522 CAAGATGAAACCGACAGAGGG 58.649 52.381 0.00 0.00 35.02 4.30
121 122 0.905357 AGATGAAACCGACAGAGGGG 59.095 55.000 0.00 0.00 35.02 4.79
122 123 0.107654 GATGAAACCGACAGAGGGGG 60.108 60.000 0.00 0.00 35.02 5.40
123 124 0.840722 ATGAAACCGACAGAGGGGGT 60.841 55.000 0.00 0.00 34.99 4.95
124 125 0.178926 TGAAACCGACAGAGGGGGTA 60.179 55.000 0.00 0.00 32.68 3.69
125 126 0.248565 GAAACCGACAGAGGGGGTAC 59.751 60.000 0.00 0.00 32.68 3.34
126 127 0.178912 AAACCGACAGAGGGGGTACT 60.179 55.000 0.00 0.00 32.68 2.73
127 128 0.706433 AACCGACAGAGGGGGTACTA 59.294 55.000 0.00 0.00 32.68 1.82
128 129 0.706433 ACCGACAGAGGGGGTACTAA 59.294 55.000 0.00 0.00 35.02 2.24
129 130 1.077663 ACCGACAGAGGGGGTACTAAA 59.922 52.381 0.00 0.00 35.02 1.85
130 131 1.479730 CCGACAGAGGGGGTACTAAAC 59.520 57.143 0.00 0.00 0.00 2.01
131 132 2.454538 CGACAGAGGGGGTACTAAACT 58.545 52.381 0.00 0.00 0.00 2.66
132 133 2.426381 CGACAGAGGGGGTACTAAACTC 59.574 54.545 0.00 0.00 0.00 3.01
133 134 2.426381 GACAGAGGGGGTACTAAACTCG 59.574 54.545 0.00 0.00 33.58 4.18
134 135 1.755380 CAGAGGGGGTACTAAACTCGG 59.245 57.143 0.00 0.00 33.58 4.63
135 136 0.463204 GAGGGGGTACTAAACTCGGC 59.537 60.000 0.00 0.00 0.00 5.54
136 137 0.979709 AGGGGGTACTAAACTCGGCC 60.980 60.000 0.00 0.00 0.00 6.13
137 138 1.524002 GGGGTACTAAACTCGGCCC 59.476 63.158 0.00 0.00 35.52 5.80
138 139 1.266867 GGGGTACTAAACTCGGCCCA 61.267 60.000 0.00 0.00 37.88 5.36
139 140 0.107993 GGGTACTAAACTCGGCCCAC 60.108 60.000 0.00 0.00 36.25 4.61
140 141 0.107993 GGTACTAAACTCGGCCCACC 60.108 60.000 0.00 0.00 0.00 4.61
141 142 0.609662 GTACTAAACTCGGCCCACCA 59.390 55.000 0.00 0.00 34.57 4.17
142 143 0.899720 TACTAAACTCGGCCCACCAG 59.100 55.000 0.00 0.00 34.57 4.00
143 144 1.078426 CTAAACTCGGCCCACCAGG 60.078 63.158 0.00 0.00 39.47 4.45
152 153 2.352805 CCCACCAGGCCAAGAGTC 59.647 66.667 5.01 0.00 0.00 3.36
153 154 2.046892 CCACCAGGCCAAGAGTCG 60.047 66.667 5.01 0.00 0.00 4.18
154 155 2.743718 CACCAGGCCAAGAGTCGT 59.256 61.111 5.01 0.00 0.00 4.34
155 156 1.374758 CACCAGGCCAAGAGTCGTC 60.375 63.158 5.01 0.00 0.00 4.20
156 157 1.837051 ACCAGGCCAAGAGTCGTCA 60.837 57.895 5.01 0.00 0.00 4.35
157 158 1.194781 ACCAGGCCAAGAGTCGTCAT 61.195 55.000 5.01 0.00 0.00 3.06
158 159 0.742281 CCAGGCCAAGAGTCGTCATG 60.742 60.000 5.01 0.00 0.00 3.07
159 160 0.742281 CAGGCCAAGAGTCGTCATGG 60.742 60.000 5.01 3.75 43.37 3.66
160 161 1.194781 AGGCCAAGAGTCGTCATGGT 61.195 55.000 5.01 0.00 42.61 3.55
161 162 1.021390 GGCCAAGAGTCGTCATGGTG 61.021 60.000 0.00 0.00 42.61 4.17
162 163 0.037326 GCCAAGAGTCGTCATGGTGA 60.037 55.000 0.00 0.00 42.61 4.02
163 164 2.001812 CCAAGAGTCGTCATGGTGAG 57.998 55.000 0.00 0.00 36.88 3.51
164 165 1.546029 CCAAGAGTCGTCATGGTGAGA 59.454 52.381 0.00 0.00 36.88 3.27
165 166 2.416566 CCAAGAGTCGTCATGGTGAGAG 60.417 54.545 0.00 0.00 36.88 3.20
166 167 1.468985 AGAGTCGTCATGGTGAGAGG 58.531 55.000 0.00 0.00 0.00 3.69
167 168 0.179124 GAGTCGTCATGGTGAGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
168 169 1.153549 GTCGTCATGGTGAGAGGCC 60.154 63.158 0.00 0.00 0.00 5.19
169 170 2.187946 CGTCATGGTGAGAGGCCC 59.812 66.667 0.00 0.00 0.00 5.80
170 171 2.592308 GTCATGGTGAGAGGCCCC 59.408 66.667 0.00 0.00 0.00 5.80
171 172 1.997874 GTCATGGTGAGAGGCCCCT 60.998 63.158 0.00 0.00 0.00 4.79
172 173 1.229951 TCATGGTGAGAGGCCCCTT 60.230 57.895 0.00 0.00 0.00 3.95
173 174 1.077212 CATGGTGAGAGGCCCCTTG 60.077 63.158 0.00 0.00 0.00 3.61
174 175 2.311854 ATGGTGAGAGGCCCCTTGG 61.312 63.158 0.00 0.00 0.00 3.61
187 188 4.326255 CTTGGCCAGGACACCATC 57.674 61.111 9.80 0.00 35.42 3.51
188 189 1.379916 CTTGGCCAGGACACCATCA 59.620 57.895 9.80 0.00 35.42 3.07
189 190 0.679002 CTTGGCCAGGACACCATCAG 60.679 60.000 9.80 0.00 35.42 2.90
190 191 1.426251 TTGGCCAGGACACCATCAGT 61.426 55.000 5.11 0.00 35.42 3.41
191 192 0.546507 TGGCCAGGACACCATCAGTA 60.547 55.000 0.00 0.00 0.00 2.74
192 193 0.179000 GGCCAGGACACCATCAGTAG 59.821 60.000 0.00 0.00 0.00 2.57
193 194 0.462759 GCCAGGACACCATCAGTAGC 60.463 60.000 0.00 0.00 0.00 3.58
194 195 0.179000 CCAGGACACCATCAGTAGCC 59.821 60.000 0.00 0.00 0.00 3.93
195 196 0.179000 CAGGACACCATCAGTAGCCC 59.821 60.000 0.00 0.00 0.00 5.19
196 197 0.983378 AGGACACCATCAGTAGCCCC 60.983 60.000 0.00 0.00 0.00 5.80
197 198 0.983378 GGACACCATCAGTAGCCCCT 60.983 60.000 0.00 0.00 0.00 4.79
198 199 0.179000 GACACCATCAGTAGCCCCTG 59.821 60.000 0.00 0.00 0.00 4.45
199 200 0.252696 ACACCATCAGTAGCCCCTGA 60.253 55.000 5.48 5.48 45.06 3.86
200 201 0.911769 CACCATCAGTAGCCCCTGAA 59.088 55.000 6.98 0.00 44.21 3.02
201 202 0.912486 ACCATCAGTAGCCCCTGAAC 59.088 55.000 6.98 0.00 44.21 3.18
202 203 0.181350 CCATCAGTAGCCCCTGAACC 59.819 60.000 6.98 0.00 44.21 3.62
203 204 0.179073 CATCAGTAGCCCCTGAACCG 60.179 60.000 6.98 0.00 44.21 4.44
204 205 0.325296 ATCAGTAGCCCCTGAACCGA 60.325 55.000 6.98 0.00 44.21 4.69
205 206 0.325296 TCAGTAGCCCCTGAACCGAT 60.325 55.000 0.64 0.00 38.49 4.18
206 207 0.105039 CAGTAGCCCCTGAACCGATC 59.895 60.000 0.00 0.00 34.23 3.69
207 208 0.032017 AGTAGCCCCTGAACCGATCT 60.032 55.000 0.00 0.00 0.00 2.75
208 209 0.831307 GTAGCCCCTGAACCGATCTT 59.169 55.000 0.00 0.00 0.00 2.40
209 210 1.120530 TAGCCCCTGAACCGATCTTC 58.879 55.000 0.00 0.00 0.00 2.87
210 211 0.909610 AGCCCCTGAACCGATCTTCA 60.910 55.000 0.00 0.00 0.00 3.02
211 212 0.035439 GCCCCTGAACCGATCTTCAA 60.035 55.000 0.00 0.00 29.66 2.69
212 213 2.014068 GCCCCTGAACCGATCTTCAAG 61.014 57.143 0.00 0.00 29.66 3.02
213 214 1.373570 CCCTGAACCGATCTTCAAGC 58.626 55.000 0.00 0.00 29.66 4.01
214 215 1.065854 CCCTGAACCGATCTTCAAGCT 60.066 52.381 0.00 0.00 29.66 3.74
215 216 2.616510 CCCTGAACCGATCTTCAAGCTT 60.617 50.000 0.00 0.00 29.66 3.74
216 217 2.417933 CCTGAACCGATCTTCAAGCTTG 59.582 50.000 20.81 20.81 29.66 4.01
217 218 3.329386 CTGAACCGATCTTCAAGCTTGA 58.671 45.455 25.16 25.16 34.92 3.02
218 219 3.067106 TGAACCGATCTTCAAGCTTGAC 58.933 45.455 28.46 15.78 36.83 3.18
219 220 3.244215 TGAACCGATCTTCAAGCTTGACT 60.244 43.478 28.46 15.91 36.83 3.41
220 221 2.693069 ACCGATCTTCAAGCTTGACTG 58.307 47.619 28.46 22.25 36.83 3.51
221 222 1.396301 CCGATCTTCAAGCTTGACTGC 59.604 52.381 28.46 16.21 36.83 4.40
222 223 2.071540 CGATCTTCAAGCTTGACTGCA 58.928 47.619 28.46 13.23 36.83 4.41
223 224 2.159734 CGATCTTCAAGCTTGACTGCAC 60.160 50.000 28.46 16.63 36.83 4.57
224 225 1.220529 TCTTCAAGCTTGACTGCACG 58.779 50.000 28.46 12.43 36.83 5.34
225 226 0.940126 CTTCAAGCTTGACTGCACGT 59.060 50.000 28.46 0.00 36.83 4.49
226 227 0.937304 TTCAAGCTTGACTGCACGTC 59.063 50.000 28.46 8.75 43.14 4.34
227 228 1.202568 CAAGCTTGACTGCACGTCG 59.797 57.895 22.31 0.00 45.87 5.12
228 229 1.956170 AAGCTTGACTGCACGTCGG 60.956 57.895 0.00 7.72 45.87 4.79
229 230 3.414700 GCTTGACTGCACGTCGGG 61.415 66.667 10.41 0.00 45.87 5.14
230 231 3.414700 CTTGACTGCACGTCGGGC 61.415 66.667 13.87 13.87 45.87 6.13
231 232 4.980805 TTGACTGCACGTCGGGCC 62.981 66.667 18.47 1.59 45.87 5.80
233 234 4.760047 GACTGCACGTCGGGCCAT 62.760 66.667 18.47 4.35 32.04 4.40
234 235 4.760047 ACTGCACGTCGGGCCATC 62.760 66.667 18.47 0.00 0.00 3.51
245 246 4.408821 GGCCATCCGACCTGCACA 62.409 66.667 0.00 0.00 0.00 4.57
246 247 3.127533 GCCATCCGACCTGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
247 248 2.815211 CCATCCGACCTGCACACG 60.815 66.667 0.00 0.00 0.00 4.49
248 249 3.490759 CATCCGACCTGCACACGC 61.491 66.667 0.00 0.00 39.24 5.34
257 258 3.426545 TGCACACGCGGAAATGTT 58.573 50.000 12.47 0.00 42.97 2.71
258 259 1.730487 TGCACACGCGGAAATGTTT 59.270 47.368 12.47 0.00 42.97 2.83
259 260 0.317436 TGCACACGCGGAAATGTTTC 60.317 50.000 12.47 0.51 42.97 2.78
260 261 0.040425 GCACACGCGGAAATGTTTCT 60.040 50.000 12.47 0.00 37.35 2.52
261 262 1.673760 CACACGCGGAAATGTTTCTG 58.326 50.000 12.47 9.44 44.47 3.02
265 266 4.458164 CGGAAATGTTTCTGCGCC 57.542 55.556 4.18 0.00 36.82 6.53
266 267 1.511887 CGGAAATGTTTCTGCGCCG 60.512 57.895 4.18 0.00 36.82 6.46
267 268 1.801512 GGAAATGTTTCTGCGCCGC 60.802 57.895 4.18 0.00 37.35 6.53
268 269 1.801512 GAAATGTTTCTGCGCCGCC 60.802 57.895 6.63 0.00 34.41 6.13
269 270 2.470801 GAAATGTTTCTGCGCCGCCA 62.471 55.000 6.63 0.00 34.41 5.69
270 271 2.476534 AAATGTTTCTGCGCCGCCAG 62.477 55.000 6.63 4.26 0.00 4.85
280 281 4.440127 GCCGCCAGCCAATTGGTG 62.440 66.667 25.19 19.87 46.08 4.17
300 301 4.533318 AGGAACTCCCGTGCTACA 57.467 55.556 0.00 0.00 40.87 2.74
301 302 1.972978 AGGAACTCCCGTGCTACAC 59.027 57.895 0.00 0.00 40.87 2.90
302 303 1.079336 GGAACTCCCGTGCTACACC 60.079 63.158 0.00 0.00 0.00 4.16
303 304 1.669440 GAACTCCCGTGCTACACCA 59.331 57.895 0.00 0.00 0.00 4.17
304 305 0.034337 GAACTCCCGTGCTACACCAA 59.966 55.000 0.00 0.00 0.00 3.67
305 306 0.034896 AACTCCCGTGCTACACCAAG 59.965 55.000 0.00 0.00 0.00 3.61
306 307 0.830444 ACTCCCGTGCTACACCAAGA 60.830 55.000 0.00 0.00 0.00 3.02
307 308 0.320374 CTCCCGTGCTACACCAAGAA 59.680 55.000 0.00 0.00 0.00 2.52
308 309 0.320374 TCCCGTGCTACACCAAGAAG 59.680 55.000 0.00 0.00 0.00 2.85
309 310 0.034896 CCCGTGCTACACCAAGAAGT 59.965 55.000 0.00 0.00 0.00 3.01
310 311 1.542547 CCCGTGCTACACCAAGAAGTT 60.543 52.381 0.00 0.00 0.00 2.66
311 312 2.218603 CCGTGCTACACCAAGAAGTTT 58.781 47.619 0.00 0.00 0.00 2.66
312 313 2.616842 CCGTGCTACACCAAGAAGTTTT 59.383 45.455 0.00 0.00 0.00 2.43
313 314 3.810941 CCGTGCTACACCAAGAAGTTTTA 59.189 43.478 0.00 0.00 0.00 1.52
314 315 4.454504 CCGTGCTACACCAAGAAGTTTTAT 59.545 41.667 0.00 0.00 0.00 1.40
315 316 5.390567 CCGTGCTACACCAAGAAGTTTTATC 60.391 44.000 0.00 0.00 0.00 1.75
328 329 6.954232 AGAAGTTTTATCCGGTCTTATCCAA 58.046 36.000 0.00 0.00 0.00 3.53
337 338 0.106669 GTCTTATCCAAGGGCCCACC 60.107 60.000 27.56 0.00 40.67 4.61
375 376 2.161855 TGACCTGACAATCAACATGGC 58.838 47.619 0.00 0.00 0.00 4.40
381 382 1.063006 CAATCAACATGGCGAGCGG 59.937 57.895 0.00 0.00 0.00 5.52
438 447 0.740868 AATGGACGATGTGTGCCTCG 60.741 55.000 0.00 0.00 38.31 4.63
468 477 0.250597 AGTGTTAACGGCAACCCCTC 60.251 55.000 0.26 0.00 0.00 4.30
554 563 2.846193 TGTTGGAGAGTTTTTCCCTCG 58.154 47.619 0.00 0.00 33.62 4.63
556 565 3.072476 TGTTGGAGAGTTTTTCCCTCGAT 59.928 43.478 0.00 0.00 33.62 3.59
562 571 5.240844 GGAGAGTTTTTCCCTCGATTTTTCA 59.759 40.000 0.00 0.00 34.08 2.69
567 576 8.812147 AGTTTTTCCCTCGATTTTTCATAAAC 57.188 30.769 0.00 0.00 0.00 2.01
568 577 8.417884 AGTTTTTCCCTCGATTTTTCATAAACA 58.582 29.630 0.00 0.00 0.00 2.83
621 630 5.591067 AGAGTTGCTCTTAGTAGCTTCGTAT 59.409 40.000 0.00 0.00 43.19 3.06
661 670 2.000048 TGGAAATAGGAGGGGCAACTT 59.000 47.619 0.00 0.00 0.00 2.66
666 675 0.323629 TAGGAGGGGCAACTTGAACG 59.676 55.000 0.00 0.00 0.00 3.95
669 678 1.065709 GGAGGGGCAACTTGAACGATA 60.066 52.381 0.00 0.00 0.00 2.92
674 683 2.601763 GGGCAACTTGAACGATACTACG 59.398 50.000 0.00 0.00 39.31 3.51
675 684 3.504863 GGCAACTTGAACGATACTACGA 58.495 45.455 0.00 0.00 37.03 3.43
707 716 1.229658 AGTGGGTGAGGGGAGAAGG 60.230 63.158 0.00 0.00 0.00 3.46
710 719 1.996187 GGGTGAGGGGAGAAGGGTC 60.996 68.421 0.00 0.00 0.00 4.46
714 723 2.039137 AGGGGAGAAGGGTCGGTC 59.961 66.667 0.00 0.00 0.00 4.79
720 729 0.890683 GAGAAGGGTCGGTCCGTTAA 59.109 55.000 11.88 0.00 43.29 2.01
730 739 2.159393 TCGGTCCGTTAATTCGTGTAGG 60.159 50.000 11.88 0.00 0.00 3.18
775 784 7.064728 AGCATTTTCGGAGACAACTCTATTTAC 59.935 37.037 0.00 0.00 42.28 2.01
797 806 5.599751 ACTAAAATAAAAATGGCCCCTCCT 58.400 37.500 0.00 0.00 35.26 3.69
801 810 2.414250 AAAAATGGCCCCTCCTTCAA 57.586 45.000 0.00 0.00 35.26 2.69
826 850 2.511600 GCCCCACGTGATTCTCCG 60.512 66.667 19.30 0.00 0.00 4.63
841 866 0.739462 CTCCGCATACGCCAAAGTGA 60.739 55.000 0.00 0.00 38.22 3.41
884 910 0.175760 GCAAGTCTATCGTGAGGCCA 59.824 55.000 5.01 0.00 0.00 5.36
1189 1215 0.431984 CGCCGTAAGTAACACACGTG 59.568 55.000 15.48 15.48 33.93 4.49
1229 1255 0.103937 GCCACTAGCTAGCTCTGGTG 59.896 60.000 29.35 27.39 42.81 4.17
1230 1256 1.479709 CCACTAGCTAGCTCTGGTGT 58.520 55.000 27.83 17.09 41.98 4.16
1231 1257 1.407258 CCACTAGCTAGCTCTGGTGTC 59.593 57.143 27.83 0.00 41.98 3.67
1232 1258 2.374184 CACTAGCTAGCTCTGGTGTCT 58.626 52.381 23.26 0.00 39.69 3.41
1233 1259 2.098934 CACTAGCTAGCTCTGGTGTCTG 59.901 54.545 23.26 5.76 39.69 3.51
1234 1260 1.680735 CTAGCTAGCTCTGGTGTCTGG 59.319 57.143 23.26 0.00 0.00 3.86
1235 1261 0.252012 AGCTAGCTCTGGTGTCTGGT 60.252 55.000 12.68 0.00 0.00 4.00
1239 1265 0.901124 AGCTCTGGTGTCTGGTCATC 59.099 55.000 0.00 0.00 0.00 2.92
1258 1284 1.412710 TCCAGTTCACGACTCTTTGCT 59.587 47.619 0.00 0.00 36.10 3.91
1408 1434 2.698797 TCACTCCTCTTTTTCCACGACT 59.301 45.455 0.00 0.00 0.00 4.18
1440 1466 5.805486 TGCGAGTAGATTATTTGACAGACAC 59.195 40.000 0.00 0.00 0.00 3.67
1500 1526 1.008424 CGCGTACAGGCTCATCGAT 60.008 57.895 0.00 0.00 0.00 3.59
1648 1674 1.595929 GGTTTCGTCGAGGTGCCAA 60.596 57.895 4.85 0.00 0.00 4.52
1649 1675 1.161563 GGTTTCGTCGAGGTGCCAAA 61.162 55.000 4.85 0.00 0.00 3.28
1669 1695 6.167685 CCAAATCCTGCAATTCAATTCAGAA 58.832 36.000 9.78 0.00 0.00 3.02
1670 1696 6.651643 CCAAATCCTGCAATTCAATTCAGAAA 59.348 34.615 9.78 1.62 0.00 2.52
1671 1697 7.335924 CCAAATCCTGCAATTCAATTCAGAAAT 59.664 33.333 9.78 3.25 0.00 2.17
1674 1700 7.235935 TCCTGCAATTCAATTCAGAAATCTT 57.764 32.000 9.78 0.00 0.00 2.40
1687 1729 9.920946 AATTCAGAAATCTTATACTTTAGGGCA 57.079 29.630 0.00 0.00 0.00 5.36
1702 1744 8.181904 ACTTTAGGGCATAAAATGTATCATGG 57.818 34.615 5.80 0.00 32.98 3.66
1703 1745 8.004215 ACTTTAGGGCATAAAATGTATCATGGA 58.996 33.333 5.80 0.00 32.98 3.41
1704 1746 8.954834 TTTAGGGCATAAAATGTATCATGGAT 57.045 30.769 1.25 0.00 30.28 3.41
1705 1747 6.845758 AGGGCATAAAATGTATCATGGATG 57.154 37.500 0.00 0.00 0.00 3.51
1706 1748 5.718130 AGGGCATAAAATGTATCATGGATGG 59.282 40.000 0.00 0.00 0.00 3.51
1707 1749 5.413499 GGCATAAAATGTATCATGGATGGC 58.587 41.667 0.00 0.00 0.00 4.40
1708 1750 5.047164 GGCATAAAATGTATCATGGATGGCA 60.047 40.000 14.31 0.00 38.21 4.92
1709 1751 6.097356 GCATAAAATGTATCATGGATGGCAG 58.903 40.000 0.00 0.00 0.00 4.85
1710 1752 6.071784 GCATAAAATGTATCATGGATGGCAGA 60.072 38.462 0.00 0.00 0.00 4.26
1711 1753 7.363530 GCATAAAATGTATCATGGATGGCAGAT 60.364 37.037 0.00 0.00 0.00 2.90
1712 1754 6.585695 AAAATGTATCATGGATGGCAGATC 57.414 37.500 0.00 0.00 0.00 2.75
1713 1755 4.921644 ATGTATCATGGATGGCAGATCA 57.078 40.909 0.00 0.00 0.00 2.92
1714 1756 4.011966 TGTATCATGGATGGCAGATCAC 57.988 45.455 0.00 0.00 0.00 3.06
1720 1762 0.104855 GGATGGCAGATCACGCACTA 59.895 55.000 9.11 0.00 0.00 2.74
1781 1823 3.009143 ACAGGGATAACAGAGTGGAAACC 59.991 47.826 0.00 0.00 0.00 3.27
1818 1863 1.189752 TCTAGCAGCAACTCAGAGGG 58.810 55.000 1.53 0.00 0.00 4.30
1837 1882 0.761802 GCTGGATCGGAGGGAAAGAT 59.238 55.000 0.00 0.00 0.00 2.40
1936 1981 5.566774 CGAGTGAGATGCATTTTTCTTTCAC 59.433 40.000 0.00 7.00 0.00 3.18
1978 2023 2.666190 CAGGGAGTGTGCACGTGG 60.666 66.667 18.88 0.00 36.20 4.94
1999 2048 6.403200 CGTGGTAGGTAGAAAAATGTTCATGG 60.403 42.308 0.00 0.00 0.00 3.66
2000 2049 6.433093 GTGGTAGGTAGAAAAATGTTCATGGT 59.567 38.462 0.00 0.00 0.00 3.55
2075 2124 2.270527 GAGCCTCTTGCCCCTGTC 59.729 66.667 0.00 0.00 42.71 3.51
2094 2143 7.334090 CCCTGTCATACTGATATAATTCCAGG 58.666 42.308 0.00 0.00 35.48 4.45
2160 2209 3.492102 ACCTCATGCTTGTAACACTGT 57.508 42.857 0.00 0.00 0.00 3.55
2162 2211 5.165961 ACCTCATGCTTGTAACACTGTAT 57.834 39.130 0.00 0.00 0.00 2.29
2166 2215 7.663905 ACCTCATGCTTGTAACACTGTATTTTA 59.336 33.333 0.00 0.00 0.00 1.52
2167 2216 8.677300 CCTCATGCTTGTAACACTGTATTTTAT 58.323 33.333 0.00 0.00 0.00 1.40
2307 2356 7.802720 GCAAAAAGATTGTTTTTCACACTTGTT 59.197 29.630 1.57 0.00 33.98 2.83
2318 2367 7.953158 TTTTCACACTTGTTTGTTCAAATGA 57.047 28.000 1.33 0.00 30.60 2.57
2319 2368 8.545229 TTTTCACACTTGTTTGTTCAAATGAT 57.455 26.923 1.33 0.00 30.60 2.45
2367 2418 0.174389 GCAGAGTCATCGGCAGAGAA 59.826 55.000 0.00 0.00 44.92 2.87
2555 2611 3.505680 CCACTGCTGTGTTAAGGCAAATA 59.494 43.478 20.62 0.00 42.34 1.40
2685 2741 7.710907 TGATTTTGGTCTAATGAAGATAGACGG 59.289 37.037 7.41 0.00 46.61 4.79
2823 2879 0.983467 TCTAGATGGCCAAGTGCACA 59.017 50.000 21.04 0.00 43.89 4.57
2841 2897 5.573282 GTGCACAGTGTATCAGTTAGTACAG 59.427 44.000 13.17 0.00 31.95 2.74
2889 2945 8.877864 AAATAAAACAGAAGGTCATGGACATA 57.122 30.769 0.00 0.00 33.68 2.29
3137 3195 5.622770 AACTGCCTAAGTTCCAATAAACG 57.377 39.130 0.00 0.00 46.60 3.60
3302 3390 0.693049 AGGTCAGATGGCGTTTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
3508 3720 4.273480 CCATTTCAGTTCCCTATTACTGCG 59.727 45.833 0.00 0.00 41.16 5.18
3511 3723 3.293337 TCAGTTCCCTATTACTGCGCTA 58.707 45.455 9.73 0.00 41.16 4.26
3611 3824 2.754946 TTTTCTACGCCGACTTCCAT 57.245 45.000 0.00 0.00 0.00 3.41
3847 4060 7.504924 TGGTTCTGGTGTTAGTTTTATTCAG 57.495 36.000 0.00 0.00 0.00 3.02
3922 4135 6.365970 CCCAGTGAGGCAGTAGATATATTT 57.634 41.667 0.00 0.00 35.39 1.40
3923 4136 7.482169 CCCAGTGAGGCAGTAGATATATTTA 57.518 40.000 0.00 0.00 35.39 1.40
3924 4137 8.083828 CCCAGTGAGGCAGTAGATATATTTAT 57.916 38.462 0.00 0.00 35.39 1.40
3925 4138 8.543774 CCCAGTGAGGCAGTAGATATATTTATT 58.456 37.037 0.00 0.00 35.39 1.40
3926 4139 9.950496 CCAGTGAGGCAGTAGATATATTTATTT 57.050 33.333 0.00 0.00 0.00 1.40
3946 4159 3.829886 TTTTTGCGAATGAGGCAGTAG 57.170 42.857 0.00 0.00 42.12 2.57
3947 4160 2.760634 TTTGCGAATGAGGCAGTAGA 57.239 45.000 0.00 0.00 42.12 2.59
3948 4161 2.988010 TTGCGAATGAGGCAGTAGAT 57.012 45.000 0.00 0.00 42.12 1.98
3949 4162 4.400529 TTTGCGAATGAGGCAGTAGATA 57.599 40.909 0.00 0.00 42.12 1.98
3950 4163 4.607293 TTGCGAATGAGGCAGTAGATAT 57.393 40.909 0.00 0.00 42.12 1.63
3951 4164 5.722021 TTGCGAATGAGGCAGTAGATATA 57.278 39.130 0.00 0.00 42.12 0.86
3952 4165 5.921962 TGCGAATGAGGCAGTAGATATAT 57.078 39.130 0.00 0.00 35.04 0.86
3953 4166 7.404671 TTGCGAATGAGGCAGTAGATATATA 57.595 36.000 0.00 0.00 42.12 0.86
3954 4167 6.796426 TGCGAATGAGGCAGTAGATATATAC 58.204 40.000 0.00 0.00 35.04 1.47
3955 4168 6.377146 TGCGAATGAGGCAGTAGATATATACA 59.623 38.462 10.03 0.00 35.04 2.29
3956 4169 6.693545 GCGAATGAGGCAGTAGATATATACAC 59.306 42.308 10.03 1.79 0.00 2.90
3957 4170 7.415765 GCGAATGAGGCAGTAGATATATACACT 60.416 40.741 10.03 4.99 0.00 3.55
3958 4171 7.912773 CGAATGAGGCAGTAGATATATACACTG 59.087 40.741 16.61 16.61 41.06 3.66
4098 4319 7.468141 AATAAAGTGGGAATCTGAACCTTTC 57.532 36.000 4.71 0.00 0.00 2.62
4120 4341 8.948853 TTTCGTAACATGTGATCATCTTTTTC 57.051 30.769 0.00 0.00 31.15 2.29
4121 4342 6.761117 TCGTAACATGTGATCATCTTTTTCG 58.239 36.000 0.00 1.21 31.15 3.46
4123 4344 6.462636 CGTAACATGTGATCATCTTTTTCGTG 59.537 38.462 0.00 0.00 31.15 4.35
4126 4347 6.969366 ACATGTGATCATCTTTTTCGTGAAA 58.031 32.000 0.00 0.00 31.15 2.69
4127 4348 7.424803 ACATGTGATCATCTTTTTCGTGAAAA 58.575 30.769 0.00 3.74 33.97 2.29
4284 4506 7.596248 TGCACTATTCTTTTCTTGAAATTCTGC 59.404 33.333 0.00 0.00 0.00 4.26
4285 4507 7.596248 GCACTATTCTTTTCTTGAAATTCTGCA 59.404 33.333 0.00 0.00 0.00 4.41
4289 4511 7.703298 TTCTTTTCTTGAAATTCTGCATGTG 57.297 32.000 0.00 0.00 0.00 3.21
4349 4571 3.563808 GCCATCATTATCACCGTGCTTTA 59.436 43.478 0.00 0.00 0.00 1.85
4369 4591 3.150458 ACCTTTGCACCCTTAGTTACC 57.850 47.619 0.00 0.00 0.00 2.85
4803 5158 2.184322 CCGCTCGCCAGCTTAGAA 59.816 61.111 0.79 0.00 44.40 2.10
4808 5163 1.927895 CTCGCCAGCTTAGAAATCGT 58.072 50.000 0.00 0.00 0.00 3.73
4846 5201 2.746362 CTGACAAATGTCTCCCTCTTGC 59.254 50.000 14.15 0.00 44.99 4.01
4871 5226 2.429610 GCCCAGAAACTGCATCATTGAT 59.570 45.455 0.00 0.00 0.00 2.57
4910 5265 4.646492 GGGAAGAATGTGACCATTGCTAAT 59.354 41.667 0.00 0.00 41.37 1.73
4975 5330 7.495606 TCAAGAACAGTCGCATAATGAATATGT 59.504 33.333 0.00 0.00 42.89 2.29
4981 5336 9.440773 ACAGTCGCATAATGAATATGTATCAAT 57.559 29.630 0.00 0.00 42.89 2.57
5049 5404 2.222596 GCGTTCGTCTGAAATGCTACTG 60.223 50.000 0.21 0.00 35.78 2.74
5051 5406 3.428870 CGTTCGTCTGAAATGCTACTGTT 59.571 43.478 0.00 0.00 35.46 3.16
5052 5407 4.433022 CGTTCGTCTGAAATGCTACTGTTC 60.433 45.833 0.00 0.00 35.46 3.18
5053 5408 4.251543 TCGTCTGAAATGCTACTGTTCA 57.748 40.909 0.00 0.00 0.00 3.18
5054 5409 4.820897 TCGTCTGAAATGCTACTGTTCAT 58.179 39.130 0.00 0.00 31.21 2.57
5055 5410 5.237815 TCGTCTGAAATGCTACTGTTCATT 58.762 37.500 0.00 0.00 34.66 2.57
5056 5411 5.700832 TCGTCTGAAATGCTACTGTTCATTT 59.299 36.000 15.69 15.69 43.28 2.32
5057 5412 5.791974 CGTCTGAAATGCTACTGTTCATTTG 59.208 40.000 18.76 10.14 41.40 2.32
5058 5413 6.347644 CGTCTGAAATGCTACTGTTCATTTGA 60.348 38.462 18.76 12.85 41.40 2.69
5066 5421 7.692460 TGCTACTGTTCATTTGATCATTTCT 57.308 32.000 0.00 0.00 0.00 2.52
5075 5430 8.514594 GTTCATTTGATCATTTCTAGTGAACCA 58.485 33.333 16.19 0.00 43.88 3.67
5080 5435 4.553330 TCATTTCTAGTGAACCACCCTC 57.447 45.455 0.00 0.00 34.49 4.30
5103 5459 2.257034 GAGTTGGTGTCGTCCGAATAC 58.743 52.381 0.00 0.00 0.00 1.89
5153 5509 0.400213 TTGCAGGGTGTACAGGAAGG 59.600 55.000 0.00 0.00 0.00 3.46
5214 5570 1.134521 ACGGTTGTGCTGAAGAACTCA 60.135 47.619 0.00 0.00 32.66 3.41
5251 5607 8.442632 TGGATTAGTCATATGAGCTGAAAAAG 57.557 34.615 5.42 0.00 0.00 2.27
5252 5608 8.267183 TGGATTAGTCATATGAGCTGAAAAAGA 58.733 33.333 5.42 0.00 0.00 2.52
5254 5610 9.323985 GATTAGTCATATGAGCTGAAAAAGAGT 57.676 33.333 5.42 0.00 0.00 3.24
5255 5611 8.709386 TTAGTCATATGAGCTGAAAAAGAGTC 57.291 34.615 5.42 0.00 0.00 3.36
5264 5622 4.102367 AGCTGAAAAAGAGTCTCTCCAGTT 59.898 41.667 1.96 4.35 0.00 3.16
5315 5673 2.614057 GTCTTCCAATAAGATGCGTGGG 59.386 50.000 0.00 0.00 0.00 4.61
5404 5762 8.003784 GTCACCGAATTGCTTTAAAAATTCAAG 58.996 33.333 18.63 13.69 41.02 3.02
5408 5766 9.191995 CCGAATTGCTTTAAAAATTCAAGTAGT 57.808 29.630 18.63 0.00 41.02 2.73
5423 5781 9.507329 AATTCAAGTAGTGTTATCAACATGACT 57.493 29.630 0.00 0.04 44.35 3.41
5465 5823 4.957296 ACAGAAAACTTCCGTATGTCACT 58.043 39.130 0.00 0.00 0.00 3.41
5575 5975 8.655651 TTAAATTTTGTTTGAACCTAGCTTGG 57.344 30.769 13.05 13.05 0.00 3.61
5582 5982 6.883744 TGTTTGAACCTAGCTTGGAATTTTT 58.116 32.000 21.63 3.89 0.00 1.94
5596 5996 8.925700 GCTTGGAATTTTTGAGGTTACAAATAG 58.074 33.333 0.00 0.00 39.09 1.73
5697 6113 2.462255 CTTGTGTGCACATCCACCGC 62.462 60.000 24.69 8.68 41.52 5.68
5772 6188 2.010145 TCGAAGAGGAAAGCCAATCG 57.990 50.000 0.00 0.00 37.22 3.34
5851 6267 4.114794 GCATCATGGGTTTTCATACTTGC 58.885 43.478 0.00 0.00 0.00 4.01
5869 6285 3.058160 GCACTGCCACGCCATTCT 61.058 61.111 0.00 0.00 0.00 2.40
5911 6327 1.227999 GGCAGCAAACACTCACGCTA 61.228 55.000 0.00 0.00 32.29 4.26
5955 6372 2.125512 GTGCAGCGAGGGAACGAT 60.126 61.111 0.00 0.00 35.09 3.73
6022 6443 1.078709 CGCTGATGATGGTTTGTCGT 58.921 50.000 0.00 0.00 0.00 4.34
6073 6494 2.355115 GGTCGCCCCTCCATGTTT 59.645 61.111 0.00 0.00 0.00 2.83
6074 6495 1.749258 GGTCGCCCCTCCATGTTTC 60.749 63.158 0.00 0.00 0.00 2.78
6167 6591 0.601558 AGAACTACTCTCGCGGCAAA 59.398 50.000 6.13 0.00 0.00 3.68
6203 6627 1.692411 GGGGGCAAATGATGTACTCC 58.308 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.312390 GAGGACTCTGTCTCCCCATAC 58.688 57.143 0.00 0.00 32.47 2.39
3 4 1.388531 GGAGGACTCTGTCTCCCCA 59.611 63.158 0.00 0.00 32.47 4.96
4 5 0.031616 ATGGAGGACTCTGTCTCCCC 60.032 60.000 6.88 1.86 32.72 4.81
5 6 1.118838 CATGGAGGACTCTGTCTCCC 58.881 60.000 6.88 3.90 32.72 4.30
6 7 2.151502 TCATGGAGGACTCTGTCTCC 57.848 55.000 0.00 0.00 33.59 3.71
7 8 3.068024 GTGATCATGGAGGACTCTGTCTC 59.932 52.174 0.00 0.00 32.47 3.36
8 9 3.030291 GTGATCATGGAGGACTCTGTCT 58.970 50.000 0.00 0.00 32.47 3.41
9 10 2.762887 TGTGATCATGGAGGACTCTGTC 59.237 50.000 0.00 0.00 0.00 3.51
10 11 2.825223 TGTGATCATGGAGGACTCTGT 58.175 47.619 0.00 0.00 0.00 3.41
11 12 3.197333 AGTTGTGATCATGGAGGACTCTG 59.803 47.826 0.00 0.00 0.00 3.35
12 13 3.448934 AGTTGTGATCATGGAGGACTCT 58.551 45.455 0.00 0.00 0.00 3.24
13 14 3.902881 AGTTGTGATCATGGAGGACTC 57.097 47.619 0.00 0.00 0.00 3.36
14 15 3.843027 AGAAGTTGTGATCATGGAGGACT 59.157 43.478 0.00 0.00 0.00 3.85
15 16 4.213564 AGAAGTTGTGATCATGGAGGAC 57.786 45.455 0.00 0.00 0.00 3.85
16 17 4.042062 ACAAGAAGTTGTGATCATGGAGGA 59.958 41.667 0.00 0.00 45.58 3.71
17 18 4.330250 ACAAGAAGTTGTGATCATGGAGG 58.670 43.478 0.00 0.00 45.58 4.30
29 30 1.191096 GCGTGCAACACAAGAAGTTG 58.809 50.000 0.00 0.00 46.86 3.16
30 31 0.100503 GGCGTGCAACACAAGAAGTT 59.899 50.000 0.00 0.00 35.74 2.66
31 32 1.029408 TGGCGTGCAACACAAGAAGT 61.029 50.000 0.00 0.00 35.74 3.01
32 33 0.100325 TTGGCGTGCAACACAAGAAG 59.900 50.000 0.00 0.00 35.74 2.85
33 34 2.184323 TTGGCGTGCAACACAAGAA 58.816 47.368 0.00 0.00 35.74 2.52
34 35 3.911137 TTGGCGTGCAACACAAGA 58.089 50.000 0.00 0.00 35.74 3.02
35 36 4.307258 CTTGGCGTGCAACACAAG 57.693 55.556 10.04 10.04 42.38 3.16
36 37 2.103934 GCTTGGCGTGCAACACAA 59.896 55.556 0.00 0.00 35.74 3.33
37 38 3.898509 GGCTTGGCGTGCAACACA 61.899 61.111 0.00 0.00 35.74 3.72
38 39 2.627510 AAAGGCTTGGCGTGCAACAC 62.628 55.000 0.00 0.00 35.74 3.32
39 40 1.954362 AAAAGGCTTGGCGTGCAACA 61.954 50.000 0.00 0.00 35.74 3.33
40 41 1.227234 AAAAGGCTTGGCGTGCAAC 60.227 52.632 0.00 0.00 0.00 4.17
41 42 1.227205 CAAAAGGCTTGGCGTGCAA 60.227 52.632 0.00 0.00 0.00 4.08
42 43 2.416678 CAAAAGGCTTGGCGTGCA 59.583 55.556 0.00 0.00 0.00 4.57
43 44 2.356194 CCAAAAGGCTTGGCGTGC 60.356 61.111 0.00 0.00 32.18 5.34
44 45 1.286880 CTCCAAAAGGCTTGGCGTG 59.713 57.895 0.00 0.00 39.38 5.34
45 46 1.152756 ACTCCAAAAGGCTTGGCGT 60.153 52.632 0.00 0.00 39.38 5.68
46 47 0.890996 AGACTCCAAAAGGCTTGGCG 60.891 55.000 0.00 0.00 42.49 5.69
47 48 3.042481 AGACTCCAAAAGGCTTGGC 57.958 52.632 0.00 0.00 42.49 4.52
52 53 7.489435 GCAAATAATAGAAAGACTCCAAAAGGC 59.511 37.037 0.00 0.00 0.00 4.35
53 54 7.976175 GGCAAATAATAGAAAGACTCCAAAAGG 59.024 37.037 0.00 0.00 0.00 3.11
54 55 8.522830 TGGCAAATAATAGAAAGACTCCAAAAG 58.477 33.333 0.00 0.00 0.00 2.27
55 56 8.415950 TGGCAAATAATAGAAAGACTCCAAAA 57.584 30.769 0.00 0.00 0.00 2.44
56 57 8.469200 CATGGCAAATAATAGAAAGACTCCAAA 58.531 33.333 0.00 0.00 0.00 3.28
57 58 7.068593 CCATGGCAAATAATAGAAAGACTCCAA 59.931 37.037 0.00 0.00 0.00 3.53
58 59 6.547141 CCATGGCAAATAATAGAAAGACTCCA 59.453 38.462 0.00 0.00 0.00 3.86
59 60 6.015940 CCCATGGCAAATAATAGAAAGACTCC 60.016 42.308 6.09 0.00 0.00 3.85
60 61 6.974965 CCCATGGCAAATAATAGAAAGACTC 58.025 40.000 6.09 0.00 0.00 3.36
61 62 6.966534 CCCATGGCAAATAATAGAAAGACT 57.033 37.500 6.09 0.00 0.00 3.24
88 89 0.251742 TCATCTTGGGCCACTTTGGG 60.252 55.000 5.23 0.00 38.19 4.12
89 90 1.631405 TTCATCTTGGGCCACTTTGG 58.369 50.000 5.23 0.00 41.55 3.28
90 91 2.289010 GGTTTCATCTTGGGCCACTTTG 60.289 50.000 5.23 3.82 0.00 2.77
91 92 1.970640 GGTTTCATCTTGGGCCACTTT 59.029 47.619 5.23 0.00 0.00 2.66
92 93 1.632589 GGTTTCATCTTGGGCCACTT 58.367 50.000 5.23 0.00 0.00 3.16
93 94 0.609131 CGGTTTCATCTTGGGCCACT 60.609 55.000 5.23 0.00 0.00 4.00
94 95 0.608035 TCGGTTTCATCTTGGGCCAC 60.608 55.000 5.23 0.00 0.00 5.01
95 96 0.608035 GTCGGTTTCATCTTGGGCCA 60.608 55.000 0.00 0.00 0.00 5.36
96 97 0.608035 TGTCGGTTTCATCTTGGGCC 60.608 55.000 0.00 0.00 0.00 5.80
97 98 0.804989 CTGTCGGTTTCATCTTGGGC 59.195 55.000 0.00 0.00 0.00 5.36
98 99 2.350522 CTCTGTCGGTTTCATCTTGGG 58.649 52.381 0.00 0.00 0.00 4.12
99 100 2.350522 CCTCTGTCGGTTTCATCTTGG 58.649 52.381 0.00 0.00 0.00 3.61
100 101 2.350522 CCCTCTGTCGGTTTCATCTTG 58.649 52.381 0.00 0.00 0.00 3.02
101 102 1.279271 CCCCTCTGTCGGTTTCATCTT 59.721 52.381 0.00 0.00 0.00 2.40
102 103 0.905357 CCCCTCTGTCGGTTTCATCT 59.095 55.000 0.00 0.00 0.00 2.90
103 104 0.107654 CCCCCTCTGTCGGTTTCATC 60.108 60.000 0.00 0.00 0.00 2.92
104 105 0.840722 ACCCCCTCTGTCGGTTTCAT 60.841 55.000 0.00 0.00 0.00 2.57
105 106 0.178926 TACCCCCTCTGTCGGTTTCA 60.179 55.000 0.00 0.00 0.00 2.69
106 107 0.248565 GTACCCCCTCTGTCGGTTTC 59.751 60.000 0.00 0.00 0.00 2.78
107 108 0.178912 AGTACCCCCTCTGTCGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
108 109 0.706433 TAGTACCCCCTCTGTCGGTT 59.294 55.000 0.00 0.00 0.00 4.44
109 110 0.706433 TTAGTACCCCCTCTGTCGGT 59.294 55.000 0.00 0.00 0.00 4.69
110 111 1.479730 GTTTAGTACCCCCTCTGTCGG 59.520 57.143 0.00 0.00 0.00 4.79
111 112 2.426381 GAGTTTAGTACCCCCTCTGTCG 59.574 54.545 0.00 0.00 0.00 4.35
112 113 2.426381 CGAGTTTAGTACCCCCTCTGTC 59.574 54.545 0.00 0.00 0.00 3.51
113 114 2.454538 CGAGTTTAGTACCCCCTCTGT 58.545 52.381 0.00 0.00 0.00 3.41
114 115 1.755380 CCGAGTTTAGTACCCCCTCTG 59.245 57.143 0.00 0.00 0.00 3.35
115 116 1.963857 GCCGAGTTTAGTACCCCCTCT 60.964 57.143 0.00 0.00 0.00 3.69
116 117 0.463204 GCCGAGTTTAGTACCCCCTC 59.537 60.000 0.00 0.00 0.00 4.30
117 118 0.979709 GGCCGAGTTTAGTACCCCCT 60.980 60.000 0.00 0.00 0.00 4.79
118 119 1.524002 GGCCGAGTTTAGTACCCCC 59.476 63.158 0.00 0.00 0.00 5.40
119 120 1.266867 TGGGCCGAGTTTAGTACCCC 61.267 60.000 0.00 0.00 36.45 4.95
120 121 0.107993 GTGGGCCGAGTTTAGTACCC 60.108 60.000 0.00 0.00 37.88 3.69
121 122 0.107993 GGTGGGCCGAGTTTAGTACC 60.108 60.000 0.00 0.00 0.00 3.34
122 123 0.609662 TGGTGGGCCGAGTTTAGTAC 59.390 55.000 0.00 0.00 37.67 2.73
123 124 0.899720 CTGGTGGGCCGAGTTTAGTA 59.100 55.000 0.00 0.00 37.67 1.82
124 125 1.677552 CTGGTGGGCCGAGTTTAGT 59.322 57.895 0.00 0.00 37.67 2.24
125 126 1.078426 CCTGGTGGGCCGAGTTTAG 60.078 63.158 0.00 0.00 37.67 1.85
126 127 3.074281 CCTGGTGGGCCGAGTTTA 58.926 61.111 0.00 0.00 37.67 2.01
135 136 2.352805 GACTCTTGGCCTGGTGGG 59.647 66.667 3.32 0.00 38.36 4.61
136 137 2.046892 CGACTCTTGGCCTGGTGG 60.047 66.667 3.32 0.00 0.00 4.61
137 138 1.374758 GACGACTCTTGGCCTGGTG 60.375 63.158 3.32 0.00 0.00 4.17
138 139 1.194781 ATGACGACTCTTGGCCTGGT 61.195 55.000 3.32 0.00 0.00 4.00
139 140 0.742281 CATGACGACTCTTGGCCTGG 60.742 60.000 3.32 0.00 0.00 4.45
140 141 0.742281 CCATGACGACTCTTGGCCTG 60.742 60.000 3.32 0.00 35.51 4.85
141 142 1.194781 ACCATGACGACTCTTGGCCT 61.195 55.000 3.32 0.00 42.94 5.19
142 143 1.021390 CACCATGACGACTCTTGGCC 61.021 60.000 0.00 0.00 42.94 5.36
143 144 0.037326 TCACCATGACGACTCTTGGC 60.037 55.000 7.60 0.00 42.94 4.52
144 145 1.546029 TCTCACCATGACGACTCTTGG 59.454 52.381 0.00 6.45 44.16 3.61
145 146 2.416566 CCTCTCACCATGACGACTCTTG 60.417 54.545 0.00 0.00 0.00 3.02
146 147 1.821753 CCTCTCACCATGACGACTCTT 59.178 52.381 0.00 0.00 0.00 2.85
147 148 1.468985 CCTCTCACCATGACGACTCT 58.531 55.000 0.00 0.00 0.00 3.24
148 149 0.179124 GCCTCTCACCATGACGACTC 60.179 60.000 0.00 0.00 0.00 3.36
149 150 1.608717 GGCCTCTCACCATGACGACT 61.609 60.000 0.00 0.00 0.00 4.18
150 151 1.153549 GGCCTCTCACCATGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
151 152 2.359169 GGGCCTCTCACCATGACGA 61.359 63.158 0.84 0.00 0.00 4.20
152 153 2.187946 GGGCCTCTCACCATGACG 59.812 66.667 0.84 0.00 0.00 4.35
153 154 1.566298 AAGGGGCCTCTCACCATGAC 61.566 60.000 5.00 0.00 0.00 3.06
154 155 1.229951 AAGGGGCCTCTCACCATGA 60.230 57.895 5.00 0.00 0.00 3.07
155 156 1.077212 CAAGGGGCCTCTCACCATG 60.077 63.158 5.00 0.00 0.00 3.66
156 157 2.311854 CCAAGGGGCCTCTCACCAT 61.312 63.158 5.00 0.00 0.00 3.55
157 158 2.935481 CCAAGGGGCCTCTCACCA 60.935 66.667 5.00 0.00 0.00 4.17
170 171 0.679002 CTGATGGTGTCCTGGCCAAG 60.679 60.000 7.01 0.00 38.38 3.61
171 172 1.379916 CTGATGGTGTCCTGGCCAA 59.620 57.895 7.01 0.00 38.38 4.52
172 173 0.546507 TACTGATGGTGTCCTGGCCA 60.547 55.000 4.71 4.71 39.33 5.36
173 174 0.179000 CTACTGATGGTGTCCTGGCC 59.821 60.000 0.00 0.00 0.00 5.36
174 175 0.462759 GCTACTGATGGTGTCCTGGC 60.463 60.000 0.00 0.00 0.00 4.85
175 176 0.179000 GGCTACTGATGGTGTCCTGG 59.821 60.000 0.00 0.00 0.00 4.45
176 177 0.179000 GGGCTACTGATGGTGTCCTG 59.821 60.000 0.00 0.00 0.00 3.86
177 178 0.983378 GGGGCTACTGATGGTGTCCT 60.983 60.000 0.00 0.00 0.00 3.85
178 179 0.983378 AGGGGCTACTGATGGTGTCC 60.983 60.000 0.00 0.00 0.00 4.02
179 180 0.179000 CAGGGGCTACTGATGGTGTC 59.821 60.000 4.11 0.00 40.97 3.67
180 181 0.252696 TCAGGGGCTACTGATGGTGT 60.253 55.000 8.07 0.00 42.26 4.16
181 182 0.911769 TTCAGGGGCTACTGATGGTG 59.088 55.000 11.97 0.00 46.07 4.17
182 183 0.912486 GTTCAGGGGCTACTGATGGT 59.088 55.000 11.97 0.00 46.07 3.55
183 184 0.181350 GGTTCAGGGGCTACTGATGG 59.819 60.000 11.97 0.00 46.07 3.51
184 185 0.179073 CGGTTCAGGGGCTACTGATG 60.179 60.000 11.97 3.99 46.07 3.07
185 186 0.325296 TCGGTTCAGGGGCTACTGAT 60.325 55.000 11.97 0.00 46.07 2.90
186 187 0.325296 ATCGGTTCAGGGGCTACTGA 60.325 55.000 8.07 8.07 45.22 3.41
187 188 0.105039 GATCGGTTCAGGGGCTACTG 59.895 60.000 3.81 3.81 39.84 2.74
188 189 0.032017 AGATCGGTTCAGGGGCTACT 60.032 55.000 0.00 0.00 0.00 2.57
189 190 0.831307 AAGATCGGTTCAGGGGCTAC 59.169 55.000 0.00 0.00 0.00 3.58
190 191 1.120530 GAAGATCGGTTCAGGGGCTA 58.879 55.000 0.00 0.00 0.00 3.93
191 192 0.909610 TGAAGATCGGTTCAGGGGCT 60.910 55.000 0.00 0.00 32.54 5.19
192 193 0.035439 TTGAAGATCGGTTCAGGGGC 60.035 55.000 0.00 0.00 37.72 5.80
193 194 2.014068 GCTTGAAGATCGGTTCAGGGG 61.014 57.143 0.00 1.69 37.72 4.79
194 195 1.065854 AGCTTGAAGATCGGTTCAGGG 60.066 52.381 0.00 3.52 37.72 4.45
195 196 2.393271 AGCTTGAAGATCGGTTCAGG 57.607 50.000 0.00 3.30 37.72 3.86
196 197 3.124297 GTCAAGCTTGAAGATCGGTTCAG 59.876 47.826 29.99 0.00 39.21 3.02
197 198 3.067106 GTCAAGCTTGAAGATCGGTTCA 58.933 45.455 29.99 1.07 39.21 3.18
198 199 3.124297 CAGTCAAGCTTGAAGATCGGTTC 59.876 47.826 29.99 14.38 39.21 3.62
199 200 3.070018 CAGTCAAGCTTGAAGATCGGTT 58.930 45.455 29.99 6.46 39.21 4.44
200 201 2.693069 CAGTCAAGCTTGAAGATCGGT 58.307 47.619 29.99 6.86 39.21 4.69
201 202 1.396301 GCAGTCAAGCTTGAAGATCGG 59.604 52.381 29.99 18.43 39.21 4.18
202 203 2.071540 TGCAGTCAAGCTTGAAGATCG 58.928 47.619 29.99 16.82 39.21 3.69
203 204 2.159734 CGTGCAGTCAAGCTTGAAGATC 60.160 50.000 29.99 17.59 39.21 2.75
204 205 1.802960 CGTGCAGTCAAGCTTGAAGAT 59.197 47.619 29.99 16.36 39.21 2.40
205 206 1.220529 CGTGCAGTCAAGCTTGAAGA 58.779 50.000 29.99 11.71 39.21 2.87
206 207 0.940126 ACGTGCAGTCAAGCTTGAAG 59.060 50.000 29.99 24.42 39.21 3.02
207 208 3.079131 ACGTGCAGTCAAGCTTGAA 57.921 47.368 29.99 12.59 39.21 2.69
208 209 4.855105 ACGTGCAGTCAAGCTTGA 57.145 50.000 25.16 25.16 34.99 3.02
216 217 4.760047 ATGGCCCGACGTGCAGTC 62.760 66.667 4.36 0.00 46.16 3.51
217 218 4.760047 GATGGCCCGACGTGCAGT 62.760 66.667 4.36 0.00 0.00 4.40
228 229 4.408821 TGTGCAGGTCGGATGGCC 62.409 66.667 0.00 0.00 0.00 5.36
229 230 3.127533 GTGTGCAGGTCGGATGGC 61.128 66.667 0.00 0.00 0.00 4.40
230 231 2.815211 CGTGTGCAGGTCGGATGG 60.815 66.667 0.00 0.00 0.00 3.51
231 232 3.490759 GCGTGTGCAGGTCGGATG 61.491 66.667 0.00 0.00 42.15 3.51
236 237 2.325082 ATTTCCGCGTGTGCAGGTC 61.325 57.895 4.92 0.00 42.97 3.85
237 238 2.281484 ATTTCCGCGTGTGCAGGT 60.281 55.556 4.92 0.00 42.97 4.00
238 239 2.128853 AACATTTCCGCGTGTGCAGG 62.129 55.000 4.92 0.00 42.97 4.85
239 240 0.317770 AAACATTTCCGCGTGTGCAG 60.318 50.000 4.92 0.00 42.97 4.41
240 241 0.317436 GAAACATTTCCGCGTGTGCA 60.317 50.000 4.92 0.00 42.97 4.57
241 242 0.040425 AGAAACATTTCCGCGTGTGC 60.040 50.000 4.92 0.00 37.92 4.57
242 243 1.673760 CAGAAACATTTCCGCGTGTG 58.326 50.000 4.92 0.18 37.92 3.82
243 244 0.040425 GCAGAAACATTTCCGCGTGT 60.040 50.000 4.92 0.00 37.92 4.49
244 245 2.712077 GCAGAAACATTTCCGCGTG 58.288 52.632 4.92 0.00 37.92 5.34
247 248 1.801512 GGCGCAGAAACATTTCCGC 60.802 57.895 10.83 15.35 37.92 5.54
248 249 1.511887 CGGCGCAGAAACATTTCCG 60.512 57.895 10.83 0.00 37.92 4.30
249 250 1.801512 GCGGCGCAGAAACATTTCC 60.802 57.895 29.21 0.00 37.92 3.13
250 251 1.801512 GGCGGCGCAGAAACATTTC 60.802 57.895 34.36 8.04 37.45 2.17
251 252 2.258286 GGCGGCGCAGAAACATTT 59.742 55.556 34.36 0.00 0.00 2.32
252 253 2.981560 CTGGCGGCGCAGAAACATT 61.982 57.895 34.36 0.00 0.00 2.71
253 254 3.434319 CTGGCGGCGCAGAAACAT 61.434 61.111 34.36 0.00 0.00 2.71
263 264 4.440127 CACCAATTGGCTGGCGGC 62.440 66.667 24.79 10.59 40.45 6.53
264 265 3.762247 CCACCAATTGGCTGGCGG 61.762 66.667 24.79 12.94 40.45 6.13
265 266 3.762247 CCCACCAATTGGCTGGCG 61.762 66.667 27.61 20.55 45.37 5.69
266 267 2.283821 TCCCACCAATTGGCTGGC 60.284 61.111 27.61 0.00 45.37 4.85
267 268 1.683365 CCTCCCACCAATTGGCTGG 60.683 63.158 26.72 26.72 45.37 4.85
268 269 0.251742 TTCCTCCCACCAATTGGCTG 60.252 55.000 24.79 19.52 45.37 4.85
269 270 0.251787 GTTCCTCCCACCAATTGGCT 60.252 55.000 24.79 9.00 45.37 4.75
270 271 0.251787 AGTTCCTCCCACCAATTGGC 60.252 55.000 24.79 4.63 45.37 4.52
271 272 1.616994 GGAGTTCCTCCCACCAATTGG 60.617 57.143 23.31 23.31 44.36 3.16
272 273 1.839424 GGAGTTCCTCCCACCAATTG 58.161 55.000 0.00 0.00 44.36 2.32
282 283 0.108756 GTGTAGCACGGGAGTTCCTC 60.109 60.000 0.00 0.00 44.67 3.71
283 284 1.542187 GGTGTAGCACGGGAGTTCCT 61.542 60.000 0.00 0.00 44.67 3.36
284 285 1.079336 GGTGTAGCACGGGAGTTCC 60.079 63.158 0.00 0.00 44.67 3.62
285 286 0.034337 TTGGTGTAGCACGGGAGTTC 59.966 55.000 0.00 0.00 44.67 3.01
286 287 0.034896 CTTGGTGTAGCACGGGAGTT 59.965 55.000 0.00 0.00 44.67 3.01
288 289 0.320374 TTCTTGGTGTAGCACGGGAG 59.680 55.000 0.00 0.00 34.83 4.30
289 290 0.320374 CTTCTTGGTGTAGCACGGGA 59.680 55.000 0.00 0.00 34.83 5.14
290 291 0.034896 ACTTCTTGGTGTAGCACGGG 59.965 55.000 0.00 0.00 34.83 5.28
291 292 1.878953 AACTTCTTGGTGTAGCACGG 58.121 50.000 0.00 0.00 34.83 4.94
292 293 3.963383 AAAACTTCTTGGTGTAGCACG 57.037 42.857 0.00 0.00 34.83 5.34
293 294 5.390567 CGGATAAAACTTCTTGGTGTAGCAC 60.391 44.000 0.00 0.00 0.00 4.40
294 295 4.693566 CGGATAAAACTTCTTGGTGTAGCA 59.306 41.667 0.00 0.00 0.00 3.49
295 296 4.094442 CCGGATAAAACTTCTTGGTGTAGC 59.906 45.833 0.00 0.00 0.00 3.58
296 297 5.243207 ACCGGATAAAACTTCTTGGTGTAG 58.757 41.667 9.46 0.00 0.00 2.74
297 298 5.012354 AGACCGGATAAAACTTCTTGGTGTA 59.988 40.000 9.46 0.00 0.00 2.90
298 299 4.070009 GACCGGATAAAACTTCTTGGTGT 58.930 43.478 9.46 0.00 0.00 4.16
299 300 4.324267 AGACCGGATAAAACTTCTTGGTG 58.676 43.478 9.46 0.00 0.00 4.17
300 301 4.635699 AGACCGGATAAAACTTCTTGGT 57.364 40.909 9.46 0.00 0.00 3.67
301 302 6.260271 GGATAAGACCGGATAAAACTTCTTGG 59.740 42.308 9.46 0.00 0.00 3.61
302 303 6.821665 TGGATAAGACCGGATAAAACTTCTTG 59.178 38.462 9.46 0.00 0.00 3.02
303 304 6.954232 TGGATAAGACCGGATAAAACTTCTT 58.046 36.000 9.46 6.70 0.00 2.52
304 305 6.555463 TGGATAAGACCGGATAAAACTTCT 57.445 37.500 9.46 0.00 0.00 2.85
305 306 6.260271 CCTTGGATAAGACCGGATAAAACTTC 59.740 42.308 9.46 0.00 35.92 3.01
306 307 6.120220 CCTTGGATAAGACCGGATAAAACTT 58.880 40.000 9.46 6.26 35.92 2.66
307 308 5.397559 CCCTTGGATAAGACCGGATAAAACT 60.398 44.000 9.46 0.00 35.92 2.66
308 309 4.820173 CCCTTGGATAAGACCGGATAAAAC 59.180 45.833 9.46 0.00 35.92 2.43
309 310 4.687769 GCCCTTGGATAAGACCGGATAAAA 60.688 45.833 9.46 0.00 35.92 1.52
310 311 3.181448 GCCCTTGGATAAGACCGGATAAA 60.181 47.826 9.46 0.00 35.92 1.40
311 312 2.370849 GCCCTTGGATAAGACCGGATAA 59.629 50.000 9.46 0.00 35.92 1.75
312 313 1.975680 GCCCTTGGATAAGACCGGATA 59.024 52.381 9.46 0.00 35.92 2.59
313 314 0.765510 GCCCTTGGATAAGACCGGAT 59.234 55.000 9.46 0.00 35.92 4.18
314 315 1.342672 GGCCCTTGGATAAGACCGGA 61.343 60.000 9.46 0.00 35.92 5.14
315 316 1.148498 GGCCCTTGGATAAGACCGG 59.852 63.158 0.00 0.00 35.92 5.28
337 338 3.313012 TCAAGGATGACACGTGGTAAG 57.687 47.619 21.57 1.34 0.00 2.34
359 360 1.202110 GCTCGCCATGTTGATTGTCAG 60.202 52.381 0.00 0.00 0.00 3.51
404 405 3.018856 GTCCATTTGATGAGATGTGGCA 58.981 45.455 0.00 0.00 0.00 4.92
438 447 1.593006 CGTTAACACTCATGCGGGATC 59.407 52.381 6.39 0.00 0.00 3.36
468 477 1.531149 GTTAATGATGCACGGGGATCG 59.469 52.381 14.85 0.00 44.12 3.69
521 530 5.953571 ACTCTCCAACAATTCCCTTAAACT 58.046 37.500 0.00 0.00 0.00 2.66
532 541 3.821033 CGAGGGAAAAACTCTCCAACAAT 59.179 43.478 0.00 0.00 42.76 2.71
584 593 5.611374 AGAGCAACTCTAGCACTTTTGTAA 58.389 37.500 0.00 0.00 39.28 2.41
588 597 5.859495 ACTAAGAGCAACTCTAGCACTTTT 58.141 37.500 3.43 0.00 40.28 2.27
621 630 9.747898 ATTTCCATTACTAGAAACCACAATGTA 57.252 29.630 0.00 0.00 34.97 2.29
649 658 0.322546 ATCGTTCAAGTTGCCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
683 692 0.836400 TCCCCTCACCCACTCTCAAC 60.836 60.000 0.00 0.00 0.00 3.18
684 693 0.545309 CTCCCCTCACCCACTCTCAA 60.545 60.000 0.00 0.00 0.00 3.02
685 694 1.079256 CTCCCCTCACCCACTCTCA 59.921 63.158 0.00 0.00 0.00 3.27
686 695 0.252284 TTCTCCCCTCACCCACTCTC 60.252 60.000 0.00 0.00 0.00 3.20
687 696 0.252467 CTTCTCCCCTCACCCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
688 697 1.268283 CCTTCTCCCCTCACCCACTC 61.268 65.000 0.00 0.00 0.00 3.51
689 698 1.229658 CCTTCTCCCCTCACCCACT 60.230 63.158 0.00 0.00 0.00 4.00
690 699 2.301738 CCCTTCTCCCCTCACCCAC 61.302 68.421 0.00 0.00 0.00 4.61
691 700 2.124996 CCCTTCTCCCCTCACCCA 59.875 66.667 0.00 0.00 0.00 4.51
692 701 1.996187 GACCCTTCTCCCCTCACCC 60.996 68.421 0.00 0.00 0.00 4.61
694 703 2.359967 CCGACCCTTCTCCCCTCAC 61.360 68.421 0.00 0.00 0.00 3.51
695 704 2.038975 CCGACCCTTCTCCCCTCA 59.961 66.667 0.00 0.00 0.00 3.86
696 705 2.039137 ACCGACCCTTCTCCCCTC 59.961 66.667 0.00 0.00 0.00 4.30
697 706 2.039137 GACCGACCCTTCTCCCCT 59.961 66.667 0.00 0.00 0.00 4.79
698 707 3.082055 GGACCGACCCTTCTCCCC 61.082 72.222 0.00 0.00 0.00 4.81
707 716 0.994263 CACGAATTAACGGACCGACC 59.006 55.000 23.38 1.63 37.61 4.79
710 719 2.159393 TCCTACACGAATTAACGGACCG 60.159 50.000 13.61 13.61 37.61 4.79
738 747 3.444742 TCCGAAAATGCTAGACTTACGGA 59.555 43.478 0.00 0.00 43.35 4.69
739 748 3.777478 TCCGAAAATGCTAGACTTACGG 58.223 45.455 0.00 0.00 39.30 4.02
740 749 4.499758 GTCTCCGAAAATGCTAGACTTACG 59.500 45.833 0.00 0.00 34.95 3.18
754 763 9.985730 TTTTAGTAAATAGAGTTGTCTCCGAAA 57.014 29.630 0.00 0.00 41.26 3.46
775 784 6.156083 TGAAGGAGGGGCCATTTTTATTTTAG 59.844 38.462 4.39 0.00 40.02 1.85
782 791 2.414250 TTGAAGGAGGGGCCATTTTT 57.586 45.000 4.39 0.00 40.02 1.94
807 816 2.670148 GGAGAATCACGTGGGGCCT 61.670 63.158 17.00 7.98 36.25 5.19
808 817 2.124695 GGAGAATCACGTGGGGCC 60.125 66.667 17.00 6.88 36.25 5.80
809 818 2.511600 CGGAGAATCACGTGGGGC 60.512 66.667 17.00 5.03 36.25 5.80
826 850 1.724654 CGTGTTCACTTTGGCGTATGC 60.725 52.381 0.00 0.00 41.71 3.14
841 866 2.184167 CCTTGGCGTTCCACGTGTT 61.184 57.895 15.65 0.00 44.73 3.32
855 880 2.606725 CGATAGACTTGCTGCTTCCTTG 59.393 50.000 0.00 0.00 39.76 3.61
884 910 1.448540 CGCGTCCAATCCTCAGCTT 60.449 57.895 0.00 0.00 0.00 3.74
1189 1215 3.462678 GACTGAGAGGGACGGGGC 61.463 72.222 0.00 0.00 0.00 5.80
1232 1258 1.272490 GAGTCGTGAACTGGATGACCA 59.728 52.381 0.00 0.00 44.76 4.02
1233 1259 1.546476 AGAGTCGTGAACTGGATGACC 59.454 52.381 0.00 0.00 38.74 4.02
1234 1260 3.305398 AAGAGTCGTGAACTGGATGAC 57.695 47.619 0.00 0.00 38.74 3.06
1235 1261 3.653344 CAAAGAGTCGTGAACTGGATGA 58.347 45.455 0.00 0.00 38.74 2.92
1239 1265 1.528586 CAGCAAAGAGTCGTGAACTGG 59.471 52.381 1.43 0.00 38.74 4.00
1440 1466 1.089920 GGTAGCACCAGCACAATCAG 58.910 55.000 1.01 0.00 45.49 2.90
1500 1526 2.270257 GCAGTTGCTCATGGGCACA 61.270 57.895 22.72 9.15 42.27 4.57
1644 1670 4.255301 TGAATTGAATTGCAGGATTTGGC 58.745 39.130 0.00 0.00 0.00 4.52
1648 1674 7.848128 AGATTTCTGAATTGAATTGCAGGATT 58.152 30.769 13.48 5.66 0.00 3.01
1649 1675 7.419711 AGATTTCTGAATTGAATTGCAGGAT 57.580 32.000 13.48 9.85 0.00 3.24
1680 1706 7.396907 CCATCCATGATACATTTTATGCCCTAA 59.603 37.037 0.00 0.00 0.00 2.69
1685 1727 6.028146 TGCCATCCATGATACATTTTATGC 57.972 37.500 0.00 0.00 0.00 3.14
1686 1728 7.457024 TCTGCCATCCATGATACATTTTATG 57.543 36.000 0.00 0.00 0.00 1.90
1687 1729 7.891712 TGATCTGCCATCCATGATACATTTTAT 59.108 33.333 0.00 0.00 0.00 1.40
1688 1730 7.175467 GTGATCTGCCATCCATGATACATTTTA 59.825 37.037 0.00 0.00 0.00 1.52
1691 1733 5.008331 GTGATCTGCCATCCATGATACATT 58.992 41.667 0.00 0.00 0.00 2.71
1694 1736 2.998670 CGTGATCTGCCATCCATGATAC 59.001 50.000 0.00 0.00 0.00 2.24
1695 1737 2.613725 GCGTGATCTGCCATCCATGATA 60.614 50.000 0.00 0.00 0.00 2.15
1696 1738 1.881072 GCGTGATCTGCCATCCATGAT 60.881 52.381 0.00 0.00 0.00 2.45
1697 1739 0.533531 GCGTGATCTGCCATCCATGA 60.534 55.000 0.00 0.00 0.00 3.07
1698 1740 0.816421 TGCGTGATCTGCCATCCATG 60.816 55.000 7.84 0.00 0.00 3.66
1699 1741 0.816825 GTGCGTGATCTGCCATCCAT 60.817 55.000 7.84 0.00 0.00 3.41
1700 1742 1.450134 GTGCGTGATCTGCCATCCA 60.450 57.895 7.84 0.00 0.00 3.41
1701 1743 0.104855 TAGTGCGTGATCTGCCATCC 59.895 55.000 7.84 0.00 0.00 3.51
1702 1744 1.212616 GTAGTGCGTGATCTGCCATC 58.787 55.000 7.84 0.57 0.00 3.51
1703 1745 0.528466 CGTAGTGCGTGATCTGCCAT 60.528 55.000 7.84 0.46 35.54 4.40
1704 1746 1.153842 CGTAGTGCGTGATCTGCCA 60.154 57.895 7.84 0.00 35.54 4.92
1705 1747 3.693245 CGTAGTGCGTGATCTGCC 58.307 61.111 7.84 0.98 35.54 4.85
1712 1754 5.945031 GAAGATTCCTTGACGTAGTGCGTG 61.945 50.000 12.08 0.00 42.84 5.34
1713 1755 3.917743 GAAGATTCCTTGACGTAGTGCGT 60.918 47.826 5.78 5.78 44.37 5.24
1714 1756 2.599082 GAAGATTCCTTGACGTAGTGCG 59.401 50.000 0.00 0.00 38.58 5.34
1720 1762 0.974383 ACCCGAAGATTCCTTGACGT 59.026 50.000 0.00 0.00 31.62 4.34
1722 1764 3.003480 CAAGACCCGAAGATTCCTTGAC 58.997 50.000 0.00 0.00 31.62 3.18
1818 1863 0.761802 ATCTTTCCCTCCGATCCAGC 59.238 55.000 0.00 0.00 0.00 4.85
1837 1882 1.071814 GCGGTACCCTGAAACCACA 59.928 57.895 6.25 0.00 35.35 4.17
1978 2023 7.040686 ACACACCATGAACATTTTTCTACCTAC 60.041 37.037 0.00 0.00 0.00 3.18
2116 2165 0.178068 AGTAGCGGAACCGAATGCAT 59.822 50.000 17.63 0.00 42.83 3.96
2284 2333 8.835439 ACAAACAAGTGTGAAAAACAATCTTTT 58.165 25.926 0.00 0.00 41.57 2.27
2318 2367 4.592485 TCGCCACAACAATTTAACCAAT 57.408 36.364 0.00 0.00 0.00 3.16
2319 2368 4.592485 ATCGCCACAACAATTTAACCAA 57.408 36.364 0.00 0.00 0.00 3.67
2367 2418 3.204827 GATGCTGATGCCCGCGTT 61.205 61.111 4.92 0.00 38.71 4.84
2536 2592 6.389091 TCAAATATTTGCCTTAACACAGCAG 58.611 36.000 21.15 0.00 37.89 4.24
2595 2651 4.196193 TCCACAAGACACAAACTAACAGG 58.804 43.478 0.00 0.00 0.00 4.00
2685 2741 7.965107 CACTAAATGAAATAACTCTTCCTGTGC 59.035 37.037 0.00 0.00 0.00 4.57
2823 2879 5.710567 TCAGTGCTGTACTAACTGATACACT 59.289 40.000 16.75 0.00 44.01 3.55
2841 2897 3.581024 TTTGAATGGCATTCTCAGTGC 57.419 42.857 33.21 12.69 39.96 4.40
2878 2934 5.070770 TGCCAAAAACATATGTCCATGAC 57.929 39.130 9.23 1.85 0.00 3.06
2889 2945 3.197265 GTCAACTTGCTGCCAAAAACAT 58.803 40.909 0.00 0.00 0.00 2.71
3137 3195 6.792326 ACAGCTTGTTTTTAGTACTTTCCAC 58.208 36.000 0.00 0.00 0.00 4.02
3224 3283 8.642020 GTGATCAAGTTGTTCTATGAAAAATGC 58.358 33.333 13.67 0.00 0.00 3.56
3302 3390 5.076182 TCAGACCCAAAATCATTTGCAGTA 58.924 37.500 0.00 0.00 43.73 2.74
3565 3778 9.747898 AACATCATATGGAAGTTAAGGTTTACA 57.252 29.630 2.13 0.00 35.78 2.41
3596 3809 3.245797 CATCATATGGAAGTCGGCGTAG 58.754 50.000 6.85 0.00 0.00 3.51
3611 3824 6.954487 ATATTAGATACCGGCGACATCATA 57.046 37.500 9.30 5.93 0.00 2.15
3926 4139 3.407698 TCTACTGCCTCATTCGCAAAAA 58.592 40.909 0.00 0.00 35.40 1.94
3927 4140 3.052455 TCTACTGCCTCATTCGCAAAA 57.948 42.857 0.00 0.00 35.40 2.44
3928 4141 2.760634 TCTACTGCCTCATTCGCAAA 57.239 45.000 0.00 0.00 35.40 3.68
3929 4142 2.988010 ATCTACTGCCTCATTCGCAA 57.012 45.000 0.00 0.00 35.40 4.85
3930 4143 5.921962 ATATATCTACTGCCTCATTCGCA 57.078 39.130 0.00 0.00 34.41 5.10
3931 4144 6.693545 GTGTATATATCTACTGCCTCATTCGC 59.306 42.308 0.00 0.00 0.00 4.70
3932 4145 7.912773 CAGTGTATATATCTACTGCCTCATTCG 59.087 40.741 13.30 0.00 34.78 3.34
3933 4146 8.961634 TCAGTGTATATATCTACTGCCTCATTC 58.038 37.037 17.95 0.00 40.15 2.67
3934 4147 8.744652 GTCAGTGTATATATCTACTGCCTCATT 58.255 37.037 17.95 0.00 40.15 2.57
3935 4148 8.112822 AGTCAGTGTATATATCTACTGCCTCAT 58.887 37.037 17.95 5.66 40.15 2.90
3936 4149 7.391833 CAGTCAGTGTATATATCTACTGCCTCA 59.608 40.741 17.95 5.11 40.15 3.86
3937 4150 7.608376 TCAGTCAGTGTATATATCTACTGCCTC 59.392 40.741 17.95 12.86 40.15 4.70
3938 4151 7.392113 GTCAGTCAGTGTATATATCTACTGCCT 59.608 40.741 17.95 12.69 40.15 4.75
3939 4152 7.175119 TGTCAGTCAGTGTATATATCTACTGCC 59.825 40.741 17.95 11.15 40.15 4.85
3940 4153 8.018520 GTGTCAGTCAGTGTATATATCTACTGC 58.981 40.741 17.95 14.42 40.15 4.40
3941 4154 9.278978 AGTGTCAGTCAGTGTATATATCTACTG 57.721 37.037 17.17 17.17 41.34 2.74
3942 4155 9.854668 AAGTGTCAGTCAGTGTATATATCTACT 57.145 33.333 0.00 0.00 0.00 2.57
3949 4162 8.035394 CCTTGTAAAGTGTCAGTCAGTGTATAT 58.965 37.037 0.00 0.00 44.25 0.86
3950 4163 7.014905 ACCTTGTAAAGTGTCAGTCAGTGTATA 59.985 37.037 0.00 0.00 44.25 1.47
3951 4164 6.183360 ACCTTGTAAAGTGTCAGTCAGTGTAT 60.183 38.462 0.00 0.00 44.25 2.29
3952 4165 5.128171 ACCTTGTAAAGTGTCAGTCAGTGTA 59.872 40.000 0.00 0.00 44.25 2.90
3953 4166 4.081087 ACCTTGTAAAGTGTCAGTCAGTGT 60.081 41.667 0.00 0.00 44.25 3.55
3954 4167 4.271049 CACCTTGTAAAGTGTCAGTCAGTG 59.729 45.833 0.00 0.00 44.25 3.66
3955 4168 4.442706 CACCTTGTAAAGTGTCAGTCAGT 58.557 43.478 0.00 0.00 44.25 3.41
3956 4169 3.248602 GCACCTTGTAAAGTGTCAGTCAG 59.751 47.826 0.00 0.00 44.25 3.51
3957 4170 3.202906 GCACCTTGTAAAGTGTCAGTCA 58.797 45.455 0.00 0.00 44.25 3.41
3958 4171 3.202906 TGCACCTTGTAAAGTGTCAGTC 58.797 45.455 0.00 0.00 44.25 3.51
4066 4287 6.151648 TCAGATTCCCACTTTATTTCTTGCAG 59.848 38.462 0.00 0.00 0.00 4.41
4087 4308 4.951254 TCACATGTTACGAAAGGTTCAGA 58.049 39.130 0.00 0.00 0.00 3.27
4098 4319 6.462636 CACGAAAAAGATGATCACATGTTACG 59.537 38.462 0.00 2.89 38.71 3.18
4120 4341 3.763097 TGAAGGCTGCATATTTTCACG 57.237 42.857 0.50 0.00 0.00 4.35
4121 4342 5.473039 ACTTTGAAGGCTGCATATTTTCAC 58.527 37.500 0.00 0.00 0.00 3.18
4123 4344 6.158598 TGAACTTTGAAGGCTGCATATTTTC 58.841 36.000 0.00 0.00 0.00 2.29
4126 4347 4.381292 GCTGAACTTTGAAGGCTGCATATT 60.381 41.667 0.00 0.00 33.21 1.28
4127 4348 3.129988 GCTGAACTTTGAAGGCTGCATAT 59.870 43.478 0.00 0.00 33.21 1.78
4289 4511 5.003160 AGAATTTTGGGCTGTAAAAATGGC 58.997 37.500 0.00 0.00 36.40 4.40
4349 4571 2.444010 TGGTAACTAAGGGTGCAAAGGT 59.556 45.455 0.00 0.00 37.61 3.50
4796 5151 8.408743 AGAGTAATACAACACGATTTCTAAGC 57.591 34.615 0.00 0.00 0.00 3.09
4803 5158 7.328737 GTCAGACAAGAGTAATACAACACGATT 59.671 37.037 0.00 0.00 0.00 3.34
4808 5163 8.773645 CATTTGTCAGACAAGAGTAATACAACA 58.226 33.333 15.61 0.00 39.53 3.33
4846 5201 1.093159 GATGCAGTTTCTGGGCAGAG 58.907 55.000 0.00 0.00 41.40 3.35
4871 5226 4.480115 TCTTCCCTATCCTCGCATTCTTA 58.520 43.478 0.00 0.00 0.00 2.10
4910 5265 0.469494 ACATCATGCATACCTCGGCA 59.531 50.000 0.00 0.00 45.23 5.69
4975 5330 6.968400 TTGGGGGATCATAGCTTATTGATA 57.032 37.500 0.00 0.00 0.00 2.15
4981 5336 4.728772 CAACATTGGGGGATCATAGCTTA 58.271 43.478 0.00 0.00 0.00 3.09
5049 5404 8.514594 TGGTTCACTAGAAATGATCAAATGAAC 58.485 33.333 9.20 9.20 40.64 3.18
5051 5406 7.121168 GGTGGTTCACTAGAAATGATCAAATGA 59.879 37.037 0.00 0.00 35.08 2.57
5052 5407 7.253422 GGTGGTTCACTAGAAATGATCAAATG 58.747 38.462 0.00 0.00 35.08 2.32
5053 5408 6.378280 GGGTGGTTCACTAGAAATGATCAAAT 59.622 38.462 0.00 0.00 35.08 2.32
5054 5409 5.710099 GGGTGGTTCACTAGAAATGATCAAA 59.290 40.000 0.00 0.00 35.08 2.69
5055 5410 5.014123 AGGGTGGTTCACTAGAAATGATCAA 59.986 40.000 0.00 0.00 35.08 2.57
5056 5411 4.536090 AGGGTGGTTCACTAGAAATGATCA 59.464 41.667 0.00 0.00 35.08 2.92
5057 5412 5.104259 AGGGTGGTTCACTAGAAATGATC 57.896 43.478 0.00 0.00 35.08 2.92
5058 5413 4.080299 GGAGGGTGGTTCACTAGAAATGAT 60.080 45.833 0.00 0.00 35.08 2.45
5080 5435 2.048503 GGACGACACCAACTCCGG 60.049 66.667 0.00 0.00 0.00 5.14
5103 5459 3.565482 ACAGCAAACCACATGTTCAGTAG 59.435 43.478 0.00 0.00 35.67 2.57
5214 5570 6.760440 ATGACTAATCCATCCTCAATCACT 57.240 37.500 0.00 0.00 0.00 3.41
5222 5578 6.021672 TCAGCTCATATGACTAATCCATCCT 58.978 40.000 0.00 0.00 0.00 3.24
5251 5607 2.560542 TCTTGCTGAACTGGAGAGACTC 59.439 50.000 0.00 0.00 0.00 3.36
5252 5608 2.562298 CTCTTGCTGAACTGGAGAGACT 59.438 50.000 0.00 0.00 36.77 3.24
5254 5610 2.881734 TCTCTTGCTGAACTGGAGAGA 58.118 47.619 0.00 0.00 40.21 3.10
5255 5611 3.674528 TTCTCTTGCTGAACTGGAGAG 57.325 47.619 0.00 0.00 35.03 3.20
5264 5622 7.672983 ACGAATTCTTTATTTCTCTTGCTGA 57.327 32.000 3.52 0.00 0.00 4.26
5294 5652 2.614057 CCCACGCATCTTATTGGAAGAC 59.386 50.000 0.00 0.00 0.00 3.01
5315 5673 2.893489 ACAAGGAGCATTTTCAGGGTTC 59.107 45.455 0.00 0.00 0.00 3.62
5376 5734 7.655328 TGAATTTTTAAAGCAATTCGGTGACAT 59.345 29.630 15.57 0.00 40.77 3.06
5404 5762 6.398918 ACCTCAGTCATGTTGATAACACTAC 58.601 40.000 0.00 0.00 45.50 2.73
5408 5766 8.684386 TTAAAACCTCAGTCATGTTGATAACA 57.316 30.769 0.00 0.00 46.94 2.41
5558 5941 6.478512 AAAATTCCAAGCTAGGTTCAAACA 57.521 33.333 3.68 0.00 0.00 2.83
5772 6188 4.105486 GCACAACTCTTTTCAAGTGAACC 58.895 43.478 0.00 0.00 33.13 3.62
5851 6267 4.465512 GAATGGCGTGGCAGTGCG 62.466 66.667 9.45 0.00 0.00 5.34
5869 6285 2.034532 CCAGCATCACAGGTGCCA 59.965 61.111 0.00 0.00 43.50 4.92
5872 6288 2.034532 TGCCCAGCATCACAGGTG 59.965 61.111 0.00 0.00 31.71 4.00
5955 6372 0.391927 CCTCCGGCCGTGATTTTACA 60.392 55.000 26.12 0.00 0.00 2.41
5980 6397 1.804326 GTGACCGTCGATTCCACCG 60.804 63.158 0.00 0.00 0.00 4.94
6167 6591 2.034879 CCGCGTGCTCATTCCAACT 61.035 57.895 4.92 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.