Multiple sequence alignment - TraesCS5A01G471800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G471800 chr5A 100.000 4467 0 0 1 4467 648771955 648767489 0.000000e+00 8250.0
1 TraesCS5A01G471800 chr5A 93.777 691 26 4 3706 4380 648757518 648756829 0.000000e+00 1022.0
2 TraesCS5A01G471800 chr5A 96.238 505 19 0 3701 4205 303714064 303713560 0.000000e+00 828.0
3 TraesCS5A01G471800 chr5A 95.164 517 22 2 3690 4205 301562834 301562320 0.000000e+00 813.0
4 TraesCS5A01G471800 chr5A 96.629 267 7 2 4199 4464 678439809 678440074 4.100000e-120 442.0
5 TraesCS5A01G471800 chr5B 88.397 3749 332 56 1 3707 655902154 655898467 0.000000e+00 4418.0
6 TraesCS5A01G471800 chr5B 82.393 2215 297 46 890 3055 640491862 640489692 0.000000e+00 1844.0
7 TraesCS5A01G471800 chr5B 81.034 580 78 15 3106 3661 640489257 640488686 2.470000e-117 433.0
8 TraesCS5A01G471800 chr5B 77.603 317 65 5 1015 1328 655803523 655803210 2.120000e-43 187.0
9 TraesCS5A01G471800 chr5B 78.472 144 29 2 990 1132 655705470 655705328 4.760000e-15 93.5
10 TraesCS5A01G471800 chr5D 91.442 3038 206 24 708 3707 520580833 520577812 0.000000e+00 4120.0
11 TraesCS5A01G471800 chr5D 84.068 1180 140 23 946 2084 509651674 509650502 0.000000e+00 1094.0
12 TraesCS5A01G471800 chr5D 85.787 978 126 12 2140 3108 509650476 509649503 0.000000e+00 1024.0
13 TraesCS5A01G471800 chr5D 81.646 632 76 24 3106 3707 509648966 509648345 5.190000e-134 488.0
14 TraesCS5A01G471800 chr5D 79.320 706 83 26 4 687 520585336 520584672 1.910000e-118 436.0
15 TraesCS5A01G471800 chr5D 96.578 263 8 1 4205 4467 447152060 447151799 6.860000e-118 435.0
16 TraesCS5A01G471800 chr3A 92.675 628 35 4 3706 4333 713257129 713256513 0.000000e+00 894.0
17 TraesCS5A01G471800 chr1D 83.215 983 137 19 2134 3104 440581953 440582919 0.000000e+00 876.0
18 TraesCS5A01G471800 chr1D 82.472 987 148 19 2134 3108 440576278 440577251 0.000000e+00 841.0
19 TraesCS5A01G471800 chr1D 82.714 700 101 13 2395 3086 440647484 440648171 4.940000e-169 604.0
20 TraesCS5A01G471800 chr1D 96.591 264 8 1 4204 4467 367945728 367945990 1.910000e-118 436.0
21 TraesCS5A01G471800 chr1D 78.940 679 88 27 1461 2096 440581280 440581946 1.160000e-110 411.0
22 TraesCS5A01G471800 chr1D 77.160 162 27 9 2406 2562 441001621 441001465 7.960000e-13 86.1
23 TraesCS5A01G471800 chr7A 96.275 510 18 1 3696 4205 77372504 77371996 0.000000e+00 835.0
24 TraesCS5A01G471800 chr7A 96.607 501 17 0 3705 4205 659726240 659726740 0.000000e+00 832.0
25 TraesCS5A01G471800 chr7A 94.497 527 27 2 3679 4205 538185709 538186233 0.000000e+00 811.0
26 TraesCS5A01G471800 chr7A 79.305 691 92 39 1 652 392924284 392923606 1.910000e-118 436.0
27 TraesCS5A01G471800 chr7A 88.710 310 29 2 708 1017 28209390 28209087 1.520000e-99 374.0
28 TraesCS5A01G471800 chr6A 96.607 501 17 0 3705 4205 445132803 445132303 0.000000e+00 832.0
29 TraesCS5A01G471800 chr6A 96.947 262 5 3 4205 4465 574995491 574995232 1.910000e-118 436.0
30 TraesCS5A01G471800 chr2A 95.340 515 23 1 3691 4205 537196503 537197016 0.000000e+00 817.0
31 TraesCS5A01G471800 chr1A 81.883 988 149 22 2134 3108 537367241 537366271 0.000000e+00 806.0
32 TraesCS5A01G471800 chr1A 80.236 678 78 27 1467 2099 537441469 537440803 4.070000e-125 459.0
33 TraesCS5A01G471800 chr1A 79.595 691 89 27 1467 2114 537367910 537367229 8.810000e-122 448.0
34 TraesCS5A01G471800 chr1B 81.212 990 158 22 2131 3108 597983476 597984449 0.000000e+00 773.0
35 TraesCS5A01G471800 chr1B 80.182 989 168 21 2134 3108 597954151 597955125 0.000000e+00 715.0
36 TraesCS5A01G471800 chr1B 76.946 668 96 38 1467 2093 597961061 597961711 1.200000e-85 327.0
37 TraesCS5A01G471800 chr1B 76.442 624 98 31 1464 2047 597953489 597954103 4.370000e-75 292.0
38 TraesCS5A01G471800 chr7D 97.015 268 5 2 4200 4467 125376411 125376675 8.810000e-122 448.0
39 TraesCS5A01G471800 chr7D 96.667 270 6 3 4199 4467 355020155 355020422 3.170000e-121 446.0
40 TraesCS5A01G471800 chr7D 78.499 693 102 28 1 656 364370053 364370735 1.160000e-110 411.0
41 TraesCS5A01G471800 chr4D 97.692 260 5 1 4205 4464 508492472 508492214 3.170000e-121 446.0
42 TraesCS5A01G471800 chr2D 96.981 265 7 1 4203 4467 329205069 329205332 1.140000e-120 444.0
43 TraesCS5A01G471800 chr6D 96.591 264 6 3 4205 4467 367871646 367871907 6.860000e-118 435.0
44 TraesCS5A01G471800 chr7B 78.645 679 94 33 1 646 323834958 323835618 1.940000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G471800 chr5A 648767489 648771955 4466 True 8250.000000 8250 100.000000 1 4467 1 chr5A.!!$R4 4466
1 TraesCS5A01G471800 chr5A 648756829 648757518 689 True 1022.000000 1022 93.777000 3706 4380 1 chr5A.!!$R3 674
2 TraesCS5A01G471800 chr5A 303713560 303714064 504 True 828.000000 828 96.238000 3701 4205 1 chr5A.!!$R2 504
3 TraesCS5A01G471800 chr5A 301562320 301562834 514 True 813.000000 813 95.164000 3690 4205 1 chr5A.!!$R1 515
4 TraesCS5A01G471800 chr5B 655898467 655902154 3687 True 4418.000000 4418 88.397000 1 3707 1 chr5B.!!$R3 3706
5 TraesCS5A01G471800 chr5B 640488686 640491862 3176 True 1138.500000 1844 81.713500 890 3661 2 chr5B.!!$R4 2771
6 TraesCS5A01G471800 chr5D 520577812 520585336 7524 True 2278.000000 4120 85.381000 4 3707 2 chr5D.!!$R3 3703
7 TraesCS5A01G471800 chr5D 509648345 509651674 3329 True 868.666667 1094 83.833667 946 3707 3 chr5D.!!$R2 2761
8 TraesCS5A01G471800 chr3A 713256513 713257129 616 True 894.000000 894 92.675000 3706 4333 1 chr3A.!!$R1 627
9 TraesCS5A01G471800 chr1D 440576278 440577251 973 False 841.000000 841 82.472000 2134 3108 1 chr1D.!!$F2 974
10 TraesCS5A01G471800 chr1D 440581280 440582919 1639 False 643.500000 876 81.077500 1461 3104 2 chr1D.!!$F4 1643
11 TraesCS5A01G471800 chr1D 440647484 440648171 687 False 604.000000 604 82.714000 2395 3086 1 chr1D.!!$F3 691
12 TraesCS5A01G471800 chr7A 77371996 77372504 508 True 835.000000 835 96.275000 3696 4205 1 chr7A.!!$R2 509
13 TraesCS5A01G471800 chr7A 659726240 659726740 500 False 832.000000 832 96.607000 3705 4205 1 chr7A.!!$F2 500
14 TraesCS5A01G471800 chr7A 538185709 538186233 524 False 811.000000 811 94.497000 3679 4205 1 chr7A.!!$F1 526
15 TraesCS5A01G471800 chr7A 392923606 392924284 678 True 436.000000 436 79.305000 1 652 1 chr7A.!!$R3 651
16 TraesCS5A01G471800 chr6A 445132303 445132803 500 True 832.000000 832 96.607000 3705 4205 1 chr6A.!!$R1 500
17 TraesCS5A01G471800 chr2A 537196503 537197016 513 False 817.000000 817 95.340000 3691 4205 1 chr2A.!!$F1 514
18 TraesCS5A01G471800 chr1A 537366271 537367910 1639 True 627.000000 806 80.739000 1467 3108 2 chr1A.!!$R2 1641
19 TraesCS5A01G471800 chr1A 537440803 537441469 666 True 459.000000 459 80.236000 1467 2099 1 chr1A.!!$R1 632
20 TraesCS5A01G471800 chr1B 597983476 597984449 973 False 773.000000 773 81.212000 2131 3108 1 chr1B.!!$F2 977
21 TraesCS5A01G471800 chr1B 597953489 597955125 1636 False 503.500000 715 78.312000 1464 3108 2 chr1B.!!$F3 1644
22 TraesCS5A01G471800 chr1B 597961061 597961711 650 False 327.000000 327 76.946000 1467 2093 1 chr1B.!!$F1 626
23 TraesCS5A01G471800 chr7D 364370053 364370735 682 False 411.000000 411 78.499000 1 656 1 chr7D.!!$F3 655
24 TraesCS5A01G471800 chr7B 323834958 323835618 660 False 403.000000 403 78.645000 1 646 1 chr7B.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 4665 1.058404 GTCGTTCTTCGTTAAGCGCT 58.942 50.000 2.64 2.64 41.07 5.92 F
1199 5146 1.002502 AGGCCGTGTTCCTAAAGGC 60.003 57.895 0.00 0.00 46.51 4.35 F
2467 6482 1.229336 ACAGCTAGGCACCTCACCT 60.229 57.895 0.00 0.00 41.57 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 6465 0.107945 GAAGGTGAGGTGCCTAGCTG 60.108 60.000 0.0 0.0 34.81 4.24 R
2878 6910 1.971357 CACCTATCTTGGGCTCCGTAT 59.029 52.381 0.0 0.0 0.00 3.06 R
4407 9037 0.604578 GGTTAGACGGTGTGCCACTA 59.395 55.000 0.0 0.0 34.40 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 61 9.940166 TTCCTTAAATTCTTGTACTTTTCGAAC 57.060 29.630 0.00 0.00 0.00 3.95
166 182 6.646240 CGTGAACTTTTTCCAAATGGATGATT 59.354 34.615 2.38 0.00 44.98 2.57
202 218 7.728847 TCGATCAACTCTTCTCAATTTTGAA 57.271 32.000 0.00 0.00 36.64 2.69
209 243 9.609950 CAACTCTTCTCAATTTTGAAGATCTTC 57.390 33.333 25.68 25.68 44.90 2.87
228 266 9.871238 AGATCTTCTTTCAAAATTGATGGAATG 57.129 29.630 0.00 0.00 37.00 2.67
436 547 6.363167 TCTGAATTTTCCAAATCCATGCTT 57.637 33.333 0.00 0.00 0.00 3.91
444 555 8.511604 TTTTCCAAATCCATGCTTTGTTTTAA 57.488 26.923 14.29 4.80 32.83 1.52
449 560 8.022550 CCAAATCCATGCTTTGTTTTAAAATCC 58.977 33.333 3.52 0.00 32.83 3.01
579 698 6.350103 TCGAGTGAGTGATCTATTGTAGAGT 58.650 40.000 0.00 0.00 38.38 3.24
646 773 2.667199 GCGCCGGTACAACAACCT 60.667 61.111 1.90 0.00 37.39 3.50
680 807 1.602605 GGTTCCGAAACAGGTGGGG 60.603 63.158 0.00 0.00 37.10 4.96
689 1822 2.838637 AACAGGTGGGGAAAAGAACA 57.161 45.000 0.00 0.00 0.00 3.18
700 1833 4.142160 GGGGAAAAGAACATTGTATCAGCC 60.142 45.833 0.00 0.00 0.00 4.85
702 1835 4.156008 GGAAAAGAACATTGTATCAGCCGT 59.844 41.667 0.00 0.00 0.00 5.68
711 4656 1.189403 GTATCAGCCGTCGTTCTTCG 58.811 55.000 0.00 0.00 41.41 3.79
720 4665 1.058404 GTCGTTCTTCGTTAAGCGCT 58.942 50.000 2.64 2.64 41.07 5.92
766 4711 2.252012 ATCCCGAGGTTAGGCCCAGA 62.252 60.000 0.00 0.00 38.26 3.86
802 4749 5.351189 CACCCTTGGTTTTCTCAACAAAAAG 59.649 40.000 0.00 0.00 31.02 2.27
806 4753 7.174080 CCCTTGGTTTTCTCAACAAAAAGAAAA 59.826 33.333 6.26 6.26 44.83 2.29
807 4754 8.229811 CCTTGGTTTTCTCAACAAAAAGAAAAG 58.770 33.333 9.78 0.64 46.54 2.27
812 4759 5.913137 TCTCAACAAAAAGAAAAGGCAGA 57.087 34.783 0.00 0.00 0.00 4.26
843 4790 7.799081 TGATAGTCTTCCTCATCAATCAACAT 58.201 34.615 0.00 0.00 0.00 2.71
854 4801 3.911868 TCAATCAACATCCAAAAAGGCG 58.088 40.909 0.00 0.00 37.29 5.52
872 4819 2.240500 GGATGGCTCGCGTGATGTC 61.241 63.158 13.13 5.57 0.00 3.06
942 4889 3.981071 ATTGGTCTCTCAATTCACCGA 57.019 42.857 0.00 0.00 34.01 4.69
944 4891 3.981071 TGGTCTCTCAATTCACCGAAT 57.019 42.857 0.00 0.00 33.25 3.34
972 4919 5.127491 TGACAATTACCGGTTTCAGTTTCT 58.873 37.500 15.04 0.00 0.00 2.52
1199 5146 1.002502 AGGCCGTGTTCCTAAAGGC 60.003 57.895 0.00 0.00 46.51 4.35
1293 5240 3.535561 GAGGATGTTTGTCACCGATGAT 58.464 45.455 0.00 0.00 37.14 2.45
1389 5337 6.716898 ACTAATTAAAGCCGTGTCAGTAAC 57.283 37.500 0.00 0.00 0.00 2.50
1541 5494 4.642466 TGGTGGTACATGTACAAATGGA 57.358 40.909 31.52 11.66 44.52 3.41
1576 5529 9.315363 AGGTATAAAATGTTACAAATGGTCCAA 57.685 29.630 0.00 0.00 0.00 3.53
1621 5589 1.252904 GGCTTGGCCTTCTTGATGCA 61.253 55.000 3.32 0.00 46.69 3.96
1732 5723 5.291128 CAGCAATGAGGCATTCTTTGAAATC 59.709 40.000 15.66 3.44 41.22 2.17
1785 5778 9.176460 TGAGCATCACTACAATTTGATATTCAA 57.824 29.630 2.79 0.00 42.56 2.69
1837 5832 5.796424 AACTCTGGCTGAAATCACAATTT 57.204 34.783 0.00 0.00 37.80 1.82
1857 5852 9.905713 ACAATTTAAGAAGAGATGCATAAGGTA 57.094 29.630 0.00 0.00 0.00 3.08
1936 5933 6.873076 GCTTTCTTATCAGGATATCTCTGGTG 59.127 42.308 16.48 4.41 33.36 4.17
1966 5963 8.172352 ACATGTGTTGTAATAGTAGCCAAAAA 57.828 30.769 0.00 0.00 36.57 1.94
2104 6116 2.040278 AGAAGACTGCCAACTGCCATTA 59.960 45.455 0.00 0.00 40.16 1.90
2107 6119 3.434309 AGACTGCCAACTGCCATTATTT 58.566 40.909 0.00 0.00 40.16 1.40
2108 6120 4.599041 AGACTGCCAACTGCCATTATTTA 58.401 39.130 0.00 0.00 40.16 1.40
2109 6121 4.641989 AGACTGCCAACTGCCATTATTTAG 59.358 41.667 0.00 0.00 40.16 1.85
2110 6122 4.344104 ACTGCCAACTGCCATTATTTAGT 58.656 39.130 0.00 0.00 40.16 2.24
2112 6124 5.070770 TGCCAACTGCCATTATTTAGTTG 57.929 39.130 0.00 0.00 45.82 3.16
2113 6125 3.865164 GCCAACTGCCATTATTTAGTTGC 59.135 43.478 9.73 3.56 45.23 4.17
2114 6126 4.381932 GCCAACTGCCATTATTTAGTTGCT 60.382 41.667 9.73 0.00 45.23 3.91
2202 6215 6.455360 TGCTCTATTGGACAAAAATGGATC 57.545 37.500 0.00 0.00 0.00 3.36
2204 6217 5.595952 GCTCTATTGGACAAAAATGGATCCT 59.404 40.000 14.23 0.00 32.06 3.24
2312 6326 1.901833 ACAATTGTGGGAATCTTGCCC 59.098 47.619 11.07 0.00 46.22 5.36
2313 6327 2.181975 CAATTGTGGGAATCTTGCCCT 58.818 47.619 0.00 0.00 46.19 5.19
2324 6338 4.396478 GGAATCTTGCCCTAAAAGTCTCAC 59.604 45.833 0.00 0.00 0.00 3.51
2386 6400 7.363880 CCAGAAGCAGGTTTACAGACTATCTTA 60.364 40.741 0.00 0.00 0.00 2.10
2439 6454 4.080638 GTCTCTCCACCAGAAAGATCCAAT 60.081 45.833 0.00 0.00 0.00 3.16
2450 6465 3.567478 AAGATCCAATGCTAGTGGGAC 57.433 47.619 3.41 0.00 36.73 4.46
2467 6482 1.229336 ACAGCTAGGCACCTCACCT 60.229 57.895 0.00 0.00 41.57 4.00
2527 6544 7.805083 AGGTATATCATGCTGGTAGAAGAAT 57.195 36.000 0.00 0.00 0.00 2.40
2530 6547 9.289782 GGTATATCATGCTGGTAGAAGAATTTT 57.710 33.333 0.00 0.00 0.00 1.82
2623 6641 1.681264 GGGAAGGCATACATTTTCCCG 59.319 52.381 5.47 0.00 46.62 5.14
2756 6781 1.683319 GCAAAGATGGGGAGGGAAGAC 60.683 57.143 0.00 0.00 0.00 3.01
2793 6825 6.490721 AGATGTACCAACCTACTAGAGTATGC 59.509 42.308 0.00 0.00 0.00 3.14
2831 6863 9.653287 CAATACCAGATAGTCTTTTGTCAAGTA 57.347 33.333 0.00 0.00 0.00 2.24
2864 6896 5.579753 AGGCATCAGATCATCCACTTTAT 57.420 39.130 0.00 0.00 0.00 1.40
2878 6910 7.618117 TCATCCACTTTATGTCTAGTAGAACCA 59.382 37.037 0.17 0.00 0.00 3.67
2937 6974 9.796120 TCTTTTTAACAACCAAGAATGTTAGTG 57.204 29.630 0.00 0.00 41.52 2.74
2940 6977 8.514330 TTTAACAACCAAGAATGTTAGTGACT 57.486 30.769 0.00 0.00 41.52 3.41
2947 6985 7.106239 ACCAAGAATGTTAGTGACTCAATAGG 58.894 38.462 0.00 0.00 0.00 2.57
3230 7818 0.593128 CGGGGTCTTCAGCAAACAAG 59.407 55.000 0.00 0.00 0.00 3.16
3232 7820 2.031870 GGGGTCTTCAGCAAACAAGTT 58.968 47.619 0.00 0.00 0.00 2.66
3250 7838 7.801716 ACAAGTTGCTAGTGTCATAAAAGAA 57.198 32.000 1.81 0.00 0.00 2.52
3274 7862 2.047465 CTGCTGGAGCTGCGTTCT 60.047 61.111 0.00 0.00 42.66 3.01
3322 7910 2.808523 TGAGAGAACTGACTGCTGTG 57.191 50.000 0.00 0.00 0.00 3.66
3331 7919 0.755079 TGACTGCTGTGCTTGAGAGT 59.245 50.000 0.00 0.00 0.00 3.24
3339 7927 1.419762 TGTGCTTGAGAGTTGCCCTAA 59.580 47.619 0.00 0.00 0.00 2.69
3360 7948 0.821711 TTGGAGGTTCTTGGGTTGCG 60.822 55.000 0.00 0.00 0.00 4.85
3467 8055 7.116948 GGGATGATGAGTGTTGTATCGATTAAG 59.883 40.741 1.71 0.00 0.00 1.85
3514 8109 7.950512 TCTTGATTCTGAAGATGAGAGGATAC 58.049 38.462 0.00 0.00 0.00 2.24
3526 8138 7.385267 AGATGAGAGGATACATTATTCAGTGC 58.615 38.462 0.00 0.00 41.41 4.40
3608 8221 7.147550 TCGTGAATTTATTTGCGCATAATTG 57.852 32.000 12.75 4.49 0.00 2.32
3637 8251 1.153168 CTGGCATGTACTTCCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
3649 8263 0.107214 TTCCCCCGTTCAGATGCATC 60.107 55.000 19.37 19.37 0.00 3.91
3662 8276 7.011389 CGTTCAGATGCATCTTAATACCTTTGA 59.989 37.037 26.70 14.25 34.22 2.69
3663 8277 8.341173 GTTCAGATGCATCTTAATACCTTTGAG 58.659 37.037 26.70 10.61 34.22 3.02
3669 8283 8.079211 TGCATCTTAATACCTTTGAGTCTAGT 57.921 34.615 0.00 0.00 0.00 2.57
3763 8377 0.108186 CGAACTGTGCATCTAGGCCA 60.108 55.000 5.01 0.00 0.00 5.36
3790 8404 2.526873 AGAAGGCAGGGGACACGT 60.527 61.111 0.00 0.00 0.00 4.49
3894 8508 6.123651 ACAAGAGTAGATCTACCACGAGATT 58.876 40.000 25.93 7.86 37.23 2.40
4317 8931 0.107410 TTACTAATGGCGCACCCCTG 60.107 55.000 10.83 0.00 33.59 4.45
4333 8947 1.346395 CCCTGGTGCGCCATTAGTATA 59.654 52.381 21.54 0.00 45.05 1.47
4334 8948 2.612972 CCCTGGTGCGCCATTAGTATAG 60.613 54.545 21.54 5.11 45.05 1.31
4369 8999 0.386476 TTAGTATAGGCCACGGTGCG 59.614 55.000 5.01 0.00 0.00 5.34
4380 9010 1.365699 CACGGTGCGCCTTTAGTATT 58.634 50.000 15.69 0.00 0.00 1.89
4381 9011 1.735571 CACGGTGCGCCTTTAGTATTT 59.264 47.619 15.69 0.00 0.00 1.40
4382 9012 2.160813 CACGGTGCGCCTTTAGTATTTT 59.839 45.455 15.69 0.00 0.00 1.82
4383 9013 2.815503 ACGGTGCGCCTTTAGTATTTTT 59.184 40.909 15.69 0.00 0.00 1.94
4384 9014 3.168193 CGGTGCGCCTTTAGTATTTTTG 58.832 45.455 15.69 0.00 0.00 2.44
4385 9015 3.120130 CGGTGCGCCTTTAGTATTTTTGA 60.120 43.478 15.69 0.00 0.00 2.69
4386 9016 4.614078 CGGTGCGCCTTTAGTATTTTTGAA 60.614 41.667 15.69 0.00 0.00 2.69
4387 9017 5.407502 GGTGCGCCTTTAGTATTTTTGAAT 58.592 37.500 9.68 0.00 0.00 2.57
4388 9018 5.867174 GGTGCGCCTTTAGTATTTTTGAATT 59.133 36.000 9.68 0.00 0.00 2.17
4389 9019 6.367695 GGTGCGCCTTTAGTATTTTTGAATTT 59.632 34.615 9.68 0.00 0.00 1.82
4390 9020 7.095397 GGTGCGCCTTTAGTATTTTTGAATTTT 60.095 33.333 9.68 0.00 0.00 1.82
4391 9021 7.739911 GTGCGCCTTTAGTATTTTTGAATTTTG 59.260 33.333 4.18 0.00 0.00 2.44
4392 9022 7.653713 TGCGCCTTTAGTATTTTTGAATTTTGA 59.346 29.630 4.18 0.00 0.00 2.69
4393 9023 8.491950 GCGCCTTTAGTATTTTTGAATTTTGAA 58.508 29.630 0.00 0.00 0.00 2.69
4398 9028 8.527567 TTAGTATTTTTGAATTTTGAAGGCGG 57.472 30.769 0.00 0.00 0.00 6.13
4399 9029 5.931724 AGTATTTTTGAATTTTGAAGGCGGG 59.068 36.000 0.00 0.00 0.00 6.13
4400 9030 4.408182 TTTTTGAATTTTGAAGGCGGGA 57.592 36.364 0.00 0.00 0.00 5.14
4401 9031 4.408182 TTTTGAATTTTGAAGGCGGGAA 57.592 36.364 0.00 0.00 0.00 3.97
4402 9032 4.408182 TTTGAATTTTGAAGGCGGGAAA 57.592 36.364 0.00 0.00 0.00 3.13
4403 9033 4.408182 TTGAATTTTGAAGGCGGGAAAA 57.592 36.364 0.00 0.00 0.00 2.29
4404 9034 4.615588 TGAATTTTGAAGGCGGGAAAAT 57.384 36.364 0.00 0.00 32.01 1.82
4405 9035 5.730296 TGAATTTTGAAGGCGGGAAAATA 57.270 34.783 0.00 0.00 30.81 1.40
4406 9036 5.719173 TGAATTTTGAAGGCGGGAAAATAG 58.281 37.500 0.00 0.00 30.81 1.73
4407 9037 5.245075 TGAATTTTGAAGGCGGGAAAATAGT 59.755 36.000 0.00 0.00 30.81 2.12
4408 9038 6.434652 TGAATTTTGAAGGCGGGAAAATAGTA 59.565 34.615 0.00 0.00 30.81 1.82
4409 9039 5.890424 TTTTGAAGGCGGGAAAATAGTAG 57.110 39.130 0.00 0.00 0.00 2.57
4410 9040 4.563140 TTGAAGGCGGGAAAATAGTAGT 57.437 40.909 0.00 0.00 0.00 2.73
4411 9041 3.869065 TGAAGGCGGGAAAATAGTAGTG 58.131 45.455 0.00 0.00 0.00 2.74
4412 9042 3.203716 GAAGGCGGGAAAATAGTAGTGG 58.796 50.000 0.00 0.00 0.00 4.00
4413 9043 1.134189 AGGCGGGAAAATAGTAGTGGC 60.134 52.381 0.00 0.00 0.00 5.01
4414 9044 1.407712 GGCGGGAAAATAGTAGTGGCA 60.408 52.381 0.00 0.00 0.00 4.92
4415 9045 1.669265 GCGGGAAAATAGTAGTGGCAC 59.331 52.381 10.29 10.29 0.00 5.01
4416 9046 2.937873 GCGGGAAAATAGTAGTGGCACA 60.938 50.000 21.41 2.83 0.00 4.57
4427 9057 2.745037 TGGCACACCGTCTAACCC 59.255 61.111 0.00 0.00 39.70 4.11
4428 9058 2.046604 GGCACACCGTCTAACCCC 60.047 66.667 0.00 0.00 0.00 4.95
4429 9059 2.046604 GCACACCGTCTAACCCCC 60.047 66.667 0.00 0.00 0.00 5.40
4430 9060 2.886134 GCACACCGTCTAACCCCCA 61.886 63.158 0.00 0.00 0.00 4.96
4431 9061 1.004200 CACACCGTCTAACCCCCAC 60.004 63.158 0.00 0.00 0.00 4.61
4432 9062 2.219164 ACACCGTCTAACCCCCACC 61.219 63.158 0.00 0.00 0.00 4.61
4433 9063 2.999063 ACCGTCTAACCCCCACCG 60.999 66.667 0.00 0.00 0.00 4.94
4434 9064 2.999063 CCGTCTAACCCCCACCGT 60.999 66.667 0.00 0.00 0.00 4.83
4435 9065 2.263540 CGTCTAACCCCCACCGTG 59.736 66.667 0.00 0.00 0.00 4.94
4436 9066 2.046604 GTCTAACCCCCACCGTGC 60.047 66.667 0.00 0.00 0.00 5.34
4437 9067 3.697747 TCTAACCCCCACCGTGCG 61.698 66.667 0.00 0.00 0.00 5.34
4446 9076 3.124270 CACCGTGCGCCATTGCTA 61.124 61.111 4.18 0.00 35.36 3.49
4447 9077 2.124736 ACCGTGCGCCATTGCTAT 60.125 55.556 4.18 0.00 35.36 2.97
4448 9078 1.748879 ACCGTGCGCCATTGCTATT 60.749 52.632 4.18 0.00 35.36 1.73
4449 9079 1.312371 ACCGTGCGCCATTGCTATTT 61.312 50.000 4.18 0.00 35.36 1.40
4450 9080 0.179140 CCGTGCGCCATTGCTATTTT 60.179 50.000 4.18 0.00 35.36 1.82
4451 9081 1.627879 CGTGCGCCATTGCTATTTTT 58.372 45.000 4.18 0.00 35.36 1.94
4452 9082 1.321148 CGTGCGCCATTGCTATTTTTG 59.679 47.619 4.18 0.00 35.36 2.44
4453 9083 2.605030 GTGCGCCATTGCTATTTTTGA 58.395 42.857 4.18 0.00 35.36 2.69
4454 9084 2.992543 GTGCGCCATTGCTATTTTTGAA 59.007 40.909 4.18 0.00 35.36 2.69
4455 9085 3.618150 GTGCGCCATTGCTATTTTTGAAT 59.382 39.130 4.18 0.00 35.36 2.57
4456 9086 4.093261 GTGCGCCATTGCTATTTTTGAATT 59.907 37.500 4.18 0.00 35.36 2.17
4457 9087 4.694509 TGCGCCATTGCTATTTTTGAATTT 59.305 33.333 4.18 0.00 35.36 1.82
4458 9088 5.180868 TGCGCCATTGCTATTTTTGAATTTT 59.819 32.000 4.18 0.00 35.36 1.82
4459 9089 5.508922 GCGCCATTGCTATTTTTGAATTTTG 59.491 36.000 0.00 0.00 34.43 2.44
4460 9090 6.620303 GCGCCATTGCTATTTTTGAATTTTGA 60.620 34.615 0.00 0.00 34.43 2.69
4461 9091 7.296660 CGCCATTGCTATTTTTGAATTTTGAA 58.703 30.769 0.00 0.00 34.43 2.69
4462 9092 7.964011 CGCCATTGCTATTTTTGAATTTTGAAT 59.036 29.630 0.00 0.00 34.43 2.57
4463 9093 9.628746 GCCATTGCTATTTTTGAATTTTGAATT 57.371 25.926 0.00 0.00 33.53 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 61 6.530913 TGAGATTCAAAAGAAGTTCGTGAG 57.469 37.500 0.00 0.00 0.00 3.51
202 218 9.871238 CATTCCATCAATTTTGAAAGAAGATCT 57.129 29.630 11.57 0.00 41.13 2.75
378 443 9.211485 AGTTATCAAATTTGGAAAAATGCTCAG 57.789 29.630 17.90 0.00 0.00 3.35
429 540 5.694006 TCACGGATTTTAAAACAAAGCATGG 59.306 36.000 1.97 0.00 0.00 3.66
579 698 1.165270 TCGCATGAGAACTCGACTCA 58.835 50.000 6.67 6.67 46.17 3.41
646 773 2.631545 GGAACCTTCCTATTAGGCGCTA 59.368 50.000 7.64 0.00 44.11 4.26
668 795 3.028130 TGTTCTTTTCCCCACCTGTTTC 58.972 45.455 0.00 0.00 0.00 2.78
680 807 5.296813 ACGGCTGATACAATGTTCTTTTC 57.703 39.130 0.00 0.00 0.00 2.29
689 1822 2.961526 AGAACGACGGCTGATACAAT 57.038 45.000 0.00 0.00 0.00 2.71
711 4656 4.260661 GCACCTTCCTATTTAGCGCTTAAC 60.261 45.833 18.68 0.00 0.00 2.01
747 4692 1.766461 CTGGGCCTAACCTCGGGAT 60.766 63.158 4.53 0.00 39.10 3.85
766 4711 2.207924 AAGGGTGGTCTCTCGCGTT 61.208 57.895 5.77 0.00 0.00 4.84
802 4749 4.336280 ACTATCAAAGGGTCTGCCTTTTC 58.664 43.478 0.00 0.00 41.40 2.29
806 4753 2.839228 AGACTATCAAAGGGTCTGCCT 58.161 47.619 0.00 0.00 38.65 4.75
807 4754 3.536570 GAAGACTATCAAAGGGTCTGCC 58.463 50.000 0.00 0.00 39.80 4.85
812 4759 5.032846 TGATGAGGAAGACTATCAAAGGGT 58.967 41.667 0.00 0.00 0.00 4.34
816 4763 8.102676 TGTTGATTGATGAGGAAGACTATCAAA 58.897 33.333 0.00 0.00 41.30 2.69
843 4790 0.965363 GAGCCATCCGCCTTTTTGGA 60.965 55.000 0.00 0.00 38.78 3.53
854 4801 2.202932 ACATCACGCGAGCCATCC 60.203 61.111 15.93 0.00 0.00 3.51
881 4828 4.321675 GGAACACAAGCCATCGGTATTTTT 60.322 41.667 0.00 0.00 0.00 1.94
882 4829 3.192633 GGAACACAAGCCATCGGTATTTT 59.807 43.478 0.00 0.00 0.00 1.82
883 4830 2.752903 GGAACACAAGCCATCGGTATTT 59.247 45.455 0.00 0.00 0.00 1.40
884 4831 2.365582 GGAACACAAGCCATCGGTATT 58.634 47.619 0.00 0.00 0.00 1.89
887 4834 1.303317 GGGAACACAAGCCATCGGT 60.303 57.895 0.00 0.00 0.00 4.69
888 4835 2.046285 GGGGAACACAAGCCATCGG 61.046 63.158 0.00 0.00 0.00 4.18
890 4837 1.282157 AGTAGGGGAACACAAGCCATC 59.718 52.381 0.00 0.00 0.00 3.51
891 4838 1.372501 AGTAGGGGAACACAAGCCAT 58.627 50.000 0.00 0.00 0.00 4.40
892 4839 1.073284 GAAGTAGGGGAACACAAGCCA 59.927 52.381 0.00 0.00 0.00 4.75
893 4840 1.822506 GAAGTAGGGGAACACAAGCC 58.177 55.000 0.00 0.00 0.00 4.35
894 4841 1.439679 CGAAGTAGGGGAACACAAGC 58.560 55.000 0.00 0.00 0.00 4.01
895 4842 1.439679 GCGAAGTAGGGGAACACAAG 58.560 55.000 0.00 0.00 0.00 3.16
896 4843 0.035739 GGCGAAGTAGGGGAACACAA 59.964 55.000 0.00 0.00 0.00 3.33
897 4844 0.834687 AGGCGAAGTAGGGGAACACA 60.835 55.000 0.00 0.00 0.00 3.72
898 4845 0.108281 GAGGCGAAGTAGGGGAACAC 60.108 60.000 0.00 0.00 0.00 3.32
899 4846 0.252103 AGAGGCGAAGTAGGGGAACA 60.252 55.000 0.00 0.00 0.00 3.18
942 4889 3.350219 ACCGGTAATTGTCAGAGCATT 57.650 42.857 4.49 0.00 0.00 3.56
944 4891 2.851263 AACCGGTAATTGTCAGAGCA 57.149 45.000 8.00 0.00 0.00 4.26
972 4919 0.755698 GATCTAGGAGTGGGGCGTCA 60.756 60.000 0.00 0.00 0.00 4.35
1087 5034 4.778143 GGCGCCCATGAGGACGTT 62.778 66.667 18.11 0.00 38.24 3.99
1293 5240 9.511272 CACCTTTCCATGATATATTTGATGAGA 57.489 33.333 0.00 0.00 0.00 3.27
1573 5526 8.414003 GCTTAAAGGAAGGGATACTATTTTTGG 58.586 37.037 0.00 0.00 35.49 3.28
1576 5529 9.190317 CAAGCTTAAAGGAAGGGATACTATTTT 57.810 33.333 0.00 0.00 35.49 1.82
1621 5589 7.692460 TGCTTCAAATCTCACTTTGATACAT 57.308 32.000 0.56 0.00 42.87 2.29
1732 5723 2.224548 GGGAAGGGGGATACTCAATTCG 60.225 54.545 0.00 0.00 41.13 3.34
1837 5832 7.898014 TGAGTACCTTATGCATCTCTTCTTA 57.102 36.000 0.19 0.00 0.00 2.10
1857 5852 4.162888 TGTGTGATGATGAGCCTAATGAGT 59.837 41.667 0.00 0.00 0.00 3.41
1936 5933 8.723311 TGGCTACTATTACAACACATGTTAAAC 58.277 33.333 0.00 0.00 43.63 2.01
1966 5963 4.953940 TGCAGCCTTCCTAAACATTTTT 57.046 36.364 0.00 0.00 0.00 1.94
2013 6019 2.134789 AATCCACCTGATGCTCCAAC 57.865 50.000 0.00 0.00 32.68 3.77
2254 6267 5.829391 AGACATAGCATCAATGTTGCCATTA 59.171 36.000 12.17 0.25 39.28 1.90
2312 6326 7.824289 TGATAAGTGGAATGGTGAGACTTTTAG 59.176 37.037 0.00 0.00 0.00 1.85
2313 6327 7.685481 TGATAAGTGGAATGGTGAGACTTTTA 58.315 34.615 0.00 0.00 0.00 1.52
2324 6338 5.923204 ACTCTAGCTTGATAAGTGGAATGG 58.077 41.667 0.00 0.00 0.00 3.16
2356 6370 4.762251 GTCTGTAAACCTGCTTCTGGAAAT 59.238 41.667 0.00 0.00 0.00 2.17
2439 6454 1.330655 GCCTAGCTGTCCCACTAGCA 61.331 60.000 0.00 0.00 42.29 3.49
2450 6465 0.107945 GAAGGTGAGGTGCCTAGCTG 60.108 60.000 0.00 0.00 34.81 4.24
2623 6641 5.783111 AGCATGGAAATTGTCTGGTAAAAC 58.217 37.500 0.00 0.00 0.00 2.43
2662 6684 5.425217 TCTGGCAGAAGTCATCTTTGGTATA 59.575 40.000 16.28 0.00 35.73 1.47
2756 6781 3.792401 TGGTACATCTAAAGCGGTGATG 58.208 45.455 10.78 10.78 42.14 3.07
2793 6825 6.713903 ACTATCTGGTATTGCTTCAATGATGG 59.286 38.462 2.57 2.24 35.54 3.51
2831 6863 5.012893 TGATCTGATGCCTATCGTGTCTAT 58.987 41.667 0.00 0.00 36.04 1.98
2864 6896 3.881688 GCTCCGTATGGTTCTACTAGACA 59.118 47.826 0.00 0.00 36.30 3.41
2878 6910 1.971357 CACCTATCTTGGGCTCCGTAT 59.029 52.381 0.00 0.00 0.00 3.06
2936 6973 6.857437 TCTGATGAAAGACCTATTGAGTCA 57.143 37.500 0.00 0.00 36.68 3.41
3043 7084 8.245195 TGTAGAACCATAGCAACTATCACATA 57.755 34.615 0.00 0.00 0.00 2.29
3154 7737 3.006672 CCTGCAAATAGTAGGGCGG 57.993 57.895 0.00 0.00 45.51 6.13
3230 7818 7.119846 AGGTGATTCTTTTATGACACTAGCAAC 59.880 37.037 0.00 0.00 0.00 4.17
3232 7820 6.711277 AGGTGATTCTTTTATGACACTAGCA 58.289 36.000 0.00 0.00 0.00 3.49
3241 7829 5.188434 TCCAGCAGAGGTGATTCTTTTATG 58.812 41.667 0.00 0.00 32.22 1.90
3274 7862 6.376864 TGAGGTCAATGTTTTCAAGTTCAAGA 59.623 34.615 0.00 0.00 0.00 3.02
3316 7904 1.168407 GGCAACTCTCAAGCACAGCA 61.168 55.000 0.00 0.00 0.00 4.41
3322 7910 2.481289 AGTTAGGGCAACTCTCAAGC 57.519 50.000 0.00 0.00 44.48 4.01
3331 7919 2.062636 AGAACCTCCAAGTTAGGGCAA 58.937 47.619 0.00 0.00 38.54 4.52
3339 7927 1.754201 GCAACCCAAGAACCTCCAAGT 60.754 52.381 0.00 0.00 0.00 3.16
3360 7948 6.500684 TGGAGTTGATCAAGAAACAATAGC 57.499 37.500 8.80 0.00 0.00 2.97
3467 8055 2.416431 GCATGGTCATTGTTGGAGCTTC 60.416 50.000 0.00 0.00 34.04 3.86
3540 8152 8.167691 AGGATCCATATTGAATAAGGTATGCT 57.832 34.615 15.82 6.69 0.00 3.79
3556 8168 9.778741 GAACTATCACAAACATAAGGATCCATA 57.221 33.333 15.82 6.88 0.00 2.74
3608 8221 4.261801 AGTACATGCCAGAATTGGTACAC 58.738 43.478 0.00 0.00 46.80 2.90
3624 8237 1.946984 TCTGAACGGGGGAAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
3631 8244 0.982852 AGATGCATCTGAACGGGGGA 60.983 55.000 28.21 0.00 35.42 4.81
3637 8251 8.213518 TCAAAGGTATTAAGATGCATCTGAAC 57.786 34.615 29.34 21.70 37.19 3.18
3662 8276 6.919775 AGTCCTTTGATACAACACTAGACT 57.080 37.500 0.00 0.00 0.00 3.24
3663 8277 7.828712 ACTAGTCCTTTGATACAACACTAGAC 58.171 38.462 19.72 9.15 0.00 2.59
3695 8309 2.839975 TGACACCGACAACAAGCATAA 58.160 42.857 0.00 0.00 0.00 1.90
3763 8377 1.561542 CCCTGCCTTCTGTTACCATCT 59.438 52.381 0.00 0.00 0.00 2.90
3775 8389 2.113139 CAACGTGTCCCCTGCCTT 59.887 61.111 0.00 0.00 0.00 4.35
3790 8404 1.551883 GCCCGAACCTAGGTAAGACAA 59.448 52.381 16.67 0.00 0.00 3.18
3894 8508 4.079096 AGCTTCTAGGGTTTAGCCTCTCTA 60.079 45.833 3.32 0.00 37.43 2.43
4299 8913 1.524961 CAGGGGTGCGCCATTAGTA 59.475 57.895 19.98 0.00 36.17 1.82
4317 8931 1.439679 GCCTATACTAATGGCGCACC 58.560 55.000 10.83 0.00 37.11 5.01
4372 9002 8.983724 CCGCCTTCAAAATTCAAAAATACTAAA 58.016 29.630 0.00 0.00 0.00 1.85
4380 9010 4.408182 TTCCCGCCTTCAAAATTCAAAA 57.592 36.364 0.00 0.00 0.00 2.44
4381 9011 4.408182 TTTCCCGCCTTCAAAATTCAAA 57.592 36.364 0.00 0.00 0.00 2.69
4382 9012 4.408182 TTTTCCCGCCTTCAAAATTCAA 57.592 36.364 0.00 0.00 0.00 2.69
4383 9013 4.615588 ATTTTCCCGCCTTCAAAATTCA 57.384 36.364 0.00 0.00 0.00 2.57
4384 9014 5.720202 ACTATTTTCCCGCCTTCAAAATTC 58.280 37.500 0.00 0.00 33.02 2.17
4385 9015 5.738619 ACTATTTTCCCGCCTTCAAAATT 57.261 34.783 0.00 0.00 33.02 1.82
4386 9016 5.949952 ACTACTATTTTCCCGCCTTCAAAAT 59.050 36.000 0.00 0.00 34.75 1.82
4387 9017 5.182380 CACTACTATTTTCCCGCCTTCAAAA 59.818 40.000 0.00 0.00 0.00 2.44
4388 9018 4.698304 CACTACTATTTTCCCGCCTTCAAA 59.302 41.667 0.00 0.00 0.00 2.69
4389 9019 4.258543 CACTACTATTTTCCCGCCTTCAA 58.741 43.478 0.00 0.00 0.00 2.69
4390 9020 3.370103 CCACTACTATTTTCCCGCCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
4391 9021 3.203716 CCACTACTATTTTCCCGCCTTC 58.796 50.000 0.00 0.00 0.00 3.46
4392 9022 2.682858 GCCACTACTATTTTCCCGCCTT 60.683 50.000 0.00 0.00 0.00 4.35
4393 9023 1.134189 GCCACTACTATTTTCCCGCCT 60.134 52.381 0.00 0.00 0.00 5.52
4394 9024 1.306148 GCCACTACTATTTTCCCGCC 58.694 55.000 0.00 0.00 0.00 6.13
4395 9025 1.669265 GTGCCACTACTATTTTCCCGC 59.331 52.381 0.00 0.00 0.00 6.13
4396 9026 2.676342 GTGTGCCACTACTATTTTCCCG 59.324 50.000 0.00 0.00 0.00 5.14
4397 9027 3.014623 GGTGTGCCACTACTATTTTCCC 58.985 50.000 0.00 0.00 34.40 3.97
4398 9028 2.676342 CGGTGTGCCACTACTATTTTCC 59.324 50.000 0.00 0.00 34.40 3.13
4399 9029 3.332034 ACGGTGTGCCACTACTATTTTC 58.668 45.455 0.00 0.00 34.40 2.29
4400 9030 3.007614 AGACGGTGTGCCACTACTATTTT 59.992 43.478 0.00 0.00 34.40 1.82
4401 9031 2.565834 AGACGGTGTGCCACTACTATTT 59.434 45.455 0.00 0.00 34.40 1.40
4402 9032 2.176889 AGACGGTGTGCCACTACTATT 58.823 47.619 0.00 0.00 34.40 1.73
4403 9033 1.848652 AGACGGTGTGCCACTACTAT 58.151 50.000 0.00 0.00 34.40 2.12
4404 9034 2.489329 GTTAGACGGTGTGCCACTACTA 59.511 50.000 0.00 4.78 34.40 1.82
4405 9035 1.271656 GTTAGACGGTGTGCCACTACT 59.728 52.381 0.00 5.49 34.40 2.57
4406 9036 1.670967 GGTTAGACGGTGTGCCACTAC 60.671 57.143 0.00 0.00 34.40 2.73
4407 9037 0.604578 GGTTAGACGGTGTGCCACTA 59.395 55.000 0.00 0.00 34.40 2.74
4408 9038 1.370064 GGTTAGACGGTGTGCCACT 59.630 57.895 0.00 0.00 34.40 4.00
4409 9039 1.670083 GGGTTAGACGGTGTGCCAC 60.670 63.158 0.00 0.00 34.09 5.01
4410 9040 2.745037 GGGTTAGACGGTGTGCCA 59.255 61.111 0.00 0.00 34.09 4.92
4411 9041 2.046604 GGGGTTAGACGGTGTGCC 60.047 66.667 0.00 0.00 0.00 5.01
4412 9042 2.046604 GGGGGTTAGACGGTGTGC 60.047 66.667 0.00 0.00 0.00 4.57
4413 9043 1.004200 GTGGGGGTTAGACGGTGTG 60.004 63.158 0.00 0.00 0.00 3.82
4414 9044 2.219164 GGTGGGGGTTAGACGGTGT 61.219 63.158 0.00 0.00 0.00 4.16
4415 9045 2.666812 GGTGGGGGTTAGACGGTG 59.333 66.667 0.00 0.00 0.00 4.94
4416 9046 2.999063 CGGTGGGGGTTAGACGGT 60.999 66.667 0.00 0.00 0.00 4.83
4417 9047 2.999063 ACGGTGGGGGTTAGACGG 60.999 66.667 0.00 0.00 0.00 4.79
4418 9048 2.263540 CACGGTGGGGGTTAGACG 59.736 66.667 0.00 0.00 0.00 4.18
4419 9049 2.046604 GCACGGTGGGGGTTAGAC 60.047 66.667 10.60 0.00 0.00 2.59
4420 9050 3.697747 CGCACGGTGGGGGTTAGA 61.698 66.667 16.62 0.00 0.00 2.10
4437 9067 9.628746 AATTCAAAATTCAAAAATAGCAATGGC 57.371 25.926 0.00 0.00 41.61 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.