Multiple sequence alignment - TraesCS5A01G470600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G470600 chr5A 100.000 2783 0 0 1 2783 647369146 647371928 0.000000e+00 5140.0
1 TraesCS5A01G470600 chr5A 81.838 903 88 35 896 1746 647480820 647481698 0.000000e+00 689.0
2 TraesCS5A01G470600 chr5A 83.333 444 32 21 874 1287 633283475 633283906 3.390000e-99 372.0
3 TraesCS5A01G470600 chr5A 91.729 266 22 0 1477 1742 633283989 633284254 1.220000e-98 370.0
4 TraesCS5A01G470600 chr5D 90.244 2009 117 38 1 1964 520132238 520134212 0.000000e+00 2551.0
5 TraesCS5A01G470600 chr5D 82.778 900 94 35 896 1747 520194669 520195555 0.000000e+00 747.0
6 TraesCS5A01G470600 chr5D 75.967 362 66 9 133 475 346643760 346643401 1.710000e-37 167.0
7 TraesCS5A01G470600 chr5D 85.870 92 8 2 1877 1963 520195646 520195737 2.950000e-15 93.5
8 TraesCS5A01G470600 chr5D 97.500 40 1 0 2744 2783 520135203 520135242 4.970000e-08 69.4
9 TraesCS5A01G470600 chr5D 100.000 28 0 0 2039 2066 421531336 421531363 5.000000e-03 52.8
10 TraesCS5A01G470600 chr5B 86.940 1317 84 38 604 1870 655150550 655151828 0.000000e+00 1399.0
11 TraesCS5A01G470600 chr5B 82.464 1380 124 48 745 2069 655163476 655164792 0.000000e+00 1099.0
12 TraesCS5A01G470600 chr5B 82.040 902 104 36 896 1749 655204384 655205275 0.000000e+00 715.0
13 TraesCS5A01G470600 chr5B 80.859 559 54 22 874 1407 635907747 635908277 9.350000e-105 390.0
14 TraesCS5A01G470600 chr5B 74.245 497 98 20 1 472 504812807 504813298 6.120000e-42 182.0
15 TraesCS5A01G470600 chr5B 86.154 130 14 4 2158 2287 655206230 655206355 1.340000e-28 137.0
16 TraesCS5A01G470600 chr3A 84.757 597 42 19 1494 2053 170993139 170992555 1.130000e-153 553.0
17 TraesCS5A01G470600 chr3A 86.957 345 29 11 765 1108 170993836 170993507 9.410000e-100 374.0
18 TraesCS5A01G470600 chr3A 80.442 317 55 6 2425 2739 676809554 676809243 4.630000e-58 235.0
19 TraesCS5A01G470600 chr3A 86.239 218 9 9 1185 1402 170993472 170993276 1.680000e-52 217.0
20 TraesCS5A01G470600 chr3A 71.840 451 88 20 40 472 716543838 716544267 2.950000e-15 93.5
21 TraesCS5A01G470600 chr3D 83.981 618 45 21 1491 2066 157372065 157372670 6.780000e-151 544.0
22 TraesCS5A01G470600 chr3D 87.679 349 22 12 765 1108 157371368 157371700 1.210000e-103 387.0
23 TraesCS5A01G470600 chr3D 82.390 318 48 8 2425 2739 541295948 541295636 1.270000e-68 270.0
24 TraesCS5A01G470600 chr3D 86.239 218 9 9 1185 1402 157371735 157371931 1.680000e-52 217.0
25 TraesCS5A01G470600 chr4B 93.061 245 17 0 1505 1749 496285673 496285429 2.640000e-95 359.0
26 TraesCS5A01G470600 chr4B 76.591 487 77 24 1 472 77022352 77022816 1.670000e-57 233.0
27 TraesCS5A01G470600 chr3B 83.598 378 38 12 736 1108 228517334 228517692 1.600000e-87 333.0
28 TraesCS5A01G470600 chr3B 89.655 58 6 0 1996 2053 228577895 228577952 1.070000e-09 75.0
29 TraesCS5A01G470600 chr7D 77.299 511 85 17 1 483 484347481 484347988 3.530000e-69 272.0
30 TraesCS5A01G470600 chr6B 78.826 477 43 20 955 1401 123368182 123368630 4.570000e-68 268.0
31 TraesCS5A01G470600 chr6B 74.104 502 102 18 4 479 34000171 34000670 6.120000e-42 182.0
32 TraesCS5A01G470600 chr6B 100.000 29 0 0 2041 2069 345209033 345209005 1.000000e-03 54.7
33 TraesCS5A01G470600 chr6B 89.130 46 2 3 2024 2069 707294109 707294067 1.000000e-03 54.7
34 TraesCS5A01G470600 chr1D 76.353 499 88 20 1 472 102771120 102771615 9.960000e-60 241.0
35 TraesCS5A01G470600 chr6D 81.063 301 41 16 2449 2742 98172549 98172258 2.790000e-55 226.0
36 TraesCS5A01G470600 chr6D 100.000 31 0 0 2039 2069 221840841 221840811 1.080000e-04 58.4
37 TraesCS5A01G470600 chr1A 80.292 274 44 9 3 270 118816296 118816027 6.080000e-47 198.0
38 TraesCS5A01G470600 chr1A 77.561 205 35 9 291 487 1678020 1677819 2.270000e-21 113.0
39 TraesCS5A01G470600 chrUn 74.458 415 86 16 72 472 226037830 226038238 7.980000e-36 161.0
40 TraesCS5A01G470600 chrUn 74.458 415 86 16 72 472 250213140 250213548 7.980000e-36 161.0
41 TraesCS5A01G470600 chrUn 80.714 140 22 4 1 135 463617123 463617262 1.360000e-18 104.0
42 TraesCS5A01G470600 chr4A 75.127 394 71 16 103 474 719146285 719146673 2.870000e-35 159.0
43 TraesCS5A01G470600 chr2D 84.076 157 20 4 41 193 59850159 59850314 2.230000e-31 147.0
44 TraesCS5A01G470600 chr7A 100.000 28 0 0 2042 2069 105214887 105214860 5.000000e-03 52.8
45 TraesCS5A01G470600 chr2A 96.774 31 1 0 2039 2069 611961418 611961448 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G470600 chr5A 647369146 647371928 2782 False 5140.000000 5140 100.000000 1 2783 1 chr5A.!!$F1 2782
1 TraesCS5A01G470600 chr5A 647480820 647481698 878 False 689.000000 689 81.838000 896 1746 1 chr5A.!!$F2 850
2 TraesCS5A01G470600 chr5A 633283475 633284254 779 False 371.000000 372 87.531000 874 1742 2 chr5A.!!$F3 868
3 TraesCS5A01G470600 chr5D 520132238 520135242 3004 False 1310.200000 2551 93.872000 1 2783 2 chr5D.!!$F2 2782
4 TraesCS5A01G470600 chr5D 520194669 520195737 1068 False 420.250000 747 84.324000 896 1963 2 chr5D.!!$F3 1067
5 TraesCS5A01G470600 chr5B 655150550 655151828 1278 False 1399.000000 1399 86.940000 604 1870 1 chr5B.!!$F3 1266
6 TraesCS5A01G470600 chr5B 655163476 655164792 1316 False 1099.000000 1099 82.464000 745 2069 1 chr5B.!!$F4 1324
7 TraesCS5A01G470600 chr5B 655204384 655206355 1971 False 426.000000 715 84.097000 896 2287 2 chr5B.!!$F5 1391
8 TraesCS5A01G470600 chr5B 635907747 635908277 530 False 390.000000 390 80.859000 874 1407 1 chr5B.!!$F2 533
9 TraesCS5A01G470600 chr3A 170992555 170993836 1281 True 381.333333 553 85.984333 765 2053 3 chr3A.!!$R2 1288
10 TraesCS5A01G470600 chr3D 157371368 157372670 1302 False 382.666667 544 85.966333 765 2066 3 chr3D.!!$F1 1301
11 TraesCS5A01G470600 chr7D 484347481 484347988 507 False 272.000000 272 77.299000 1 483 1 chr7D.!!$F1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 415 0.830444 TGTAGAGGTCGGGTGTGCTT 60.83 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 3379 0.033504 GAACACAAGGAGAGCCGTCA 59.966 55.0 0.0 0.0 39.96 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 4.269183 CAACCTGTTATACCTGGCAATGA 58.731 43.478 0.00 0.00 0.00 2.57
247 251 1.377072 CCATGACATGGTCGGTGCA 60.377 57.895 24.15 0.00 45.54 4.57
272 276 9.612620 CAAATAAGGTCATTGTTGTAGTTTCTC 57.387 33.333 0.00 0.00 0.00 2.87
277 281 4.748102 GTCATTGTTGTAGTTTCTCGACCA 59.252 41.667 0.00 0.00 0.00 4.02
328 333 7.496529 TGCATAGCTTTGATCTTGTATAACC 57.503 36.000 8.49 0.00 0.00 2.85
331 336 8.072567 GCATAGCTTTGATCTTGTATAACCTTG 58.927 37.037 8.49 0.00 0.00 3.61
342 347 7.857456 TCTTGTATAACCTTGCTATTTCCTGA 58.143 34.615 0.00 0.00 0.00 3.86
376 381 4.300189 TGTGTGTGTTATTCTTGGTTGC 57.700 40.909 0.00 0.00 0.00 4.17
384 389 2.818130 ATTCTTGGTTGCGTGCATTT 57.182 40.000 0.00 0.00 0.00 2.32
393 398 3.564511 GTTGCGTGCATTTCAACTATGT 58.435 40.909 16.41 0.00 37.63 2.29
408 413 1.067212 CTATGTAGAGGTCGGGTGTGC 59.933 57.143 0.00 0.00 0.00 4.57
410 415 0.830444 TGTAGAGGTCGGGTGTGCTT 60.830 55.000 0.00 0.00 0.00 3.91
414 419 1.066143 AGAGGTCGGGTGTGCTTATTG 60.066 52.381 0.00 0.00 0.00 1.90
416 421 1.903860 AGGTCGGGTGTGCTTATTGTA 59.096 47.619 0.00 0.00 0.00 2.41
444 449 1.470098 CCTCTCGGTGCTTCATTTTGG 59.530 52.381 0.00 0.00 0.00 3.28
447 452 1.200020 CTCGGTGCTTCATTTTGGGTC 59.800 52.381 0.00 0.00 0.00 4.46
456 461 7.148423 GGTGCTTCATTTTGGGTCAATAAAATC 60.148 37.037 0.00 0.00 35.07 2.17
464 469 4.349365 TGGGTCAATAAAATCCACCCTTC 58.651 43.478 6.98 0.00 46.24 3.46
467 472 4.095932 GGTCAATAAAATCCACCCTTCGTC 59.904 45.833 0.00 0.00 0.00 4.20
472 477 2.094762 AATCCACCCTTCGTCGAAAG 57.905 50.000 9.30 2.65 0.00 2.62
496 501 7.523415 AGATAAGTTTACCAAGGACCAAAGAA 58.477 34.615 0.00 0.00 0.00 2.52
497 502 7.665974 AGATAAGTTTACCAAGGACCAAAGAAG 59.334 37.037 0.00 0.00 0.00 2.85
510 515 5.372547 ACCAAAGAAGAAACGAATTAGGC 57.627 39.130 0.00 0.00 0.00 3.93
522 527 9.614792 AGAAACGAATTAGGCTGAAAATATACT 57.385 29.630 0.00 0.00 0.00 2.12
526 531 7.657761 ACGAATTAGGCTGAAAATATACTCAGG 59.342 37.037 13.26 1.07 39.61 3.86
743 756 2.219674 GGCGAATGAGCGAAATCTACAG 59.780 50.000 0.00 0.00 38.18 2.74
798 818 3.799753 CCGCCAATTCGGTCTCTG 58.200 61.111 0.00 0.00 44.18 3.35
799 819 1.079127 CCGCCAATTCGGTCTCTGT 60.079 57.895 0.00 0.00 44.18 3.41
800 820 1.084370 CCGCCAATTCGGTCTCTGTC 61.084 60.000 0.00 0.00 44.18 3.51
864 889 4.200283 CGAGGCGAGCTCTCCCAC 62.200 72.222 19.20 12.46 0.00 4.61
935 974 1.838077 CCTCCCCTCTTTTCACCGTAT 59.162 52.381 0.00 0.00 0.00 3.06
936 975 3.036091 CCTCCCCTCTTTTCACCGTATA 58.964 50.000 0.00 0.00 0.00 1.47
987 1047 1.715019 CCACCCACCACCAAAGAGGA 61.715 60.000 0.00 0.00 41.22 3.71
1114 1174 2.174319 GGGATCGCCAAGAAGTCGC 61.174 63.158 0.00 0.00 35.15 5.19
1175 1268 4.735132 CGAGCCGGCGACCAAGAA 62.735 66.667 23.20 0.00 0.00 2.52
1183 1276 2.251642 GCGACCAAGAAGCCAACGT 61.252 57.895 0.00 0.00 0.00 3.99
1270 1372 1.377725 ACCAAGGAGCAGATTGCCG 60.378 57.895 0.00 0.00 46.52 5.69
1273 1375 3.272364 AAGGAGCAGATTGCCGCCA 62.272 57.895 11.51 0.00 46.52 5.69
1407 1530 4.324267 CGTCCAAGATGAAGGTTAAGGTT 58.676 43.478 0.00 0.00 0.00 3.50
1482 1665 2.029844 GCTATCCGCGAAGATGCCC 61.030 63.158 8.23 0.00 0.00 5.36
1870 2164 5.006844 ACGATCTATGACGAGTGTAGTCTTG 59.993 44.000 0.00 0.00 39.24 3.02
1879 2173 4.142578 ACGAGTGTAGTCTTGATAGCTGTG 60.143 45.833 0.00 0.00 0.00 3.66
1943 2252 8.899427 ATCTGGTAGATGATGTAATGAAACTG 57.101 34.615 0.00 0.00 32.80 3.16
2092 3133 2.796032 GCACAAAGAACTTGCTGGACAC 60.796 50.000 0.00 0.00 38.75 3.67
2095 3136 3.067180 ACAAAGAACTTGCTGGACACATG 59.933 43.478 0.00 0.00 38.75 3.21
2096 3137 2.645838 AGAACTTGCTGGACACATGT 57.354 45.000 0.00 0.00 0.00 3.21
2097 3138 2.498167 AGAACTTGCTGGACACATGTC 58.502 47.619 0.00 3.27 44.04 3.06
2108 3149 3.057969 GACACATGTCCATCAAGTCCA 57.942 47.619 0.00 0.00 39.07 4.02
2109 3150 3.005554 GACACATGTCCATCAAGTCCAG 58.994 50.000 0.00 0.00 39.07 3.86
2110 3151 2.290514 ACACATGTCCATCAAGTCCAGG 60.291 50.000 0.00 0.00 0.00 4.45
2111 3152 2.026915 CACATGTCCATCAAGTCCAGGA 60.027 50.000 0.00 0.00 0.00 3.86
2124 3165 3.419793 CCAGGACTTTCTGGCAACA 57.580 52.632 0.00 0.00 46.47 3.33
2139 3180 5.125100 TGGCAACATTCTCTCACATTTTC 57.875 39.130 0.00 0.00 46.17 2.29
2140 3181 4.022068 TGGCAACATTCTCTCACATTTTCC 60.022 41.667 0.00 0.00 46.17 3.13
2141 3182 4.022068 GGCAACATTCTCTCACATTTTCCA 60.022 41.667 0.00 0.00 0.00 3.53
2142 3183 5.337009 GGCAACATTCTCTCACATTTTCCAT 60.337 40.000 0.00 0.00 0.00 3.41
2143 3184 6.127647 GGCAACATTCTCTCACATTTTCCATA 60.128 38.462 0.00 0.00 0.00 2.74
2144 3185 7.315142 GCAACATTCTCTCACATTTTCCATAA 58.685 34.615 0.00 0.00 0.00 1.90
2145 3186 7.274250 GCAACATTCTCTCACATTTTCCATAAC 59.726 37.037 0.00 0.00 0.00 1.89
2146 3187 8.298854 CAACATTCTCTCACATTTTCCATAACA 58.701 33.333 0.00 0.00 0.00 2.41
2147 3188 8.408043 ACATTCTCTCACATTTTCCATAACAA 57.592 30.769 0.00 0.00 0.00 2.83
2148 3189 9.028284 ACATTCTCTCACATTTTCCATAACAAT 57.972 29.630 0.00 0.00 0.00 2.71
2162 3203 7.515004 TCCATAACAATATATCAGGAGGCAT 57.485 36.000 0.00 0.00 0.00 4.40
2169 3210 1.413118 TATCAGGAGGCATCGCAGAA 58.587 50.000 0.00 0.00 43.58 3.02
2178 3219 2.149578 GGCATCGCAGAATAGCTTGAT 58.850 47.619 0.00 0.00 43.58 2.57
2179 3220 2.095869 GGCATCGCAGAATAGCTTGATG 60.096 50.000 0.00 0.00 43.58 3.07
2221 3262 7.121168 GCATATGCCAACCATAGTACACATAAT 59.879 37.037 17.26 0.00 39.65 1.28
2226 3267 7.394641 TGCCAACCATAGTACACATAATTTTGA 59.605 33.333 2.69 0.00 0.00 2.69
2269 3310 3.306166 CGAAAATACTACTTCACAGGGCG 59.694 47.826 0.00 0.00 0.00 6.13
2271 3312 5.410355 AAAATACTACTTCACAGGGCGTA 57.590 39.130 0.00 0.00 0.00 4.42
2321 3362 8.752005 ATAAAGATAATTAAACAGGCTCAGCA 57.248 30.769 0.00 0.00 0.00 4.41
2322 3363 6.442513 AAGATAATTAAACAGGCTCAGCAC 57.557 37.500 0.00 0.00 0.00 4.40
2323 3364 4.572389 AGATAATTAAACAGGCTCAGCACG 59.428 41.667 0.00 0.00 0.00 5.34
2324 3365 2.185004 ATTAAACAGGCTCAGCACGT 57.815 45.000 0.00 0.00 0.00 4.49
2325 3366 1.961793 TTAAACAGGCTCAGCACGTT 58.038 45.000 0.00 0.00 0.00 3.99
2326 3367 1.961793 TAAACAGGCTCAGCACGTTT 58.038 45.000 17.07 17.07 37.84 3.60
2327 3368 0.381801 AAACAGGCTCAGCACGTTTG 59.618 50.000 13.34 0.00 34.70 2.93
2337 3378 3.996825 GCACGTTTGCCATTCTAGG 57.003 52.632 0.00 0.00 43.66 3.02
2338 3379 1.165270 GCACGTTTGCCATTCTAGGT 58.835 50.000 0.00 0.00 43.66 3.08
2339 3380 1.135689 GCACGTTTGCCATTCTAGGTG 60.136 52.381 0.00 0.00 43.66 4.00
2340 3381 2.422597 CACGTTTGCCATTCTAGGTGA 58.577 47.619 0.00 0.00 0.00 4.02
2341 3382 2.159627 CACGTTTGCCATTCTAGGTGAC 59.840 50.000 0.00 0.00 0.00 3.67
2342 3383 1.393539 CGTTTGCCATTCTAGGTGACG 59.606 52.381 0.00 0.00 0.00 4.35
2343 3384 1.737793 GTTTGCCATTCTAGGTGACGG 59.262 52.381 0.00 0.00 0.00 4.79
2344 3385 0.392461 TTGCCATTCTAGGTGACGGC 60.392 55.000 0.00 0.00 41.50 5.68
2345 3386 1.264749 TGCCATTCTAGGTGACGGCT 61.265 55.000 0.00 0.00 41.61 5.52
2346 3387 0.530870 GCCATTCTAGGTGACGGCTC 60.531 60.000 0.00 0.00 39.30 4.70
2347 3388 1.115467 CCATTCTAGGTGACGGCTCT 58.885 55.000 0.00 0.00 0.00 4.09
2348 3389 1.067821 CCATTCTAGGTGACGGCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
2349 3390 1.067821 CATTCTAGGTGACGGCTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
2350 3391 0.331954 TTCTAGGTGACGGCTCTCCT 59.668 55.000 10.79 10.79 42.15 3.69
2351 3392 0.331954 TCTAGGTGACGGCTCTCCTT 59.668 55.000 11.12 0.54 40.32 3.36
2352 3393 0.457851 CTAGGTGACGGCTCTCCTTG 59.542 60.000 11.12 7.22 40.32 3.61
2353 3394 0.251653 TAGGTGACGGCTCTCCTTGT 60.252 55.000 11.12 0.00 40.32 3.16
2354 3395 1.374758 GGTGACGGCTCTCCTTGTG 60.375 63.158 0.00 0.00 0.00 3.33
2355 3396 1.367840 GTGACGGCTCTCCTTGTGT 59.632 57.895 0.00 0.00 0.00 3.72
2356 3397 0.249911 GTGACGGCTCTCCTTGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
2357 3398 0.033504 TGACGGCTCTCCTTGTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
2358 3399 0.033504 GACGGCTCTCCTTGTGTTCA 59.966 55.000 0.00 0.00 0.00 3.18
2359 3400 0.249911 ACGGCTCTCCTTGTGTTCAC 60.250 55.000 0.00 0.00 0.00 3.18
2360 3401 0.249868 CGGCTCTCCTTGTGTTCACA 60.250 55.000 1.23 1.23 0.00 3.58
2361 3402 1.230324 GGCTCTCCTTGTGTTCACAC 58.770 55.000 5.07 2.93 46.59 3.82
2412 3453 9.838339 CTCCTATTGATTTAATGTACAAGGTCT 57.162 33.333 0.00 0.00 0.00 3.85
2418 3459 5.664294 TTTAATGTACAAGGTCTAGCGGA 57.336 39.130 0.00 0.00 0.00 5.54
2451 3499 6.513180 TCTTACTGCTCCTATTGATTTACCG 58.487 40.000 0.00 0.00 0.00 4.02
2460 3508 6.646267 TCCTATTGATTTACCGTACAAAGCT 58.354 36.000 0.00 0.00 0.00 3.74
2467 3515 1.226746 ACCGTACAAAGCTCAGCAAC 58.773 50.000 0.00 0.00 0.00 4.17
2471 3519 2.224079 CGTACAAAGCTCAGCAACATGT 59.776 45.455 0.00 0.34 0.00 3.21
2472 3520 3.665323 CGTACAAAGCTCAGCAACATGTC 60.665 47.826 0.00 0.00 0.00 3.06
2478 3526 2.225019 AGCTCAGCAACATGTCGAAAAG 59.775 45.455 0.00 0.00 0.00 2.27
2481 3529 1.879380 CAGCAACATGTCGAAAAGGGA 59.121 47.619 0.00 0.00 0.00 4.20
2485 3533 3.674753 GCAACATGTCGAAAAGGGATTTG 59.325 43.478 0.00 0.00 0.00 2.32
2530 3578 2.083774 ACCACAGGTGCATTACATTCG 58.916 47.619 0.00 0.00 32.98 3.34
2533 3581 2.352651 CACAGGTGCATTACATTCGAGG 59.647 50.000 0.00 0.00 0.00 4.63
2539 3587 3.553511 GTGCATTACATTCGAGGAGACTG 59.446 47.826 0.00 0.00 44.43 3.51
2549 3597 4.436242 TCGAGGAGACTGATACAAACAC 57.564 45.455 0.00 0.00 44.43 3.32
2553 3601 3.321111 AGGAGACTGATACAAACACACGT 59.679 43.478 0.00 0.00 41.13 4.49
2556 3604 4.883083 AGACTGATACAAACACACGTCAT 58.117 39.130 0.00 0.00 0.00 3.06
2559 3607 5.237815 ACTGATACAAACACACGTCATCAT 58.762 37.500 0.00 0.00 0.00 2.45
2572 3620 0.789601 TCATCATCGCACACAACACG 59.210 50.000 0.00 0.00 0.00 4.49
2598 3646 4.074970 CCAAGACAAGATACAAAGGTGCT 58.925 43.478 0.00 0.00 0.00 4.40
2612 3660 4.764896 TGCTGAGCACTGACACAG 57.235 55.556 1.40 0.00 37.52 3.66
2617 3665 1.963338 GAGCACTGACACAGCACCC 60.963 63.158 0.00 0.00 34.37 4.61
2631 3679 1.295423 CACCCCACCGACTACCAAG 59.705 63.158 0.00 0.00 0.00 3.61
2639 3687 3.126343 CCACCGACTACCAAGCAAATTAC 59.874 47.826 0.00 0.00 0.00 1.89
2682 3730 1.991099 GAGCGGACGTAGACCTCCAC 61.991 65.000 0.00 0.00 40.99 4.02
2702 3750 3.688185 CACCATGAGAATCCACAACAGAG 59.312 47.826 0.00 0.00 0.00 3.35
2704 3752 4.226846 ACCATGAGAATCCACAACAGAGAT 59.773 41.667 0.00 0.00 0.00 2.75
2740 3788 2.907910 CGAAGCCAGAACTCCAAATG 57.092 50.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.003812 AGGTATAACAGGTTGGCGCAA 59.996 47.619 10.83 0.00 0.00 4.85
55 57 2.614983 AGGTAACACGCAAAAACATCGT 59.385 40.909 0.00 0.00 41.41 3.73
247 251 8.504005 CGAGAAACTACAACAATGACCTTATTT 58.496 33.333 0.00 0.00 0.00 1.40
272 276 4.454728 AAAATGATCAAACCCATGGTCG 57.545 40.909 11.73 0.00 33.12 4.79
297 301 1.882912 TCAAAGCTATGCATAGGCGG 58.117 50.000 30.14 17.81 45.35 6.13
328 333 7.305474 ACAAAAATACGTCAGGAAATAGCAAG 58.695 34.615 0.00 0.00 0.00 4.01
331 336 8.395633 ACATACAAAAATACGTCAGGAAATAGC 58.604 33.333 0.00 0.00 0.00 2.97
338 343 6.077197 CACACACATACAAAAATACGTCAGG 58.923 40.000 0.00 0.00 0.00 3.86
342 347 9.601971 GAATAACACACACATACAAAAATACGT 57.398 29.630 0.00 0.00 0.00 3.57
376 381 4.870426 ACCTCTACATAGTTGAAATGCACG 59.130 41.667 0.00 0.00 0.00 5.34
384 389 3.021695 CACCCGACCTCTACATAGTTGA 58.978 50.000 0.00 0.00 0.00 3.18
393 398 2.154567 ATAAGCACACCCGACCTCTA 57.845 50.000 0.00 0.00 0.00 2.43
444 449 4.014406 ACGAAGGGTGGATTTTATTGACC 58.986 43.478 0.00 0.00 0.00 4.02
447 452 3.936453 TCGACGAAGGGTGGATTTTATTG 59.064 43.478 0.00 0.00 0.00 1.90
456 461 2.953466 TATCTTTCGACGAAGGGTGG 57.047 50.000 18.24 5.38 0.00 4.61
464 469 5.865552 TCCTTGGTAAACTTATCTTTCGACG 59.134 40.000 0.00 0.00 0.00 5.12
467 472 5.935789 TGGTCCTTGGTAAACTTATCTTTCG 59.064 40.000 0.00 0.00 0.00 3.46
472 477 7.664318 TCTTCTTTGGTCCTTGGTAAACTTATC 59.336 37.037 0.00 0.00 0.00 1.75
496 501 9.614792 AGTATATTTTCAGCCTAATTCGTTTCT 57.385 29.630 0.00 0.00 0.00 2.52
497 502 9.865484 GAGTATATTTTCAGCCTAATTCGTTTC 57.135 33.333 0.00 0.00 0.00 2.78
510 515 6.016777 GCCATGGAACCTGAGTATATTTTCAG 60.017 42.308 18.40 8.47 40.35 3.02
522 527 0.405198 ACATGTGCCATGGAACCTGA 59.595 50.000 29.29 9.38 0.00 3.86
526 531 2.068837 CACAACATGTGCCATGGAAC 57.931 50.000 16.92 16.92 41.89 3.62
697 709 4.621068 TTAGCTGTGCTGCATGTAAATC 57.379 40.909 5.27 0.00 40.10 2.17
743 756 2.500229 TGAAATTTGGGTCCGACTGTC 58.500 47.619 0.00 0.00 0.00 3.51
794 814 0.037512 CTGCAGGGTGACAGACAGAG 60.038 60.000 5.57 0.00 35.90 3.35
797 817 1.699054 AAGCTGCAGGGTGACAGACA 61.699 55.000 17.12 0.00 35.90 3.41
798 818 0.321671 TAAGCTGCAGGGTGACAGAC 59.678 55.000 17.12 0.00 35.90 3.51
799 819 0.610174 CTAAGCTGCAGGGTGACAGA 59.390 55.000 17.12 0.00 35.90 3.41
800 820 0.322975 ACTAAGCTGCAGGGTGACAG 59.677 55.000 17.12 3.70 36.96 3.51
935 974 3.444916 GAGTTGATCGGCGACAAGATTA 58.555 45.455 13.76 0.00 32.98 1.75
936 975 2.271800 GAGTTGATCGGCGACAAGATT 58.728 47.619 13.76 7.49 32.98 2.40
987 1047 1.535204 CCGGCATGGCTTGGTCTTTT 61.535 55.000 18.09 0.00 0.00 2.27
1024 1084 3.191539 GCAGCGCTCCGAGGAAAG 61.192 66.667 7.13 0.00 0.00 2.62
1089 1149 0.541863 TCTTGGCGATCCCTCCTTTC 59.458 55.000 0.00 0.00 0.00 2.62
1164 1230 2.954611 GTTGGCTTCTTGGTCGCC 59.045 61.111 0.00 0.00 44.02 5.54
1258 1360 2.719979 CATGGCGGCAATCTGCTC 59.280 61.111 18.31 0.00 44.28 4.26
1407 1530 3.243053 TTGGGAACTCCGGCGGAA 61.243 61.111 30.59 11.28 38.76 4.30
1870 2164 2.100584 CTCCAGTCCAGACACAGCTATC 59.899 54.545 0.00 0.00 0.00 2.08
1879 2173 0.827368 GGGTGATCTCCAGTCCAGAC 59.173 60.000 15.46 0.00 0.00 3.51
2009 2335 7.540474 AGAGGTAGTAAATGACTGACAAAGA 57.460 36.000 0.00 0.00 39.39 2.52
2013 2339 6.948886 AGAGAAGAGGTAGTAAATGACTGACA 59.051 38.462 0.00 0.00 39.39 3.58
2069 2455 1.949525 TCCAGCAAGTTCTTTGTGCTC 59.050 47.619 0.00 0.00 45.32 4.26
2071 2457 1.405105 TGTCCAGCAAGTTCTTTGTGC 59.595 47.619 0.00 0.00 39.08 4.57
2092 3133 2.636830 GTCCTGGACTTGATGGACATG 58.363 52.381 19.53 0.00 45.87 3.21
2108 3149 3.073650 AGAGAATGTTGCCAGAAAGTCCT 59.926 43.478 0.00 0.00 0.00 3.85
2109 3150 3.416156 AGAGAATGTTGCCAGAAAGTCC 58.584 45.455 0.00 0.00 0.00 3.85
2110 3151 4.067896 TGAGAGAATGTTGCCAGAAAGTC 58.932 43.478 0.00 0.00 0.00 3.01
2111 3152 3.817647 GTGAGAGAATGTTGCCAGAAAGT 59.182 43.478 0.00 0.00 0.00 2.66
2113 3154 3.819368 TGTGAGAGAATGTTGCCAGAAA 58.181 40.909 0.00 0.00 0.00 2.52
2114 3155 3.490439 TGTGAGAGAATGTTGCCAGAA 57.510 42.857 0.00 0.00 0.00 3.02
2115 3156 3.708403 ATGTGAGAGAATGTTGCCAGA 57.292 42.857 0.00 0.00 0.00 3.86
2116 3157 4.778534 AAATGTGAGAGAATGTTGCCAG 57.221 40.909 0.00 0.00 0.00 4.85
2117 3158 4.022068 GGAAAATGTGAGAGAATGTTGCCA 60.022 41.667 0.00 0.00 0.00 4.92
2118 3159 4.022068 TGGAAAATGTGAGAGAATGTTGCC 60.022 41.667 0.00 0.00 0.00 4.52
2119 3160 5.125100 TGGAAAATGTGAGAGAATGTTGC 57.875 39.130 0.00 0.00 0.00 4.17
2120 3161 8.298854 TGTTATGGAAAATGTGAGAGAATGTTG 58.701 33.333 0.00 0.00 0.00 3.33
2121 3162 8.408043 TGTTATGGAAAATGTGAGAGAATGTT 57.592 30.769 0.00 0.00 0.00 2.71
2122 3163 8.408043 TTGTTATGGAAAATGTGAGAGAATGT 57.592 30.769 0.00 0.00 0.00 2.71
2134 3175 9.247861 GCCTCCTGATATATTGTTATGGAAAAT 57.752 33.333 0.00 0.00 0.00 1.82
2135 3176 8.224025 TGCCTCCTGATATATTGTTATGGAAAA 58.776 33.333 0.00 0.00 0.00 2.29
2136 3177 7.754624 TGCCTCCTGATATATTGTTATGGAAA 58.245 34.615 0.00 0.00 0.00 3.13
2137 3178 7.328404 TGCCTCCTGATATATTGTTATGGAA 57.672 36.000 0.00 0.00 0.00 3.53
2138 3179 6.950860 TGCCTCCTGATATATTGTTATGGA 57.049 37.500 0.00 0.00 0.00 3.41
2139 3180 6.481313 CGATGCCTCCTGATATATTGTTATGG 59.519 42.308 0.00 0.00 0.00 2.74
2140 3181 6.018425 GCGATGCCTCCTGATATATTGTTATG 60.018 42.308 0.00 0.00 0.00 1.90
2141 3182 6.051717 GCGATGCCTCCTGATATATTGTTAT 58.948 40.000 0.00 0.00 0.00 1.89
2142 3183 5.046663 TGCGATGCCTCCTGATATATTGTTA 60.047 40.000 0.00 0.00 0.00 2.41
2143 3184 4.256920 GCGATGCCTCCTGATATATTGTT 58.743 43.478 0.00 0.00 0.00 2.83
2144 3185 3.261643 TGCGATGCCTCCTGATATATTGT 59.738 43.478 0.00 0.00 0.00 2.71
2145 3186 3.865446 TGCGATGCCTCCTGATATATTG 58.135 45.455 0.00 0.00 0.00 1.90
2146 3187 3.771479 TCTGCGATGCCTCCTGATATATT 59.229 43.478 0.00 0.00 0.00 1.28
2147 3188 3.369175 TCTGCGATGCCTCCTGATATAT 58.631 45.455 0.00 0.00 0.00 0.86
2148 3189 2.807676 TCTGCGATGCCTCCTGATATA 58.192 47.619 0.00 0.00 0.00 0.86
2149 3190 1.637338 TCTGCGATGCCTCCTGATAT 58.363 50.000 0.00 0.00 0.00 1.63
2150 3191 1.413118 TTCTGCGATGCCTCCTGATA 58.587 50.000 0.00 0.00 0.00 2.15
2151 3192 0.763652 ATTCTGCGATGCCTCCTGAT 59.236 50.000 0.00 0.00 0.00 2.90
2152 3193 1.342496 CTATTCTGCGATGCCTCCTGA 59.658 52.381 0.00 0.00 0.00 3.86
2153 3194 1.793258 CTATTCTGCGATGCCTCCTG 58.207 55.000 0.00 0.00 0.00 3.86
2154 3195 0.034616 GCTATTCTGCGATGCCTCCT 59.965 55.000 0.00 0.00 0.00 3.69
2155 3196 0.034616 AGCTATTCTGCGATGCCTCC 59.965 55.000 0.00 0.00 38.13 4.30
2156 3197 1.530293 CAAGCTATTCTGCGATGCCTC 59.470 52.381 0.00 0.00 38.13 4.70
2162 3203 7.552458 TTATTTTCATCAAGCTATTCTGCGA 57.448 32.000 0.00 0.00 38.13 5.10
2241 3282 6.415280 CCTGTGAAGTAGTATTTTCGATCGAG 59.585 42.308 18.54 0.07 0.00 4.04
2242 3283 6.263344 CCTGTGAAGTAGTATTTTCGATCGA 58.737 40.000 15.15 15.15 0.00 3.59
2247 3288 3.306166 CGCCCTGTGAAGTAGTATTTTCG 59.694 47.826 0.00 0.00 0.00 3.46
2248 3289 4.251268 ACGCCCTGTGAAGTAGTATTTTC 58.749 43.478 0.00 0.00 0.00 2.29
2255 3296 0.818296 AGCTACGCCCTGTGAAGTAG 59.182 55.000 0.00 0.00 39.46 2.57
2256 3297 1.263356 AAGCTACGCCCTGTGAAGTA 58.737 50.000 0.00 0.00 0.00 2.24
2257 3298 0.396811 AAAGCTACGCCCTGTGAAGT 59.603 50.000 0.00 0.00 0.00 3.01
2258 3299 0.798776 CAAAGCTACGCCCTGTGAAG 59.201 55.000 0.00 0.00 0.00 3.02
2295 3336 9.189156 TGCTGAGCCTGTTTAATTATCTTTATT 57.811 29.630 0.23 0.00 0.00 1.40
2296 3337 8.624776 GTGCTGAGCCTGTTTAATTATCTTTAT 58.375 33.333 0.23 0.00 0.00 1.40
2297 3338 7.201609 CGTGCTGAGCCTGTTTAATTATCTTTA 60.202 37.037 0.23 0.00 0.00 1.85
2298 3339 6.403636 CGTGCTGAGCCTGTTTAATTATCTTT 60.404 38.462 0.23 0.00 0.00 2.52
2299 3340 5.065218 CGTGCTGAGCCTGTTTAATTATCTT 59.935 40.000 0.23 0.00 0.00 2.40
2300 3341 4.572389 CGTGCTGAGCCTGTTTAATTATCT 59.428 41.667 0.23 0.00 0.00 1.98
2301 3342 4.332819 ACGTGCTGAGCCTGTTTAATTATC 59.667 41.667 0.23 0.00 0.00 1.75
2302 3343 4.261801 ACGTGCTGAGCCTGTTTAATTAT 58.738 39.130 0.23 0.00 0.00 1.28
2303 3344 3.670625 ACGTGCTGAGCCTGTTTAATTA 58.329 40.909 0.23 0.00 0.00 1.40
2304 3345 2.504367 ACGTGCTGAGCCTGTTTAATT 58.496 42.857 0.23 0.00 0.00 1.40
2305 3346 2.185004 ACGTGCTGAGCCTGTTTAAT 57.815 45.000 0.23 0.00 0.00 1.40
2306 3347 1.961793 AACGTGCTGAGCCTGTTTAA 58.038 45.000 0.23 0.00 0.00 1.52
2307 3348 1.601903 CAAACGTGCTGAGCCTGTTTA 59.398 47.619 19.19 0.00 32.00 2.01
2308 3349 0.381801 CAAACGTGCTGAGCCTGTTT 59.618 50.000 15.49 15.49 33.34 2.83
2309 3350 2.024918 CAAACGTGCTGAGCCTGTT 58.975 52.632 0.23 3.55 0.00 3.16
2310 3351 3.736483 CAAACGTGCTGAGCCTGT 58.264 55.556 0.23 0.00 0.00 4.00
2320 3361 2.159627 GTCACCTAGAATGGCAAACGTG 59.840 50.000 0.00 0.00 0.00 4.49
2321 3362 2.423577 GTCACCTAGAATGGCAAACGT 58.576 47.619 0.00 0.00 0.00 3.99
2322 3363 1.393539 CGTCACCTAGAATGGCAAACG 59.606 52.381 0.00 0.00 0.00 3.60
2323 3364 1.737793 CCGTCACCTAGAATGGCAAAC 59.262 52.381 0.00 0.00 0.00 2.93
2324 3365 1.948611 GCCGTCACCTAGAATGGCAAA 60.949 52.381 14.52 0.00 45.05 3.68
2325 3366 0.392461 GCCGTCACCTAGAATGGCAA 60.392 55.000 14.52 0.00 45.05 4.52
2326 3367 1.220749 GCCGTCACCTAGAATGGCA 59.779 57.895 14.52 0.00 45.05 4.92
2327 3368 0.530870 GAGCCGTCACCTAGAATGGC 60.531 60.000 12.52 12.52 45.69 4.40
2328 3369 1.067821 GAGAGCCGTCACCTAGAATGG 59.932 57.143 0.00 0.00 0.00 3.16
2329 3370 1.067821 GGAGAGCCGTCACCTAGAATG 59.932 57.143 0.00 0.00 30.98 2.67
2330 3371 1.063567 AGGAGAGCCGTCACCTAGAAT 60.064 52.381 0.00 0.00 41.64 2.40
2331 3372 0.331954 AGGAGAGCCGTCACCTAGAA 59.668 55.000 0.00 0.00 41.64 2.10
2332 3373 0.331954 AAGGAGAGCCGTCACCTAGA 59.668 55.000 0.00 0.00 42.54 2.43
2333 3374 0.457851 CAAGGAGAGCCGTCACCTAG 59.542 60.000 0.00 0.00 42.54 3.02
2334 3375 0.251653 ACAAGGAGAGCCGTCACCTA 60.252 55.000 0.00 0.00 42.54 3.08
2335 3376 1.534235 ACAAGGAGAGCCGTCACCT 60.534 57.895 0.00 0.00 45.07 4.00
2336 3377 1.374758 CACAAGGAGAGCCGTCACC 60.375 63.158 0.00 0.00 39.96 4.02
2337 3378 0.249911 AACACAAGGAGAGCCGTCAC 60.250 55.000 0.00 0.00 39.96 3.67
2338 3379 0.033504 GAACACAAGGAGAGCCGTCA 59.966 55.000 0.00 0.00 39.96 4.35
2339 3380 0.033504 TGAACACAAGGAGAGCCGTC 59.966 55.000 0.00 0.00 39.96 4.79
2340 3381 0.249911 GTGAACACAAGGAGAGCCGT 60.250 55.000 0.00 0.00 39.96 5.68
2341 3382 0.249868 TGTGAACACAAGGAGAGCCG 60.250 55.000 5.11 0.00 38.56 5.52
2342 3383 1.230324 GTGTGAACACAAGGAGAGCC 58.770 55.000 9.24 0.00 45.75 4.70
2343 3384 0.861837 CGTGTGAACACAAGGAGAGC 59.138 55.000 13.63 0.00 46.75 4.09
2344 3385 0.861837 GCGTGTGAACACAAGGAGAG 59.138 55.000 18.65 5.63 46.75 3.20
2345 3386 0.874175 CGCGTGTGAACACAAGGAGA 60.874 55.000 18.65 0.00 46.75 3.71
2346 3387 1.151777 ACGCGTGTGAACACAAGGAG 61.152 55.000 12.93 13.33 46.75 3.69
2347 3388 0.741574 AACGCGTGTGAACACAAGGA 60.742 50.000 14.98 0.00 46.75 3.36
2348 3389 0.098025 AAACGCGTGTGAACACAAGG 59.902 50.000 14.98 11.29 46.75 3.61
2349 3390 1.889891 AAAACGCGTGTGAACACAAG 58.110 45.000 14.98 14.42 46.75 3.16
2350 3391 2.333389 AAAAACGCGTGTGAACACAA 57.667 40.000 14.98 0.00 46.75 3.33
2377 3418 8.962679 ACATTAAATCAATAGGAGCGGTAAAAA 58.037 29.630 0.00 0.00 0.00 1.94
2378 3419 8.514330 ACATTAAATCAATAGGAGCGGTAAAA 57.486 30.769 0.00 0.00 0.00 1.52
2379 3420 9.048446 GTACATTAAATCAATAGGAGCGGTAAA 57.952 33.333 0.00 0.00 0.00 2.01
2380 3421 8.205512 TGTACATTAAATCAATAGGAGCGGTAA 58.794 33.333 0.00 0.00 0.00 2.85
2381 3422 7.728148 TGTACATTAAATCAATAGGAGCGGTA 58.272 34.615 0.00 0.00 0.00 4.02
2382 3423 6.588204 TGTACATTAAATCAATAGGAGCGGT 58.412 36.000 0.00 0.00 0.00 5.68
2383 3424 7.307989 CCTTGTACATTAAATCAATAGGAGCGG 60.308 40.741 0.00 0.00 0.00 5.52
2384 3425 7.226720 ACCTTGTACATTAAATCAATAGGAGCG 59.773 37.037 9.35 0.00 0.00 5.03
2385 3426 8.451908 ACCTTGTACATTAAATCAATAGGAGC 57.548 34.615 9.35 0.00 0.00 4.70
2386 3427 9.838339 AGACCTTGTACATTAAATCAATAGGAG 57.162 33.333 9.35 0.00 0.00 3.69
2390 3431 9.256477 CGCTAGACCTTGTACATTAAATCAATA 57.744 33.333 0.00 0.00 0.00 1.90
2391 3432 7.226720 CCGCTAGACCTTGTACATTAAATCAAT 59.773 37.037 0.00 0.00 0.00 2.57
2392 3433 6.537301 CCGCTAGACCTTGTACATTAAATCAA 59.463 38.462 0.00 0.00 0.00 2.57
2393 3434 6.046593 CCGCTAGACCTTGTACATTAAATCA 58.953 40.000 0.00 0.00 0.00 2.57
2394 3435 6.278363 TCCGCTAGACCTTGTACATTAAATC 58.722 40.000 0.00 0.00 0.00 2.17
2395 3436 6.229936 TCCGCTAGACCTTGTACATTAAAT 57.770 37.500 0.00 0.00 0.00 1.40
2396 3437 5.664294 TCCGCTAGACCTTGTACATTAAA 57.336 39.130 0.00 0.00 0.00 1.52
2402 3443 3.521947 AACATCCGCTAGACCTTGTAC 57.478 47.619 0.00 0.00 0.00 2.90
2427 3468 6.097839 ACGGTAAATCAATAGGAGCAGTAAGA 59.902 38.462 0.00 0.00 0.00 2.10
2428 3469 6.281405 ACGGTAAATCAATAGGAGCAGTAAG 58.719 40.000 0.00 0.00 0.00 2.34
2443 3491 3.682858 TGCTGAGCTTTGTACGGTAAATC 59.317 43.478 5.83 0.00 0.00 2.17
2451 3499 3.665323 CGACATGTTGCTGAGCTTTGTAC 60.665 47.826 5.83 0.00 0.00 2.90
2460 3508 1.879380 CCCTTTTCGACATGTTGCTGA 59.121 47.619 8.34 0.00 0.00 4.26
2467 3515 2.879826 GGCAAATCCCTTTTCGACATG 58.120 47.619 0.00 0.00 0.00 3.21
2503 3551 1.993956 ATGCACCTGTGGTTGCTTTA 58.006 45.000 0.00 0.00 31.02 1.85
2504 3552 1.122227 AATGCACCTGTGGTTGCTTT 58.878 45.000 0.00 8.50 31.02 3.51
2505 3553 1.613437 GTAATGCACCTGTGGTTGCTT 59.387 47.619 0.00 4.33 31.02 3.91
2507 3555 0.958091 TGTAATGCACCTGTGGTTGC 59.042 50.000 0.00 0.00 31.02 4.17
2509 3557 2.487762 CGAATGTAATGCACCTGTGGTT 59.512 45.455 0.00 0.00 31.02 3.67
2515 3563 2.766263 TCTCCTCGAATGTAATGCACCT 59.234 45.455 0.00 0.00 0.00 4.00
2516 3564 2.866762 GTCTCCTCGAATGTAATGCACC 59.133 50.000 0.00 0.00 0.00 5.01
2517 3565 3.553511 CAGTCTCCTCGAATGTAATGCAC 59.446 47.826 0.00 0.00 33.24 4.57
2518 3566 3.447229 TCAGTCTCCTCGAATGTAATGCA 59.553 43.478 0.00 0.00 38.76 3.96
2530 3578 3.921021 CGTGTGTTTGTATCAGTCTCCTC 59.079 47.826 0.00 0.00 0.00 3.71
2533 3581 4.295870 TGACGTGTGTTTGTATCAGTCTC 58.704 43.478 0.00 0.00 0.00 3.36
2538 3586 4.326009 CGATGATGACGTGTGTTTGTATCA 59.674 41.667 0.00 0.00 0.00 2.15
2539 3587 4.779082 GCGATGATGACGTGTGTTTGTATC 60.779 45.833 0.00 0.00 0.00 2.24
2549 3597 0.789601 TTGTGTGCGATGATGACGTG 59.210 50.000 0.00 0.00 0.00 4.49
2553 3601 0.789601 CGTGTTGTGTGCGATGATGA 59.210 50.000 0.00 0.00 0.00 2.92
2556 3604 1.884926 TGCGTGTTGTGTGCGATGA 60.885 52.632 0.00 0.00 0.00 2.92
2559 3607 3.568743 GGTGCGTGTTGTGTGCGA 61.569 61.111 0.00 0.00 0.00 5.10
2572 3620 3.191371 CCTTTGTATCTTGTCTTGGGTGC 59.809 47.826 0.00 0.00 0.00 5.01
2598 3646 1.227645 GGTGCTGTGTCAGTGCTCA 60.228 57.895 0.00 0.00 33.43 4.26
2605 3653 4.248842 CGGTGGGGTGCTGTGTCA 62.249 66.667 0.00 0.00 0.00 3.58
2612 3660 2.798148 CTTGGTAGTCGGTGGGGTGC 62.798 65.000 0.00 0.00 0.00 5.01
2617 3665 1.821216 ATTTGCTTGGTAGTCGGTGG 58.179 50.000 0.00 0.00 0.00 4.61
2631 3679 2.677836 TCTCCGCACATCTGTAATTTGC 59.322 45.455 0.00 0.00 0.00 3.68
2639 3687 0.803768 CGGTCTTCTCCGCACATCTG 60.804 60.000 0.00 0.00 43.96 2.90
2671 3719 3.070302 GGATTCTCATGGTGGAGGTCTAC 59.930 52.174 0.00 0.00 35.58 2.59
2682 3730 4.212143 TCTCTGTTGTGGATTCTCATGG 57.788 45.455 0.00 0.00 0.00 3.66
2702 3750 1.352156 GCCGTTGTCCGTCTCACATC 61.352 60.000 0.00 0.00 33.66 3.06
2704 3752 2.028484 GCCGTTGTCCGTCTCACA 59.972 61.111 0.00 0.00 33.66 3.58
2720 3768 1.135575 CATTTGGAGTTCTGGCTTCGC 60.136 52.381 0.00 0.00 0.00 4.70
2722 3770 1.821136 CCCATTTGGAGTTCTGGCTTC 59.179 52.381 0.00 0.00 37.39 3.86
2729 3777 2.863809 AGTGTGTCCCATTTGGAGTTC 58.136 47.619 0.00 0.00 46.38 3.01
2730 3778 3.222603 GAAGTGTGTCCCATTTGGAGTT 58.777 45.455 0.00 0.00 46.38 3.01
2739 3787 3.164977 TGGGCGAAGTGTGTCCCA 61.165 61.111 0.00 0.00 45.87 4.37
2740 3788 2.668550 GTGGGCGAAGTGTGTCCC 60.669 66.667 0.00 0.00 39.22 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.