Multiple sequence alignment - TraesCS5A01G470100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G470100 chr5A 100.000 2854 0 0 1 2854 647015495 647012642 0.000000e+00 5271
1 TraesCS5A01G470100 chr5A 89.087 449 49 0 2406 2854 647004616 647004168 2.480000e-155 558
2 TraesCS5A01G470100 chr5A 89.908 327 25 5 1003 1321 647107598 647107272 5.690000e-112 414
3 TraesCS5A01G470100 chr5A 89.577 307 28 2 2017 2320 647004942 647004637 1.240000e-103 387
4 TraesCS5A01G470100 chr5D 89.114 2168 160 46 714 2854 520069724 520067606 0.000000e+00 2627
5 TraesCS5A01G470100 chr5D 86.412 839 91 19 2017 2854 520061695 520060879 0.000000e+00 896
6 TraesCS5A01G470100 chr5B 87.648 842 85 14 2016 2854 655010737 655009912 0.000000e+00 961
7 TraesCS5A01G470100 chr5B 88.594 640 60 8 1006 1639 655013908 655013276 0.000000e+00 765
8 TraesCS5A01G470100 chr5B 76.753 271 48 8 60 316 592819009 592819278 1.380000e-28 137
9 TraesCS5A01G470100 chr5B 74.157 356 68 16 1073 1410 655022899 655022550 2.990000e-25 126
10 TraesCS5A01G470100 chr7B 80.377 530 58 23 234 722 730727046 730727570 7.520000e-96 361
11 TraesCS5A01G470100 chr7B 82.028 434 59 8 64 479 730730094 730730526 4.520000e-93 351
12 TraesCS5A01G470100 chr7B 81.356 413 57 11 317 710 511311941 511311530 4.590000e-83 318
13 TraesCS5A01G470100 chr1B 83.000 400 62 4 322 717 26393954 26393557 9.720000e-95 357
14 TraesCS5A01G470100 chr7D 81.356 413 57 9 317 710 484429139 484428728 4.590000e-83 318
15 TraesCS5A01G470100 chr7D 81.265 411 59 10 317 710 565650175 565649766 1.650000e-82 316
16 TraesCS5A01G470100 chr3D 81.553 412 52 12 317 707 104794686 104795094 4.590000e-83 318
17 TraesCS5A01G470100 chr2A 86.022 279 36 3 317 593 60098562 60098285 2.150000e-76 296
18 TraesCS5A01G470100 chr2A 90.909 165 12 1 556 717 60098273 60098109 4.790000e-53 219
19 TraesCS5A01G470100 chr3A 80.193 414 59 12 317 710 550646392 550645982 3.600000e-74 289
20 TraesCS5A01G470100 chr2B 76.685 356 61 18 1 341 779907383 779907035 8.130000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G470100 chr5A 647012642 647015495 2853 True 5271.0 5271 100.0000 1 2854 1 chr5A.!!$R1 2853
1 TraesCS5A01G470100 chr5A 647004168 647004942 774 True 472.5 558 89.3320 2017 2854 2 chr5A.!!$R3 837
2 TraesCS5A01G470100 chr5D 520067606 520069724 2118 True 2627.0 2627 89.1140 714 2854 1 chr5D.!!$R2 2140
3 TraesCS5A01G470100 chr5D 520060879 520061695 816 True 896.0 896 86.4120 2017 2854 1 chr5D.!!$R1 837
4 TraesCS5A01G470100 chr5B 655009912 655013908 3996 True 863.0 961 88.1210 1006 2854 2 chr5B.!!$R2 1848
5 TraesCS5A01G470100 chr7B 730727046 730730526 3480 False 356.0 361 81.2025 64 722 2 chr7B.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.030638 GCATGTCCGTTTGCAACTGT 59.969 50.0 0.0 0.0 38.72 3.55 F
45 46 0.034059 CAACTGTCGGCTCCTTGACT 59.966 55.0 0.0 0.0 36.10 3.41 F
47 48 0.034059 ACTGTCGGCTCCTTGACTTG 59.966 55.0 0.0 0.0 36.10 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1107 0.108992 AGAACGCCATTGCAGCATTG 60.109 50.0 9.91 9.91 37.32 2.82 R
1053 1108 0.171903 GAGAACGCCATTGCAGCATT 59.828 50.0 0.00 0.00 37.32 3.56 R
1940 5458 0.254178 ACATAGTGCAAGCAGAGGGG 59.746 55.0 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.001248 CCATGTGGCATGTCCGTT 57.999 55.556 0.00 0.00 37.80 4.44
24 25 2.266070 CCATGTGGCATGTCCGTTT 58.734 52.632 0.00 0.00 37.80 3.60
25 26 0.109179 CCATGTGGCATGTCCGTTTG 60.109 55.000 0.00 0.00 37.80 2.93
26 27 0.733566 CATGTGGCATGTCCGTTTGC 60.734 55.000 0.00 0.00 37.80 3.68
27 28 1.177895 ATGTGGCATGTCCGTTTGCA 61.178 50.000 0.00 0.00 40.66 4.08
28 29 1.361993 GTGGCATGTCCGTTTGCAA 59.638 52.632 0.00 0.00 40.66 4.08
29 30 0.939106 GTGGCATGTCCGTTTGCAAC 60.939 55.000 0.00 0.00 40.66 4.17
30 31 1.106351 TGGCATGTCCGTTTGCAACT 61.106 50.000 0.00 0.00 40.66 3.16
31 32 0.664166 GGCATGTCCGTTTGCAACTG 60.664 55.000 0.00 0.00 40.66 3.16
32 33 0.030638 GCATGTCCGTTTGCAACTGT 59.969 50.000 0.00 0.00 38.72 3.55
33 34 1.925946 GCATGTCCGTTTGCAACTGTC 60.926 52.381 0.00 0.00 38.72 3.51
34 35 0.586319 ATGTCCGTTTGCAACTGTCG 59.414 50.000 0.00 2.05 0.00 4.35
35 36 1.278637 GTCCGTTTGCAACTGTCGG 59.721 57.895 18.92 18.92 42.12 4.79
36 37 2.051345 CCGTTTGCAACTGTCGGC 60.051 61.111 15.06 0.00 35.01 5.54
37 38 2.542907 CCGTTTGCAACTGTCGGCT 61.543 57.895 15.06 0.00 35.01 5.52
38 39 1.082756 CGTTTGCAACTGTCGGCTC 60.083 57.895 0.00 0.00 0.00 4.70
39 40 1.282875 GTTTGCAACTGTCGGCTCC 59.717 57.895 0.00 0.00 0.00 4.70
40 41 1.148273 TTTGCAACTGTCGGCTCCT 59.852 52.632 0.00 0.00 0.00 3.69
41 42 0.465460 TTTGCAACTGTCGGCTCCTT 60.465 50.000 0.00 0.00 0.00 3.36
42 43 1.165907 TTGCAACTGTCGGCTCCTTG 61.166 55.000 0.00 0.00 0.00 3.61
43 44 1.301716 GCAACTGTCGGCTCCTTGA 60.302 57.895 0.00 0.00 0.00 3.02
44 45 1.569479 GCAACTGTCGGCTCCTTGAC 61.569 60.000 0.00 0.00 35.67 3.18
45 46 0.034059 CAACTGTCGGCTCCTTGACT 59.966 55.000 0.00 0.00 36.10 3.41
46 47 0.759346 AACTGTCGGCTCCTTGACTT 59.241 50.000 0.00 0.00 36.10 3.01
47 48 0.034059 ACTGTCGGCTCCTTGACTTG 59.966 55.000 0.00 0.00 36.10 3.16
48 49 1.294659 CTGTCGGCTCCTTGACTTGC 61.295 60.000 0.00 0.00 36.10 4.01
49 50 2.035442 GTCGGCTCCTTGACTTGCC 61.035 63.158 0.00 0.00 41.76 4.52
51 52 2.032681 GGCTCCTTGACTTGCCGT 59.967 61.111 0.00 0.00 35.79 5.68
52 53 1.600916 GGCTCCTTGACTTGCCGTT 60.601 57.895 0.00 0.00 35.79 4.44
53 54 0.321298 GGCTCCTTGACTTGCCGTTA 60.321 55.000 0.00 0.00 35.79 3.18
54 55 1.679032 GGCTCCTTGACTTGCCGTTAT 60.679 52.381 0.00 0.00 35.79 1.89
55 56 1.666189 GCTCCTTGACTTGCCGTTATC 59.334 52.381 0.00 0.00 0.00 1.75
56 57 2.678190 GCTCCTTGACTTGCCGTTATCT 60.678 50.000 0.00 0.00 0.00 1.98
57 58 3.430374 GCTCCTTGACTTGCCGTTATCTA 60.430 47.826 0.00 0.00 0.00 1.98
58 59 4.740934 GCTCCTTGACTTGCCGTTATCTAT 60.741 45.833 0.00 0.00 0.00 1.98
59 60 5.509163 GCTCCTTGACTTGCCGTTATCTATA 60.509 44.000 0.00 0.00 0.00 1.31
60 61 5.839621 TCCTTGACTTGCCGTTATCTATAC 58.160 41.667 0.00 0.00 0.00 1.47
61 62 5.597182 TCCTTGACTTGCCGTTATCTATACT 59.403 40.000 0.00 0.00 0.00 2.12
62 63 5.692204 CCTTGACTTGCCGTTATCTATACTG 59.308 44.000 0.00 0.00 0.00 2.74
63 64 4.617959 TGACTTGCCGTTATCTATACTGC 58.382 43.478 0.00 0.00 0.00 4.40
64 65 4.341235 TGACTTGCCGTTATCTATACTGCT 59.659 41.667 0.00 0.00 0.00 4.24
65 66 4.872664 ACTTGCCGTTATCTATACTGCTC 58.127 43.478 0.00 0.00 0.00 4.26
66 67 3.554259 TGCCGTTATCTATACTGCTCG 57.446 47.619 0.00 0.00 0.00 5.03
67 68 3.143728 TGCCGTTATCTATACTGCTCGA 58.856 45.455 0.00 0.00 0.00 4.04
68 69 3.188667 TGCCGTTATCTATACTGCTCGAG 59.811 47.826 8.45 8.45 0.00 4.04
69 70 3.436015 GCCGTTATCTATACTGCTCGAGA 59.564 47.826 18.75 0.02 0.00 4.04
70 71 4.083431 GCCGTTATCTATACTGCTCGAGAA 60.083 45.833 18.75 4.16 0.00 2.87
71 72 5.562307 GCCGTTATCTATACTGCTCGAGAAA 60.562 44.000 18.75 1.85 0.00 2.52
72 73 5.852229 CCGTTATCTATACTGCTCGAGAAAC 59.148 44.000 18.75 0.00 0.00 2.78
73 74 5.852229 CGTTATCTATACTGCTCGAGAAACC 59.148 44.000 18.75 0.00 0.00 3.27
74 75 6.512903 CGTTATCTATACTGCTCGAGAAACCA 60.513 42.308 18.75 3.18 0.00 3.67
75 76 4.634184 TCTATACTGCTCGAGAAACCAC 57.366 45.455 18.75 0.00 0.00 4.16
76 77 4.014406 TCTATACTGCTCGAGAAACCACA 58.986 43.478 18.75 1.95 0.00 4.17
77 78 3.895232 ATACTGCTCGAGAAACCACAT 57.105 42.857 18.75 0.00 0.00 3.21
78 79 1.800805 ACTGCTCGAGAAACCACATG 58.199 50.000 18.75 0.00 0.00 3.21
79 80 1.070758 ACTGCTCGAGAAACCACATGT 59.929 47.619 18.75 0.00 0.00 3.21
80 81 1.728971 CTGCTCGAGAAACCACATGTC 59.271 52.381 18.75 0.00 0.00 3.06
81 82 1.069978 TGCTCGAGAAACCACATGTCA 59.930 47.619 18.75 0.00 0.00 3.58
82 83 1.461127 GCTCGAGAAACCACATGTCAC 59.539 52.381 18.75 0.00 0.00 3.67
83 84 2.069273 CTCGAGAAACCACATGTCACC 58.931 52.381 6.58 0.00 0.00 4.02
84 85 0.790207 CGAGAAACCACATGTCACCG 59.210 55.000 0.00 0.00 0.00 4.94
85 86 1.604438 CGAGAAACCACATGTCACCGA 60.604 52.381 0.00 0.00 0.00 4.69
86 87 2.489971 GAGAAACCACATGTCACCGAA 58.510 47.619 0.00 0.00 0.00 4.30
87 88 2.875933 GAGAAACCACATGTCACCGAAA 59.124 45.455 0.00 0.00 0.00 3.46
88 89 2.616842 AGAAACCACATGTCACCGAAAC 59.383 45.455 0.00 0.00 0.00 2.78
89 90 2.045561 AACCACATGTCACCGAAACA 57.954 45.000 0.00 0.00 0.00 2.83
90 91 2.270352 ACCACATGTCACCGAAACAT 57.730 45.000 0.00 0.00 37.85 2.71
91 92 2.582052 ACCACATGTCACCGAAACATT 58.418 42.857 0.00 0.00 35.19 2.71
92 93 2.552315 ACCACATGTCACCGAAACATTC 59.448 45.455 0.00 0.00 35.19 2.67
93 94 2.813754 CCACATGTCACCGAAACATTCT 59.186 45.455 0.00 0.00 35.19 2.40
94 95 3.365264 CCACATGTCACCGAAACATTCTG 60.365 47.826 0.00 0.00 35.19 3.02
100 101 2.367241 TCACCGAAACATTCTGACCTGA 59.633 45.455 0.00 0.00 0.00 3.86
108 109 2.639347 ACATTCTGACCTGACATGTGGA 59.361 45.455 1.15 0.00 0.00 4.02
109 110 3.265221 ACATTCTGACCTGACATGTGGAT 59.735 43.478 1.15 0.00 0.00 3.41
112 113 0.536724 TGACCTGACATGTGGATCCG 59.463 55.000 1.15 0.00 0.00 4.18
113 114 0.537188 GACCTGACATGTGGATCCGT 59.463 55.000 1.15 0.00 0.00 4.69
114 115 0.984230 ACCTGACATGTGGATCCGTT 59.016 50.000 1.15 0.00 0.00 4.44
115 116 2.167693 GACCTGACATGTGGATCCGTTA 59.832 50.000 1.15 0.00 0.00 3.18
116 117 2.168521 ACCTGACATGTGGATCCGTTAG 59.831 50.000 1.15 4.89 0.00 2.34
117 118 2.430694 CCTGACATGTGGATCCGTTAGA 59.569 50.000 1.15 0.00 0.00 2.10
118 119 3.448686 CTGACATGTGGATCCGTTAGAC 58.551 50.000 1.15 0.00 0.00 2.59
119 120 2.167693 TGACATGTGGATCCGTTAGACC 59.832 50.000 1.15 0.00 0.00 3.85
120 121 1.485066 ACATGTGGATCCGTTAGACCC 59.515 52.381 7.39 0.00 0.00 4.46
121 122 1.484653 CATGTGGATCCGTTAGACCCA 59.515 52.381 7.39 0.00 0.00 4.51
122 123 0.899720 TGTGGATCCGTTAGACCCAC 59.100 55.000 7.39 0.00 45.47 4.61
123 124 1.192428 GTGGATCCGTTAGACCCACT 58.808 55.000 7.39 0.00 42.82 4.00
124 125 1.553704 GTGGATCCGTTAGACCCACTT 59.446 52.381 7.39 0.00 42.82 3.16
125 126 1.553248 TGGATCCGTTAGACCCACTTG 59.447 52.381 7.39 0.00 0.00 3.16
126 127 1.553704 GGATCCGTTAGACCCACTTGT 59.446 52.381 0.00 0.00 0.00 3.16
127 128 2.418334 GGATCCGTTAGACCCACTTGTC 60.418 54.545 0.00 0.00 35.43 3.18
128 129 1.707106 TCCGTTAGACCCACTTGTCA 58.293 50.000 0.00 0.00 37.73 3.58
129 130 2.040939 TCCGTTAGACCCACTTGTCAA 58.959 47.619 0.00 0.00 37.73 3.18
130 131 2.635915 TCCGTTAGACCCACTTGTCAAT 59.364 45.455 0.00 0.00 37.73 2.57
131 132 2.742053 CCGTTAGACCCACTTGTCAATG 59.258 50.000 0.00 0.00 37.73 2.82
132 133 3.556213 CCGTTAGACCCACTTGTCAATGA 60.556 47.826 0.00 0.00 37.73 2.57
133 134 4.062293 CGTTAGACCCACTTGTCAATGAA 58.938 43.478 0.00 0.00 37.73 2.57
134 135 4.084013 CGTTAGACCCACTTGTCAATGAAC 60.084 45.833 0.00 0.00 37.73 3.18
135 136 3.576078 AGACCCACTTGTCAATGAACA 57.424 42.857 0.00 0.00 37.73 3.18
136 137 4.104383 AGACCCACTTGTCAATGAACAT 57.896 40.909 0.00 0.00 37.73 2.71
137 138 4.473444 AGACCCACTTGTCAATGAACATT 58.527 39.130 0.00 0.00 37.73 2.71
138 139 4.520492 AGACCCACTTGTCAATGAACATTC 59.480 41.667 0.00 0.00 37.73 2.67
139 140 4.214310 ACCCACTTGTCAATGAACATTCA 58.786 39.130 0.00 0.00 42.14 2.57
140 141 4.648762 ACCCACTTGTCAATGAACATTCAA 59.351 37.500 0.00 0.51 41.13 2.69
141 142 5.128499 ACCCACTTGTCAATGAACATTCAAA 59.872 36.000 0.00 0.00 41.13 2.69
142 143 6.183360 ACCCACTTGTCAATGAACATTCAAAT 60.183 34.615 0.00 0.00 41.13 2.32
143 144 6.707161 CCCACTTGTCAATGAACATTCAAATT 59.293 34.615 0.00 0.00 41.13 1.82
144 145 7.871973 CCCACTTGTCAATGAACATTCAAATTA 59.128 33.333 0.00 0.00 41.13 1.40
145 146 9.258826 CCACTTGTCAATGAACATTCAAATTAA 57.741 29.630 0.00 0.00 41.13 1.40
192 193 7.984422 ATATGGCATGTTTTCATTATCGAGA 57.016 32.000 10.98 0.00 38.64 4.04
193 194 5.739752 TGGCATGTTTTCATTATCGAGAG 57.260 39.130 0.00 0.00 38.64 3.20
194 195 4.035558 TGGCATGTTTTCATTATCGAGAGC 59.964 41.667 0.00 0.00 38.64 4.09
195 196 4.274459 GGCATGTTTTCATTATCGAGAGCT 59.726 41.667 0.00 0.00 38.64 4.09
196 197 5.466728 GGCATGTTTTCATTATCGAGAGCTA 59.533 40.000 0.00 0.00 38.64 3.32
197 198 6.148480 GGCATGTTTTCATTATCGAGAGCTAT 59.852 38.462 0.00 0.00 38.64 2.97
198 199 7.232994 GCATGTTTTCATTATCGAGAGCTATC 58.767 38.462 0.00 0.00 38.64 2.08
199 200 6.993175 TGTTTTCATTATCGAGAGCTATCG 57.007 37.500 24.26 24.26 44.07 2.92
200 201 5.920840 TGTTTTCATTATCGAGAGCTATCGG 59.079 40.000 28.63 13.54 42.93 4.18
201 202 4.703645 TTCATTATCGAGAGCTATCGGG 57.296 45.455 28.63 14.10 42.93 5.14
202 203 3.687125 TCATTATCGAGAGCTATCGGGT 58.313 45.455 28.63 19.89 42.93 5.28
203 204 4.840271 TCATTATCGAGAGCTATCGGGTA 58.160 43.478 28.63 18.94 42.93 3.69
204 205 4.634883 TCATTATCGAGAGCTATCGGGTAC 59.365 45.833 28.63 0.00 42.93 3.34
217 218 2.766651 GGTACCCTCGGCATCCCA 60.767 66.667 0.00 0.00 0.00 4.37
218 219 2.147387 GGTACCCTCGGCATCCCAT 61.147 63.158 0.00 0.00 0.00 4.00
219 220 1.371558 GTACCCTCGGCATCCCATC 59.628 63.158 0.00 0.00 0.00 3.51
220 221 2.207229 TACCCTCGGCATCCCATCG 61.207 63.158 0.00 0.00 0.00 3.84
221 222 2.939760 TACCCTCGGCATCCCATCGT 62.940 60.000 0.00 0.00 0.00 3.73
222 223 2.505982 CCTCGGCATCCCATCGTT 59.494 61.111 0.00 0.00 0.00 3.85
223 224 1.889105 CCTCGGCATCCCATCGTTG 60.889 63.158 0.00 0.00 0.00 4.10
224 225 1.143838 CTCGGCATCCCATCGTTGA 59.856 57.895 0.00 0.00 0.00 3.18
225 226 1.153449 TCGGCATCCCATCGTTGAC 60.153 57.895 0.00 0.00 0.00 3.18
226 227 1.153369 CGGCATCCCATCGTTGACT 60.153 57.895 0.00 0.00 0.00 3.41
227 228 1.431488 CGGCATCCCATCGTTGACTG 61.431 60.000 0.00 0.00 0.00 3.51
228 229 0.107703 GGCATCCCATCGTTGACTGA 60.108 55.000 0.00 0.00 0.00 3.41
229 230 1.678728 GGCATCCCATCGTTGACTGAA 60.679 52.381 0.00 0.00 0.00 3.02
230 231 2.083774 GCATCCCATCGTTGACTGAAA 58.916 47.619 0.00 0.00 0.00 2.69
231 232 2.159517 GCATCCCATCGTTGACTGAAAC 60.160 50.000 0.00 0.00 0.00 2.78
240 241 3.998522 CGTTGACTGAAACGTTTGAACT 58.001 40.909 20.10 0.00 46.02 3.01
241 242 4.399978 CGTTGACTGAAACGTTTGAACTT 58.600 39.130 20.10 0.00 46.02 2.66
242 243 4.259734 CGTTGACTGAAACGTTTGAACTTG 59.740 41.667 20.10 0.16 46.02 3.16
243 244 4.349663 TGACTGAAACGTTTGAACTTGG 57.650 40.909 20.10 0.00 0.00 3.61
244 245 3.105937 GACTGAAACGTTTGAACTTGGC 58.894 45.455 20.10 1.48 0.00 4.52
245 246 2.108700 CTGAAACGTTTGAACTTGGCG 58.891 47.619 20.10 0.00 0.00 5.69
246 247 1.202200 TGAAACGTTTGAACTTGGCGG 60.202 47.619 20.10 0.00 0.00 6.13
247 248 0.101579 AAACGTTTGAACTTGGCGGG 59.898 50.000 13.81 0.00 0.00 6.13
248 249 1.033202 AACGTTTGAACTTGGCGGGT 61.033 50.000 0.00 0.00 0.00 5.28
249 250 1.008995 CGTTTGAACTTGGCGGGTG 60.009 57.895 0.00 0.00 0.00 4.61
250 251 1.362355 GTTTGAACTTGGCGGGTGG 59.638 57.895 0.00 0.00 0.00 4.61
251 252 1.830408 TTTGAACTTGGCGGGTGGG 60.830 57.895 0.00 0.00 0.00 4.61
252 253 2.285889 TTTGAACTTGGCGGGTGGGA 62.286 55.000 0.00 0.00 0.00 4.37
255 256 3.622060 AACTTGGCGGGTGGGATCG 62.622 63.158 0.00 0.00 0.00 3.69
268 269 1.819632 GGATCGTGTCCCACATGGC 60.820 63.158 0.00 0.00 41.50 4.40
284 285 2.572209 TGGCAGTGGTACTTTTACCC 57.428 50.000 0.00 0.00 46.80 3.69
287 288 2.039348 GGCAGTGGTACTTTTACCCAGA 59.961 50.000 0.00 0.00 46.80 3.86
288 289 3.072211 GCAGTGGTACTTTTACCCAGAC 58.928 50.000 0.00 0.00 46.80 3.51
297 298 0.605319 TTTACCCAGACTTGCCAGCG 60.605 55.000 0.00 0.00 0.00 5.18
301 302 3.485431 CAGACTTGCCAGCGCTCG 61.485 66.667 7.13 0.38 35.36 5.03
320 334 0.598065 GGAAAAGAATGGCACGTGCT 59.402 50.000 36.84 20.42 41.70 4.40
328 342 3.044305 GGCACGTGCTCAGGTGAC 61.044 66.667 36.84 16.30 46.69 3.67
337 351 0.609406 GCTCAGGTGACCCCTTTTCC 60.609 60.000 0.00 0.00 42.73 3.13
341 355 1.674651 GGTGACCCCTTTTCCGAGC 60.675 63.158 0.00 0.00 0.00 5.03
343 357 2.346365 GACCCCTTTTCCGAGCGT 59.654 61.111 0.00 0.00 0.00 5.07
347 361 2.358737 CCTTTTCCGAGCGTGCCT 60.359 61.111 0.00 0.00 0.00 4.75
350 364 1.355066 CTTTTCCGAGCGTGCCTCTC 61.355 60.000 0.00 0.00 38.49 3.20
358 372 1.014564 AGCGTGCCTCTCGTTAAAGC 61.015 55.000 0.00 0.00 0.00 3.51
359 373 1.014564 GCGTGCCTCTCGTTAAAGCT 61.015 55.000 0.00 0.00 0.00 3.74
370 384 7.481642 CCTCTCGTTAAAGCTAGTATTTCTGA 58.518 38.462 0.00 0.00 0.00 3.27
373 387 9.170734 TCTCGTTAAAGCTAGTATTTCTGAGTA 57.829 33.333 0.00 0.00 0.00 2.59
375 389 9.947669 TCGTTAAAGCTAGTATTTCTGAGTATC 57.052 33.333 0.00 0.00 0.00 2.24
376 390 8.893884 CGTTAAAGCTAGTATTTCTGAGTATCG 58.106 37.037 0.00 0.00 38.61 2.92
382 396 5.351233 AGTATTTCTGAGTATCGCTCTCG 57.649 43.478 0.00 0.00 44.41 4.04
388 402 3.003793 TCTGAGTATCGCTCTCGGAAATG 59.996 47.826 9.30 0.00 42.18 2.32
393 407 0.601057 TCGCTCTCGGAAATGTGTCA 59.399 50.000 0.00 0.00 36.13 3.58
396 410 2.350522 GCTCTCGGAAATGTGTCACAT 58.649 47.619 12.87 12.87 41.31 3.21
413 427 5.091431 GTCACATTGCTTCTATTGTCAAGC 58.909 41.667 0.00 0.00 44.55 4.01
438 452 6.480763 TGTTTCTTATCTAATCCCTGCAACA 58.519 36.000 0.00 0.00 0.00 3.33
442 456 6.957631 TCTTATCTAATCCCTGCAACAGAAA 58.042 36.000 0.00 0.00 32.44 2.52
447 461 4.751767 AATCCCTGCAACAGAAAACAAA 57.248 36.364 0.00 0.00 32.44 2.83
510 524 6.834969 TGACATCATATCAAATGAATGTGGGT 59.165 34.615 3.80 3.15 0.00 4.51
513 527 4.341806 TCATATCAAATGAATGTGGGTGCC 59.658 41.667 0.00 0.00 0.00 5.01
519 533 1.453928 GAATGTGGGTGCCCCTAGC 60.454 63.158 11.10 3.41 45.70 3.42
536 550 3.708631 CCTAGCTCCTCAGAAATTCCTCA 59.291 47.826 0.00 0.00 0.00 3.86
560 574 4.945543 AGCACATCACACACATATTCACAT 59.054 37.500 0.00 0.00 0.00 3.21
601 640 7.741027 AGTTCACATAGGCTAATGATTCATG 57.259 36.000 11.38 1.16 0.00 3.07
617 656 5.648960 TGATTCATGCAAGTTCATAGAGCAA 59.351 36.000 0.00 0.00 38.85 3.91
655 695 4.024133 GCACATCACACACAAGTTCACATA 60.024 41.667 0.00 0.00 0.00 2.29
717 757 6.584056 GCAAAACACATGCAAATTCTAAGTC 58.416 36.000 0.00 0.00 43.29 3.01
726 766 5.984725 TGCAAATTCTAAGTCTTATCCGGA 58.015 37.500 6.61 6.61 0.00 5.14
757 799 4.726583 AGGAACATCATCTCATTCCCATG 58.273 43.478 0.00 0.00 41.39 3.66
759 801 4.467769 GAACATCATCTCATTCCCATGGT 58.532 43.478 11.73 0.00 0.00 3.55
815 857 0.874390 GAAATCAGACAACCAGCGCA 59.126 50.000 11.47 0.00 0.00 6.09
820 862 1.893808 AGACAACCAGCGCACAAGG 60.894 57.895 11.47 8.53 0.00 3.61
832 874 2.043625 CACAAGGTGTGCATGCCTT 58.956 52.632 16.68 16.13 41.89 4.35
835 877 1.152483 AAGGTGTGCATGCCTTGGT 60.152 52.632 16.68 0.00 42.90 3.67
836 878 0.760189 AAGGTGTGCATGCCTTGGTT 60.760 50.000 16.68 0.21 42.90 3.67
837 879 0.112218 AGGTGTGCATGCCTTGGTTA 59.888 50.000 16.68 0.00 0.00 2.85
839 881 1.533625 GTGTGCATGCCTTGGTTAGA 58.466 50.000 16.68 0.00 0.00 2.10
840 882 2.094675 GTGTGCATGCCTTGGTTAGAT 58.905 47.619 16.68 0.00 0.00 1.98
872 921 0.822121 GTTGAAGCCCCGTCTTGGTT 60.822 55.000 0.00 0.00 35.15 3.67
873 922 0.821711 TTGAAGCCCCGTCTTGGTTG 60.822 55.000 0.00 0.00 35.15 3.77
874 923 1.072505 GAAGCCCCGTCTTGGTTGA 59.927 57.895 0.00 0.00 35.15 3.18
875 924 0.955919 GAAGCCCCGTCTTGGTTGAG 60.956 60.000 0.00 0.00 35.15 3.02
876 925 1.705997 AAGCCCCGTCTTGGTTGAGT 61.706 55.000 0.00 0.00 35.15 3.41
877 926 1.671379 GCCCCGTCTTGGTTGAGTC 60.671 63.158 0.00 0.00 35.15 3.36
878 927 1.374252 CCCCGTCTTGGTTGAGTCG 60.374 63.158 0.00 0.00 35.15 4.18
879 928 1.663739 CCCGTCTTGGTTGAGTCGA 59.336 57.895 0.00 0.00 35.15 4.20
880 929 0.666577 CCCGTCTTGGTTGAGTCGAC 60.667 60.000 7.70 7.70 35.15 4.20
886 935 2.095212 TCTTGGTTGAGTCGACGAGATG 60.095 50.000 10.46 0.00 0.00 2.90
887 936 1.530323 TGGTTGAGTCGACGAGATGA 58.470 50.000 10.46 0.00 0.00 2.92
888 937 2.092323 TGGTTGAGTCGACGAGATGAT 58.908 47.619 10.46 0.00 0.00 2.45
889 938 3.275999 TGGTTGAGTCGACGAGATGATA 58.724 45.455 10.46 0.00 0.00 2.15
890 939 3.883489 TGGTTGAGTCGACGAGATGATAT 59.117 43.478 10.46 0.00 0.00 1.63
892 941 5.705905 TGGTTGAGTCGACGAGATGATATAT 59.294 40.000 10.46 0.00 0.00 0.86
893 942 6.877322 TGGTTGAGTCGACGAGATGATATATA 59.123 38.462 10.46 0.00 0.00 0.86
895 944 6.591313 TGAGTCGACGAGATGATATATAGC 57.409 41.667 10.46 0.00 0.00 2.97
896 945 5.524281 TGAGTCGACGAGATGATATATAGCC 59.476 44.000 10.46 0.00 0.00 3.93
897 946 4.817464 AGTCGACGAGATGATATATAGCCC 59.183 45.833 10.46 0.00 0.00 5.19
898 947 4.817464 GTCGACGAGATGATATATAGCCCT 59.183 45.833 0.00 0.00 0.00 5.19
899 948 4.816925 TCGACGAGATGATATATAGCCCTG 59.183 45.833 0.00 0.00 0.00 4.45
900 949 4.576873 CGACGAGATGATATATAGCCCTGT 59.423 45.833 0.00 0.00 0.00 4.00
901 950 5.758784 CGACGAGATGATATATAGCCCTGTA 59.241 44.000 0.00 0.00 0.00 2.74
902 951 6.073494 CGACGAGATGATATATAGCCCTGTAG 60.073 46.154 0.00 0.00 0.00 2.74
903 952 5.533154 ACGAGATGATATATAGCCCTGTAGC 59.467 44.000 0.00 0.00 0.00 3.58
905 954 6.072728 CGAGATGATATATAGCCCTGTAGCTC 60.073 46.154 0.00 0.00 43.67 4.09
906 955 6.074648 AGATGATATATAGCCCTGTAGCTCC 58.925 44.000 0.00 0.00 43.67 4.70
907 956 4.207955 TGATATATAGCCCTGTAGCTCCG 58.792 47.826 0.00 0.00 43.67 4.63
908 957 1.187087 ATATAGCCCTGTAGCTCCGC 58.813 55.000 0.00 0.00 43.67 5.54
909 958 1.241990 TATAGCCCTGTAGCTCCGCG 61.242 60.000 0.00 0.00 43.67 6.46
910 959 3.874501 TATAGCCCTGTAGCTCCGCGT 62.875 57.143 4.92 0.00 43.67 6.01
911 960 4.452733 GCCCTGTAGCTCCGCGTT 62.453 66.667 4.92 0.00 0.00 4.84
912 961 2.202756 CCCTGTAGCTCCGCGTTC 60.203 66.667 4.92 0.00 0.00 3.95
913 962 2.579787 CCTGTAGCTCCGCGTTCG 60.580 66.667 4.92 0.00 0.00 3.95
914 963 2.178521 CTGTAGCTCCGCGTTCGT 59.821 61.111 4.92 0.00 0.00 3.85
915 964 1.868251 CTGTAGCTCCGCGTTCGTC 60.868 63.158 4.92 0.00 0.00 4.20
916 965 2.943034 GTAGCTCCGCGTTCGTCG 60.943 66.667 4.92 0.00 43.12 5.12
930 979 1.232119 TCGTCGCACTCTTGTACAGA 58.768 50.000 0.00 0.00 0.00 3.41
934 983 3.381949 GTCGCACTCTTGTACAGAAAGT 58.618 45.455 0.00 0.00 0.00 2.66
941 990 7.328737 CGCACTCTTGTACAGAAAGTAAATAGT 59.671 37.037 0.00 0.00 33.72 2.12
947 996 9.877178 CTTGTACAGAAAGTAAATAGTGATCCT 57.123 33.333 0.00 0.00 33.72 3.24
948 997 9.871238 TTGTACAGAAAGTAAATAGTGATCCTC 57.129 33.333 0.00 0.00 33.72 3.71
951 1000 7.560368 ACAGAAAGTAAATAGTGATCCTCCAG 58.440 38.462 0.00 0.00 0.00 3.86
952 1001 7.400339 ACAGAAAGTAAATAGTGATCCTCCAGA 59.600 37.037 0.00 0.00 0.00 3.86
954 1003 8.997734 AGAAAGTAAATAGTGATCCTCCAGAAT 58.002 33.333 0.00 0.00 0.00 2.40
955 1004 9.620259 GAAAGTAAATAGTGATCCTCCAGAATT 57.380 33.333 0.00 0.00 0.00 2.17
956 1005 9.981460 AAAGTAAATAGTGATCCTCCAGAATTT 57.019 29.630 0.00 0.00 0.00 1.82
964 1013 8.560124 AGTGATCCTCCAGAATTTTAGATACT 57.440 34.615 0.00 0.00 0.00 2.12
965 1014 9.661954 AGTGATCCTCCAGAATTTTAGATACTA 57.338 33.333 0.00 0.00 0.00 1.82
1046 1101 0.736672 TCTGTCTCGACTCTCGACGG 60.737 60.000 4.60 4.60 44.82 4.79
1047 1102 1.005275 TGTCTCGACTCTCGACGGT 60.005 57.895 0.00 0.00 44.82 4.83
1048 1103 1.289800 TGTCTCGACTCTCGACGGTG 61.290 60.000 0.00 0.00 44.82 4.94
1049 1104 1.740664 TCTCGACTCTCGACGGTGG 60.741 63.158 0.00 0.00 44.82 4.61
1050 1105 1.740664 CTCGACTCTCGACGGTGGA 60.741 63.158 0.00 0.00 44.82 4.02
1051 1106 1.697772 CTCGACTCTCGACGGTGGAG 61.698 65.000 13.29 13.29 44.82 3.86
1052 1107 2.486042 GACTCTCGACGGTGGAGC 59.514 66.667 14.48 0.00 0.00 4.70
1053 1108 2.282251 ACTCTCGACGGTGGAGCA 60.282 61.111 14.48 4.23 0.00 4.26
1055 1110 1.251527 ACTCTCGACGGTGGAGCAAT 61.252 55.000 14.48 0.91 0.00 3.56
1056 1111 0.803768 CTCTCGACGGTGGAGCAATG 60.804 60.000 14.48 2.57 0.00 2.82
1058 1113 2.434884 CGACGGTGGAGCAATGCT 60.435 61.111 7.79 7.79 43.88 3.79
1059 1114 2.743752 CGACGGTGGAGCAATGCTG 61.744 63.158 14.48 0.00 39.88 4.41
1135 1197 2.642254 CCGTGACCAAGACCGGCTA 61.642 63.158 0.00 0.00 33.20 3.93
1300 1734 0.101399 CTGTTCGAGATCACCCGGAG 59.899 60.000 0.73 0.00 0.00 4.63
1315 1749 2.266055 GAGGTGGGAGGCGTTCAG 59.734 66.667 0.00 0.00 0.00 3.02
1502 2808 0.828022 TACCGTTGCCCAGATCGAAT 59.172 50.000 0.00 0.00 0.00 3.34
1506 2812 0.379669 GTTGCCCAGATCGAATGCTG 59.620 55.000 0.00 0.00 0.00 4.41
1526 2832 2.507854 GGGGGATTCATCTCGCCGA 61.508 63.158 0.00 0.00 46.43 5.54
1528 2834 1.301009 GGGATTCATCTCGCCGACC 60.301 63.158 0.00 0.00 0.00 4.79
1529 2835 1.661821 GGATTCATCTCGCCGACCG 60.662 63.158 0.00 0.00 38.61 4.79
1537 2843 4.152644 TCGCCGACCGAGTATGAT 57.847 55.556 0.00 0.00 41.89 2.45
1764 5199 5.359756 GGCCAAATTGGATAGATTTTCACC 58.640 41.667 17.47 0.00 40.96 4.02
1765 5200 5.359756 GCCAAATTGGATAGATTTTCACCC 58.640 41.667 17.47 0.00 40.96 4.61
1785 5220 3.758554 CCCAGTTTGATCTAGTTTGTGGG 59.241 47.826 0.00 0.00 36.40 4.61
1787 5222 5.514136 CCCAGTTTGATCTAGTTTGTGGGTA 60.514 44.000 0.00 0.00 37.84 3.69
1826 5322 1.265095 CAACTCATGCTGCGAAACACT 59.735 47.619 0.00 0.00 0.00 3.55
1842 5338 3.071786 ACACTCATGATAGAAGCGACG 57.928 47.619 0.00 0.00 0.00 5.12
1843 5339 1.783711 CACTCATGATAGAAGCGACGC 59.216 52.381 13.03 13.03 0.00 5.19
1867 5380 7.132213 GCGCATGATAAACACACATAATAAGT 58.868 34.615 0.30 0.00 0.00 2.24
1927 5445 8.398665 GCTAACAGGGAACTTAAATAGAACATG 58.601 37.037 0.00 0.00 40.21 3.21
1928 5446 9.667107 CTAACAGGGAACTTAAATAGAACATGA 57.333 33.333 0.00 0.00 40.21 3.07
1929 5447 8.567285 AACAGGGAACTTAAATAGAACATGAG 57.433 34.615 0.00 0.00 40.21 2.90
1930 5448 7.918076 ACAGGGAACTTAAATAGAACATGAGA 58.082 34.615 0.00 0.00 40.21 3.27
1940 5458 6.969993 AATAGAACATGAGAGAGTACCCTC 57.030 41.667 0.00 0.00 38.04 4.30
1970 5488 5.178797 GCTTGCACTATGTCTAAAAGGAGA 58.821 41.667 0.00 0.00 0.00 3.71
1971 5489 5.064071 GCTTGCACTATGTCTAAAAGGAGAC 59.936 44.000 0.00 0.00 45.19 3.36
1972 5490 5.086104 TGCACTATGTCTAAAAGGAGACC 57.914 43.478 1.33 0.00 44.49 3.85
1984 5502 1.203441 AGGAGACCCTGAATGCAGCA 61.203 55.000 0.00 0.00 42.42 4.41
2070 5588 0.179004 ATTTGCCTTGTCGGTCACCA 60.179 50.000 0.00 0.00 34.25 4.17
2071 5589 0.179004 TTTGCCTTGTCGGTCACCAT 60.179 50.000 0.00 0.00 34.25 3.55
2072 5590 0.687920 TTGCCTTGTCGGTCACCATA 59.312 50.000 0.00 0.00 34.25 2.74
2091 5609 3.959975 GCGGTGCACTTTTCGGCA 61.960 61.111 17.98 0.00 37.77 5.69
2198 5719 5.129980 AGCCTTATCAACATCTCTGTCATCA 59.870 40.000 0.00 0.00 33.36 3.07
2251 5772 2.736670 AAGGAAACAACAGGCAGTCT 57.263 45.000 0.00 0.00 0.00 3.24
2255 5776 2.952310 GGAAACAACAGGCAGTCTCTTT 59.048 45.455 0.00 0.00 0.00 2.52
2380 5946 5.070001 TCCAACTGTAAAGAAATGGGAGTG 58.930 41.667 0.00 0.00 0.00 3.51
2383 5949 6.149474 CCAACTGTAAAGAAATGGGAGTGTAG 59.851 42.308 0.00 0.00 0.00 2.74
2384 5950 6.681729 ACTGTAAAGAAATGGGAGTGTAGA 57.318 37.500 0.00 0.00 0.00 2.59
2385 5951 6.465084 ACTGTAAAGAAATGGGAGTGTAGAC 58.535 40.000 0.00 0.00 0.00 2.59
2386 5952 6.042781 ACTGTAAAGAAATGGGAGTGTAGACA 59.957 38.462 0.00 0.00 0.00 3.41
2387 5953 6.228258 TGTAAAGAAATGGGAGTGTAGACAC 58.772 40.000 4.58 4.58 46.77 3.67
2399 5965 4.956034 GTGTAGACACTATTATGCTGCG 57.044 45.455 5.53 0.00 43.25 5.18
2433 5999 2.609459 CTGAATTAATCCGTCAGCGCTT 59.391 45.455 7.50 0.00 32.96 4.68
2487 6053 9.772973 ATAGGAAACGTAATGATGCTAATGTAA 57.227 29.630 0.00 0.00 0.00 2.41
2800 7072 2.344025 CGCAGACTTAACTTACCACCC 58.656 52.381 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.109179 CAAACGGACATGCCACATGG 60.109 55.000 11.91 0.00 35.94 3.66
7 8 0.733566 GCAAACGGACATGCCACATG 60.734 55.000 6.03 6.03 36.56 3.21
8 9 1.177895 TGCAAACGGACATGCCACAT 61.178 50.000 0.00 0.00 41.87 3.21
9 10 1.387295 TTGCAAACGGACATGCCACA 61.387 50.000 0.00 0.00 41.87 4.17
10 11 0.939106 GTTGCAAACGGACATGCCAC 60.939 55.000 0.00 0.00 41.87 5.01
11 12 1.361993 GTTGCAAACGGACATGCCA 59.638 52.632 0.00 0.00 41.87 4.92
12 13 4.243383 GTTGCAAACGGACATGCC 57.757 55.556 0.00 0.00 41.87 4.40
22 23 0.465460 AAGGAGCCGACAGTTGCAAA 60.465 50.000 0.00 0.00 0.00 3.68
23 24 1.148273 AAGGAGCCGACAGTTGCAA 59.852 52.632 0.00 0.00 0.00 4.08
24 25 1.597854 CAAGGAGCCGACAGTTGCA 60.598 57.895 0.00 0.00 0.00 4.08
25 26 1.301716 TCAAGGAGCCGACAGTTGC 60.302 57.895 0.00 0.00 0.00 4.17
26 27 0.034059 AGTCAAGGAGCCGACAGTTG 59.966 55.000 0.00 0.00 34.48 3.16
27 28 0.759346 AAGTCAAGGAGCCGACAGTT 59.241 50.000 0.00 0.00 34.48 3.16
28 29 0.034059 CAAGTCAAGGAGCCGACAGT 59.966 55.000 0.00 0.00 34.48 3.55
29 30 1.294659 GCAAGTCAAGGAGCCGACAG 61.295 60.000 0.00 0.00 34.48 3.51
30 31 1.301716 GCAAGTCAAGGAGCCGACA 60.302 57.895 0.00 0.00 34.48 4.35
31 32 2.035442 GGCAAGTCAAGGAGCCGAC 61.035 63.158 0.00 0.00 37.41 4.79
32 33 2.347490 GGCAAGTCAAGGAGCCGA 59.653 61.111 0.00 0.00 37.41 5.54
34 35 0.321298 TAACGGCAAGTCAAGGAGCC 60.321 55.000 0.00 0.00 43.61 4.70
35 36 1.666189 GATAACGGCAAGTCAAGGAGC 59.334 52.381 0.00 0.00 0.00 4.70
36 37 3.252974 AGATAACGGCAAGTCAAGGAG 57.747 47.619 0.00 0.00 0.00 3.69
37 38 5.597182 AGTATAGATAACGGCAAGTCAAGGA 59.403 40.000 0.00 0.00 0.00 3.36
38 39 5.692204 CAGTATAGATAACGGCAAGTCAAGG 59.308 44.000 0.00 0.00 0.00 3.61
39 40 5.175856 GCAGTATAGATAACGGCAAGTCAAG 59.824 44.000 0.00 0.00 37.87 3.02
40 41 5.047847 GCAGTATAGATAACGGCAAGTCAA 58.952 41.667 0.00 0.00 37.87 3.18
41 42 4.341235 AGCAGTATAGATAACGGCAAGTCA 59.659 41.667 1.51 0.00 40.02 3.41
42 43 4.872664 AGCAGTATAGATAACGGCAAGTC 58.127 43.478 1.51 0.00 40.02 3.01
43 44 4.556898 CGAGCAGTATAGATAACGGCAAGT 60.557 45.833 1.51 0.00 40.02 3.16
44 45 3.914966 CGAGCAGTATAGATAACGGCAAG 59.085 47.826 1.51 0.00 40.02 4.01
45 46 3.566742 TCGAGCAGTATAGATAACGGCAA 59.433 43.478 1.51 0.00 40.02 4.52
46 47 3.143728 TCGAGCAGTATAGATAACGGCA 58.856 45.455 1.51 0.00 40.02 5.69
47 48 3.436015 TCTCGAGCAGTATAGATAACGGC 59.564 47.826 7.81 0.00 38.18 5.68
48 49 5.608676 TTCTCGAGCAGTATAGATAACGG 57.391 43.478 7.81 0.00 0.00 4.44
49 50 5.852229 GGTTTCTCGAGCAGTATAGATAACG 59.148 44.000 7.81 0.00 0.00 3.18
50 51 6.637658 GTGGTTTCTCGAGCAGTATAGATAAC 59.362 42.308 7.81 0.00 0.00 1.89
51 52 6.320418 TGTGGTTTCTCGAGCAGTATAGATAA 59.680 38.462 7.81 0.00 0.00 1.75
52 53 5.826208 TGTGGTTTCTCGAGCAGTATAGATA 59.174 40.000 7.81 0.00 0.00 1.98
53 54 4.645136 TGTGGTTTCTCGAGCAGTATAGAT 59.355 41.667 7.81 0.00 0.00 1.98
54 55 4.014406 TGTGGTTTCTCGAGCAGTATAGA 58.986 43.478 7.81 0.00 0.00 1.98
55 56 4.371855 TGTGGTTTCTCGAGCAGTATAG 57.628 45.455 7.81 0.00 0.00 1.31
56 57 4.159693 ACATGTGGTTTCTCGAGCAGTATA 59.840 41.667 7.81 0.00 0.00 1.47
57 58 3.055819 ACATGTGGTTTCTCGAGCAGTAT 60.056 43.478 7.81 0.00 0.00 2.12
58 59 2.299013 ACATGTGGTTTCTCGAGCAGTA 59.701 45.455 7.81 0.00 0.00 2.74
59 60 1.070758 ACATGTGGTTTCTCGAGCAGT 59.929 47.619 7.81 0.00 0.00 4.40
60 61 1.728971 GACATGTGGTTTCTCGAGCAG 59.271 52.381 7.81 0.00 0.00 4.24
61 62 1.069978 TGACATGTGGTTTCTCGAGCA 59.930 47.619 7.81 0.00 0.00 4.26
62 63 1.461127 GTGACATGTGGTTTCTCGAGC 59.539 52.381 7.81 0.00 0.00 5.03
63 64 2.069273 GGTGACATGTGGTTTCTCGAG 58.931 52.381 1.15 5.93 0.00 4.04
64 65 1.604438 CGGTGACATGTGGTTTCTCGA 60.604 52.381 1.15 0.00 0.00 4.04
65 66 0.790207 CGGTGACATGTGGTTTCTCG 59.210 55.000 1.15 0.00 0.00 4.04
66 67 2.163818 TCGGTGACATGTGGTTTCTC 57.836 50.000 1.15 0.00 0.00 2.87
67 68 2.616842 GTTTCGGTGACATGTGGTTTCT 59.383 45.455 1.15 0.00 0.00 2.52
68 69 2.356382 TGTTTCGGTGACATGTGGTTTC 59.644 45.455 1.15 0.00 0.00 2.78
69 70 2.370349 TGTTTCGGTGACATGTGGTTT 58.630 42.857 1.15 0.00 0.00 3.27
70 71 2.045561 TGTTTCGGTGACATGTGGTT 57.954 45.000 1.15 0.00 0.00 3.67
71 72 2.270352 ATGTTTCGGTGACATGTGGT 57.730 45.000 1.15 0.00 36.43 4.16
72 73 2.813754 AGAATGTTTCGGTGACATGTGG 59.186 45.455 1.15 0.00 37.76 4.17
73 74 3.498018 TCAGAATGTTTCGGTGACATGTG 59.502 43.478 1.15 0.00 37.76 3.21
74 75 3.498397 GTCAGAATGTTTCGGTGACATGT 59.502 43.478 0.00 0.00 37.76 3.21
75 76 3.120199 GGTCAGAATGTTTCGGTGACATG 60.120 47.826 10.11 0.00 36.88 3.21
76 77 3.074412 GGTCAGAATGTTTCGGTGACAT 58.926 45.455 10.11 0.00 36.88 3.06
77 78 2.104111 AGGTCAGAATGTTTCGGTGACA 59.896 45.455 10.11 0.00 36.88 3.58
78 79 2.480419 CAGGTCAGAATGTTTCGGTGAC 59.520 50.000 0.00 0.00 35.37 3.67
79 80 2.367241 TCAGGTCAGAATGTTTCGGTGA 59.633 45.455 0.00 0.00 37.40 4.02
80 81 2.480419 GTCAGGTCAGAATGTTTCGGTG 59.520 50.000 0.00 0.00 37.40 4.94
81 82 2.104111 TGTCAGGTCAGAATGTTTCGGT 59.896 45.455 0.00 0.00 37.40 4.69
82 83 2.766313 TGTCAGGTCAGAATGTTTCGG 58.234 47.619 0.00 0.00 37.40 4.30
83 84 3.748048 ACATGTCAGGTCAGAATGTTTCG 59.252 43.478 0.00 0.00 37.40 3.46
84 85 4.083110 CCACATGTCAGGTCAGAATGTTTC 60.083 45.833 0.00 0.00 37.40 2.78
85 86 3.822735 CCACATGTCAGGTCAGAATGTTT 59.177 43.478 0.00 0.00 37.40 2.83
86 87 3.072915 TCCACATGTCAGGTCAGAATGTT 59.927 43.478 0.00 0.00 37.40 2.71
87 88 2.639347 TCCACATGTCAGGTCAGAATGT 59.361 45.455 0.00 0.00 37.40 2.71
88 89 3.339253 TCCACATGTCAGGTCAGAATG 57.661 47.619 0.00 0.00 37.54 2.67
89 90 3.118112 GGATCCACATGTCAGGTCAGAAT 60.118 47.826 6.95 0.00 0.00 2.40
90 91 2.237143 GGATCCACATGTCAGGTCAGAA 59.763 50.000 6.95 0.00 0.00 3.02
91 92 1.833630 GGATCCACATGTCAGGTCAGA 59.166 52.381 6.95 0.00 0.00 3.27
92 93 1.472201 CGGATCCACATGTCAGGTCAG 60.472 57.143 13.41 0.00 0.00 3.51
93 94 0.536724 CGGATCCACATGTCAGGTCA 59.463 55.000 13.41 0.00 0.00 4.02
94 95 0.537188 ACGGATCCACATGTCAGGTC 59.463 55.000 13.41 0.00 0.00 3.85
100 101 1.485066 GGGTCTAACGGATCCACATGT 59.515 52.381 13.41 0.00 44.48 3.21
108 109 2.253610 TGACAAGTGGGTCTAACGGAT 58.746 47.619 0.00 0.00 38.61 4.18
109 110 1.707106 TGACAAGTGGGTCTAACGGA 58.293 50.000 0.00 0.00 38.61 4.69
112 113 4.819630 TGTTCATTGACAAGTGGGTCTAAC 59.180 41.667 0.00 0.00 38.61 2.34
113 114 5.042463 TGTTCATTGACAAGTGGGTCTAA 57.958 39.130 0.00 0.00 38.61 2.10
114 115 4.698201 TGTTCATTGACAAGTGGGTCTA 57.302 40.909 0.00 0.00 38.61 2.59
115 116 3.576078 TGTTCATTGACAAGTGGGTCT 57.424 42.857 0.00 0.00 38.61 3.85
116 117 4.278170 TGAATGTTCATTGACAAGTGGGTC 59.722 41.667 2.63 0.00 33.69 4.46
117 118 4.214310 TGAATGTTCATTGACAAGTGGGT 58.786 39.130 2.63 0.00 32.47 4.51
118 119 4.852134 TGAATGTTCATTGACAAGTGGG 57.148 40.909 2.63 0.00 32.47 4.61
119 120 7.718272 AATTTGAATGTTCATTGACAAGTGG 57.282 32.000 2.63 0.00 37.00 4.00
166 167 9.500785 TCTCGATAATGAAAACATGCCATATTA 57.499 29.630 0.00 0.00 0.00 0.98
167 168 8.394971 TCTCGATAATGAAAACATGCCATATT 57.605 30.769 0.00 0.00 0.00 1.28
168 169 7.361542 GCTCTCGATAATGAAAACATGCCATAT 60.362 37.037 0.00 0.00 0.00 1.78
169 170 6.073058 GCTCTCGATAATGAAAACATGCCATA 60.073 38.462 0.00 0.00 0.00 2.74
170 171 5.278169 GCTCTCGATAATGAAAACATGCCAT 60.278 40.000 0.00 0.00 0.00 4.40
171 172 4.035558 GCTCTCGATAATGAAAACATGCCA 59.964 41.667 0.00 0.00 0.00 4.92
172 173 4.274459 AGCTCTCGATAATGAAAACATGCC 59.726 41.667 0.00 0.00 0.00 4.40
173 174 5.415415 AGCTCTCGATAATGAAAACATGC 57.585 39.130 0.00 0.00 0.00 4.06
174 175 7.411264 CCGATAGCTCTCGATAATGAAAACATG 60.411 40.741 21.73 0.00 41.12 3.21
175 176 6.587990 CCGATAGCTCTCGATAATGAAAACAT 59.412 38.462 21.73 0.00 41.12 2.71
176 177 5.920840 CCGATAGCTCTCGATAATGAAAACA 59.079 40.000 21.73 0.00 41.12 2.83
177 178 5.346281 CCCGATAGCTCTCGATAATGAAAAC 59.654 44.000 21.73 0.00 41.12 2.43
178 179 5.010719 ACCCGATAGCTCTCGATAATGAAAA 59.989 40.000 21.73 0.00 41.12 2.29
179 180 4.523173 ACCCGATAGCTCTCGATAATGAAA 59.477 41.667 21.73 0.00 41.12 2.69
180 181 4.079970 ACCCGATAGCTCTCGATAATGAA 58.920 43.478 21.73 0.00 41.12 2.57
181 182 3.687125 ACCCGATAGCTCTCGATAATGA 58.313 45.455 21.73 0.00 41.12 2.57
182 183 4.201930 GGTACCCGATAGCTCTCGATAATG 60.202 50.000 21.73 5.53 41.12 1.90
183 184 3.946558 GGTACCCGATAGCTCTCGATAAT 59.053 47.826 21.73 7.37 41.12 1.28
184 185 3.341823 GGTACCCGATAGCTCTCGATAA 58.658 50.000 21.73 4.59 41.12 1.75
185 186 2.983229 GGTACCCGATAGCTCTCGATA 58.017 52.381 21.73 11.25 41.12 2.92
186 187 1.823797 GGTACCCGATAGCTCTCGAT 58.176 55.000 21.73 12.16 41.12 3.59
187 188 3.319135 GGTACCCGATAGCTCTCGA 57.681 57.895 21.73 0.22 41.12 4.04
201 202 1.371558 GATGGGATGCCGAGGGTAC 59.628 63.158 0.00 0.00 0.00 3.34
202 203 2.207229 CGATGGGATGCCGAGGGTA 61.207 63.158 0.00 0.00 0.00 3.69
203 204 3.550431 CGATGGGATGCCGAGGGT 61.550 66.667 0.00 0.00 0.00 4.34
204 205 3.106986 AACGATGGGATGCCGAGGG 62.107 63.158 0.00 0.00 0.00 4.30
205 206 1.889105 CAACGATGGGATGCCGAGG 60.889 63.158 0.00 0.00 0.00 4.63
206 207 1.143838 TCAACGATGGGATGCCGAG 59.856 57.895 0.00 0.00 0.00 4.63
207 208 1.153449 GTCAACGATGGGATGCCGA 60.153 57.895 0.00 0.00 0.00 5.54
208 209 1.153369 AGTCAACGATGGGATGCCG 60.153 57.895 0.00 0.00 0.00 5.69
209 210 0.107703 TCAGTCAACGATGGGATGCC 60.108 55.000 0.00 0.00 0.00 4.40
210 211 1.737838 TTCAGTCAACGATGGGATGC 58.262 50.000 0.00 0.00 0.00 3.91
211 212 3.747099 GTTTCAGTCAACGATGGGATG 57.253 47.619 0.00 0.00 0.00 3.51
220 221 4.557301 CCAAGTTCAAACGTTTCAGTCAAC 59.443 41.667 11.37 8.96 0.00 3.18
221 222 4.728534 CCAAGTTCAAACGTTTCAGTCAA 58.271 39.130 11.37 0.00 0.00 3.18
222 223 3.426963 GCCAAGTTCAAACGTTTCAGTCA 60.427 43.478 11.37 0.00 0.00 3.41
223 224 3.105937 GCCAAGTTCAAACGTTTCAGTC 58.894 45.455 11.37 2.50 0.00 3.51
224 225 2.477189 CGCCAAGTTCAAACGTTTCAGT 60.477 45.455 11.37 0.73 0.00 3.41
225 226 2.108700 CGCCAAGTTCAAACGTTTCAG 58.891 47.619 11.37 0.79 0.00 3.02
226 227 1.202200 CCGCCAAGTTCAAACGTTTCA 60.202 47.619 11.37 0.00 0.00 2.69
227 228 1.472990 CCGCCAAGTTCAAACGTTTC 58.527 50.000 11.37 0.00 0.00 2.78
228 229 0.101579 CCCGCCAAGTTCAAACGTTT 59.898 50.000 7.96 7.96 0.00 3.60
229 230 1.033202 ACCCGCCAAGTTCAAACGTT 61.033 50.000 0.00 0.00 0.00 3.99
230 231 1.452470 ACCCGCCAAGTTCAAACGT 60.452 52.632 0.00 0.00 0.00 3.99
231 232 1.008995 CACCCGCCAAGTTCAAACG 60.009 57.895 0.00 0.00 0.00 3.60
232 233 1.362355 CCACCCGCCAAGTTCAAAC 59.638 57.895 0.00 0.00 0.00 2.93
233 234 1.830408 CCCACCCGCCAAGTTCAAA 60.830 57.895 0.00 0.00 0.00 2.69
234 235 2.075355 ATCCCACCCGCCAAGTTCAA 62.075 55.000 0.00 0.00 0.00 2.69
235 236 2.478335 GATCCCACCCGCCAAGTTCA 62.478 60.000 0.00 0.00 0.00 3.18
236 237 1.749258 GATCCCACCCGCCAAGTTC 60.749 63.158 0.00 0.00 0.00 3.01
237 238 2.355115 GATCCCACCCGCCAAGTT 59.645 61.111 0.00 0.00 0.00 2.66
238 239 4.096003 CGATCCCACCCGCCAAGT 62.096 66.667 0.00 0.00 0.00 3.16
239 240 4.096003 ACGATCCCACCCGCCAAG 62.096 66.667 0.00 0.00 0.00 3.61
240 241 4.402528 CACGATCCCACCCGCCAA 62.403 66.667 0.00 0.00 0.00 4.52
242 243 4.832608 GACACGATCCCACCCGCC 62.833 72.222 0.00 0.00 0.00 6.13
243 244 4.832608 GGACACGATCCCACCCGC 62.833 72.222 0.00 0.00 42.46 6.13
280 281 2.662596 CGCTGGCAAGTCTGGGTA 59.337 61.111 0.00 0.00 0.00 3.69
283 284 3.123620 GAGCGCTGGCAAGTCTGG 61.124 66.667 18.48 0.00 43.41 3.86
284 285 3.485431 CGAGCGCTGGCAAGTCTG 61.485 66.667 18.48 0.00 43.41 3.51
287 288 3.825160 TTTCCGAGCGCTGGCAAGT 62.825 57.895 18.48 0.00 43.41 3.16
288 289 2.518836 CTTTTCCGAGCGCTGGCAAG 62.519 60.000 18.48 16.67 43.41 4.01
297 298 0.179189 CGTGCCATTCTTTTCCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
301 302 0.598065 AGCACGTGCCATTCTTTTCC 59.402 50.000 35.51 5.06 43.38 3.13
328 342 3.431725 GCACGCTCGGAAAAGGGG 61.432 66.667 0.00 0.00 33.74 4.79
341 355 2.186076 CTAGCTTTAACGAGAGGCACG 58.814 52.381 0.00 0.00 0.00 5.34
343 357 5.593679 AATACTAGCTTTAACGAGAGGCA 57.406 39.130 0.00 0.00 0.00 4.75
347 361 8.053026 ACTCAGAAATACTAGCTTTAACGAGA 57.947 34.615 0.00 0.00 0.00 4.04
350 364 8.893884 CGATACTCAGAAATACTAGCTTTAACG 58.106 37.037 0.00 0.00 0.00 3.18
370 384 2.427453 ACACATTTCCGAGAGCGATACT 59.573 45.455 0.00 0.00 40.82 2.12
373 387 1.204704 TGACACATTTCCGAGAGCGAT 59.795 47.619 0.00 0.00 40.82 4.58
375 389 0.716108 GTGACACATTTCCGAGAGCG 59.284 55.000 0.00 0.00 37.24 5.03
376 390 1.795768 TGTGACACATTTCCGAGAGC 58.204 50.000 3.56 0.00 0.00 4.09
382 396 4.510038 AGAAGCAATGTGACACATTTCC 57.490 40.909 27.37 20.91 45.80 3.13
388 402 5.611796 TGACAATAGAAGCAATGTGACAC 57.388 39.130 0.00 0.00 0.00 3.67
393 407 4.763793 ACAGCTTGACAATAGAAGCAATGT 59.236 37.500 0.00 0.00 45.88 2.71
396 410 5.532406 AGAAACAGCTTGACAATAGAAGCAA 59.468 36.000 0.00 0.00 45.88 3.91
398 412 5.619625 AGAAACAGCTTGACAATAGAAGC 57.380 39.130 0.00 0.00 44.16 3.86
399 413 9.160496 AGATAAGAAACAGCTTGACAATAGAAG 57.840 33.333 0.00 0.00 0.00 2.85
404 418 8.897752 GGATTAGATAAGAAACAGCTTGACAAT 58.102 33.333 0.00 0.00 0.00 2.71
413 427 6.599244 TGTTGCAGGGATTAGATAAGAAACAG 59.401 38.462 0.00 0.00 0.00 3.16
510 524 0.252696 TTTCTGAGGAGCTAGGGGCA 60.253 55.000 0.00 0.00 44.79 5.36
513 527 3.044894 AGGAATTTCTGAGGAGCTAGGG 58.955 50.000 0.00 0.00 0.00 3.53
519 533 3.688673 GTGCTTGAGGAATTTCTGAGGAG 59.311 47.826 0.00 0.00 0.00 3.69
523 537 4.456911 GTGATGTGCTTGAGGAATTTCTGA 59.543 41.667 0.00 0.00 0.00 3.27
524 538 4.216902 TGTGATGTGCTTGAGGAATTTCTG 59.783 41.667 0.00 0.00 0.00 3.02
536 550 4.761227 TGTGAATATGTGTGTGATGTGCTT 59.239 37.500 0.00 0.00 0.00 3.91
629 669 2.330440 ACTTGTGTGTGATGTGCTCA 57.670 45.000 0.00 0.00 0.00 4.26
655 695 8.467963 TGCATGAATTGACCTTATGTATGAAT 57.532 30.769 0.00 0.00 0.00 2.57
666 706 3.890756 TGTGAACTTGCATGAATTGACCT 59.109 39.130 6.60 0.00 0.00 3.85
670 710 6.701937 GCAATATGTGAACTTGCATGAATTG 58.298 36.000 6.60 5.78 43.62 2.32
733 773 5.197224 TGGGAATGAGATGATGTTCCTTT 57.803 39.130 0.00 0.00 39.96 3.11
738 778 4.531357 ACCATGGGAATGAGATGATGTT 57.469 40.909 18.09 0.00 0.00 2.71
740 780 4.758674 GTGTACCATGGGAATGAGATGATG 59.241 45.833 18.09 0.00 0.00 3.07
741 781 4.202503 GGTGTACCATGGGAATGAGATGAT 60.203 45.833 18.09 0.00 35.64 2.45
743 783 3.137176 AGGTGTACCATGGGAATGAGATG 59.863 47.826 18.09 0.00 38.89 2.90
744 784 3.392616 GAGGTGTACCATGGGAATGAGAT 59.607 47.826 18.09 0.00 38.89 2.75
745 785 2.771943 GAGGTGTACCATGGGAATGAGA 59.228 50.000 18.09 0.00 38.89 3.27
746 786 2.774234 AGAGGTGTACCATGGGAATGAG 59.226 50.000 18.09 0.00 38.89 2.90
747 787 2.771943 GAGAGGTGTACCATGGGAATGA 59.228 50.000 18.09 0.00 38.89 2.57
749 789 2.127708 GGAGAGGTGTACCATGGGAAT 58.872 52.381 18.09 0.00 38.89 3.01
750 790 1.580059 GGAGAGGTGTACCATGGGAA 58.420 55.000 18.09 0.00 38.89 3.97
751 791 0.326238 GGGAGAGGTGTACCATGGGA 60.326 60.000 18.09 3.85 38.89 4.37
757 799 1.382833 GGAGGGGGAGAGGTGTACC 60.383 68.421 0.00 0.00 0.00 3.34
759 801 1.232909 CTAGGAGGGGGAGAGGTGTA 58.767 60.000 0.00 0.00 0.00 2.90
815 857 4.605064 AAGGCATGCACACCTTGT 57.395 50.000 21.36 0.00 44.65 3.16
820 862 1.533625 TCTAACCAAGGCATGCACAC 58.466 50.000 21.36 1.57 0.00 3.82
825 867 5.902613 TCTTCAAATCTAACCAAGGCATG 57.097 39.130 0.00 0.00 0.00 4.06
836 878 8.739972 GGGCTTCAACTTTTATCTTCAAATCTA 58.260 33.333 0.00 0.00 0.00 1.98
837 879 7.310052 GGGGCTTCAACTTTTATCTTCAAATCT 60.310 37.037 0.00 0.00 0.00 2.40
839 881 6.572314 CGGGGCTTCAACTTTTATCTTCAAAT 60.572 38.462 0.00 0.00 0.00 2.32
840 882 5.278758 CGGGGCTTCAACTTTTATCTTCAAA 60.279 40.000 0.00 0.00 0.00 2.69
856 902 0.955919 CTCAACCAAGACGGGGCTTC 60.956 60.000 0.00 0.00 40.22 3.86
858 904 2.113243 GACTCAACCAAGACGGGGCT 62.113 60.000 0.00 0.00 40.22 5.19
859 905 1.671379 GACTCAACCAAGACGGGGC 60.671 63.158 0.00 0.00 40.22 5.80
872 921 5.524281 GGCTATATATCATCTCGTCGACTCA 59.476 44.000 14.70 0.00 0.00 3.41
873 922 5.049954 GGGCTATATATCATCTCGTCGACTC 60.050 48.000 14.70 0.00 0.00 3.36
874 923 4.817464 GGGCTATATATCATCTCGTCGACT 59.183 45.833 14.70 0.00 0.00 4.18
875 924 4.817464 AGGGCTATATATCATCTCGTCGAC 59.183 45.833 5.18 5.18 0.00 4.20
876 925 4.816925 CAGGGCTATATATCATCTCGTCGA 59.183 45.833 0.00 0.00 0.00 4.20
877 926 4.576873 ACAGGGCTATATATCATCTCGTCG 59.423 45.833 0.00 0.00 0.00 5.12
878 927 6.293735 GCTACAGGGCTATATATCATCTCGTC 60.294 46.154 0.00 0.00 0.00 4.20
879 928 5.533154 GCTACAGGGCTATATATCATCTCGT 59.467 44.000 0.00 0.00 0.00 4.18
880 929 5.767665 AGCTACAGGGCTATATATCATCTCG 59.232 44.000 0.00 0.00 41.16 4.04
886 935 4.839668 CGGAGCTACAGGGCTATATATC 57.160 50.000 0.00 0.00 43.20 1.63
908 957 0.701303 GTACAAGAGTGCGACGAACG 59.299 55.000 0.00 0.00 45.66 3.95
909 958 1.714460 CTGTACAAGAGTGCGACGAAC 59.286 52.381 0.00 0.00 32.48 3.95
910 959 1.605232 TCTGTACAAGAGTGCGACGAA 59.395 47.619 0.00 0.00 32.48 3.85
911 960 1.232119 TCTGTACAAGAGTGCGACGA 58.768 50.000 0.00 0.00 32.48 4.20
912 961 2.046283 TTCTGTACAAGAGTGCGACG 57.954 50.000 0.00 0.00 35.91 5.12
913 962 3.381949 ACTTTCTGTACAAGAGTGCGAC 58.618 45.455 0.00 0.00 35.91 5.19
914 963 3.728076 ACTTTCTGTACAAGAGTGCGA 57.272 42.857 0.00 0.00 35.91 5.10
915 964 5.900339 TTTACTTTCTGTACAAGAGTGCG 57.100 39.130 12.99 0.00 35.91 5.34
916 965 8.436200 CACTATTTACTTTCTGTACAAGAGTGC 58.564 37.037 12.99 0.00 36.29 4.40
917 966 9.692749 TCACTATTTACTTTCTGTACAAGAGTG 57.307 33.333 12.99 10.52 39.42 3.51
930 979 9.981460 AAATTCTGGAGGATCACTATTTACTTT 57.019 29.630 0.00 0.00 36.25 2.66
962 1011 8.921205 ACTCCAAAGGTTTCGTGTATATATAGT 58.079 33.333 0.00 0.00 0.00 2.12
965 1014 7.864379 CGTACTCCAAAGGTTTCGTGTATATAT 59.136 37.037 0.00 0.00 0.00 0.86
966 1015 7.066887 TCGTACTCCAAAGGTTTCGTGTATATA 59.933 37.037 0.00 0.00 0.00 0.86
967 1016 6.038356 CGTACTCCAAAGGTTTCGTGTATAT 58.962 40.000 0.00 0.00 0.00 0.86
968 1017 5.182950 TCGTACTCCAAAGGTTTCGTGTATA 59.817 40.000 0.00 0.00 0.00 1.47
1052 1107 0.108992 AGAACGCCATTGCAGCATTG 60.109 50.000 9.91 9.91 37.32 2.82
1053 1108 0.171903 GAGAACGCCATTGCAGCATT 59.828 50.000 0.00 0.00 37.32 3.56
1055 1110 2.679934 CGAGAACGCCATTGCAGCA 61.680 57.895 0.00 0.00 37.32 4.41
1056 1111 2.099062 CGAGAACGCCATTGCAGC 59.901 61.111 0.00 0.00 37.32 5.25
1058 1113 2.031919 ACCGAGAACGCCATTGCA 59.968 55.556 0.00 0.00 37.32 4.08
1059 1114 2.480555 CACCGAGAACGCCATTGC 59.519 61.111 0.00 0.00 38.29 3.56
1272 1588 3.744719 CTCGAACAGGGACGGCGA 61.745 66.667 16.62 0.00 0.00 5.54
1273 1589 2.938539 GATCTCGAACAGGGACGGCG 62.939 65.000 4.80 4.80 27.95 6.46
1300 1734 4.410400 CCCTGAACGCCTCCCACC 62.410 72.222 0.00 0.00 0.00 4.61
1483 2789 0.828022 ATTCGATCTGGGCAACGGTA 59.172 50.000 0.00 0.00 37.60 4.02
1517 2823 0.534427 TCATACTCGGTCGGCGAGAT 60.534 55.000 11.20 0.00 37.25 2.75
1519 2825 0.386100 CATCATACTCGGTCGGCGAG 60.386 60.000 11.20 0.00 39.20 5.03
1520 2826 1.099295 ACATCATACTCGGTCGGCGA 61.099 55.000 4.99 4.99 0.00 5.54
1521 2827 0.660595 GACATCATACTCGGTCGGCG 60.661 60.000 0.00 0.00 0.00 6.46
1522 2828 0.318784 GGACATCATACTCGGTCGGC 60.319 60.000 0.00 0.00 0.00 5.54
1526 2832 1.404391 GACACGGACATCATACTCGGT 59.596 52.381 0.00 0.00 0.00 4.69
1528 2834 2.844122 TGACACGGACATCATACTCG 57.156 50.000 0.00 0.00 0.00 4.18
1529 2835 2.852413 CGTTGACACGGACATCATACTC 59.148 50.000 0.00 0.00 43.16 2.59
1621 2927 2.811317 GCGCGTGACCTCTCTTGG 60.811 66.667 8.43 0.00 0.00 3.61
1643 2949 5.916661 TTATTTCTAGCTCGTGACCTCTT 57.083 39.130 0.00 0.00 0.00 2.85
1716 3226 5.964758 ACTGATTGCAAAACAAGAGACAAA 58.035 33.333 1.71 0.00 42.87 2.83
1720 3230 3.250762 CCGACTGATTGCAAAACAAGAGA 59.749 43.478 1.71 0.00 42.87 3.10
1764 5199 4.398319 ACCCACAAACTAGATCAAACTGG 58.602 43.478 0.00 0.00 0.00 4.00
1765 5200 7.687941 AATACCCACAAACTAGATCAAACTG 57.312 36.000 0.00 0.00 0.00 3.16
1785 5220 9.303537 GAGTTGAGACAGTTCAATAGGTAATAC 57.696 37.037 2.70 0.00 39.13 1.89
1787 5222 7.907389 TGAGTTGAGACAGTTCAATAGGTAAT 58.093 34.615 2.70 0.00 39.13 1.89
1826 5322 3.164028 CGCGTCGCTTCTATCATGA 57.836 52.632 16.36 0.00 0.00 3.07
1842 5338 7.132213 ACTTATTATGTGTGTTTATCATGCGC 58.868 34.615 0.00 0.00 0.00 6.09
1843 5339 9.502145 AAACTTATTATGTGTGTTTATCATGCG 57.498 29.630 0.00 0.00 0.00 4.73
1867 5380 8.865090 TGCAAGAACCCTTATCTATTTGAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
1927 5445 1.133606 CAGAGGGGAGGGTACTCTCTC 60.134 61.905 21.97 18.67 44.04 3.20
1928 5446 0.930726 CAGAGGGGAGGGTACTCTCT 59.069 60.000 21.97 2.42 44.04 3.10
1929 5447 0.757561 GCAGAGGGGAGGGTACTCTC 60.758 65.000 14.86 14.86 43.84 3.20
1930 5448 1.225403 AGCAGAGGGGAGGGTACTCT 61.225 60.000 0.00 0.00 43.46 3.24
1935 5453 3.334054 GCAAGCAGAGGGGAGGGT 61.334 66.667 0.00 0.00 0.00 4.34
1940 5458 0.254178 ACATAGTGCAAGCAGAGGGG 59.746 55.000 0.00 0.00 0.00 4.79
1970 5488 3.612251 GCATGCTGCATTCAGGGT 58.388 55.556 13.38 0.00 44.26 4.34
1984 5502 4.136978 CCTAGGGCGATAGGGCAT 57.863 61.111 0.00 0.00 44.56 4.40
1994 5512 2.355209 GCATAAGTATGAGCCCTAGGGC 60.355 54.545 41.24 41.24 46.03 5.19
2070 5588 0.802494 CCGAAAAGTGCACCGCTTAT 59.198 50.000 14.63 0.00 32.70 1.73
2071 5589 1.847890 GCCGAAAAGTGCACCGCTTA 61.848 55.000 14.63 0.00 32.70 3.09
2072 5590 3.030652 CCGAAAAGTGCACCGCTT 58.969 55.556 14.63 4.12 35.58 4.68
2091 5609 0.401738 CATGGGGTCTCCGGCATTAT 59.598 55.000 0.00 0.00 38.76 1.28
2098 5616 1.977854 TCATATTCCATGGGGTCTCCG 59.022 52.381 13.02 0.00 38.76 4.63
2198 5719 4.655963 ACACTGCAGAATTCTTGTATGGT 58.344 39.130 23.35 0.00 0.00 3.55
2251 5772 7.397221 TGAAGATGAATCTAGCCTTGAAAAGA 58.603 34.615 0.00 0.00 40.87 2.52
2255 5776 7.134362 AGATGAAGATGAATCTAGCCTTGAA 57.866 36.000 0.00 0.00 35.76 2.69
2380 5946 5.388890 GCATTCGCAGCATAATAGTGTCTAC 60.389 44.000 0.00 0.00 38.36 2.59
2383 5949 3.248363 TGCATTCGCAGCATAATAGTGTC 59.752 43.478 0.00 0.00 45.36 3.67
2384 5950 3.205338 TGCATTCGCAGCATAATAGTGT 58.795 40.909 0.00 0.00 45.36 3.55
2385 5951 3.883631 TGCATTCGCAGCATAATAGTG 57.116 42.857 0.00 0.00 45.36 2.74
2399 5965 7.915397 ACGGATTAATTCAGTAAACATGCATTC 59.085 33.333 0.00 0.00 30.39 2.67
2503 6069 7.404671 TCAGGTACAAAAGAAAAGCTTTCTT 57.595 32.000 13.10 13.90 45.85 2.52
2588 6154 2.180276 GCCCTCTGTAGAACTTCCTCA 58.820 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.