Multiple sequence alignment - TraesCS5A01G468900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G468900 chr5A 100.000 3535 0 0 1 3535 646056866 646060400 0.000000e+00 6529.0
1 TraesCS5A01G468900 chr5D 91.598 2440 142 39 1133 3535 519545129 519547542 0.000000e+00 3312.0
2 TraesCS5A01G468900 chr5D 87.420 628 24 20 457 1075 519544541 519545122 0.000000e+00 671.0
3 TraesCS5A01G468900 chr5D 78.095 210 46 0 3209 3418 423461512 423461303 2.210000e-27 134.0
4 TraesCS5A01G468900 chr5B 89.784 2310 150 46 1123 3398 654365753 654368010 0.000000e+00 2880.0
5 TraesCS5A01G468900 chr5B 90.214 654 25 12 435 1075 654365126 654365753 0.000000e+00 817.0
6 TraesCS5A01G468900 chr2D 83.024 754 122 4 1791 2541 574346298 574345548 0.000000e+00 678.0
7 TraesCS5A01G468900 chr2D 88.095 210 22 2 1524 1730 573852415 573852624 2.730000e-61 246.0
8 TraesCS5A01G468900 chr2D 84.653 202 30 1 1544 1744 574346786 574346585 2.150000e-47 200.0
9 TraesCS5A01G468900 chr2D 78.571 210 45 0 3209 3418 375617635 375617844 4.760000e-29 139.0
10 TraesCS5A01G468900 chr2D 78.571 210 45 0 3209 3418 375629303 375629512 4.760000e-29 139.0
11 TraesCS5A01G468900 chr2B 82.891 754 123 4 1791 2541 690211347 690210597 0.000000e+00 673.0
12 TraesCS5A01G468900 chr2B 84.685 222 30 3 1513 1730 689714720 689714941 5.940000e-53 219.0
13 TraesCS5A01G468900 chr2B 85.644 202 28 1 1544 1744 690211781 690211580 9.940000e-51 211.0
14 TraesCS5A01G468900 chr2B 77.119 118 23 4 1914 2029 608803014 608803129 8.190000e-07 65.8
15 TraesCS5A01G468900 chr2A 82.477 759 125 6 1792 2545 712707248 712706493 0.000000e+00 658.0
16 TraesCS5A01G468900 chr2A 80.878 706 117 10 1853 2545 712702485 712701785 1.120000e-149 540.0
17 TraesCS5A01G468900 chr2A 85.845 219 28 2 1524 1739 712317758 712317976 2.740000e-56 230.0
18 TraesCS5A01G468900 chr2A 85.000 200 29 1 1546 1744 712707702 712707503 5.980000e-48 202.0
19 TraesCS5A01G468900 chr7D 78.571 210 45 0 3209 3418 88150894 88151103 4.760000e-29 139.0
20 TraesCS5A01G468900 chr7D 77.143 210 48 0 3209 3418 406901341 406901132 4.790000e-24 122.0
21 TraesCS5A01G468900 chr6D 77.619 210 47 0 3209 3418 28026392 28026183 1.030000e-25 128.0
22 TraesCS5A01G468900 chr1D 77.143 210 48 0 3209 3418 458775932 458776141 4.790000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G468900 chr5A 646056866 646060400 3534 False 6529.0 6529 100.0000 1 3535 1 chr5A.!!$F1 3534
1 TraesCS5A01G468900 chr5D 519544541 519547542 3001 False 1991.5 3312 89.5090 457 3535 2 chr5D.!!$F1 3078
2 TraesCS5A01G468900 chr5B 654365126 654368010 2884 False 1848.5 2880 89.9990 435 3398 2 chr5B.!!$F1 2963
3 TraesCS5A01G468900 chr2D 574345548 574346786 1238 True 439.0 678 83.8385 1544 2541 2 chr2D.!!$R1 997
4 TraesCS5A01G468900 chr2B 690210597 690211781 1184 True 442.0 673 84.2675 1544 2541 2 chr2B.!!$R1 997
5 TraesCS5A01G468900 chr2A 712701785 712702485 700 True 540.0 540 80.8780 1853 2545 1 chr2A.!!$R1 692
6 TraesCS5A01G468900 chr2A 712706493 712707702 1209 True 430.0 658 83.7385 1546 2545 2 chr2A.!!$R2 999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 444 0.033642 GCTCCATTAGTCCCCGCTAC 59.966 60.0 0.0 0.0 0.00 3.58 F
1123 1140 0.101939 GTTCCCCTCGTCATCGTACC 59.898 60.0 0.0 0.0 38.33 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 1773 0.031314 GAGCGCGAGATGAGATTGGA 59.969 55.0 12.1 0.0 0.0 3.53 R
2596 2886 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.652947 TCTTCTTACCCCACCCTCAC 58.347 55.000 0.00 0.00 0.00 3.51
20 21 0.618981 CTTCTTACCCCACCCTCACC 59.381 60.000 0.00 0.00 0.00 4.02
21 22 0.843343 TTCTTACCCCACCCTCACCC 60.843 60.000 0.00 0.00 0.00 4.61
22 23 2.204182 TTACCCCACCCTCACCCC 60.204 66.667 0.00 0.00 0.00 4.95
23 24 3.895253 TTACCCCACCCTCACCCCC 62.895 68.421 0.00 0.00 0.00 5.40
32 33 3.650950 CTCACCCCCACCCCTGTG 61.651 72.222 0.00 0.00 42.39 3.66
47 48 4.096003 GTGCCGCTTCCCAGCCTA 62.096 66.667 0.00 0.00 44.06 3.93
48 49 3.785859 TGCCGCTTCCCAGCCTAG 61.786 66.667 0.00 0.00 44.06 3.02
50 51 4.554036 CCGCTTCCCAGCCTAGCC 62.554 72.222 0.00 0.00 44.06 3.93
51 52 4.554036 CGCTTCCCAGCCTAGCCC 62.554 72.222 0.00 0.00 44.06 5.19
52 53 3.093172 GCTTCCCAGCCTAGCCCT 61.093 66.667 0.00 0.00 40.61 5.19
53 54 1.766461 GCTTCCCAGCCTAGCCCTA 60.766 63.158 0.00 0.00 40.61 3.53
54 55 1.345715 GCTTCCCAGCCTAGCCCTAA 61.346 60.000 0.00 0.00 40.61 2.69
55 56 1.439543 CTTCCCAGCCTAGCCCTAAT 58.560 55.000 0.00 0.00 0.00 1.73
56 57 1.349357 CTTCCCAGCCTAGCCCTAATC 59.651 57.143 0.00 0.00 0.00 1.75
57 58 0.832135 TCCCAGCCTAGCCCTAATCG 60.832 60.000 0.00 0.00 0.00 3.34
58 59 0.832135 CCCAGCCTAGCCCTAATCGA 60.832 60.000 0.00 0.00 0.00 3.59
59 60 1.270907 CCAGCCTAGCCCTAATCGAT 58.729 55.000 0.00 0.00 0.00 3.59
60 61 1.066573 CCAGCCTAGCCCTAATCGATG 60.067 57.143 0.00 0.00 0.00 3.84
61 62 1.066573 CAGCCTAGCCCTAATCGATGG 60.067 57.143 0.00 0.00 0.00 3.51
62 63 1.203187 AGCCTAGCCCTAATCGATGGA 60.203 52.381 0.00 0.00 0.00 3.41
63 64 1.066787 GCCTAGCCCTAATCGATGGAC 60.067 57.143 0.00 0.00 0.00 4.02
64 65 2.530701 CCTAGCCCTAATCGATGGACT 58.469 52.381 0.00 0.00 0.00 3.85
65 66 2.494073 CCTAGCCCTAATCGATGGACTC 59.506 54.545 0.00 0.00 0.00 3.36
66 67 1.343069 AGCCCTAATCGATGGACTCC 58.657 55.000 0.00 0.00 0.00 3.85
67 68 0.038159 GCCCTAATCGATGGACTCCG 60.038 60.000 0.00 0.00 0.00 4.63
68 69 0.038159 CCCTAATCGATGGACTCCGC 60.038 60.000 0.00 0.00 0.00 5.54
69 70 0.038159 CCTAATCGATGGACTCCGCC 60.038 60.000 0.00 0.00 0.00 6.13
70 71 0.673985 CTAATCGATGGACTCCGCCA 59.326 55.000 0.00 0.00 43.23 5.69
71 72 0.387929 TAATCGATGGACTCCGCCAC 59.612 55.000 0.00 0.00 41.56 5.01
72 73 2.311688 AATCGATGGACTCCGCCACC 62.312 60.000 0.00 0.00 41.56 4.61
73 74 4.530857 CGATGGACTCCGCCACCC 62.531 72.222 0.00 0.00 41.56 4.61
74 75 3.399181 GATGGACTCCGCCACCCA 61.399 66.667 0.00 0.00 41.56 4.51
75 76 3.682292 GATGGACTCCGCCACCCAC 62.682 68.421 0.00 0.00 41.56 4.61
86 87 4.003788 CACCCACGGTCGAAGGCT 62.004 66.667 0.00 0.00 31.02 4.58
87 88 3.692406 ACCCACGGTCGAAGGCTC 61.692 66.667 0.00 0.00 0.00 4.70
88 89 3.382832 CCCACGGTCGAAGGCTCT 61.383 66.667 0.00 0.00 0.00 4.09
89 90 2.125912 CCACGGTCGAAGGCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
90 91 2.811317 CACGGTCGAAGGCTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
115 116 3.787001 GCCTTGCTACCCCGCTCT 61.787 66.667 0.00 0.00 0.00 4.09
116 117 2.501610 CCTTGCTACCCCGCTCTC 59.498 66.667 0.00 0.00 0.00 3.20
117 118 2.501610 CTTGCTACCCCGCTCTCC 59.498 66.667 0.00 0.00 0.00 3.71
118 119 3.081409 TTGCTACCCCGCTCTCCC 61.081 66.667 0.00 0.00 0.00 4.30
120 121 4.862823 GCTACCCCGCTCTCCCCT 62.863 72.222 0.00 0.00 0.00 4.79
121 122 2.522193 CTACCCCGCTCTCCCCTC 60.522 72.222 0.00 0.00 0.00 4.30
122 123 4.517934 TACCCCGCTCTCCCCTCG 62.518 72.222 0.00 0.00 0.00 4.63
126 127 4.824515 CCGCTCTCCCCTCGACCT 62.825 72.222 0.00 0.00 0.00 3.85
127 128 2.756283 CGCTCTCCCCTCGACCTT 60.756 66.667 0.00 0.00 0.00 3.50
128 129 2.776913 CGCTCTCCCCTCGACCTTC 61.777 68.421 0.00 0.00 0.00 3.46
129 130 2.428085 GCTCTCCCCTCGACCTTCC 61.428 68.421 0.00 0.00 0.00 3.46
130 131 1.758906 CTCTCCCCTCGACCTTCCC 60.759 68.421 0.00 0.00 0.00 3.97
131 132 2.764547 CTCCCCTCGACCTTCCCC 60.765 72.222 0.00 0.00 0.00 4.81
132 133 4.772231 TCCCCTCGACCTTCCCCG 62.772 72.222 0.00 0.00 0.00 5.73
133 134 4.772231 CCCCTCGACCTTCCCCGA 62.772 72.222 0.00 0.00 0.00 5.14
134 135 3.459063 CCCTCGACCTTCCCCGAC 61.459 72.222 0.00 0.00 0.00 4.79
135 136 3.459063 CCTCGACCTTCCCCGACC 61.459 72.222 0.00 0.00 0.00 4.79
136 137 3.823330 CTCGACCTTCCCCGACCG 61.823 72.222 0.00 0.00 0.00 4.79
168 169 2.459555 CCACCCAAGGCCAAATATCT 57.540 50.000 5.01 0.00 0.00 1.98
169 170 3.593442 CCACCCAAGGCCAAATATCTA 57.407 47.619 5.01 0.00 0.00 1.98
170 171 3.909732 CCACCCAAGGCCAAATATCTAA 58.090 45.455 5.01 0.00 0.00 2.10
171 172 3.891366 CCACCCAAGGCCAAATATCTAAG 59.109 47.826 5.01 0.00 0.00 2.18
172 173 3.319122 CACCCAAGGCCAAATATCTAAGC 59.681 47.826 5.01 0.00 0.00 3.09
173 174 2.893489 CCCAAGGCCAAATATCTAAGCC 59.107 50.000 5.01 0.00 44.20 4.35
174 175 2.893489 CCAAGGCCAAATATCTAAGCCC 59.107 50.000 5.01 0.00 45.00 5.19
175 176 2.893489 CAAGGCCAAATATCTAAGCCCC 59.107 50.000 5.01 0.00 45.00 5.80
176 177 1.429299 AGGCCAAATATCTAAGCCCCC 59.571 52.381 5.01 0.00 45.00 5.40
191 192 3.652581 CCCCCTTGACCTCTTGTTC 57.347 57.895 0.00 0.00 0.00 3.18
192 193 0.038310 CCCCCTTGACCTCTTGTTCC 59.962 60.000 0.00 0.00 0.00 3.62
193 194 0.321653 CCCCTTGACCTCTTGTTCCG 60.322 60.000 0.00 0.00 0.00 4.30
194 195 0.321653 CCCTTGACCTCTTGTTCCGG 60.322 60.000 0.00 0.00 0.00 5.14
195 196 0.396811 CCTTGACCTCTTGTTCCGGT 59.603 55.000 0.00 0.00 0.00 5.28
196 197 1.621814 CCTTGACCTCTTGTTCCGGTA 59.378 52.381 0.00 0.00 0.00 4.02
197 198 2.353803 CCTTGACCTCTTGTTCCGGTAG 60.354 54.545 0.00 0.00 0.00 3.18
198 199 0.606604 TGACCTCTTGTTCCGGTAGC 59.393 55.000 0.00 0.00 0.00 3.58
199 200 0.108281 GACCTCTTGTTCCGGTAGCC 60.108 60.000 0.00 0.00 0.00 3.93
200 201 1.221021 CCTCTTGTTCCGGTAGCCC 59.779 63.158 0.00 0.00 0.00 5.19
201 202 1.221021 CTCTTGTTCCGGTAGCCCC 59.779 63.158 0.00 0.00 0.00 5.80
202 203 2.253403 CTCTTGTTCCGGTAGCCCCC 62.253 65.000 0.00 0.00 0.00 5.40
203 204 2.204029 TTGTTCCGGTAGCCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
204 205 0.979187 CTTGTTCCGGTAGCCCCCTA 60.979 60.000 0.00 0.00 0.00 3.53
205 206 1.266867 TTGTTCCGGTAGCCCCCTAC 61.267 60.000 0.00 0.00 42.60 3.18
206 207 1.686800 GTTCCGGTAGCCCCCTACA 60.687 63.158 0.00 0.00 44.64 2.74
207 208 1.686800 TTCCGGTAGCCCCCTACAC 60.687 63.158 0.00 0.00 44.64 2.90
208 209 2.364579 CCGGTAGCCCCCTACACA 60.365 66.667 0.00 0.00 44.64 3.72
209 210 2.728435 CCGGTAGCCCCCTACACAC 61.728 68.421 0.00 0.00 44.64 3.82
210 211 2.728435 CGGTAGCCCCCTACACACC 61.728 68.421 3.60 0.00 44.64 4.16
211 212 2.728435 GGTAGCCCCCTACACACCG 61.728 68.421 3.60 0.00 44.64 4.94
212 213 2.364579 TAGCCCCCTACACACCGG 60.365 66.667 0.00 0.00 0.00 5.28
215 216 4.404098 CCCCCTACACACCGGCAC 62.404 72.222 0.00 0.00 0.00 5.01
216 217 3.319198 CCCCTACACACCGGCACT 61.319 66.667 0.00 0.00 0.00 4.40
217 218 2.747686 CCCTACACACCGGCACTT 59.252 61.111 0.00 0.00 0.00 3.16
218 219 1.671054 CCCTACACACCGGCACTTG 60.671 63.158 0.00 0.00 0.00 3.16
219 220 2.325082 CCTACACACCGGCACTTGC 61.325 63.158 0.00 0.00 41.14 4.01
220 221 1.596752 CTACACACCGGCACTTGCA 60.597 57.895 0.00 0.00 44.36 4.08
221 222 1.841663 CTACACACCGGCACTTGCAC 61.842 60.000 0.00 0.00 44.36 4.57
222 223 2.595009 TACACACCGGCACTTGCACA 62.595 55.000 0.00 0.00 44.36 4.57
223 224 2.203337 ACACCGGCACTTGCACAT 60.203 55.556 0.00 0.00 44.36 3.21
224 225 2.256158 CACCGGCACTTGCACATG 59.744 61.111 0.00 0.00 44.36 3.21
225 226 2.203337 ACCGGCACTTGCACATGT 60.203 55.556 0.00 0.00 44.36 3.21
226 227 1.827789 ACCGGCACTTGCACATGTT 60.828 52.632 0.00 0.00 44.36 2.71
227 228 0.536233 ACCGGCACTTGCACATGTTA 60.536 50.000 0.00 0.00 44.36 2.41
228 229 0.595588 CCGGCACTTGCACATGTTAA 59.404 50.000 0.00 0.00 44.36 2.01
229 230 1.665735 CCGGCACTTGCACATGTTAAC 60.666 52.381 0.00 0.00 44.36 2.01
230 231 1.665735 CGGCACTTGCACATGTTAACC 60.666 52.381 2.48 0.00 44.36 2.85
231 232 1.613437 GGCACTTGCACATGTTAACCT 59.387 47.619 2.48 0.00 44.36 3.50
232 233 2.035832 GGCACTTGCACATGTTAACCTT 59.964 45.455 2.48 0.00 44.36 3.50
233 234 3.308530 GCACTTGCACATGTTAACCTTC 58.691 45.455 2.48 0.00 41.59 3.46
234 235 3.004734 GCACTTGCACATGTTAACCTTCT 59.995 43.478 2.48 0.00 41.59 2.85
235 236 4.499696 GCACTTGCACATGTTAACCTTCTT 60.500 41.667 2.48 0.00 41.59 2.52
236 237 5.215160 CACTTGCACATGTTAACCTTCTTC 58.785 41.667 2.48 0.00 0.00 2.87
237 238 4.278419 ACTTGCACATGTTAACCTTCTTCC 59.722 41.667 2.48 0.00 0.00 3.46
238 239 4.098914 TGCACATGTTAACCTTCTTCCT 57.901 40.909 2.48 0.00 0.00 3.36
239 240 4.072131 TGCACATGTTAACCTTCTTCCTC 58.928 43.478 2.48 0.00 0.00 3.71
240 241 3.125316 GCACATGTTAACCTTCTTCCTCG 59.875 47.826 2.48 0.00 0.00 4.63
241 242 3.684788 CACATGTTAACCTTCTTCCTCGG 59.315 47.826 2.48 0.00 0.00 4.63
242 243 2.467566 TGTTAACCTTCTTCCTCGGC 57.532 50.000 2.48 0.00 0.00 5.54
243 244 1.975680 TGTTAACCTTCTTCCTCGGCT 59.024 47.619 2.48 0.00 0.00 5.52
244 245 2.028385 TGTTAACCTTCTTCCTCGGCTC 60.028 50.000 2.48 0.00 0.00 4.70
245 246 1.192428 TAACCTTCTTCCTCGGCTCC 58.808 55.000 0.00 0.00 0.00 4.70
246 247 0.836400 AACCTTCTTCCTCGGCTCCA 60.836 55.000 0.00 0.00 0.00 3.86
247 248 0.836400 ACCTTCTTCCTCGGCTCCAA 60.836 55.000 0.00 0.00 0.00 3.53
248 249 0.391793 CCTTCTTCCTCGGCTCCAAC 60.392 60.000 0.00 0.00 0.00 3.77
249 250 0.610687 CTTCTTCCTCGGCTCCAACT 59.389 55.000 0.00 0.00 0.00 3.16
250 251 0.321671 TTCTTCCTCGGCTCCAACTG 59.678 55.000 0.00 0.00 0.00 3.16
251 252 1.743252 CTTCCTCGGCTCCAACTGC 60.743 63.158 0.00 0.00 0.00 4.40
252 253 2.454832 CTTCCTCGGCTCCAACTGCA 62.455 60.000 0.00 0.00 0.00 4.41
253 254 2.032528 CCTCGGCTCCAACTGCAA 59.967 61.111 0.00 0.00 0.00 4.08
254 255 2.328099 CCTCGGCTCCAACTGCAAC 61.328 63.158 0.00 0.00 0.00 4.17
255 256 2.664851 TCGGCTCCAACTGCAACG 60.665 61.111 0.00 0.00 0.00 4.10
256 257 4.389576 CGGCTCCAACTGCAACGC 62.390 66.667 0.00 0.00 0.00 4.84
257 258 4.043200 GGCTCCAACTGCAACGCC 62.043 66.667 0.00 0.00 0.00 5.68
258 259 4.389576 GCTCCAACTGCAACGCCG 62.390 66.667 0.00 0.00 0.00 6.46
259 260 4.389576 CTCCAACTGCAACGCCGC 62.390 66.667 0.00 0.00 0.00 6.53
276 277 4.724697 CGGCTTGCTGCGTCGTTG 62.725 66.667 0.00 0.00 44.05 4.10
279 280 4.724697 CTTGCTGCGTCGTTGCCG 62.725 66.667 8.61 0.00 0.00 5.69
283 284 3.118454 CTGCGTCGTTGCCGGATT 61.118 61.111 5.05 0.00 33.95 3.01
284 285 2.666862 TGCGTCGTTGCCGGATTT 60.667 55.556 5.05 0.00 33.95 2.17
285 286 2.202298 GCGTCGTTGCCGGATTTG 60.202 61.111 5.05 0.00 33.95 2.32
286 287 2.478746 CGTCGTTGCCGGATTTGG 59.521 61.111 5.05 0.00 33.95 3.28
287 288 2.322081 CGTCGTTGCCGGATTTGGT 61.322 57.895 5.05 0.00 33.95 3.67
288 289 1.500396 GTCGTTGCCGGATTTGGTC 59.500 57.895 5.05 0.00 33.95 4.02
289 290 1.071642 TCGTTGCCGGATTTGGTCA 59.928 52.632 5.05 0.00 33.95 4.02
290 291 0.953471 TCGTTGCCGGATTTGGTCAG 60.953 55.000 5.05 0.00 33.95 3.51
291 292 0.953471 CGTTGCCGGATTTGGTCAGA 60.953 55.000 5.05 0.00 0.00 3.27
292 293 1.243902 GTTGCCGGATTTGGTCAGAA 58.756 50.000 5.05 0.00 0.00 3.02
293 294 1.611491 GTTGCCGGATTTGGTCAGAAA 59.389 47.619 5.05 0.00 0.00 2.52
294 295 1.988293 TGCCGGATTTGGTCAGAAAA 58.012 45.000 5.05 0.00 0.00 2.29
295 296 2.524306 TGCCGGATTTGGTCAGAAAAT 58.476 42.857 5.05 0.00 0.00 1.82
296 297 3.691575 TGCCGGATTTGGTCAGAAAATA 58.308 40.909 5.05 0.00 0.00 1.40
297 298 3.694072 TGCCGGATTTGGTCAGAAAATAG 59.306 43.478 5.05 0.00 0.00 1.73
298 299 3.694566 GCCGGATTTGGTCAGAAAATAGT 59.305 43.478 5.05 0.00 0.00 2.12
299 300 4.438744 GCCGGATTTGGTCAGAAAATAGTG 60.439 45.833 5.05 0.00 0.00 2.74
300 301 4.096382 CCGGATTTGGTCAGAAAATAGTGG 59.904 45.833 0.00 0.00 0.00 4.00
301 302 4.096382 CGGATTTGGTCAGAAAATAGTGGG 59.904 45.833 0.00 0.00 0.00 4.61
302 303 5.016831 GGATTTGGTCAGAAAATAGTGGGT 58.983 41.667 0.00 0.00 0.00 4.51
303 304 5.125578 GGATTTGGTCAGAAAATAGTGGGTC 59.874 44.000 0.00 0.00 0.00 4.46
304 305 4.715534 TTGGTCAGAAAATAGTGGGTCA 57.284 40.909 0.00 0.00 0.00 4.02
305 306 4.927267 TGGTCAGAAAATAGTGGGTCAT 57.073 40.909 0.00 0.00 0.00 3.06
306 307 4.588899 TGGTCAGAAAATAGTGGGTCATG 58.411 43.478 0.00 0.00 0.00 3.07
307 308 4.288366 TGGTCAGAAAATAGTGGGTCATGA 59.712 41.667 0.00 0.00 0.00 3.07
308 309 5.044919 TGGTCAGAAAATAGTGGGTCATGAT 60.045 40.000 0.00 0.00 0.00 2.45
309 310 5.888161 GGTCAGAAAATAGTGGGTCATGATT 59.112 40.000 0.00 0.00 0.00 2.57
310 311 6.378280 GGTCAGAAAATAGTGGGTCATGATTT 59.622 38.462 0.00 0.00 0.00 2.17
311 312 7.093771 GGTCAGAAAATAGTGGGTCATGATTTT 60.094 37.037 0.00 0.00 33.54 1.82
312 313 8.306761 GTCAGAAAATAGTGGGTCATGATTTTT 58.693 33.333 0.00 0.00 31.59 1.94
335 336 9.762381 TTTTTAGTAAGTGGGGTCAATCATATT 57.238 29.630 0.00 0.00 0.00 1.28
336 337 9.762381 TTTTAGTAAGTGGGGTCAATCATATTT 57.238 29.630 0.00 0.00 0.00 1.40
337 338 9.762381 TTTAGTAAGTGGGGTCAATCATATTTT 57.238 29.630 0.00 0.00 0.00 1.82
338 339 9.762381 TTAGTAAGTGGGGTCAATCATATTTTT 57.238 29.630 0.00 0.00 0.00 1.94
372 373 9.931210 AAGTTAATCGTTTACTCTTTTGTGAAG 57.069 29.630 0.00 0.00 0.00 3.02
373 374 9.321562 AGTTAATCGTTTACTCTTTTGTGAAGA 57.678 29.630 0.00 0.00 0.00 2.87
374 375 9.925268 GTTAATCGTTTACTCTTTTGTGAAGAA 57.075 29.630 0.00 0.00 0.00 2.52
376 377 7.787725 ATCGTTTACTCTTTTGTGAAGAAGT 57.212 32.000 0.00 0.00 0.00 3.01
377 378 7.605410 TCGTTTACTCTTTTGTGAAGAAGTT 57.395 32.000 0.00 0.00 0.00 2.66
378 379 8.706492 TCGTTTACTCTTTTGTGAAGAAGTTA 57.294 30.769 0.00 0.00 0.00 2.24
379 380 9.153721 TCGTTTACTCTTTTGTGAAGAAGTTAA 57.846 29.630 0.00 0.00 0.00 2.01
380 381 9.931210 CGTTTACTCTTTTGTGAAGAAGTTAAT 57.069 29.630 0.00 0.00 0.00 1.40
426 427 3.402628 AAAATATCTACGGGCGATGCT 57.597 42.857 0.00 0.00 0.00 3.79
427 428 2.656560 AATATCTACGGGCGATGCTC 57.343 50.000 0.00 0.00 0.00 4.26
428 429 0.818296 ATATCTACGGGCGATGCTCC 59.182 55.000 0.00 0.00 0.00 4.70
429 430 0.538746 TATCTACGGGCGATGCTCCA 60.539 55.000 0.00 0.00 0.00 3.86
430 431 1.188219 ATCTACGGGCGATGCTCCAT 61.188 55.000 0.00 0.00 0.00 3.41
431 432 1.069765 CTACGGGCGATGCTCCATT 59.930 57.895 0.00 0.00 0.00 3.16
432 433 0.317160 CTACGGGCGATGCTCCATTA 59.683 55.000 0.00 0.00 0.00 1.90
433 434 0.317160 TACGGGCGATGCTCCATTAG 59.683 55.000 0.00 0.00 0.00 1.73
441 442 1.056700 ATGCTCCATTAGTCCCCGCT 61.057 55.000 0.00 0.00 0.00 5.52
443 444 0.033642 GCTCCATTAGTCCCCGCTAC 59.966 60.000 0.00 0.00 0.00 3.58
559 563 2.821366 GGTGCGCCACATCTCAGG 60.821 66.667 12.58 0.00 35.86 3.86
560 564 2.265739 GTGCGCCACATCTCAGGA 59.734 61.111 4.18 0.00 34.08 3.86
669 678 3.699038 TCCAAATCCTCCAAATTTAGCCG 59.301 43.478 0.00 0.00 0.00 5.52
689 698 2.171870 CGCCTCCCAAACCCTATAAGAA 59.828 50.000 0.00 0.00 0.00 2.52
690 699 3.744530 CGCCTCCCAAACCCTATAAGAAG 60.745 52.174 0.00 0.00 0.00 2.85
691 700 3.458487 GCCTCCCAAACCCTATAAGAAGA 59.542 47.826 0.00 0.00 0.00 2.87
692 701 4.079958 GCCTCCCAAACCCTATAAGAAGAA 60.080 45.833 0.00 0.00 0.00 2.52
693 702 5.437946 CCTCCCAAACCCTATAAGAAGAAC 58.562 45.833 0.00 0.00 0.00 3.01
694 703 5.191921 CCTCCCAAACCCTATAAGAAGAACT 59.808 44.000 0.00 0.00 0.00 3.01
695 704 6.062258 TCCCAAACCCTATAAGAAGAACTG 57.938 41.667 0.00 0.00 0.00 3.16
696 705 5.788533 TCCCAAACCCTATAAGAAGAACTGA 59.211 40.000 0.00 0.00 0.00 3.41
697 706 6.447084 TCCCAAACCCTATAAGAAGAACTGAT 59.553 38.462 0.00 0.00 0.00 2.90
698 707 6.768381 CCCAAACCCTATAAGAAGAACTGATC 59.232 42.308 0.00 0.00 0.00 2.92
699 708 7.366011 CCCAAACCCTATAAGAAGAACTGATCT 60.366 40.741 0.00 0.00 41.32 2.75
700 709 7.713073 CCAAACCCTATAAGAAGAACTGATCTC 59.287 40.741 0.00 0.00 37.42 2.75
701 710 7.979786 AACCCTATAAGAAGAACTGATCTCA 57.020 36.000 0.00 0.00 37.42 3.27
714 723 4.481930 CTGATCTCAGTCTGTATCGACC 57.518 50.000 0.00 0.00 39.09 4.79
734 743 4.881440 TCCGCCATGCATGCTCCC 62.881 66.667 21.69 7.84 0.00 4.30
738 747 1.827394 GCCATGCATGCTCCCATTT 59.173 52.632 21.69 0.00 0.00 2.32
742 751 2.355310 CCATGCATGCTCCCATTTGTTT 60.355 45.455 21.69 0.00 0.00 2.83
748 757 4.754114 GCATGCTCCCATTTGTTTTTGTTA 59.246 37.500 11.37 0.00 0.00 2.41
821 838 1.079266 GCTCTGGCTGACTGAGTGG 60.079 63.158 17.33 0.00 44.42 4.00
822 839 1.825281 GCTCTGGCTGACTGAGTGGT 61.825 60.000 17.33 0.00 44.42 4.16
823 840 0.246086 CTCTGGCTGACTGAGTGGTC 59.754 60.000 9.09 0.00 39.53 4.02
827 844 1.103803 GGCTGACTGAGTGGTCGATA 58.896 55.000 0.00 0.00 38.91 2.92
828 845 1.202313 GGCTGACTGAGTGGTCGATAC 60.202 57.143 0.00 0.00 38.91 2.24
851 868 3.730761 GATCGCCGGATGCATGCC 61.731 66.667 16.68 8.69 41.33 4.40
918 935 6.940298 CGGAAAGGAAGGGATATTAATTGCTA 59.060 38.462 0.00 0.00 0.00 3.49
926 943 5.187186 AGGGATATTAATTGCTACCGATCGT 59.813 40.000 15.09 4.92 0.00 3.73
1093 1110 3.382832 CGGCCGAGAACCTGACCT 61.383 66.667 24.07 0.00 0.00 3.85
1094 1111 2.943978 CGGCCGAGAACCTGACCTT 61.944 63.158 24.07 0.00 0.00 3.50
1095 1112 1.376037 GGCCGAGAACCTGACCTTG 60.376 63.158 0.00 0.00 0.00 3.61
1096 1113 1.376037 GCCGAGAACCTGACCTTGG 60.376 63.158 0.00 0.00 37.08 3.61
1097 1114 1.376037 CCGAGAACCTGACCTTGGC 60.376 63.158 0.00 0.00 0.00 4.52
1098 1115 1.738099 CGAGAACCTGACCTTGGCG 60.738 63.158 0.00 0.00 0.00 5.69
1099 1116 2.032681 AGAACCTGACCTTGGCGC 59.967 61.111 0.00 0.00 0.00 6.53
1100 1117 3.423154 GAACCTGACCTTGGCGCG 61.423 66.667 0.00 0.00 0.00 6.86
1116 1133 3.691342 CGGCTGTTCCCCTCGTCA 61.691 66.667 0.00 0.00 0.00 4.35
1117 1134 2.990479 GGCTGTTCCCCTCGTCAT 59.010 61.111 0.00 0.00 0.00 3.06
1118 1135 1.153349 GGCTGTTCCCCTCGTCATC 60.153 63.158 0.00 0.00 0.00 2.92
1119 1136 1.519455 GCTGTTCCCCTCGTCATCG 60.519 63.158 0.00 0.00 38.55 3.84
1120 1137 1.890894 CTGTTCCCCTCGTCATCGT 59.109 57.895 0.00 0.00 38.33 3.73
1121 1138 1.100510 CTGTTCCCCTCGTCATCGTA 58.899 55.000 0.00 0.00 38.33 3.43
1122 1139 0.813184 TGTTCCCCTCGTCATCGTAC 59.187 55.000 0.00 0.00 38.33 3.67
1123 1140 0.101939 GTTCCCCTCGTCATCGTACC 59.898 60.000 0.00 0.00 38.33 3.34
1124 1141 0.323633 TTCCCCTCGTCATCGTACCA 60.324 55.000 0.00 0.00 38.33 3.25
1125 1142 1.033746 TCCCCTCGTCATCGTACCAC 61.034 60.000 0.00 0.00 38.33 4.16
1126 1143 1.063649 CCCTCGTCATCGTACCACG 59.936 63.158 0.00 0.00 44.19 4.94
1127 1144 1.063649 CCTCGTCATCGTACCACGG 59.936 63.158 0.00 0.00 42.81 4.94
1128 1145 1.585521 CTCGTCATCGTACCACGGC 60.586 63.158 0.00 0.00 42.81 5.68
1129 1146 2.947621 CGTCATCGTACCACGGCG 60.948 66.667 4.80 4.80 42.81 6.46
1130 1147 3.252484 GTCATCGTACCACGGCGC 61.252 66.667 6.90 0.00 42.81 6.53
1131 1148 3.750155 TCATCGTACCACGGCGCA 61.750 61.111 10.83 0.00 42.81 6.09
1203 1220 1.283793 CGACGACACCAAGGTACGT 59.716 57.895 18.42 18.42 40.62 3.57
1204 1221 0.516877 CGACGACACCAAGGTACGTA 59.483 55.000 18.40 0.00 39.13 3.57
1205 1222 1.131126 CGACGACACCAAGGTACGTAT 59.869 52.381 18.40 3.36 39.13 3.06
1206 1223 2.523015 GACGACACCAAGGTACGTATG 58.477 52.381 18.40 0.00 39.13 2.39
1210 1227 3.267483 GACACCAAGGTACGTATGCATT 58.733 45.455 3.54 0.00 0.00 3.56
1215 1232 3.938963 CCAAGGTACGTATGCATTTCAGT 59.061 43.478 3.54 2.89 0.00 3.41
1216 1233 4.394920 CCAAGGTACGTATGCATTTCAGTT 59.605 41.667 3.54 0.00 0.00 3.16
1217 1234 5.323900 CAAGGTACGTATGCATTTCAGTTG 58.676 41.667 3.54 0.00 0.00 3.16
1227 1244 3.055458 TGCATTTCAGTTGGGATCTCGTA 60.055 43.478 0.00 0.00 0.00 3.43
1257 1275 1.533165 GCTCGCTCGCTCGTTGATAC 61.533 60.000 0.00 0.00 0.00 2.24
1270 1288 3.651562 GTTGATACGATCCGTTTGTGG 57.348 47.619 0.00 0.00 41.54 4.17
1277 1295 3.524648 ATCCGTTTGTGGTCGCCGT 62.525 57.895 0.00 0.00 0.00 5.68
1377 1399 1.636148 GGTATACTACATGGGCCCGA 58.364 55.000 19.37 6.86 0.00 5.14
1514 1540 3.863543 CGCATTGCACGATGGCGA 61.864 61.111 9.69 0.00 41.64 5.54
1516 1542 2.463620 GCATTGCACGATGGCGAGA 61.464 57.895 3.15 0.00 41.64 4.04
1519 1545 0.529337 ATTGCACGATGGCGAGAGAG 60.529 55.000 0.00 0.00 41.64 3.20
1520 1546 2.959071 GCACGATGGCGAGAGAGC 60.959 66.667 0.00 0.00 41.64 4.09
1521 1547 2.491621 CACGATGGCGAGAGAGCA 59.508 61.111 0.00 0.00 41.64 4.26
1522 1548 1.588403 CACGATGGCGAGAGAGCAG 60.588 63.158 0.00 0.00 41.64 4.24
1523 1549 1.750780 ACGATGGCGAGAGAGCAGA 60.751 57.895 0.00 0.00 41.64 4.26
1524 1550 1.008652 CGATGGCGAGAGAGCAGAG 60.009 63.158 0.00 0.00 40.82 3.35
1525 1551 1.363443 GATGGCGAGAGAGCAGAGG 59.637 63.158 0.00 0.00 39.27 3.69
1526 1552 2.086251 GATGGCGAGAGAGCAGAGGG 62.086 65.000 0.00 0.00 39.27 4.30
1528 1554 4.219999 GCGAGAGAGCAGAGGGGC 62.220 72.222 0.00 0.00 37.05 5.80
1537 1570 0.407139 AGCAGAGGGGCTCATTTTGT 59.593 50.000 0.00 0.00 41.05 2.83
1562 1595 4.020617 CAGGGGACGCTCAAGGCA 62.021 66.667 0.00 0.00 41.91 4.75
1730 1763 4.083862 GTCCTCCCCACCGTGAGC 62.084 72.222 0.00 0.00 0.00 4.26
1739 1772 2.927856 ACCGTGAGCACCCATCCA 60.928 61.111 0.00 0.00 0.00 3.41
1740 1773 2.300967 ACCGTGAGCACCCATCCAT 61.301 57.895 0.00 0.00 0.00 3.41
1741 1774 1.524621 CCGTGAGCACCCATCCATC 60.525 63.158 0.00 0.00 0.00 3.51
1743 1776 1.609239 GTGAGCACCCATCCATCCA 59.391 57.895 0.00 0.00 0.00 3.41
1745 1778 0.928505 TGAGCACCCATCCATCCAAT 59.071 50.000 0.00 0.00 0.00 3.16
1747 1780 1.144503 GAGCACCCATCCATCCAATCT 59.855 52.381 0.00 0.00 0.00 2.40
1749 1782 1.133699 GCACCCATCCATCCAATCTCA 60.134 52.381 0.00 0.00 0.00 3.27
1750 1783 2.490351 GCACCCATCCATCCAATCTCAT 60.490 50.000 0.00 0.00 0.00 2.90
1752 1785 3.074094 CACCCATCCATCCAATCTCATCT 59.926 47.826 0.00 0.00 0.00 2.90
1755 1788 2.827800 TCCATCCAATCTCATCTCGC 57.172 50.000 0.00 0.00 0.00 5.03
1756 1789 1.000171 TCCATCCAATCTCATCTCGCG 60.000 52.381 0.00 0.00 0.00 5.87
1762 1795 0.595588 AATCTCATCTCGCGCTCGAT 59.404 50.000 5.56 3.94 44.56 3.59
1767 1800 1.125274 CATCTCGCGCTCGATCGATC 61.125 60.000 19.78 15.68 44.56 3.69
1774 1807 1.334239 GCGCTCGATCGATCACTAACT 60.334 52.381 24.40 0.00 0.00 2.24
1783 1816 4.288670 TCGATCACTAACTCGATCCAAC 57.711 45.455 0.00 0.00 38.86 3.77
1787 1820 2.555325 TCACTAACTCGATCCAACACGT 59.445 45.455 0.00 0.00 0.00 4.49
1968 2251 4.794439 TCCACATCGAGCGGTGCG 62.794 66.667 2.62 0.00 33.72 5.34
2033 2316 3.564218 ATCTCCATCGGCCAGGGC 61.564 66.667 2.24 1.81 41.06 5.19
2159 2442 2.417379 CGTCAAGGACATGACCTTCGAT 60.417 50.000 24.04 3.49 46.94 3.59
2189 2472 3.134127 GGGGTGCGCATCAAGACC 61.134 66.667 24.30 13.67 0.00 3.85
2241 2524 0.671781 GCACATGGTGTTCGAGAGCT 60.672 55.000 0.00 0.00 35.75 4.09
2581 2871 3.868661 GCTCGATCTTCTTTTTCCTCCTC 59.131 47.826 0.00 0.00 0.00 3.71
2584 2874 4.160626 TCGATCTTCTTTTTCCTCCTCCTC 59.839 45.833 0.00 0.00 0.00 3.71
2587 2877 3.841255 TCTTCTTTTTCCTCCTCCTCCTC 59.159 47.826 0.00 0.00 0.00 3.71
2590 2880 2.255770 TTTTCCTCCTCCTCCTCCTC 57.744 55.000 0.00 0.00 0.00 3.71
2593 2883 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2596 2886 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2599 2889 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2602 2892 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2605 2895 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2608 2898 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2609 2899 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
2610 2900 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2611 2901 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2646 2936 6.588719 TTTGATTGGTTGATGTTTCCTAGG 57.411 37.500 0.82 0.82 0.00 3.02
2654 2944 4.963276 TGATGTTTCCTAGGCGATTTTG 57.037 40.909 2.96 0.00 0.00 2.44
2655 2945 4.331968 TGATGTTTCCTAGGCGATTTTGT 58.668 39.130 2.96 0.00 0.00 2.83
2656 2946 4.394920 TGATGTTTCCTAGGCGATTTTGTC 59.605 41.667 2.96 0.00 0.00 3.18
2671 2961 5.285134 CGATTTTGTCGTTGTTTCTTGTTGT 59.715 36.000 0.00 0.00 45.19 3.32
2755 3051 2.749441 GGTTGCTGGCCTCTGAGC 60.749 66.667 3.32 4.81 35.65 4.26
2788 3084 3.755378 AGCAAGCTTTGTACATTCTGAGG 59.245 43.478 0.00 0.00 0.00 3.86
2800 3096 9.599866 TTGTACATTCTGAGGTGAATAATACTG 57.400 33.333 0.00 0.00 35.18 2.74
2863 3159 2.872858 GTTCATCCAGGAGATAAACGCC 59.127 50.000 0.00 0.00 38.77 5.68
2871 3167 0.586802 GAGATAAACGCCCCATTCGC 59.413 55.000 0.00 0.00 0.00 4.70
2876 3172 2.472414 AAACGCCCCATTCGCCACTA 62.472 55.000 0.00 0.00 0.00 2.74
2884 3180 1.927174 CCATTCGCCACTAAACTCTCG 59.073 52.381 0.00 0.00 0.00 4.04
2886 3182 0.315886 TTCGCCACTAAACTCTCGCA 59.684 50.000 0.00 0.00 0.00 5.10
2932 3228 4.273969 GTGATGAACCGGTCACTTTGTTTA 59.726 41.667 8.04 0.00 41.10 2.01
2934 3230 2.614983 TGAACCGGTCACTTTGTTTAGC 59.385 45.455 8.04 0.00 0.00 3.09
3019 3317 0.542702 CTTGGCCCCCACAGTCATTT 60.543 55.000 0.00 0.00 30.78 2.32
3033 3331 5.865552 CACAGTCATTTCATTTGGCCTTTAG 59.134 40.000 3.32 0.00 0.00 1.85
3117 3416 6.841781 TCCCAATTCTACTAGCCCTAAATT 57.158 37.500 0.00 0.00 0.00 1.82
3120 3419 6.410388 CCCAATTCTACTAGCCCTAAATTCCA 60.410 42.308 0.00 0.00 0.00 3.53
3181 3480 2.963371 GTCGCTCGAACTGACCCT 59.037 61.111 0.00 0.00 0.00 4.34
3214 3513 0.743688 TCGAGATGGAGCAAGAGAGC 59.256 55.000 0.00 0.00 0.00 4.09
3239 3538 2.217745 CCGGAGAATAGGGAGGGGC 61.218 68.421 0.00 0.00 0.00 5.80
3324 3623 3.175240 CGTTCTCCAGCGCACGAG 61.175 66.667 11.47 13.99 34.49 4.18
3375 3674 0.673644 GGTCGTGCACTGCTTGGTAT 60.674 55.000 16.19 0.00 0.00 2.73
3378 3677 1.134818 TCGTGCACTGCTTGGTATAGG 60.135 52.381 16.19 0.00 0.00 2.57
3446 3745 4.084171 CGGCGACACTATTAGAGATAACGA 60.084 45.833 0.00 0.00 0.00 3.85
3452 3751 7.412129 CGACACTATTAGAGATAACGAGCTAGG 60.412 44.444 0.00 0.00 0.00 3.02
3454 3753 7.720515 ACACTATTAGAGATAACGAGCTAGGTT 59.279 37.037 7.67 7.67 0.00 3.50
3467 3766 5.938125 ACGAGCTAGGTTCATGTACAATTTT 59.062 36.000 0.00 0.00 0.00 1.82
3471 3770 8.177119 AGCTAGGTTCATGTACAATTTTTGAA 57.823 30.769 0.00 1.84 0.00 2.69
3472 3771 8.806146 AGCTAGGTTCATGTACAATTTTTGAAT 58.194 29.630 11.02 1.28 0.00 2.57
3510 3809 3.900601 TGAATAAAATGGCAAGTGGTGGT 59.099 39.130 0.00 0.00 0.00 4.16
3518 3817 1.269723 GGCAAGTGGTGGTTCTAAAGC 59.730 52.381 0.00 0.00 0.00 3.51
3531 3830 4.254492 GTTCTAAAGCTTAGTCCCACCTG 58.746 47.826 0.00 0.00 0.00 4.00
3532 3831 3.786553 TCTAAAGCTTAGTCCCACCTGA 58.213 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.652947 GTGAGGGTGGGGTAAGAAGA 58.347 55.000 0.00 0.00 0.00 2.87
1 2 0.618981 GGTGAGGGTGGGGTAAGAAG 59.381 60.000 0.00 0.00 0.00 2.85
2 3 0.843343 GGGTGAGGGTGGGGTAAGAA 60.843 60.000 0.00 0.00 0.00 2.52
3 4 1.229723 GGGTGAGGGTGGGGTAAGA 60.230 63.158 0.00 0.00 0.00 2.10
4 5 2.306384 GGGGTGAGGGTGGGGTAAG 61.306 68.421 0.00 0.00 0.00 2.34
5 6 2.204182 GGGGTGAGGGTGGGGTAA 60.204 66.667 0.00 0.00 0.00 2.85
6 7 4.358181 GGGGGTGAGGGTGGGGTA 62.358 72.222 0.00 0.00 0.00 3.69
15 16 3.650950 CACAGGGGTGGGGGTGAG 61.651 72.222 0.00 0.00 41.45 3.51
30 31 4.096003 TAGGCTGGGAAGCGGCAC 62.096 66.667 1.45 0.00 35.24 5.01
31 32 3.785859 CTAGGCTGGGAAGCGGCA 61.786 66.667 1.45 0.00 35.24 5.69
33 34 4.554036 GGCTAGGCTGGGAAGCGG 62.554 72.222 9.46 0.00 37.11 5.52
34 35 4.554036 GGGCTAGGCTGGGAAGCG 62.554 72.222 16.80 0.00 37.11 4.68
35 36 1.345715 TTAGGGCTAGGCTGGGAAGC 61.346 60.000 16.80 0.00 35.47 3.86
36 37 1.349357 GATTAGGGCTAGGCTGGGAAG 59.651 57.143 16.80 0.00 0.00 3.46
37 38 1.435256 GATTAGGGCTAGGCTGGGAA 58.565 55.000 16.80 5.80 0.00 3.97
38 39 0.832135 CGATTAGGGCTAGGCTGGGA 60.832 60.000 16.80 0.64 0.00 4.37
39 40 0.832135 TCGATTAGGGCTAGGCTGGG 60.832 60.000 16.80 0.63 0.00 4.45
40 41 1.066573 CATCGATTAGGGCTAGGCTGG 60.067 57.143 16.80 0.00 0.00 4.85
41 42 1.066573 CCATCGATTAGGGCTAGGCTG 60.067 57.143 16.80 3.64 0.00 4.85
42 43 1.203187 TCCATCGATTAGGGCTAGGCT 60.203 52.381 16.80 4.94 0.00 4.58
43 44 1.066787 GTCCATCGATTAGGGCTAGGC 60.067 57.143 8.00 8.00 0.00 3.93
44 45 2.494073 GAGTCCATCGATTAGGGCTAGG 59.506 54.545 8.76 0.00 40.63 3.02
45 46 2.494073 GGAGTCCATCGATTAGGGCTAG 59.506 54.545 8.76 0.00 40.63 3.42
46 47 2.526432 GGAGTCCATCGATTAGGGCTA 58.474 52.381 8.76 0.00 40.63 3.93
47 48 1.343069 GGAGTCCATCGATTAGGGCT 58.657 55.000 8.55 8.55 43.93 5.19
48 49 0.038159 CGGAGTCCATCGATTAGGGC 60.038 60.000 10.49 0.00 0.00 5.19
49 50 0.038159 GCGGAGTCCATCGATTAGGG 60.038 60.000 10.49 0.00 0.00 3.53
50 51 0.038159 GGCGGAGTCCATCGATTAGG 60.038 60.000 10.49 0.00 0.00 2.69
51 52 0.673985 TGGCGGAGTCCATCGATTAG 59.326 55.000 10.49 0.00 0.00 1.73
52 53 0.387929 GTGGCGGAGTCCATCGATTA 59.612 55.000 10.49 0.00 36.26 1.75
53 54 1.144057 GTGGCGGAGTCCATCGATT 59.856 57.895 10.49 0.00 36.26 3.34
54 55 2.797278 GGTGGCGGAGTCCATCGAT 61.797 63.158 10.49 0.00 36.26 3.59
55 56 3.458163 GGTGGCGGAGTCCATCGA 61.458 66.667 10.49 0.00 36.26 3.59
56 57 4.530857 GGGTGGCGGAGTCCATCG 62.531 72.222 10.49 0.00 36.04 3.84
57 58 3.399181 TGGGTGGCGGAGTCCATC 61.399 66.667 10.49 0.60 36.26 3.51
58 59 3.717294 GTGGGTGGCGGAGTCCAT 61.717 66.667 10.49 0.00 36.26 3.41
69 70 3.934391 GAGCCTTCGACCGTGGGTG 62.934 68.421 11.68 0.00 35.25 4.61
70 71 3.692406 GAGCCTTCGACCGTGGGT 61.692 66.667 8.09 8.09 39.44 4.51
71 72 3.382832 AGAGCCTTCGACCGTGGG 61.383 66.667 0.00 0.00 0.00 4.61
72 73 2.125912 CAGAGCCTTCGACCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
73 74 2.811317 GCAGAGCCTTCGACCGTG 60.811 66.667 0.00 0.00 0.00 4.94
74 75 4.070552 GGCAGAGCCTTCGACCGT 62.071 66.667 0.00 0.00 46.69 4.83
98 99 3.741830 GAGAGCGGGGTAGCAAGGC 62.742 68.421 0.00 0.00 40.15 4.35
99 100 2.501610 GAGAGCGGGGTAGCAAGG 59.498 66.667 0.00 0.00 40.15 3.61
100 101 2.501610 GGAGAGCGGGGTAGCAAG 59.498 66.667 0.00 0.00 40.15 4.01
101 102 3.081409 GGGAGAGCGGGGTAGCAA 61.081 66.667 0.00 0.00 40.15 3.91
103 104 4.862823 AGGGGAGAGCGGGGTAGC 62.863 72.222 0.00 0.00 37.41 3.58
104 105 2.522193 GAGGGGAGAGCGGGGTAG 60.522 72.222 0.00 0.00 0.00 3.18
105 106 4.517934 CGAGGGGAGAGCGGGGTA 62.518 72.222 0.00 0.00 0.00 3.69
109 110 4.824515 AGGTCGAGGGGAGAGCGG 62.825 72.222 0.00 0.00 40.65 5.52
110 111 2.756283 AAGGTCGAGGGGAGAGCG 60.756 66.667 0.00 0.00 40.65 5.03
111 112 2.428085 GGAAGGTCGAGGGGAGAGC 61.428 68.421 0.00 0.00 36.46 4.09
112 113 1.758906 GGGAAGGTCGAGGGGAGAG 60.759 68.421 0.00 0.00 0.00 3.20
113 114 2.363361 GGGAAGGTCGAGGGGAGA 59.637 66.667 0.00 0.00 0.00 3.71
114 115 2.764547 GGGGAAGGTCGAGGGGAG 60.765 72.222 0.00 0.00 0.00 4.30
115 116 4.772231 CGGGGAAGGTCGAGGGGA 62.772 72.222 0.00 0.00 0.00 4.81
116 117 4.772231 TCGGGGAAGGTCGAGGGG 62.772 72.222 0.00 0.00 0.00 4.79
117 118 3.459063 GTCGGGGAAGGTCGAGGG 61.459 72.222 0.00 0.00 36.00 4.30
118 119 3.459063 GGTCGGGGAAGGTCGAGG 61.459 72.222 0.00 0.00 36.00 4.63
119 120 3.823330 CGGTCGGGGAAGGTCGAG 61.823 72.222 0.00 0.00 36.00 4.04
149 150 2.459555 AGATATTTGGCCTTGGGTGG 57.540 50.000 3.32 0.00 0.00 4.61
150 151 3.319122 GCTTAGATATTTGGCCTTGGGTG 59.681 47.826 3.32 0.00 0.00 4.61
151 152 3.566351 GCTTAGATATTTGGCCTTGGGT 58.434 45.455 3.32 0.00 0.00 4.51
152 153 2.893489 GGCTTAGATATTTGGCCTTGGG 59.107 50.000 3.32 0.00 39.68 4.12
153 154 2.893489 GGGCTTAGATATTTGGCCTTGG 59.107 50.000 3.32 0.00 42.14 3.61
154 155 2.893489 GGGGCTTAGATATTTGGCCTTG 59.107 50.000 3.32 0.00 43.52 3.61
155 156 2.158310 GGGGGCTTAGATATTTGGCCTT 60.158 50.000 3.32 0.00 43.52 4.35
156 157 1.429299 GGGGGCTTAGATATTTGGCCT 59.571 52.381 3.32 0.00 43.52 5.19
157 158 1.924731 GGGGGCTTAGATATTTGGCC 58.075 55.000 0.00 0.00 43.32 5.36
173 174 0.038310 GGAACAAGAGGTCAAGGGGG 59.962 60.000 0.00 0.00 0.00 5.40
174 175 0.321653 CGGAACAAGAGGTCAAGGGG 60.322 60.000 0.00 0.00 0.00 4.79
175 176 0.321653 CCGGAACAAGAGGTCAAGGG 60.322 60.000 0.00 0.00 0.00 3.95
176 177 0.396811 ACCGGAACAAGAGGTCAAGG 59.603 55.000 9.46 0.00 31.69 3.61
177 178 2.931320 GCTACCGGAACAAGAGGTCAAG 60.931 54.545 9.46 0.00 39.31 3.02
178 179 1.001633 GCTACCGGAACAAGAGGTCAA 59.998 52.381 9.46 0.00 39.31 3.18
179 180 0.606604 GCTACCGGAACAAGAGGTCA 59.393 55.000 9.46 0.00 39.31 4.02
180 181 0.108281 GGCTACCGGAACAAGAGGTC 60.108 60.000 9.46 0.00 39.31 3.85
181 182 1.551019 GGGCTACCGGAACAAGAGGT 61.551 60.000 9.46 0.00 41.73 3.85
182 183 1.221021 GGGCTACCGGAACAAGAGG 59.779 63.158 9.46 0.00 0.00 3.69
183 184 1.221021 GGGGCTACCGGAACAAGAG 59.779 63.158 9.46 0.00 37.78 2.85
184 185 2.295602 GGGGGCTACCGGAACAAGA 61.296 63.158 9.46 0.00 41.60 3.02
185 186 0.979187 TAGGGGGCTACCGGAACAAG 60.979 60.000 9.46 0.37 41.60 3.16
186 187 1.080722 TAGGGGGCTACCGGAACAA 59.919 57.895 9.46 0.00 41.60 2.83
187 188 1.686800 GTAGGGGGCTACCGGAACA 60.687 63.158 9.46 0.00 41.60 3.18
188 189 1.686800 TGTAGGGGGCTACCGGAAC 60.687 63.158 9.46 0.00 41.60 3.62
189 190 1.686800 GTGTAGGGGGCTACCGGAA 60.687 63.158 9.46 0.00 41.60 4.30
190 191 2.042639 GTGTAGGGGGCTACCGGA 60.043 66.667 9.46 0.00 41.60 5.14
191 192 2.364579 TGTGTAGGGGGCTACCGG 60.365 66.667 0.00 0.00 41.60 5.28
192 193 2.728435 GGTGTGTAGGGGGCTACCG 61.728 68.421 0.00 0.00 41.60 4.02
193 194 2.728435 CGGTGTGTAGGGGGCTACC 61.728 68.421 0.00 0.00 39.11 3.18
194 195 2.728435 CCGGTGTGTAGGGGGCTAC 61.728 68.421 0.00 0.00 0.00 3.58
195 196 2.364579 CCGGTGTGTAGGGGGCTA 60.365 66.667 0.00 0.00 0.00 3.93
198 199 4.404098 GTGCCGGTGTGTAGGGGG 62.404 72.222 1.90 0.00 0.00 5.40
199 200 2.890766 AAGTGCCGGTGTGTAGGGG 61.891 63.158 1.90 0.00 0.00 4.79
200 201 1.671054 CAAGTGCCGGTGTGTAGGG 60.671 63.158 1.90 0.00 0.00 3.53
201 202 2.325082 GCAAGTGCCGGTGTGTAGG 61.325 63.158 1.90 0.00 34.31 3.18
202 203 1.596752 TGCAAGTGCCGGTGTGTAG 60.597 57.895 1.90 0.00 41.18 2.74
203 204 1.890041 GTGCAAGTGCCGGTGTGTA 60.890 57.895 1.90 0.00 41.18 2.90
204 205 3.209097 GTGCAAGTGCCGGTGTGT 61.209 61.111 1.90 0.00 41.18 3.72
205 206 2.554636 ATGTGCAAGTGCCGGTGTG 61.555 57.895 1.90 0.00 41.18 3.82
206 207 2.203337 ATGTGCAAGTGCCGGTGT 60.203 55.556 1.90 0.00 41.18 4.16
207 208 2.074230 AACATGTGCAAGTGCCGGTG 62.074 55.000 1.90 0.00 41.18 4.94
208 209 0.536233 TAACATGTGCAAGTGCCGGT 60.536 50.000 1.90 0.00 41.18 5.28
209 210 0.595588 TTAACATGTGCAAGTGCCGG 59.404 50.000 0.00 0.00 41.18 6.13
210 211 1.665735 GGTTAACATGTGCAAGTGCCG 60.666 52.381 8.10 0.00 41.18 5.69
211 212 1.613437 AGGTTAACATGTGCAAGTGCC 59.387 47.619 8.10 0.00 41.18 5.01
212 213 3.004734 AGAAGGTTAACATGTGCAAGTGC 59.995 43.478 8.10 0.00 42.50 4.40
213 214 4.836125 AGAAGGTTAACATGTGCAAGTG 57.164 40.909 8.10 0.00 0.00 3.16
214 215 4.278419 GGAAGAAGGTTAACATGTGCAAGT 59.722 41.667 8.10 0.00 0.00 3.16
215 216 4.520492 AGGAAGAAGGTTAACATGTGCAAG 59.480 41.667 8.10 0.00 0.00 4.01
216 217 4.469657 AGGAAGAAGGTTAACATGTGCAA 58.530 39.130 8.10 0.00 0.00 4.08
217 218 4.072131 GAGGAAGAAGGTTAACATGTGCA 58.928 43.478 8.10 0.00 0.00 4.57
218 219 3.125316 CGAGGAAGAAGGTTAACATGTGC 59.875 47.826 8.10 0.00 0.00 4.57
219 220 3.684788 CCGAGGAAGAAGGTTAACATGTG 59.315 47.826 8.10 0.00 0.00 3.21
220 221 3.868754 GCCGAGGAAGAAGGTTAACATGT 60.869 47.826 8.10 0.00 0.00 3.21
221 222 2.678336 GCCGAGGAAGAAGGTTAACATG 59.322 50.000 8.10 0.00 0.00 3.21
222 223 2.572104 AGCCGAGGAAGAAGGTTAACAT 59.428 45.455 8.10 0.00 0.00 2.71
223 224 1.975680 AGCCGAGGAAGAAGGTTAACA 59.024 47.619 8.10 0.00 0.00 2.41
224 225 2.619147 GAGCCGAGGAAGAAGGTTAAC 58.381 52.381 0.00 0.00 0.00 2.01
225 226 1.553704 GGAGCCGAGGAAGAAGGTTAA 59.446 52.381 0.00 0.00 0.00 2.01
226 227 1.192428 GGAGCCGAGGAAGAAGGTTA 58.808 55.000 0.00 0.00 0.00 2.85
227 228 0.836400 TGGAGCCGAGGAAGAAGGTT 60.836 55.000 0.00 0.00 0.00 3.50
228 229 0.836400 TTGGAGCCGAGGAAGAAGGT 60.836 55.000 0.00 0.00 0.00 3.50
229 230 0.391793 GTTGGAGCCGAGGAAGAAGG 60.392 60.000 0.00 0.00 0.00 3.46
230 231 0.610687 AGTTGGAGCCGAGGAAGAAG 59.389 55.000 0.00 0.00 0.00 2.85
231 232 0.321671 CAGTTGGAGCCGAGGAAGAA 59.678 55.000 0.00 0.00 0.00 2.52
232 233 1.975327 CAGTTGGAGCCGAGGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
233 234 1.743252 GCAGTTGGAGCCGAGGAAG 60.743 63.158 0.00 0.00 0.00 3.46
234 235 2.050836 TTGCAGTTGGAGCCGAGGAA 62.051 55.000 0.00 0.00 0.00 3.36
235 236 2.515979 TTGCAGTTGGAGCCGAGGA 61.516 57.895 0.00 0.00 0.00 3.71
236 237 2.032528 TTGCAGTTGGAGCCGAGG 59.967 61.111 0.00 0.00 0.00 4.63
237 238 2.671177 CGTTGCAGTTGGAGCCGAG 61.671 63.158 0.00 0.00 0.00 4.63
238 239 2.664851 CGTTGCAGTTGGAGCCGA 60.665 61.111 0.00 0.00 0.00 5.54
239 240 4.389576 GCGTTGCAGTTGGAGCCG 62.390 66.667 0.00 0.00 0.00 5.52
240 241 4.043200 GGCGTTGCAGTTGGAGCC 62.043 66.667 0.00 0.00 37.61 4.70
241 242 4.389576 CGGCGTTGCAGTTGGAGC 62.390 66.667 0.00 0.00 0.00 4.70
242 243 4.389576 GCGGCGTTGCAGTTGGAG 62.390 66.667 9.37 0.00 34.15 3.86
259 260 4.724697 CAACGACGCAGCAAGCCG 62.725 66.667 0.00 0.00 41.38 5.52
273 274 1.243902 TTCTGACCAAATCCGGCAAC 58.756 50.000 0.00 0.00 0.00 4.17
274 275 1.988293 TTTCTGACCAAATCCGGCAA 58.012 45.000 0.00 0.00 0.00 4.52
275 276 1.988293 TTTTCTGACCAAATCCGGCA 58.012 45.000 0.00 0.00 0.00 5.69
276 277 3.694566 ACTATTTTCTGACCAAATCCGGC 59.305 43.478 0.00 0.00 0.00 6.13
277 278 4.096382 CCACTATTTTCTGACCAAATCCGG 59.904 45.833 0.00 0.00 0.00 5.14
278 279 4.096382 CCCACTATTTTCTGACCAAATCCG 59.904 45.833 0.00 0.00 0.00 4.18
279 280 5.016831 ACCCACTATTTTCTGACCAAATCC 58.983 41.667 0.00 0.00 0.00 3.01
280 281 5.710099 TGACCCACTATTTTCTGACCAAATC 59.290 40.000 0.00 0.00 0.00 2.17
281 282 5.640147 TGACCCACTATTTTCTGACCAAAT 58.360 37.500 0.00 0.00 0.00 2.32
282 283 5.055265 TGACCCACTATTTTCTGACCAAA 57.945 39.130 0.00 0.00 0.00 3.28
283 284 4.715534 TGACCCACTATTTTCTGACCAA 57.284 40.909 0.00 0.00 0.00 3.67
284 285 4.288366 TCATGACCCACTATTTTCTGACCA 59.712 41.667 0.00 0.00 0.00 4.02
285 286 4.843728 TCATGACCCACTATTTTCTGACC 58.156 43.478 0.00 0.00 0.00 4.02
286 287 7.396540 AAATCATGACCCACTATTTTCTGAC 57.603 36.000 0.00 0.00 0.00 3.51
287 288 8.421249 AAAAATCATGACCCACTATTTTCTGA 57.579 30.769 0.00 0.00 30.61 3.27
309 310 9.762381 AATATGATTGACCCCACTTACTAAAAA 57.238 29.630 0.00 0.00 0.00 1.94
310 311 9.762381 AAATATGATTGACCCCACTTACTAAAA 57.238 29.630 0.00 0.00 0.00 1.52
311 312 9.762381 AAAATATGATTGACCCCACTTACTAAA 57.238 29.630 0.00 0.00 0.00 1.85
312 313 9.762381 AAAAATATGATTGACCCCACTTACTAA 57.238 29.630 0.00 0.00 0.00 2.24
346 347 9.931210 CTTCACAAAAGAGTAAACGATTAACTT 57.069 29.630 0.00 0.00 0.00 2.66
347 348 9.321562 TCTTCACAAAAGAGTAAACGATTAACT 57.678 29.630 0.00 0.00 0.00 2.24
348 349 9.925268 TTCTTCACAAAAGAGTAAACGATTAAC 57.075 29.630 0.00 0.00 0.00 2.01
350 351 9.321562 ACTTCTTCACAAAAGAGTAAACGATTA 57.678 29.630 0.00 0.00 0.00 1.75
351 352 8.209917 ACTTCTTCACAAAAGAGTAAACGATT 57.790 30.769 0.00 0.00 0.00 3.34
352 353 7.787725 ACTTCTTCACAAAAGAGTAAACGAT 57.212 32.000 0.00 0.00 0.00 3.73
353 354 7.605410 AACTTCTTCACAAAAGAGTAAACGA 57.395 32.000 0.00 0.00 0.00 3.85
354 355 9.931210 ATTAACTTCTTCACAAAAGAGTAAACG 57.069 29.630 0.00 0.00 0.00 3.60
405 406 3.740115 AGCATCGCCCGTAGATATTTTT 58.260 40.909 0.00 0.00 0.00 1.94
406 407 3.326747 GAGCATCGCCCGTAGATATTTT 58.673 45.455 0.00 0.00 0.00 1.82
407 408 2.353803 GGAGCATCGCCCGTAGATATTT 60.354 50.000 0.00 0.00 34.37 1.40
408 409 1.204941 GGAGCATCGCCCGTAGATATT 59.795 52.381 0.00 0.00 34.37 1.28
409 410 0.818296 GGAGCATCGCCCGTAGATAT 59.182 55.000 0.00 0.00 34.37 1.63
410 411 0.538746 TGGAGCATCGCCCGTAGATA 60.539 55.000 0.00 0.00 34.37 1.98
411 412 1.188219 ATGGAGCATCGCCCGTAGAT 61.188 55.000 0.00 0.00 34.37 1.98
412 413 1.399744 AATGGAGCATCGCCCGTAGA 61.400 55.000 0.00 0.00 34.37 2.59
413 414 0.317160 TAATGGAGCATCGCCCGTAG 59.683 55.000 0.00 0.00 34.37 3.51
414 415 0.317160 CTAATGGAGCATCGCCCGTA 59.683 55.000 0.00 0.00 34.37 4.02
415 416 1.069765 CTAATGGAGCATCGCCCGT 59.930 57.895 0.00 0.00 34.37 5.28
416 417 0.946221 GACTAATGGAGCATCGCCCG 60.946 60.000 0.00 0.00 34.37 6.13
417 418 0.603975 GGACTAATGGAGCATCGCCC 60.604 60.000 0.00 0.00 34.37 6.13
418 419 0.603975 GGGACTAATGGAGCATCGCC 60.604 60.000 0.00 0.00 34.37 5.54
419 420 0.603975 GGGGACTAATGGAGCATCGC 60.604 60.000 0.00 0.00 34.37 4.58
420 421 0.319900 CGGGGACTAATGGAGCATCG 60.320 60.000 0.00 0.00 34.37 3.84
421 422 0.603975 GCGGGGACTAATGGAGCATC 60.604 60.000 0.00 0.00 0.00 3.91
422 423 1.056700 AGCGGGGACTAATGGAGCAT 61.057 55.000 0.00 0.00 0.00 3.79
423 424 0.397957 TAGCGGGGACTAATGGAGCA 60.398 55.000 0.00 0.00 0.00 4.26
424 425 0.033642 GTAGCGGGGACTAATGGAGC 59.966 60.000 0.00 0.00 0.00 4.70
425 426 1.410004 TGTAGCGGGGACTAATGGAG 58.590 55.000 0.00 0.00 0.00 3.86
426 427 1.691976 CATGTAGCGGGGACTAATGGA 59.308 52.381 0.00 0.00 0.00 3.41
427 428 1.878102 GCATGTAGCGGGGACTAATGG 60.878 57.143 0.00 0.00 0.00 3.16
428 429 1.512926 GCATGTAGCGGGGACTAATG 58.487 55.000 0.00 0.00 0.00 1.90
441 442 0.533491 GTGTACCACTCCCGCATGTA 59.467 55.000 0.00 0.00 0.00 2.29
443 444 1.809619 CGTGTACCACTCCCGCATG 60.810 63.158 0.00 0.00 31.34 4.06
461 462 1.079750 GACGAACCAGTGAGCTCCC 60.080 63.158 12.15 0.00 0.00 4.30
559 563 1.135046 CATGCGTCGATCCATGTCTC 58.865 55.000 15.92 0.00 35.33 3.36
560 564 0.877649 GCATGCGTCGATCCATGTCT 60.878 55.000 21.62 0.00 40.63 3.41
669 678 3.458487 TCTTCTTATAGGGTTTGGGAGGC 59.542 47.826 0.00 0.00 0.00 4.70
700 709 1.069838 CGGATCGGTCGATACAGACTG 60.070 57.143 14.86 0.00 46.14 3.51
701 710 1.227639 CGGATCGGTCGATACAGACT 58.772 55.000 14.86 0.00 40.76 3.24
702 711 0.385723 GCGGATCGGTCGATACAGAC 60.386 60.000 14.86 1.38 35.23 3.51
703 712 1.512996 GGCGGATCGGTCGATACAGA 61.513 60.000 14.86 0.00 35.23 3.41
704 713 1.081376 GGCGGATCGGTCGATACAG 60.081 63.158 14.86 9.01 35.23 2.74
705 714 1.176619 ATGGCGGATCGGTCGATACA 61.177 55.000 14.86 8.56 35.23 2.29
706 715 0.732880 CATGGCGGATCGGTCGATAC 60.733 60.000 5.81 5.68 34.60 2.24
707 716 1.584495 CATGGCGGATCGGTCGATA 59.416 57.895 5.81 0.00 34.60 2.92
708 717 2.340078 CATGGCGGATCGGTCGAT 59.660 61.111 5.49 5.49 37.59 3.59
709 718 4.585526 GCATGGCGGATCGGTCGA 62.586 66.667 0.08 0.00 0.00 4.20
710 719 4.889856 TGCATGGCGGATCGGTCG 62.890 66.667 0.08 0.00 0.00 4.79
711 720 2.281070 ATGCATGGCGGATCGGTC 60.281 61.111 0.00 0.00 0.00 4.79
712 721 2.592574 CATGCATGGCGGATCGGT 60.593 61.111 19.40 0.00 0.00 4.69
713 722 4.034258 GCATGCATGGCGGATCGG 62.034 66.667 27.34 0.00 0.00 4.18
714 723 2.962827 GAGCATGCATGGCGGATCG 61.963 63.158 27.34 0.11 36.08 3.69
734 743 7.566709 GCTGATCACCTTAACAAAAACAAATG 58.433 34.615 0.00 0.00 0.00 2.32
738 747 4.791411 GCGCTGATCACCTTAACAAAAACA 60.791 41.667 0.00 0.00 0.00 2.83
742 751 1.463056 CGCGCTGATCACCTTAACAAA 59.537 47.619 5.56 0.00 0.00 2.83
766 775 1.177401 TCGATCCACACTGAGACTGG 58.823 55.000 0.00 0.00 0.00 4.00
769 778 1.268794 CCGATCGATCCACACTGAGAC 60.269 57.143 18.66 0.00 0.00 3.36
821 838 1.209640 GCGATCCTCCGGTATCGAC 59.790 63.158 28.20 19.45 46.08 4.20
822 839 1.970114 GGCGATCCTCCGGTATCGA 60.970 63.158 28.20 11.41 46.08 3.59
823 840 2.567049 GGCGATCCTCCGGTATCG 59.433 66.667 23.14 23.14 45.96 2.92
851 868 4.985409 CGATCCTTTATTCTTCTTCTCCGG 59.015 45.833 0.00 0.00 0.00 5.14
918 935 2.286833 CGCATAAAAATCCACGATCGGT 59.713 45.455 20.98 1.94 0.00 4.69
926 943 4.201910 GCAGTAGAAGCGCATAAAAATCCA 60.202 41.667 11.47 0.00 0.00 3.41
1025 1042 3.169924 GCGCGACGACGACAATGA 61.170 61.111 12.10 0.00 42.66 2.57
1076 1093 2.943978 AAGGTCAGGTTCTCGGCCG 61.944 63.158 22.12 22.12 0.00 6.13
1077 1094 1.376037 CAAGGTCAGGTTCTCGGCC 60.376 63.158 0.00 0.00 0.00 6.13
1079 1096 1.376037 GCCAAGGTCAGGTTCTCGG 60.376 63.158 0.00 0.00 0.00 4.63
1081 1098 2.035442 GCGCCAAGGTCAGGTTCTC 61.035 63.158 0.00 0.00 0.00 2.87
1082 1099 2.032681 GCGCCAAGGTCAGGTTCT 59.967 61.111 0.00 0.00 0.00 3.01
1083 1100 3.423154 CGCGCCAAGGTCAGGTTC 61.423 66.667 0.00 0.00 0.00 3.62
1099 1116 2.907897 GATGACGAGGGGAACAGCCG 62.908 65.000 0.00 0.00 37.63 5.52
1100 1117 1.153349 GATGACGAGGGGAACAGCC 60.153 63.158 0.00 0.00 0.00 4.85
1101 1118 1.519455 CGATGACGAGGGGAACAGC 60.519 63.158 0.00 0.00 42.66 4.40
1102 1119 1.100510 TACGATGACGAGGGGAACAG 58.899 55.000 0.00 0.00 42.66 3.16
1103 1120 0.813184 GTACGATGACGAGGGGAACA 59.187 55.000 0.00 0.00 42.66 3.18
1104 1121 0.101939 GGTACGATGACGAGGGGAAC 59.898 60.000 0.00 0.00 42.66 3.62
1105 1122 0.323633 TGGTACGATGACGAGGGGAA 60.324 55.000 0.00 0.00 42.66 3.97
1106 1123 1.033746 GTGGTACGATGACGAGGGGA 61.034 60.000 0.00 0.00 42.66 4.81
1107 1124 1.436336 GTGGTACGATGACGAGGGG 59.564 63.158 0.00 0.00 42.66 4.79
1108 1125 1.063649 CGTGGTACGATGACGAGGG 59.936 63.158 0.00 0.00 46.05 4.30
1109 1126 1.063649 CCGTGGTACGATGACGAGG 59.936 63.158 2.52 0.00 46.05 4.63
1110 1127 1.585521 GCCGTGGTACGATGACGAG 60.586 63.158 2.52 0.00 46.05 4.18
1111 1128 2.486504 GCCGTGGTACGATGACGA 59.513 61.111 2.52 0.00 46.05 4.20
1112 1129 2.947621 CGCCGTGGTACGATGACG 60.948 66.667 2.52 0.00 46.05 4.35
1113 1130 3.252484 GCGCCGTGGTACGATGAC 61.252 66.667 0.00 0.00 46.05 3.06
1114 1131 3.693382 CTGCGCCGTGGTACGATGA 62.693 63.158 4.18 0.00 46.05 2.92
1115 1132 3.254654 CTGCGCCGTGGTACGATG 61.255 66.667 4.18 0.00 46.05 3.84
1130 1147 3.583276 TTGTAGGTGACCGCCGCTG 62.583 63.158 0.00 0.00 0.00 5.18
1131 1148 3.307906 TTGTAGGTGACCGCCGCT 61.308 61.111 0.00 0.00 0.00 5.52
1203 1220 4.129380 CGAGATCCCAACTGAAATGCATA 58.871 43.478 0.00 0.00 0.00 3.14
1204 1221 2.947652 CGAGATCCCAACTGAAATGCAT 59.052 45.455 0.00 0.00 0.00 3.96
1205 1222 2.290260 ACGAGATCCCAACTGAAATGCA 60.290 45.455 0.00 0.00 0.00 3.96
1206 1223 2.359900 ACGAGATCCCAACTGAAATGC 58.640 47.619 0.00 0.00 0.00 3.56
1210 1227 2.163010 GACGTACGAGATCCCAACTGAA 59.837 50.000 24.41 0.00 0.00 3.02
1215 1232 1.430632 GCGACGTACGAGATCCCAA 59.569 57.895 24.41 0.00 45.77 4.12
1216 1233 2.816360 CGCGACGTACGAGATCCCA 61.816 63.158 24.41 0.00 44.01 4.37
1217 1234 2.052414 CGCGACGTACGAGATCCC 60.052 66.667 24.41 0.29 44.01 3.85
1257 1275 2.736682 GGCGACCACAAACGGATCG 61.737 63.158 0.00 0.00 35.91 3.69
1262 1280 4.659874 GCACGGCGACCACAAACG 62.660 66.667 16.62 0.00 0.00 3.60
1270 1288 2.296692 CTGCATGTAAGCACGGCGAC 62.297 60.000 16.62 5.01 40.11 5.19
1277 1295 0.392327 TTAGCGCCTGCATGTAAGCA 60.392 50.000 2.29 0.00 46.23 3.91
1404 1426 0.474660 AGCAAGAAGGTGAGGGAGGT 60.475 55.000 0.00 0.00 0.00 3.85
1448 1470 0.945265 GTACGCCGCCAACACAACTA 60.945 55.000 0.00 0.00 0.00 2.24
1508 1534 2.132996 CCCTCTGCTCTCTCGCCAT 61.133 63.158 0.00 0.00 0.00 4.40
1509 1535 2.757508 CCCTCTGCTCTCTCGCCA 60.758 66.667 0.00 0.00 0.00 5.69
1510 1536 3.535962 CCCCTCTGCTCTCTCGCC 61.536 72.222 0.00 0.00 0.00 5.54
1512 1538 2.441901 AGCCCCTCTGCTCTCTCG 60.442 66.667 0.00 0.00 36.75 4.04
1519 1545 0.529378 CACAAAATGAGCCCCTCTGC 59.471 55.000 0.00 0.00 0.00 4.26
1520 1546 1.542915 CACACAAAATGAGCCCCTCTG 59.457 52.381 0.00 0.00 0.00 3.35
1521 1547 1.915141 CACACAAAATGAGCCCCTCT 58.085 50.000 0.00 0.00 0.00 3.69
1522 1548 0.244721 GCACACAAAATGAGCCCCTC 59.755 55.000 0.00 0.00 38.85 4.30
1523 1549 0.469705 TGCACACAAAATGAGCCCCT 60.470 50.000 0.00 0.00 43.67 4.79
1524 1550 0.609662 ATGCACACAAAATGAGCCCC 59.390 50.000 0.00 0.00 43.67 5.80
1525 1551 1.717194 CATGCACACAAAATGAGCCC 58.283 50.000 0.00 0.00 43.67 5.19
1526 1552 1.073177 GCATGCACACAAAATGAGCC 58.927 50.000 14.21 0.00 43.67 4.70
1528 1554 2.333926 CCTGCATGCACACAAAATGAG 58.666 47.619 18.46 2.50 0.00 2.90
1529 1555 1.001068 CCCTGCATGCACACAAAATGA 59.999 47.619 18.46 0.00 0.00 2.57
1530 1556 1.434555 CCCTGCATGCACACAAAATG 58.565 50.000 18.46 4.12 0.00 2.32
1531 1557 0.322322 CCCCTGCATGCACACAAAAT 59.678 50.000 18.46 0.00 0.00 1.82
1532 1558 0.758310 TCCCCTGCATGCACACAAAA 60.758 50.000 18.46 0.00 0.00 2.44
1533 1559 1.152589 TCCCCTGCATGCACACAAA 60.153 52.632 18.46 0.00 0.00 2.83
1562 1595 3.893763 CGGCTCAGATCCGTCGCT 61.894 66.667 4.41 0.00 41.85 4.93
1730 1763 3.074094 AGATGAGATTGGATGGATGGGTG 59.926 47.826 0.00 0.00 0.00 4.61
1735 1768 2.353505 CGCGAGATGAGATTGGATGGAT 60.354 50.000 0.00 0.00 0.00 3.41
1739 1772 0.678395 AGCGCGAGATGAGATTGGAT 59.322 50.000 12.10 0.00 0.00 3.41
1740 1773 0.031314 GAGCGCGAGATGAGATTGGA 59.969 55.000 12.10 0.00 0.00 3.53
1741 1774 1.274126 CGAGCGCGAGATGAGATTGG 61.274 60.000 12.10 0.00 40.82 3.16
1743 1776 2.025719 TCGAGCGCGAGATGAGATT 58.974 52.632 12.10 0.00 42.51 2.40
1755 1788 2.566036 GAGTTAGTGATCGATCGAGCG 58.434 52.381 26.34 18.51 32.52 5.03
1756 1789 2.221286 TCGAGTTAGTGATCGATCGAGC 59.779 50.000 25.65 25.65 42.61 5.03
1767 1800 2.942710 ACGTGTTGGATCGAGTTAGTG 58.057 47.619 0.00 0.00 0.00 2.74
1774 1807 0.109643 CACCGTACGTGTTGGATCGA 60.110 55.000 15.21 0.00 37.73 3.59
1778 1811 1.300311 CTGCACCGTACGTGTTGGA 60.300 57.895 15.21 8.49 44.97 3.53
1779 1812 1.282248 CTCTGCACCGTACGTGTTGG 61.282 60.000 15.21 0.00 44.97 3.77
1783 1816 3.172575 CGCTCTGCACCGTACGTG 61.173 66.667 15.21 13.20 46.03 4.49
1817 2100 0.105964 CCTTCACCACCGTGTTCTCA 59.894 55.000 0.00 0.00 41.09 3.27
1865 2148 4.967271 TGCAGCAGCGCGAAGTGA 62.967 61.111 12.10 0.00 46.23 3.41
2075 2358 4.758251 CCCACGCTCATGCCGTGA 62.758 66.667 28.50 1.68 42.09 4.35
2159 2442 3.575247 ACCCCGTTCATGGTGCCA 61.575 61.111 0.00 0.00 32.36 4.92
2241 2524 0.107643 TGCACGTCCTTCATCACCAA 59.892 50.000 0.00 0.00 0.00 3.67
2421 2711 2.888863 GAGGTCCTGGAGCACGAG 59.111 66.667 26.19 0.00 31.89 4.18
2581 2871 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2584 2874 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2587 2877 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2590 2880 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2593 2883 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
2596 2886 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
2599 2889 1.290732 AGAAGAAGGAGGAGGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
2602 2892 3.680777 ACTAGAAGAAGGAGGAGGAGG 57.319 52.381 0.00 0.00 0.00 4.30
2605 2895 5.746990 TCAAAACTAGAAGAAGGAGGAGG 57.253 43.478 0.00 0.00 0.00 4.30
2608 2898 6.241645 ACCAATCAAAACTAGAAGAAGGAGG 58.758 40.000 0.00 0.00 0.00 4.30
2609 2899 7.445402 TCAACCAATCAAAACTAGAAGAAGGAG 59.555 37.037 0.00 0.00 0.00 3.69
2610 2900 7.287061 TCAACCAATCAAAACTAGAAGAAGGA 58.713 34.615 0.00 0.00 0.00 3.36
2611 2901 7.510549 TCAACCAATCAAAACTAGAAGAAGG 57.489 36.000 0.00 0.00 0.00 3.46
2654 2944 3.498082 AGCAACAACAAGAAACAACGAC 58.502 40.909 0.00 0.00 0.00 4.34
2655 2945 3.840890 AGCAACAACAAGAAACAACGA 57.159 38.095 0.00 0.00 0.00 3.85
2656 2946 5.328691 TCTAAGCAACAACAAGAAACAACG 58.671 37.500 0.00 0.00 0.00 4.10
2671 2961 9.581099 AAAAAGAAAACGAAATCTTCTAAGCAA 57.419 25.926 0.00 0.00 34.90 3.91
2755 3051 6.866770 TGTACAAAGCTTGCTACTACTACTTG 59.133 38.462 0.00 0.00 0.00 3.16
2788 3084 3.738282 CAGAGCCGAGCAGTATTATTCAC 59.262 47.826 0.00 0.00 0.00 3.18
2817 3113 3.306156 GCTAGGCTAGGCACTGGTATAAC 60.306 52.174 22.40 0.00 41.52 1.89
2863 3159 2.280628 GAGAGTTTAGTGGCGAATGGG 58.719 52.381 0.00 0.00 0.00 4.00
2871 3167 3.849911 TCATCTTGCGAGAGTTTAGTGG 58.150 45.455 10.06 0.00 34.85 4.00
2876 3172 2.072298 GTGCTCATCTTGCGAGAGTTT 58.928 47.619 10.06 0.00 34.85 2.66
2934 3230 2.115595 GTGACTCGATCGCTCATGAAG 58.884 52.381 11.09 3.00 34.76 3.02
3001 3299 0.541764 GAAATGACTGTGGGGGCCAA 60.542 55.000 4.39 0.00 34.18 4.52
3002 3300 1.076549 GAAATGACTGTGGGGGCCA 59.923 57.895 4.39 0.00 0.00 5.36
3005 3303 2.234414 CCAAATGAAATGACTGTGGGGG 59.766 50.000 0.00 0.00 0.00 5.40
3006 3304 2.354003 GCCAAATGAAATGACTGTGGGG 60.354 50.000 0.00 0.00 0.00 4.96
3019 3317 6.352016 TGCATAAAACTAAAGGCCAAATGA 57.648 33.333 5.01 0.00 0.00 2.57
3033 3331 0.175531 AGGGCCGCATTGCATAAAAC 59.824 50.000 9.69 0.00 0.00 2.43
3117 3416 1.608046 GGGATTTGGCCCGTTTGGA 60.608 57.895 0.00 0.00 38.58 3.53
3181 3480 2.360726 TCGAGCTAGGTGACGGCA 60.361 61.111 0.00 0.00 36.64 5.69
3214 3513 2.029666 CTATTCTCCGGCCGCCAG 59.970 66.667 22.85 17.96 0.00 4.85
3239 3538 2.176273 CCGCTGGGAAGAAGATGCG 61.176 63.158 0.00 0.00 42.52 4.73
3283 3582 0.108138 GATCCACCTTCGGACACTGG 60.108 60.000 0.00 0.00 38.07 4.00
3292 3591 0.442699 GAACGCAACGATCCACCTTC 59.557 55.000 0.00 0.00 0.00 3.46
3324 3623 0.103208 CTCCAGCCGGTACATGTCTC 59.897 60.000 0.00 0.00 0.00 3.36
3364 3663 2.171448 CTCTTGCCCTATACCAAGCAGT 59.829 50.000 0.00 0.00 38.59 4.40
3375 3674 1.765314 GAAGCTGATCCTCTTGCCCTA 59.235 52.381 0.00 0.00 0.00 3.53
3378 3677 0.465278 GGGAAGCTGATCCTCTTGCC 60.465 60.000 15.30 15.30 42.17 4.52
3422 3721 4.474113 GTTATCTCTAATAGTGTCGCCGG 58.526 47.826 0.00 0.00 0.00 6.13
3446 3745 7.759489 TCAAAAATTGTACATGAACCTAGCT 57.241 32.000 0.00 0.00 0.00 3.32
3467 3766 6.384258 TCACGAACCAATTTGAGAATTCAA 57.616 33.333 8.44 0.00 41.44 2.69
3471 3770 9.927668 ATTTTATTCACGAACCAATTTGAGAAT 57.072 25.926 0.00 5.60 40.54 2.40
3472 3771 9.190858 CATTTTATTCACGAACCAATTTGAGAA 57.809 29.630 0.00 0.00 34.50 2.87
3484 3783 4.279671 ACCACTTGCCATTTTATTCACGAA 59.720 37.500 0.00 0.00 0.00 3.85
3485 3784 3.823873 ACCACTTGCCATTTTATTCACGA 59.176 39.130 0.00 0.00 0.00 4.35
3510 3809 4.164981 TCAGGTGGGACTAAGCTTTAGAA 58.835 43.478 3.20 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.