Multiple sequence alignment - TraesCS5A01G468500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G468500 chr5A 100.000 2642 0 0 1 2642 645975978 645978619 0.000000e+00 4879
1 TraesCS5A01G468500 chr5D 88.519 1533 126 26 1133 2641 519408087 519409593 0.000000e+00 1810
2 TraesCS5A01G468500 chr5D 90.995 744 46 10 388 1126 519406990 519407717 0.000000e+00 983
3 TraesCS5A01G468500 chr5B 91.848 736 31 11 1927 2642 653782948 653783674 0.000000e+00 1000
4 TraesCS5A01G468500 chr5B 87.042 710 76 5 1124 1831 653782235 653782930 0.000000e+00 787
5 TraesCS5A01G468500 chr5B 84.419 353 21 11 484 832 653781670 653781992 1.530000e-82 316
6 TraesCS5A01G468500 chr5B 88.837 215 24 0 1112 1326 653782013 653782227 5.610000e-67 265
7 TraesCS5A01G468500 chr5B 83.654 208 22 1 1119 1326 653782131 653782326 4.490000e-43 185
8 TraesCS5A01G468500 chr5B 92.079 101 5 2 388 487 653742610 653742708 3.550000e-29 139
9 TraesCS5A01G468500 chr4D 93.706 286 17 1 111 396 415104269 415103985 6.760000e-116 427
10 TraesCS5A01G468500 chr4D 93.662 284 17 1 108 391 504259619 504259337 8.740000e-115 424
11 TraesCS5A01G468500 chr6A 93.403 288 17 2 110 396 409000701 409000415 2.430000e-115 425
12 TraesCS5A01G468500 chr3A 94.545 275 15 0 114 388 388649822 388649548 2.430000e-115 425
13 TraesCS5A01G468500 chr7D 93.907 279 17 0 112 390 269986107 269985829 3.140000e-114 422
14 TraesCS5A01G468500 chr7A 93.907 279 17 0 112 390 399854129 399853851 3.140000e-114 422
15 TraesCS5A01G468500 chr6D 93.907 279 17 0 112 390 394325579 394325857 3.140000e-114 422
16 TraesCS5A01G468500 chr6D 92.734 289 21 0 106 394 285312599 285312887 4.070000e-113 418
17 TraesCS5A01G468500 chr3D 93.907 279 17 0 112 390 48940560 48940282 3.140000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G468500 chr5A 645975978 645978619 2641 False 4879.0 4879 100.000 1 2642 1 chr5A.!!$F1 2641
1 TraesCS5A01G468500 chr5D 519406990 519409593 2603 False 1396.5 1810 89.757 388 2641 2 chr5D.!!$F1 2253
2 TraesCS5A01G468500 chr5B 653781670 653783674 2004 False 510.6 1000 87.160 484 2642 5 chr5B.!!$F2 2158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.035458 GTGTCAGCAGGCTAGTGGTT 59.965 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2641 0.109132 GTTTGGATTTCTGCTGCCGG 60.109 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.766691 GGTCGGGCTTCGCTGGTA 61.767 66.667 0.00 0.00 39.05 3.25
31 32 2.508663 GTCGGGCTTCGCTGGTAC 60.509 66.667 0.00 0.00 39.05 3.34
32 33 3.766691 TCGGGCTTCGCTGGTACC 61.767 66.667 4.43 4.43 39.05 3.34
33 34 3.771160 CGGGCTTCGCTGGTACCT 61.771 66.667 14.36 0.00 0.00 3.08
34 35 2.420568 CGGGCTTCGCTGGTACCTA 61.421 63.158 14.36 0.00 0.00 3.08
35 36 1.143401 GGGCTTCGCTGGTACCTAC 59.857 63.158 14.36 3.97 0.00 3.18
36 37 1.226888 GGCTTCGCTGGTACCTACG 60.227 63.158 14.36 16.35 0.00 3.51
37 38 1.509923 GCTTCGCTGGTACCTACGT 59.490 57.895 21.33 0.00 0.00 3.57
38 39 0.801067 GCTTCGCTGGTACCTACGTG 60.801 60.000 21.33 17.00 0.00 4.49
39 40 0.801067 CTTCGCTGGTACCTACGTGC 60.801 60.000 21.33 13.13 0.00 5.34
40 41 2.531927 TTCGCTGGTACCTACGTGCG 62.532 60.000 21.33 21.31 44.05 5.34
41 42 2.570181 GCTGGTACCTACGTGCGT 59.430 61.111 14.36 2.05 0.00 5.24
42 43 1.080298 GCTGGTACCTACGTGCGTT 60.080 57.895 14.36 0.00 0.00 4.84
43 44 1.074872 GCTGGTACCTACGTGCGTTC 61.075 60.000 14.36 0.00 0.00 3.95
44 45 0.241749 CTGGTACCTACGTGCGTTCA 59.758 55.000 14.36 0.00 0.00 3.18
45 46 0.039256 TGGTACCTACGTGCGTTCAC 60.039 55.000 14.36 0.00 39.78 3.18
64 65 3.704381 GGCTAGTGAGACGTGTCAG 57.296 57.895 16.67 5.85 0.00 3.51
65 66 0.456995 GGCTAGTGAGACGTGTCAGC 60.457 60.000 16.67 15.49 0.00 4.26
66 67 0.241213 GCTAGTGAGACGTGTCAGCA 59.759 55.000 16.67 5.84 0.00 4.41
67 68 1.730772 GCTAGTGAGACGTGTCAGCAG 60.731 57.143 16.67 15.93 0.00 4.24
68 69 0.881796 TAGTGAGACGTGTCAGCAGG 59.118 55.000 16.67 0.00 36.63 4.85
69 70 2.024319 GTGAGACGTGTCAGCAGGC 61.024 63.158 16.67 0.00 34.13 4.85
70 71 2.203082 TGAGACGTGTCAGCAGGCT 61.203 57.895 11.94 0.00 34.13 4.58
71 72 0.893727 TGAGACGTGTCAGCAGGCTA 60.894 55.000 11.94 0.00 34.13 3.93
72 73 0.179150 GAGACGTGTCAGCAGGCTAG 60.179 60.000 8.00 0.00 34.13 3.42
73 74 0.896019 AGACGTGTCAGCAGGCTAGT 60.896 55.000 0.00 0.00 34.13 2.57
74 75 0.734253 GACGTGTCAGCAGGCTAGTG 60.734 60.000 0.00 0.00 34.13 2.74
75 76 1.446792 CGTGTCAGCAGGCTAGTGG 60.447 63.158 0.00 0.00 0.00 4.00
76 77 1.674057 GTGTCAGCAGGCTAGTGGT 59.326 57.895 0.00 0.00 0.00 4.16
77 78 0.035458 GTGTCAGCAGGCTAGTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
78 79 0.764890 TGTCAGCAGGCTAGTGGTTT 59.235 50.000 0.00 0.00 0.00 3.27
79 80 1.160137 GTCAGCAGGCTAGTGGTTTG 58.840 55.000 0.00 0.00 0.00 2.93
80 81 0.606401 TCAGCAGGCTAGTGGTTTGC 60.606 55.000 0.00 0.00 35.09 3.68
81 82 0.890542 CAGCAGGCTAGTGGTTTGCA 60.891 55.000 0.00 0.00 37.24 4.08
82 83 0.038744 AGCAGGCTAGTGGTTTGCAT 59.961 50.000 0.00 0.00 37.24 3.96
83 84 0.171903 GCAGGCTAGTGGTTTGCATG 59.828 55.000 0.00 0.00 41.22 4.06
84 85 1.538047 CAGGCTAGTGGTTTGCATGT 58.462 50.000 0.00 0.00 35.20 3.21
85 86 1.470098 CAGGCTAGTGGTTTGCATGTC 59.530 52.381 0.00 0.00 35.20 3.06
86 87 1.352352 AGGCTAGTGGTTTGCATGTCT 59.648 47.619 0.00 0.00 0.00 3.41
87 88 2.571653 AGGCTAGTGGTTTGCATGTCTA 59.428 45.455 0.00 0.00 0.00 2.59
88 89 3.200825 AGGCTAGTGGTTTGCATGTCTAT 59.799 43.478 0.00 0.00 0.00 1.98
89 90 4.408921 AGGCTAGTGGTTTGCATGTCTATA 59.591 41.667 0.00 0.00 0.00 1.31
90 91 5.104527 AGGCTAGTGGTTTGCATGTCTATAA 60.105 40.000 0.00 0.00 0.00 0.98
91 92 5.007724 GGCTAGTGGTTTGCATGTCTATAAC 59.992 44.000 0.00 0.00 0.00 1.89
92 93 5.817816 GCTAGTGGTTTGCATGTCTATAACT 59.182 40.000 0.00 0.00 0.00 2.24
93 94 6.316390 GCTAGTGGTTTGCATGTCTATAACTT 59.684 38.462 0.00 0.00 0.00 2.66
94 95 6.500684 AGTGGTTTGCATGTCTATAACTTG 57.499 37.500 0.00 0.00 36.39 3.16
95 96 6.003950 AGTGGTTTGCATGTCTATAACTTGT 58.996 36.000 0.00 0.00 35.87 3.16
96 97 6.490040 AGTGGTTTGCATGTCTATAACTTGTT 59.510 34.615 0.00 0.00 35.87 2.83
97 98 6.801862 GTGGTTTGCATGTCTATAACTTGTTC 59.198 38.462 0.00 0.00 35.87 3.18
98 99 6.714810 TGGTTTGCATGTCTATAACTTGTTCT 59.285 34.615 0.00 0.00 35.87 3.01
99 100 7.230510 TGGTTTGCATGTCTATAACTTGTTCTT 59.769 33.333 0.00 0.00 35.87 2.52
100 101 7.750903 GGTTTGCATGTCTATAACTTGTTCTTC 59.249 37.037 0.00 0.00 35.87 2.87
101 102 6.985188 TGCATGTCTATAACTTGTTCTTCC 57.015 37.500 0.00 0.00 35.87 3.46
102 103 6.472016 TGCATGTCTATAACTTGTTCTTCCA 58.528 36.000 0.00 0.00 35.87 3.53
103 104 6.595326 TGCATGTCTATAACTTGTTCTTCCAG 59.405 38.462 0.00 0.00 35.87 3.86
104 105 6.595716 GCATGTCTATAACTTGTTCTTCCAGT 59.404 38.462 0.00 0.00 35.87 4.00
105 106 7.201565 GCATGTCTATAACTTGTTCTTCCAGTC 60.202 40.741 0.00 0.00 35.87 3.51
106 107 7.540474 TGTCTATAACTTGTTCTTCCAGTCT 57.460 36.000 0.00 0.00 0.00 3.24
107 108 7.963532 TGTCTATAACTTGTTCTTCCAGTCTT 58.036 34.615 0.00 0.00 0.00 3.01
108 109 7.872993 TGTCTATAACTTGTTCTTCCAGTCTTG 59.127 37.037 0.00 0.00 0.00 3.02
109 110 5.948992 ATAACTTGTTCTTCCAGTCTTGC 57.051 39.130 0.00 0.00 0.00 4.01
110 111 3.281727 ACTTGTTCTTCCAGTCTTGCA 57.718 42.857 0.00 0.00 0.00 4.08
111 112 3.825328 ACTTGTTCTTCCAGTCTTGCAT 58.175 40.909 0.00 0.00 0.00 3.96
112 113 4.973168 ACTTGTTCTTCCAGTCTTGCATA 58.027 39.130 0.00 0.00 0.00 3.14
113 114 5.376625 ACTTGTTCTTCCAGTCTTGCATAA 58.623 37.500 0.00 0.00 0.00 1.90
114 115 5.471456 ACTTGTTCTTCCAGTCTTGCATAAG 59.529 40.000 0.00 0.00 35.16 1.73
115 116 5.227569 TGTTCTTCCAGTCTTGCATAAGA 57.772 39.130 0.00 0.00 40.53 2.10
125 126 4.471904 TCTTGCATAAGACTACCCACAG 57.528 45.455 0.00 0.00 37.99 3.66
126 127 3.838317 TCTTGCATAAGACTACCCACAGT 59.162 43.478 0.00 0.00 37.99 3.55
127 128 3.610040 TGCATAAGACTACCCACAGTG 57.390 47.619 0.00 0.00 0.00 3.66
128 129 2.236146 TGCATAAGACTACCCACAGTGG 59.764 50.000 13.35 13.35 37.25 4.00
142 143 4.697514 CCACAGTGGGAGTAACATAGATG 58.302 47.826 12.40 0.00 32.67 2.90
143 144 4.443457 CCACAGTGGGAGTAACATAGATGG 60.443 50.000 12.40 0.00 32.67 3.51
144 145 4.162320 CACAGTGGGAGTAACATAGATGGT 59.838 45.833 0.00 0.00 0.00 3.55
145 146 5.362717 CACAGTGGGAGTAACATAGATGGTA 59.637 44.000 0.00 0.00 0.00 3.25
146 147 5.962031 ACAGTGGGAGTAACATAGATGGTAA 59.038 40.000 0.00 0.00 30.66 2.85
147 148 6.127140 ACAGTGGGAGTAACATAGATGGTAAC 60.127 42.308 0.00 0.00 30.66 2.50
184 185 9.662947 TCTAGATAAAATAGATGATGTGGCATG 57.337 33.333 0.00 0.00 0.00 4.06
185 186 9.445878 CTAGATAAAATAGATGATGTGGCATGT 57.554 33.333 0.00 0.00 0.00 3.21
187 188 9.797642 AGATAAAATAGATGATGTGGCATGTAA 57.202 29.630 0.00 0.00 29.35 2.41
194 195 9.743581 ATAGATGATGTGGCATGTAATTAATGA 57.256 29.630 0.00 0.00 29.35 2.57
195 196 8.467963 AGATGATGTGGCATGTAATTAATGAA 57.532 30.769 0.00 0.00 0.00 2.57
196 197 8.573885 AGATGATGTGGCATGTAATTAATGAAG 58.426 33.333 0.00 0.00 0.00 3.02
197 198 7.878547 TGATGTGGCATGTAATTAATGAAGA 57.121 32.000 0.00 0.00 0.00 2.87
198 199 8.291191 TGATGTGGCATGTAATTAATGAAGAA 57.709 30.769 0.00 0.00 0.00 2.52
199 200 8.747471 TGATGTGGCATGTAATTAATGAAGAAA 58.253 29.630 0.00 0.00 0.00 2.52
200 201 9.241317 GATGTGGCATGTAATTAATGAAGAAAG 57.759 33.333 0.00 0.00 0.00 2.62
201 202 8.347004 TGTGGCATGTAATTAATGAAGAAAGA 57.653 30.769 0.00 0.00 0.00 2.52
202 203 8.461222 TGTGGCATGTAATTAATGAAGAAAGAG 58.539 33.333 0.00 0.00 0.00 2.85
203 204 8.677300 GTGGCATGTAATTAATGAAGAAAGAGA 58.323 33.333 0.00 0.00 0.00 3.10
204 205 8.896744 TGGCATGTAATTAATGAAGAAAGAGAG 58.103 33.333 10.14 0.00 0.00 3.20
205 206 8.348507 GGCATGTAATTAATGAAGAAAGAGAGG 58.651 37.037 10.14 0.00 0.00 3.69
206 207 7.859875 GCATGTAATTAATGAAGAAAGAGAGGC 59.140 37.037 10.14 0.00 0.00 4.70
207 208 8.896744 CATGTAATTAATGAAGAAAGAGAGGCA 58.103 33.333 0.00 0.00 0.00 4.75
208 209 9.638176 ATGTAATTAATGAAGAAAGAGAGGCAT 57.362 29.630 0.00 0.00 0.00 4.40
209 210 8.896744 TGTAATTAATGAAGAAAGAGAGGCATG 58.103 33.333 0.00 0.00 0.00 4.06
210 211 7.951347 AATTAATGAAGAAAGAGAGGCATGT 57.049 32.000 0.00 0.00 0.00 3.21
211 212 6.748333 TTAATGAAGAAAGAGAGGCATGTG 57.252 37.500 0.00 0.00 0.00 3.21
212 213 3.063510 TGAAGAAAGAGAGGCATGTGG 57.936 47.619 0.00 0.00 0.00 4.17
213 214 2.373169 TGAAGAAAGAGAGGCATGTGGT 59.627 45.455 0.00 0.00 0.00 4.16
214 215 3.582647 TGAAGAAAGAGAGGCATGTGGTA 59.417 43.478 0.00 0.00 0.00 3.25
215 216 4.041567 TGAAGAAAGAGAGGCATGTGGTAA 59.958 41.667 0.00 0.00 0.00 2.85
216 217 4.851639 AGAAAGAGAGGCATGTGGTAAT 57.148 40.909 0.00 0.00 0.00 1.89
217 218 5.957771 AGAAAGAGAGGCATGTGGTAATA 57.042 39.130 0.00 0.00 0.00 0.98
218 219 6.506538 AGAAAGAGAGGCATGTGGTAATAT 57.493 37.500 0.00 0.00 0.00 1.28
219 220 7.618019 AGAAAGAGAGGCATGTGGTAATATA 57.382 36.000 0.00 0.00 0.00 0.86
220 221 7.675062 AGAAAGAGAGGCATGTGGTAATATAG 58.325 38.462 0.00 0.00 0.00 1.31
221 222 5.413309 AGAGAGGCATGTGGTAATATAGC 57.587 43.478 0.00 0.00 0.00 2.97
222 223 5.090139 AGAGAGGCATGTGGTAATATAGCT 58.910 41.667 0.00 0.00 0.00 3.32
223 224 6.256819 AGAGAGGCATGTGGTAATATAGCTA 58.743 40.000 0.00 0.00 0.00 3.32
224 225 6.726299 AGAGAGGCATGTGGTAATATAGCTAA 59.274 38.462 0.00 0.00 0.00 3.09
225 226 7.401493 AGAGAGGCATGTGGTAATATAGCTAAT 59.599 37.037 0.00 0.00 0.00 1.73
226 227 7.922382 AGAGGCATGTGGTAATATAGCTAATT 58.078 34.615 0.00 2.20 0.00 1.40
227 228 9.046846 AGAGGCATGTGGTAATATAGCTAATTA 57.953 33.333 0.00 1.23 0.00 1.40
228 229 9.099454 GAGGCATGTGGTAATATAGCTAATTAC 57.901 37.037 19.73 19.73 38.52 1.89
229 230 8.826765 AGGCATGTGGTAATATAGCTAATTACT 58.173 33.333 23.28 11.59 39.00 2.24
230 231 8.883731 GGCATGTGGTAATATAGCTAATTACTG 58.116 37.037 23.28 18.38 39.00 2.74
231 232 9.436957 GCATGTGGTAATATAGCTAATTACTGT 57.563 33.333 23.28 13.05 39.00 3.55
304 305 8.851541 TGTGATGCATGATACAATACATATGT 57.148 30.769 13.93 13.93 34.81 2.29
305 306 9.287373 TGTGATGCATGATACAATACATATGTT 57.713 29.630 14.77 0.00 32.27 2.71
317 318 8.086143 ACAATACATATGTTACTACCCACTGT 57.914 34.615 14.77 0.00 0.00 3.55
318 319 7.985184 ACAATACATATGTTACTACCCACTGTG 59.015 37.037 14.77 0.00 0.00 3.66
319 320 5.353394 ACATATGTTACTACCCACTGTGG 57.647 43.478 20.01 20.01 37.25 4.17
320 321 5.027460 ACATATGTTACTACCCACTGTGGA 58.973 41.667 27.94 8.24 40.96 4.02
321 322 5.128827 ACATATGTTACTACCCACTGTGGAG 59.871 44.000 27.94 19.53 40.96 3.86
322 323 2.253610 TGTTACTACCCACTGTGGAGG 58.746 52.381 27.94 17.76 40.96 4.30
323 324 2.254508 GTTACTACCCACTGTGGAGGT 58.745 52.381 27.94 21.84 40.96 3.85
324 325 3.181419 TGTTACTACCCACTGTGGAGGTA 60.181 47.826 27.94 20.93 40.96 3.08
326 327 2.233305 CTACCCACTGTGGAGGTAGT 57.767 55.000 27.94 17.93 45.39 2.73
327 328 3.377253 CTACCCACTGTGGAGGTAGTA 57.623 52.381 27.94 18.08 45.39 1.82
328 329 2.708037 ACCCACTGTGGAGGTAGTAA 57.292 50.000 27.94 0.00 40.96 2.24
329 330 2.254508 ACCCACTGTGGAGGTAGTAAC 58.745 52.381 27.94 0.00 40.96 2.50
330 331 2.253610 CCCACTGTGGAGGTAGTAACA 58.746 52.381 27.94 0.00 40.96 2.41
331 332 2.838202 CCCACTGTGGAGGTAGTAACAT 59.162 50.000 27.94 0.00 40.96 2.71
332 333 4.028131 CCCACTGTGGAGGTAGTAACATA 58.972 47.826 27.94 0.00 40.96 2.29
333 334 4.099573 CCCACTGTGGAGGTAGTAACATAG 59.900 50.000 27.94 2.06 40.96 2.23
334 335 4.954202 CCACTGTGGAGGTAGTAACATAGA 59.046 45.833 22.33 0.00 40.96 1.98
335 336 5.163540 CCACTGTGGAGGTAGTAACATAGAC 60.164 48.000 22.33 0.00 40.96 2.59
336 337 5.652891 CACTGTGGAGGTAGTAACATAGACT 59.347 44.000 0.00 0.00 0.00 3.24
337 338 6.827251 CACTGTGGAGGTAGTAACATAGACTA 59.173 42.308 0.00 0.00 0.00 2.59
338 339 7.012515 CACTGTGGAGGTAGTAACATAGACTAG 59.987 44.444 0.00 0.00 30.08 2.57
339 340 6.966751 TGTGGAGGTAGTAACATAGACTAGT 58.033 40.000 0.00 0.00 30.08 2.57
340 341 8.094284 TGTGGAGGTAGTAACATAGACTAGTA 57.906 38.462 0.00 0.00 30.08 1.82
341 342 8.551440 TGTGGAGGTAGTAACATAGACTAGTAA 58.449 37.037 0.00 0.00 30.08 2.24
342 343 8.835439 GTGGAGGTAGTAACATAGACTAGTAAC 58.165 40.741 0.00 0.00 30.08 2.50
343 344 8.551440 TGGAGGTAGTAACATAGACTAGTAACA 58.449 37.037 0.00 0.00 30.08 2.41
344 345 9.571816 GGAGGTAGTAACATAGACTAGTAACAT 57.428 37.037 0.00 0.00 30.08 2.71
372 373 9.401058 TGTATGTTACTACTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
373 374 7.894753 ATGTTACTACTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
374 375 6.793478 TGTTACTACTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
375 376 6.660949 TGTTACTACTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
376 377 5.533333 ACTACTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
377 378 5.262804 ACTACTCTAAGTTACTCCCCACTG 58.737 45.833 0.00 0.00 0.00 3.66
378 379 4.129317 ACTCTAAGTTACTCCCCACTGT 57.871 45.455 0.00 0.00 0.00 3.55
379 380 3.833070 ACTCTAAGTTACTCCCCACTGTG 59.167 47.826 0.00 0.00 0.00 3.66
380 381 4.087182 CTCTAAGTTACTCCCCACTGTGA 58.913 47.826 9.86 0.00 0.00 3.58
381 382 3.830755 TCTAAGTTACTCCCCACTGTGAC 59.169 47.826 9.86 0.00 0.00 3.67
382 383 2.400467 AGTTACTCCCCACTGTGACT 57.600 50.000 9.86 0.00 0.00 3.41
383 384 3.537795 AGTTACTCCCCACTGTGACTA 57.462 47.619 9.86 0.00 32.48 2.59
384 385 3.432378 AGTTACTCCCCACTGTGACTAG 58.568 50.000 9.86 5.62 32.48 2.57
385 386 3.163467 GTTACTCCCCACTGTGACTAGT 58.837 50.000 9.86 10.99 0.00 2.57
386 387 1.926108 ACTCCCCACTGTGACTAGTC 58.074 55.000 16.32 16.32 0.00 2.59
397 398 5.578727 CACTGTGACTAGTCTAAAATGGAGC 59.421 44.000 23.01 0.00 0.00 4.70
421 422 5.390461 CGAGCTGCTATATCAGTACTGAGTC 60.390 48.000 28.29 15.78 43.61 3.36
536 541 4.997905 TGAAATCTGAAGAGCGTTTGAG 57.002 40.909 0.00 0.00 0.00 3.02
544 549 5.414765 TCTGAAGAGCGTTTGAGTACATCTA 59.585 40.000 0.00 0.00 0.00 1.98
547 552 3.117046 GAGCGTTTGAGTACATCTAGGC 58.883 50.000 0.00 0.00 0.00 3.93
553 558 5.515626 CGTTTGAGTACATCTAGGCTGTAAC 59.484 44.000 0.00 4.31 31.27 2.50
562 568 9.504708 GTACATCTAGGCTGTAACTCTAGATAA 57.495 37.037 10.55 2.38 44.40 1.75
619 625 2.430465 CCTGAGTTGGGAGTTCACATG 58.570 52.381 0.00 0.00 0.00 3.21
620 626 2.038952 CCTGAGTTGGGAGTTCACATGA 59.961 50.000 0.00 0.00 0.00 3.07
623 629 1.352352 AGTTGGGAGTTCACATGAGGG 59.648 52.381 0.00 0.00 0.00 4.30
658 664 1.221466 TTCTTCAGCAAGCGTCGGTG 61.221 55.000 0.00 0.00 0.00 4.94
683 689 1.433837 GACACCGTGCCTTCGTTTGT 61.434 55.000 0.00 0.00 0.00 2.83
684 690 1.027792 ACACCGTGCCTTCGTTTGTT 61.028 50.000 0.00 0.00 0.00 2.83
690 696 2.720590 CGTGCCTTCGTTTGTTGATACG 60.721 50.000 0.00 0.00 39.03 3.06
691 697 2.222445 GTGCCTTCGTTTGTTGATACGT 59.778 45.455 0.00 0.00 38.79 3.57
692 698 3.429543 GTGCCTTCGTTTGTTGATACGTA 59.570 43.478 0.00 0.00 38.79 3.57
765 771 0.869730 TTTTACGTCTCTTTGCCCGC 59.130 50.000 0.00 0.00 0.00 6.13
809 815 2.765250 TTCTCTTGCTGACCGCCGAC 62.765 60.000 0.00 0.00 38.05 4.79
936 943 2.365941 GAGGCCCTCTATATATTCGCCC 59.634 54.545 2.64 0.00 35.46 6.13
966 973 1.010797 GTGAGCACACAACACAGCG 60.011 57.895 9.58 0.00 45.32 5.18
990 997 1.541588 GGTTGCAAGAAGTAGCCAAGG 59.458 52.381 0.00 0.00 33.41 3.61
1027 1034 3.295273 TGCACGAGAGCACTCCGT 61.295 61.111 5.52 4.43 40.11 4.69
1045 1052 0.037790 GTCGCTCCTTGTGCTCTTCT 60.038 55.000 0.00 0.00 0.00 2.85
1053 1060 2.610479 CCTTGTGCTCTTCTTGTCGCTA 60.610 50.000 0.00 0.00 0.00 4.26
1060 1067 3.779759 CTCTTCTTGTCGCTAATGCTCT 58.220 45.455 0.00 0.00 36.97 4.09
1064 1071 5.470098 TCTTCTTGTCGCTAATGCTCTTTTT 59.530 36.000 0.00 0.00 36.97 1.94
1069 1076 2.415168 TCGCTAATGCTCTTTTTCACGG 59.585 45.455 0.00 0.00 36.97 4.94
1071 1078 2.774007 CTAATGCTCTTTTTCACGGCG 58.226 47.619 4.80 4.80 0.00 6.46
1102 1109 1.742761 CCACATGACTGGTGATCCAC 58.257 55.000 0.00 0.00 39.03 4.02
1197 1777 1.536662 ACCGAGGCCAGTTCCTTCT 60.537 57.895 5.01 0.00 36.38 2.85
1226 1806 2.091499 ACCCTATACACCATCGTCCTCA 60.091 50.000 0.00 0.00 0.00 3.86
1227 1807 3.165875 CCCTATACACCATCGTCCTCAT 58.834 50.000 0.00 0.00 0.00 2.90
1228 1808 3.056536 CCCTATACACCATCGTCCTCATG 60.057 52.174 0.00 0.00 0.00 3.07
1233 1813 2.111878 CATCGTCCTCATGCCCCC 59.888 66.667 0.00 0.00 0.00 5.40
1376 1956 2.435437 ACCATCATCACCGATGTCATGA 59.565 45.455 4.03 0.00 41.06 3.07
1379 1959 2.110578 TCATCACCGATGTCATGACCT 58.889 47.619 22.85 13.58 40.55 3.85
1386 1966 0.249911 GATGTCATGACCTACCGCCC 60.250 60.000 22.85 0.00 0.00 6.13
1407 1987 1.078848 ATCAACAGAGGAGGCGTGC 60.079 57.895 0.00 0.00 0.00 5.34
1420 2000 2.988549 GCGTGCGAAGGCGATATCG 61.989 63.158 20.79 20.79 44.10 2.92
1442 2022 2.034221 GCCGAGGCCAGTTCCTTT 59.966 61.111 5.01 0.00 36.38 3.11
1464 2044 4.431416 TGGATCACACCCCATACATAAC 57.569 45.455 0.00 0.00 0.00 1.89
1467 2047 3.637911 TCACACCCCATACATAACCAC 57.362 47.619 0.00 0.00 0.00 4.16
1470 2050 1.850345 CACCCCATACATAACCACCCT 59.150 52.381 0.00 0.00 0.00 4.34
1471 2051 1.850345 ACCCCATACATAACCACCCTG 59.150 52.381 0.00 0.00 0.00 4.45
1475 2055 2.487265 CCATACATAACCACCCTGCTCC 60.487 54.545 0.00 0.00 0.00 4.70
1478 2058 0.620556 CATAACCACCCTGCTCCAGT 59.379 55.000 0.00 0.00 0.00 4.00
1481 2061 4.729918 CCACCCTGCTCCAGTGCC 62.730 72.222 0.00 0.00 0.00 5.01
1482 2062 3.644606 CACCCTGCTCCAGTGCCT 61.645 66.667 0.00 0.00 0.00 4.75
1494 2074 1.151450 AGTGCCTCAACCCAACCAG 59.849 57.895 0.00 0.00 0.00 4.00
1500 2080 0.606401 CTCAACCCAACCAGCATCGT 60.606 55.000 0.00 0.00 0.00 3.73
1528 2108 4.431131 CCCCACCGCCTGCATCTT 62.431 66.667 0.00 0.00 0.00 2.40
1538 2118 3.491208 CTGCATCTTTGGAGGAGGG 57.509 57.895 0.00 0.00 37.63 4.30
1564 2144 2.326222 GGCGACAACATGTCACCAA 58.674 52.632 11.60 0.00 46.11 3.67
1583 2163 0.853530 AGGAGGCCACTTCCTGTTTT 59.146 50.000 11.17 0.00 36.38 2.43
1590 2170 1.476110 CCACTTCCTGTTTTCGGACCA 60.476 52.381 0.00 0.00 0.00 4.02
1602 2182 0.186386 TCGGACCAAACCCAAACCAT 59.814 50.000 0.00 0.00 0.00 3.55
1610 2190 2.018355 AACCCAAACCATAACCACCC 57.982 50.000 0.00 0.00 0.00 4.61
1689 2269 5.318349 CGCCTTTTACATTTAGTTACACCG 58.682 41.667 0.00 0.00 0.00 4.94
1718 2298 9.790344 AGCACTAGCAAATAAGAGATAAATCAT 57.210 29.630 0.00 0.00 45.49 2.45
2013 2595 3.511540 TCTCGAGTTGCCCATATCCATAG 59.488 47.826 13.13 0.00 0.00 2.23
2014 2596 3.506398 TCGAGTTGCCCATATCCATAGA 58.494 45.455 0.00 0.00 0.00 1.98
2015 2597 3.258372 TCGAGTTGCCCATATCCATAGAC 59.742 47.826 0.00 0.00 0.00 2.59
2016 2598 3.259374 CGAGTTGCCCATATCCATAGACT 59.741 47.826 0.00 0.00 0.00 3.24
2017 2599 4.462834 CGAGTTGCCCATATCCATAGACTA 59.537 45.833 0.00 0.00 0.00 2.59
2018 2600 5.393569 CGAGTTGCCCATATCCATAGACTAG 60.394 48.000 0.00 0.00 0.00 2.57
2022 2604 6.402981 TGCCCATATCCATAGACTAGACTA 57.597 41.667 4.40 4.40 0.00 2.59
2028 2610 3.061369 TCCATAGACTAGACTAGGCCCA 58.939 50.000 11.99 0.60 32.90 5.36
2136 2718 2.198426 CAGCCAAACCCACACCCT 59.802 61.111 0.00 0.00 0.00 4.34
2137 2719 1.903404 CAGCCAAACCCACACCCTC 60.903 63.158 0.00 0.00 0.00 4.30
2139 2721 3.146828 GCCAAACCCACACCCTCCT 62.147 63.158 0.00 0.00 0.00 3.69
2140 2722 1.074951 CCAAACCCACACCCTCCTC 59.925 63.158 0.00 0.00 0.00 3.71
2142 2724 1.386772 AAACCCACACCCTCCTCCA 60.387 57.895 0.00 0.00 0.00 3.86
2143 2725 1.716028 AAACCCACACCCTCCTCCAC 61.716 60.000 0.00 0.00 0.00 4.02
2144 2726 2.203998 CCCACACCCTCCTCCACT 60.204 66.667 0.00 0.00 0.00 4.00
2441 3026 0.034380 TCCTCGTTCTCCGGTGAGAT 60.034 55.000 6.29 0.00 46.75 2.75
2442 3027 0.101399 CCTCGTTCTCCGGTGAGATG 59.899 60.000 6.29 4.37 46.75 2.90
2476 3061 1.379527 CCCTTATGTTTGAGCCCGAC 58.620 55.000 0.00 0.00 0.00 4.79
2512 3109 1.748493 TGCAGTTTCAGTTTGGACACC 59.252 47.619 0.00 0.00 0.00 4.16
2533 3130 3.372206 CCCGAGTGTCAGAAATGCTAAAG 59.628 47.826 0.00 0.00 0.00 1.85
2537 3134 5.597813 AGTGTCAGAAATGCTAAAGTTCG 57.402 39.130 0.00 0.00 0.00 3.95
2554 3151 3.830192 GCCAGCCGCCAATCCAAG 61.830 66.667 0.00 0.00 0.00 3.61
2611 3211 3.106609 TGGCCACCTGGGTTCCAA 61.107 61.111 0.00 0.00 39.65 3.53
2632 3237 2.910688 ATTGTAGTATCAGGGGCACG 57.089 50.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.801067 GCACGTAGGTACCAGCGAAG 60.801 60.000 27.20 20.47 0.00 3.79
21 22 1.213537 GCACGTAGGTACCAGCGAA 59.786 57.895 27.20 1.64 0.00 4.70
22 23 2.879907 GCACGTAGGTACCAGCGA 59.120 61.111 27.20 3.77 0.00 4.93
23 24 2.578713 CGCACGTAGGTACCAGCG 60.579 66.667 21.38 21.38 38.78 5.18
24 25 1.074872 GAACGCACGTAGGTACCAGC 61.075 60.000 15.94 8.78 0.00 4.85
25 26 0.241749 TGAACGCACGTAGGTACCAG 59.758 55.000 15.94 7.59 0.00 4.00
26 27 0.039256 GTGAACGCACGTAGGTACCA 60.039 55.000 15.94 0.00 34.94 3.25
27 28 2.729378 GTGAACGCACGTAGGTACC 58.271 57.895 2.73 2.73 34.94 3.34
36 37 3.156334 CACTAGCCGTGAACGCAC 58.844 61.111 0.00 0.00 46.81 5.34
43 44 4.459973 CACGTCTCACTAGCCGTG 57.540 61.111 0.00 0.00 43.70 4.94
44 45 0.887836 TGACACGTCTCACTAGCCGT 60.888 55.000 0.00 0.00 0.00 5.68
45 46 0.179187 CTGACACGTCTCACTAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
46 47 0.456995 GCTGACACGTCTCACTAGCC 60.457 60.000 0.00 0.00 0.00 3.93
47 48 0.241213 TGCTGACACGTCTCACTAGC 59.759 55.000 0.00 0.00 0.00 3.42
48 49 1.135546 CCTGCTGACACGTCTCACTAG 60.136 57.143 0.00 0.00 0.00 2.57
49 50 0.881796 CCTGCTGACACGTCTCACTA 59.118 55.000 0.00 0.00 0.00 2.74
50 51 1.662608 CCTGCTGACACGTCTCACT 59.337 57.895 0.00 0.00 0.00 3.41
51 52 2.024319 GCCTGCTGACACGTCTCAC 61.024 63.158 0.00 0.00 0.00 3.51
52 53 0.893727 TAGCCTGCTGACACGTCTCA 60.894 55.000 0.97 0.00 0.00 3.27
53 54 0.179150 CTAGCCTGCTGACACGTCTC 60.179 60.000 0.97 0.00 0.00 3.36
54 55 0.896019 ACTAGCCTGCTGACACGTCT 60.896 55.000 0.97 0.00 0.00 4.18
55 56 0.734253 CACTAGCCTGCTGACACGTC 60.734 60.000 0.97 0.00 0.00 4.34
56 57 1.290324 CACTAGCCTGCTGACACGT 59.710 57.895 0.97 0.00 0.00 4.49
57 58 1.446792 CCACTAGCCTGCTGACACG 60.447 63.158 0.97 0.00 0.00 4.49
58 59 0.035458 AACCACTAGCCTGCTGACAC 59.965 55.000 0.97 0.00 0.00 3.67
59 60 0.764890 AAACCACTAGCCTGCTGACA 59.235 50.000 0.97 0.00 0.00 3.58
60 61 1.160137 CAAACCACTAGCCTGCTGAC 58.840 55.000 0.97 0.00 0.00 3.51
61 62 0.606401 GCAAACCACTAGCCTGCTGA 60.606 55.000 0.97 0.00 0.00 4.26
62 63 0.890542 TGCAAACCACTAGCCTGCTG 60.891 55.000 0.97 0.00 34.10 4.41
63 64 0.038744 ATGCAAACCACTAGCCTGCT 59.961 50.000 0.00 0.00 34.10 4.24
64 65 0.171903 CATGCAAACCACTAGCCTGC 59.828 55.000 0.00 0.00 0.00 4.85
65 66 1.470098 GACATGCAAACCACTAGCCTG 59.530 52.381 0.00 0.00 0.00 4.85
66 67 1.352352 AGACATGCAAACCACTAGCCT 59.648 47.619 0.00 0.00 0.00 4.58
67 68 1.826385 AGACATGCAAACCACTAGCC 58.174 50.000 0.00 0.00 0.00 3.93
68 69 5.817816 AGTTATAGACATGCAAACCACTAGC 59.182 40.000 0.00 0.00 0.00 3.42
69 70 7.334421 ACAAGTTATAGACATGCAAACCACTAG 59.666 37.037 0.00 0.00 30.21 2.57
70 71 7.165485 ACAAGTTATAGACATGCAAACCACTA 58.835 34.615 0.00 0.00 30.21 2.74
71 72 6.003950 ACAAGTTATAGACATGCAAACCACT 58.996 36.000 0.00 0.00 30.21 4.00
72 73 6.254281 ACAAGTTATAGACATGCAAACCAC 57.746 37.500 0.00 0.00 30.21 4.16
73 74 6.714810 AGAACAAGTTATAGACATGCAAACCA 59.285 34.615 0.00 0.00 30.21 3.67
74 75 7.145932 AGAACAAGTTATAGACATGCAAACC 57.854 36.000 0.00 0.00 30.21 3.27
75 76 7.750903 GGAAGAACAAGTTATAGACATGCAAAC 59.249 37.037 0.00 0.00 30.21 2.93
76 77 7.446931 TGGAAGAACAAGTTATAGACATGCAAA 59.553 33.333 0.00 0.00 30.21 3.68
77 78 6.939730 TGGAAGAACAAGTTATAGACATGCAA 59.060 34.615 0.00 0.00 30.21 4.08
78 79 6.472016 TGGAAGAACAAGTTATAGACATGCA 58.528 36.000 0.00 0.00 30.21 3.96
79 80 6.595716 ACTGGAAGAACAAGTTATAGACATGC 59.404 38.462 0.00 0.00 37.43 4.06
80 81 8.037758 AGACTGGAAGAACAAGTTATAGACATG 58.962 37.037 0.00 0.00 37.43 3.21
81 82 8.140112 AGACTGGAAGAACAAGTTATAGACAT 57.860 34.615 0.00 0.00 37.43 3.06
82 83 7.540474 AGACTGGAAGAACAAGTTATAGACA 57.460 36.000 0.00 0.00 37.43 3.41
83 84 7.148557 GCAAGACTGGAAGAACAAGTTATAGAC 60.149 40.741 0.00 0.00 37.43 2.59
84 85 6.874134 GCAAGACTGGAAGAACAAGTTATAGA 59.126 38.462 0.00 0.00 37.43 1.98
85 86 6.650807 TGCAAGACTGGAAGAACAAGTTATAG 59.349 38.462 0.00 0.00 37.43 1.31
86 87 6.530120 TGCAAGACTGGAAGAACAAGTTATA 58.470 36.000 0.00 0.00 37.43 0.98
87 88 5.376625 TGCAAGACTGGAAGAACAAGTTAT 58.623 37.500 0.00 0.00 37.43 1.89
88 89 4.776349 TGCAAGACTGGAAGAACAAGTTA 58.224 39.130 0.00 0.00 37.43 2.24
89 90 3.620488 TGCAAGACTGGAAGAACAAGTT 58.380 40.909 0.00 0.00 37.43 2.66
90 91 3.281727 TGCAAGACTGGAAGAACAAGT 57.718 42.857 0.00 0.00 37.43 3.16
91 92 5.702670 TCTTATGCAAGACTGGAAGAACAAG 59.297 40.000 0.00 0.00 35.82 3.16
92 93 5.620206 TCTTATGCAAGACTGGAAGAACAA 58.380 37.500 0.00 0.00 35.82 2.83
93 94 5.227569 TCTTATGCAAGACTGGAAGAACA 57.772 39.130 0.00 0.00 35.82 3.18
104 105 3.838317 ACTGTGGGTAGTCTTATGCAAGA 59.162 43.478 0.00 0.00 38.49 3.02
105 106 3.935203 CACTGTGGGTAGTCTTATGCAAG 59.065 47.826 0.00 0.00 0.00 4.01
106 107 3.307410 CCACTGTGGGTAGTCTTATGCAA 60.307 47.826 19.23 0.00 32.67 4.08
107 108 2.236146 CCACTGTGGGTAGTCTTATGCA 59.764 50.000 19.23 0.00 32.67 3.96
108 109 2.906354 CCACTGTGGGTAGTCTTATGC 58.094 52.381 19.23 0.00 32.67 3.14
120 121 4.443457 CCATCTATGTTACTCCCACTGTGG 60.443 50.000 20.01 20.01 37.25 4.17
121 122 4.162320 ACCATCTATGTTACTCCCACTGTG 59.838 45.833 0.00 0.00 0.00 3.66
122 123 4.362677 ACCATCTATGTTACTCCCACTGT 58.637 43.478 0.00 0.00 0.00 3.55
123 124 6.127168 TGTTACCATCTATGTTACTCCCACTG 60.127 42.308 0.00 0.00 0.00 3.66
124 125 5.962031 TGTTACCATCTATGTTACTCCCACT 59.038 40.000 0.00 0.00 0.00 4.00
125 126 6.229936 TGTTACCATCTATGTTACTCCCAC 57.770 41.667 0.00 0.00 0.00 4.61
126 127 6.613679 TGATGTTACCATCTATGTTACTCCCA 59.386 38.462 1.69 0.00 46.38 4.37
127 128 6.929606 GTGATGTTACCATCTATGTTACTCCC 59.070 42.308 1.69 0.00 46.38 4.30
128 129 7.438459 GTGTGATGTTACCATCTATGTTACTCC 59.562 40.741 1.69 0.00 46.38 3.85
129 130 8.198109 AGTGTGATGTTACCATCTATGTTACTC 58.802 37.037 1.69 0.00 46.38 2.59
130 131 8.079211 AGTGTGATGTTACCATCTATGTTACT 57.921 34.615 1.69 0.00 46.38 2.24
131 132 8.718102 AAGTGTGATGTTACCATCTATGTTAC 57.282 34.615 1.69 0.00 46.38 2.50
133 134 9.547753 GATAAGTGTGATGTTACCATCTATGTT 57.452 33.333 1.69 0.00 46.38 2.71
134 135 8.928448 AGATAAGTGTGATGTTACCATCTATGT 58.072 33.333 1.69 0.00 46.38 2.29
137 138 9.862149 TCTAGATAAGTGTGATGTTACCATCTA 57.138 33.333 1.69 0.00 46.38 1.98
138 139 8.768501 TCTAGATAAGTGTGATGTTACCATCT 57.231 34.615 1.69 0.00 46.38 2.90
158 159 9.662947 CATGCCACATCATCTATTTTATCTAGA 57.337 33.333 0.00 0.00 0.00 2.43
159 160 9.445878 ACATGCCACATCATCTATTTTATCTAG 57.554 33.333 0.00 0.00 0.00 2.43
161 162 9.797642 TTACATGCCACATCATCTATTTTATCT 57.202 29.630 0.00 0.00 0.00 1.98
168 169 9.743581 TCATTAATTACATGCCACATCATCTAT 57.256 29.630 0.00 0.00 0.00 1.98
169 170 9.571816 TTCATTAATTACATGCCACATCATCTA 57.428 29.630 0.00 0.00 0.00 1.98
170 171 8.467963 TTCATTAATTACATGCCACATCATCT 57.532 30.769 0.00 0.00 0.00 2.90
171 172 8.570488 TCTTCATTAATTACATGCCACATCATC 58.430 33.333 0.00 0.00 0.00 2.92
172 173 8.467963 TCTTCATTAATTACATGCCACATCAT 57.532 30.769 0.00 0.00 0.00 2.45
173 174 7.878547 TCTTCATTAATTACATGCCACATCA 57.121 32.000 0.00 0.00 0.00 3.07
174 175 9.241317 CTTTCTTCATTAATTACATGCCACATC 57.759 33.333 0.00 0.00 0.00 3.06
175 176 8.970020 TCTTTCTTCATTAATTACATGCCACAT 58.030 29.630 0.00 0.00 0.00 3.21
176 177 8.347004 TCTTTCTTCATTAATTACATGCCACA 57.653 30.769 0.00 0.00 0.00 4.17
177 178 8.677300 TCTCTTTCTTCATTAATTACATGCCAC 58.323 33.333 0.00 0.00 0.00 5.01
178 179 8.806429 TCTCTTTCTTCATTAATTACATGCCA 57.194 30.769 0.00 0.00 0.00 4.92
179 180 8.348507 CCTCTCTTTCTTCATTAATTACATGCC 58.651 37.037 0.00 0.00 0.00 4.40
180 181 7.859875 GCCTCTCTTTCTTCATTAATTACATGC 59.140 37.037 0.00 0.00 0.00 4.06
181 182 8.896744 TGCCTCTCTTTCTTCATTAATTACATG 58.103 33.333 0.00 0.00 0.00 3.21
182 183 9.638176 ATGCCTCTCTTTCTTCATTAATTACAT 57.362 29.630 0.00 0.00 0.00 2.29
183 184 8.896744 CATGCCTCTCTTTCTTCATTAATTACA 58.103 33.333 0.00 0.00 0.00 2.41
184 185 8.897752 ACATGCCTCTCTTTCTTCATTAATTAC 58.102 33.333 0.00 0.00 0.00 1.89
185 186 8.896744 CACATGCCTCTCTTTCTTCATTAATTA 58.103 33.333 0.00 0.00 0.00 1.40
186 187 7.147949 CCACATGCCTCTCTTTCTTCATTAATT 60.148 37.037 0.00 0.00 0.00 1.40
187 188 6.320672 CCACATGCCTCTCTTTCTTCATTAAT 59.679 38.462 0.00 0.00 0.00 1.40
188 189 5.649395 CCACATGCCTCTCTTTCTTCATTAA 59.351 40.000 0.00 0.00 0.00 1.40
189 190 5.188434 CCACATGCCTCTCTTTCTTCATTA 58.812 41.667 0.00 0.00 0.00 1.90
190 191 4.015084 CCACATGCCTCTCTTTCTTCATT 58.985 43.478 0.00 0.00 0.00 2.57
191 192 3.009916 ACCACATGCCTCTCTTTCTTCAT 59.990 43.478 0.00 0.00 0.00 2.57
192 193 2.373169 ACCACATGCCTCTCTTTCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
193 194 3.064900 ACCACATGCCTCTCTTTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
194 195 4.640771 TTACCACATGCCTCTCTTTCTT 57.359 40.909 0.00 0.00 0.00 2.52
195 196 4.851639 ATTACCACATGCCTCTCTTTCT 57.148 40.909 0.00 0.00 0.00 2.52
196 197 6.370166 GCTATATTACCACATGCCTCTCTTTC 59.630 42.308 0.00 0.00 0.00 2.62
197 198 6.043706 AGCTATATTACCACATGCCTCTCTTT 59.956 38.462 0.00 0.00 0.00 2.52
198 199 5.545723 AGCTATATTACCACATGCCTCTCTT 59.454 40.000 0.00 0.00 0.00 2.85
199 200 5.090139 AGCTATATTACCACATGCCTCTCT 58.910 41.667 0.00 0.00 0.00 3.10
200 201 5.413309 AGCTATATTACCACATGCCTCTC 57.587 43.478 0.00 0.00 0.00 3.20
201 202 6.935240 TTAGCTATATTACCACATGCCTCT 57.065 37.500 0.00 0.00 0.00 3.69
202 203 9.099454 GTAATTAGCTATATTACCACATGCCTC 57.901 37.037 18.42 1.88 34.08 4.70
203 204 8.826765 AGTAATTAGCTATATTACCACATGCCT 58.173 33.333 22.00 9.16 38.60 4.75
204 205 8.883731 CAGTAATTAGCTATATTACCACATGCC 58.116 37.037 22.00 7.33 38.60 4.40
205 206 9.436957 ACAGTAATTAGCTATATTACCACATGC 57.563 33.333 22.00 7.77 38.60 4.06
278 279 9.457436 ACATATGTATTGTATCATGCATCACAT 57.543 29.630 6.56 7.54 40.66 3.21
279 280 8.851541 ACATATGTATTGTATCATGCATCACA 57.148 30.769 6.56 0.00 0.00 3.58
291 292 9.204337 ACAGTGGGTAGTAACATATGTATTGTA 57.796 33.333 9.21 0.00 0.00 2.41
292 293 7.985184 CACAGTGGGTAGTAACATATGTATTGT 59.015 37.037 9.21 1.26 0.00 2.71
293 294 7.441157 CCACAGTGGGTAGTAACATATGTATTG 59.559 40.741 12.40 0.62 32.67 1.90
294 295 7.346175 TCCACAGTGGGTAGTAACATATGTATT 59.654 37.037 20.14 0.00 38.32 1.89
295 296 6.842280 TCCACAGTGGGTAGTAACATATGTAT 59.158 38.462 20.14 1.12 38.32 2.29
296 297 6.196434 TCCACAGTGGGTAGTAACATATGTA 58.804 40.000 20.14 0.00 38.32 2.29
297 298 5.027460 TCCACAGTGGGTAGTAACATATGT 58.973 41.667 20.14 1.41 38.32 2.29
298 299 5.453339 CCTCCACAGTGGGTAGTAACATATG 60.453 48.000 20.14 0.00 38.32 1.78
299 300 4.654262 CCTCCACAGTGGGTAGTAACATAT 59.346 45.833 20.14 0.00 38.32 1.78
300 301 4.028131 CCTCCACAGTGGGTAGTAACATA 58.972 47.826 20.14 0.00 38.32 2.29
301 302 2.838202 CCTCCACAGTGGGTAGTAACAT 59.162 50.000 20.14 0.00 38.32 2.71
302 303 2.253610 CCTCCACAGTGGGTAGTAACA 58.746 52.381 20.14 0.00 38.32 2.41
303 304 2.254508 ACCTCCACAGTGGGTAGTAAC 58.745 52.381 20.14 0.00 38.32 2.50
304 305 2.708037 ACCTCCACAGTGGGTAGTAA 57.292 50.000 20.14 0.00 38.32 2.24
305 306 3.377253 CTACCTCCACAGTGGGTAGTA 57.623 52.381 20.14 16.08 44.30 1.82
306 307 2.233305 CTACCTCCACAGTGGGTAGT 57.767 55.000 20.14 15.82 44.30 2.73
308 309 3.181419 TGTTACTACCTCCACAGTGGGTA 60.181 47.826 20.14 13.24 38.32 3.69
309 310 2.254508 GTTACTACCTCCACAGTGGGT 58.745 52.381 20.14 12.79 38.32 4.51
310 311 2.253610 TGTTACTACCTCCACAGTGGG 58.746 52.381 20.14 10.16 38.32 4.61
311 312 4.954202 TCTATGTTACTACCTCCACAGTGG 59.046 45.833 14.19 14.19 39.43 4.00
312 313 5.652891 AGTCTATGTTACTACCTCCACAGTG 59.347 44.000 0.00 0.00 0.00 3.66
313 314 5.828871 AGTCTATGTTACTACCTCCACAGT 58.171 41.667 0.00 0.00 0.00 3.55
314 315 7.055378 ACTAGTCTATGTTACTACCTCCACAG 58.945 42.308 0.00 0.00 0.00 3.66
315 316 6.966751 ACTAGTCTATGTTACTACCTCCACA 58.033 40.000 0.00 0.00 0.00 4.17
316 317 8.835439 GTTACTAGTCTATGTTACTACCTCCAC 58.165 40.741 0.00 0.00 0.00 4.02
317 318 8.551440 TGTTACTAGTCTATGTTACTACCTCCA 58.449 37.037 0.00 0.00 0.00 3.86
318 319 8.970859 TGTTACTAGTCTATGTTACTACCTCC 57.029 38.462 0.00 0.00 0.00 4.30
346 347 9.401058 GGGAGTAACTTAGAGTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
347 348 8.845227 GGGGAGTAACTTAGAGTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
348 349 8.560039 TGGGGAGTAACTTAGAGTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
349 350 7.341512 GTGGGGAGTAACTTAGAGTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
350 351 6.660949 GTGGGGAGTAACTTAGAGTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
351 352 6.889177 AGTGGGGAGTAACTTAGAGTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
352 353 6.888632 CAGTGGGGAGTAACTTAGAGTAGTAA 59.111 42.308 0.00 0.00 0.00 2.24
353 354 6.012157 ACAGTGGGGAGTAACTTAGAGTAGTA 60.012 42.308 0.00 0.00 0.00 1.82
354 355 5.222296 ACAGTGGGGAGTAACTTAGAGTAGT 60.222 44.000 0.00 0.00 0.00 2.73
355 356 5.125739 CACAGTGGGGAGTAACTTAGAGTAG 59.874 48.000 0.00 0.00 0.00 2.57
356 357 5.014858 CACAGTGGGGAGTAACTTAGAGTA 58.985 45.833 0.00 0.00 0.00 2.59
357 358 3.833070 CACAGTGGGGAGTAACTTAGAGT 59.167 47.826 0.00 0.00 0.00 3.24
358 359 4.082136 GTCACAGTGGGGAGTAACTTAGAG 60.082 50.000 0.00 0.00 0.00 2.43
359 360 3.830755 GTCACAGTGGGGAGTAACTTAGA 59.169 47.826 0.00 0.00 0.00 2.10
360 361 3.833070 AGTCACAGTGGGGAGTAACTTAG 59.167 47.826 0.00 0.00 0.00 2.18
361 362 3.853207 AGTCACAGTGGGGAGTAACTTA 58.147 45.455 0.00 0.00 0.00 2.24
362 363 2.690840 AGTCACAGTGGGGAGTAACTT 58.309 47.619 0.00 0.00 0.00 2.66
363 364 2.400467 AGTCACAGTGGGGAGTAACT 57.600 50.000 0.00 0.00 0.00 2.24
364 365 3.163467 ACTAGTCACAGTGGGGAGTAAC 58.837 50.000 0.00 0.00 0.00 2.50
365 366 3.075582 AGACTAGTCACAGTGGGGAGTAA 59.924 47.826 24.44 0.00 0.00 2.24
366 367 2.648304 AGACTAGTCACAGTGGGGAGTA 59.352 50.000 24.44 0.00 0.00 2.59
367 368 1.429687 AGACTAGTCACAGTGGGGAGT 59.570 52.381 24.44 1.39 0.00 3.85
368 369 2.223803 AGACTAGTCACAGTGGGGAG 57.776 55.000 24.44 0.00 0.00 4.30
369 370 3.820195 TTAGACTAGTCACAGTGGGGA 57.180 47.619 24.44 0.00 0.00 4.81
370 371 4.884668 TTTTAGACTAGTCACAGTGGGG 57.115 45.455 24.44 0.00 0.00 4.96
371 372 5.046591 TCCATTTTAGACTAGTCACAGTGGG 60.047 44.000 24.44 17.30 0.00 4.61
372 373 6.037786 TCCATTTTAGACTAGTCACAGTGG 57.962 41.667 24.44 21.62 0.00 4.00
373 374 5.578727 GCTCCATTTTAGACTAGTCACAGTG 59.421 44.000 24.44 14.80 0.00 3.66
374 375 5.622460 CGCTCCATTTTAGACTAGTCACAGT 60.622 44.000 24.44 6.62 0.00 3.55
375 376 4.800993 CGCTCCATTTTAGACTAGTCACAG 59.199 45.833 24.44 7.98 0.00 3.66
376 377 4.461431 TCGCTCCATTTTAGACTAGTCACA 59.539 41.667 24.44 9.25 0.00 3.58
377 378 4.995124 TCGCTCCATTTTAGACTAGTCAC 58.005 43.478 24.44 0.00 0.00 3.67
378 379 4.440250 GCTCGCTCCATTTTAGACTAGTCA 60.440 45.833 24.44 8.16 0.00 3.41
379 380 4.045783 GCTCGCTCCATTTTAGACTAGTC 58.954 47.826 15.41 15.41 0.00 2.59
380 381 3.702045 AGCTCGCTCCATTTTAGACTAGT 59.298 43.478 0.00 0.00 0.00 2.57
381 382 4.047822 CAGCTCGCTCCATTTTAGACTAG 58.952 47.826 0.00 0.00 0.00 2.57
382 383 3.738281 GCAGCTCGCTCCATTTTAGACTA 60.738 47.826 1.48 0.00 37.77 2.59
383 384 2.898705 CAGCTCGCTCCATTTTAGACT 58.101 47.619 0.00 0.00 0.00 3.24
384 385 1.328986 GCAGCTCGCTCCATTTTAGAC 59.671 52.381 1.48 0.00 37.77 2.59
385 386 1.656652 GCAGCTCGCTCCATTTTAGA 58.343 50.000 1.48 0.00 37.77 2.10
397 398 4.454161 ACTCAGTACTGATATAGCAGCTCG 59.546 45.833 25.35 11.68 39.51 5.03
408 409 2.891580 ACACAACCGACTCAGTACTGAT 59.108 45.455 25.35 15.37 39.13 2.90
409 410 2.304092 ACACAACCGACTCAGTACTGA 58.696 47.619 23.80 23.80 38.06 3.41
516 520 4.999751 ACTCAAACGCTCTTCAGATTTC 57.000 40.909 0.00 0.00 0.00 2.17
528 532 2.860735 CAGCCTAGATGTACTCAAACGC 59.139 50.000 0.00 0.00 0.00 4.84
536 541 7.989416 ATCTAGAGTTACAGCCTAGATGTAC 57.011 40.000 15.63 0.00 44.22 2.90
562 568 7.151976 AGCAAAGGCAAACGAGTTAATTAAAT 58.848 30.769 0.00 0.00 44.61 1.40
581 587 3.561310 TCAGGCAATTATCGCTAGCAAAG 59.439 43.478 16.45 0.00 0.00 2.77
619 625 4.040584 AGAAGAAAAGACACTGGTACCCTC 59.959 45.833 10.07 0.00 0.00 4.30
620 626 3.974642 AGAAGAAAAGACACTGGTACCCT 59.025 43.478 10.07 0.00 0.00 4.34
623 629 5.050023 GCTGAAGAAGAAAAGACACTGGTAC 60.050 44.000 0.00 0.00 0.00 3.34
710 716 5.885912 ACCAAGACGCATTCCACTTTATTAT 59.114 36.000 0.00 0.00 0.00 1.28
711 717 5.250200 ACCAAGACGCATTCCACTTTATTA 58.750 37.500 0.00 0.00 0.00 0.98
714 720 3.134574 ACCAAGACGCATTCCACTTTA 57.865 42.857 0.00 0.00 0.00 1.85
715 721 1.981256 ACCAAGACGCATTCCACTTT 58.019 45.000 0.00 0.00 0.00 2.66
716 722 2.812011 GTTACCAAGACGCATTCCACTT 59.188 45.455 0.00 0.00 0.00 3.16
717 723 2.224426 TGTTACCAAGACGCATTCCACT 60.224 45.455 0.00 0.00 0.00 4.00
718 724 2.147958 TGTTACCAAGACGCATTCCAC 58.852 47.619 0.00 0.00 0.00 4.02
719 725 2.552599 TGTTACCAAGACGCATTCCA 57.447 45.000 0.00 0.00 0.00 3.53
720 726 4.393680 TGTATTGTTACCAAGACGCATTCC 59.606 41.667 0.00 0.00 43.98 3.01
721 727 5.539582 TGTATTGTTACCAAGACGCATTC 57.460 39.130 0.00 0.00 43.98 2.67
722 728 7.801716 ATATGTATTGTTACCAAGACGCATT 57.198 32.000 0.00 0.00 43.98 3.56
723 729 7.801716 AATATGTATTGTTACCAAGACGCAT 57.198 32.000 0.00 0.00 43.98 4.73
724 730 7.618502 AAATATGTATTGTTACCAAGACGCA 57.381 32.000 0.00 0.00 43.98 5.24
765 771 3.378427 GCCTTCACTTTACCCAGCATTAG 59.622 47.826 0.00 0.00 0.00 1.73
883 889 9.178758 AGATTAACTGGAGACCAATTAATGAAC 57.821 33.333 17.70 7.48 43.15 3.18
898 904 4.526970 GGCCTCATTTGAGATTAACTGGA 58.473 43.478 9.15 0.00 44.74 3.86
902 908 4.786425 AGAGGGCCTCATTTGAGATTAAC 58.214 43.478 33.86 3.53 44.74 2.01
961 968 0.463654 TTCTTGCAACCTGTCGCTGT 60.464 50.000 0.00 0.00 0.00 4.40
966 973 1.807142 GGCTACTTCTTGCAACCTGTC 59.193 52.381 0.00 0.00 0.00 3.51
1027 1034 0.681733 AAGAAGAGCACAAGGAGCGA 59.318 50.000 0.00 0.00 37.01 4.93
1053 1060 0.951558 ACGCCGTGAAAAAGAGCATT 59.048 45.000 0.00 0.00 0.00 3.56
1060 1067 1.935925 CGGAAGACGCCGTGAAAAA 59.064 52.632 0.00 0.00 46.07 1.94
1102 1109 1.525306 GGGAAGGAATAACCGGCGG 60.525 63.158 27.06 27.06 44.74 6.13
1104 1111 1.525306 CGGGGAAGGAATAACCGGC 60.525 63.158 0.00 0.00 44.74 6.13
1148 1197 3.003173 CTTCCCACGCCTCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
1155 1204 4.778143 ATGACGCCTTCCCACGCC 62.778 66.667 0.00 0.00 0.00 5.68
1168 1217 2.436646 CCTCGGTGCCACCATGAC 60.437 66.667 15.45 0.00 38.47 3.06
1197 1777 0.397535 GGTGTATAGGGTCCGGTCCA 60.398 60.000 19.75 0.00 0.00 4.02
1200 1780 1.713297 GATGGTGTATAGGGTCCGGT 58.287 55.000 0.00 0.00 0.00 5.28
1203 1783 1.617357 GGACGATGGTGTATAGGGTCC 59.383 57.143 0.00 0.00 36.11 4.46
1251 1831 2.190578 GCCTCCTCCGTTGATGGG 59.809 66.667 0.00 0.00 0.00 4.00
1376 1956 3.395702 TTGATGCGGGCGGTAGGT 61.396 61.111 0.00 0.00 0.00 3.08
1379 1959 2.125310 CTGTTGATGCGGGCGGTA 60.125 61.111 0.00 0.00 0.00 4.02
1386 1966 2.169789 CGCCTCCTCTGTTGATGCG 61.170 63.158 0.00 0.00 39.71 4.73
1407 1987 2.365068 CGCCACGATATCGCCTTCG 61.365 63.158 24.59 17.65 44.43 3.79
1434 2014 6.305512 ATGGGGTGTGATCCAAAAGGAACT 62.306 45.833 0.00 0.00 37.01 3.01
1442 2022 4.385865 GGTTATGTATGGGGTGTGATCCAA 60.386 45.833 0.00 0.00 36.54 3.53
1449 2029 1.567175 GGGTGGTTATGTATGGGGTGT 59.433 52.381 0.00 0.00 0.00 4.16
1450 2030 1.850345 AGGGTGGTTATGTATGGGGTG 59.150 52.381 0.00 0.00 0.00 4.61
1453 2033 1.494721 AGCAGGGTGGTTATGTATGGG 59.505 52.381 0.00 0.00 0.00 4.00
1464 2044 4.729918 GGCACTGGAGCAGGGTGG 62.730 72.222 0.00 0.00 37.20 4.61
1467 2047 2.898933 TTGAGGCACTGGAGCAGGG 61.899 63.158 0.00 0.00 41.55 4.45
1470 2050 2.431683 GGTTGAGGCACTGGAGCA 59.568 61.111 0.00 0.00 41.55 4.26
1471 2051 2.360475 GGGTTGAGGCACTGGAGC 60.360 66.667 0.00 0.00 41.55 4.70
1475 2055 1.152777 TGGTTGGGTTGAGGCACTG 60.153 57.895 0.00 0.00 41.55 3.66
1478 2058 2.203480 GCTGGTTGGGTTGAGGCA 60.203 61.111 0.00 0.00 0.00 4.75
1481 2061 0.606401 ACGATGCTGGTTGGGTTGAG 60.606 55.000 0.00 0.00 0.00 3.02
1482 2062 0.605319 GACGATGCTGGTTGGGTTGA 60.605 55.000 0.00 0.00 0.00 3.18
1494 2074 4.210304 GCCTTGCGTCGACGATGC 62.210 66.667 39.74 30.40 44.02 3.91
1521 2101 0.549902 TCCCCTCCTCCAAAGATGCA 60.550 55.000 0.00 0.00 0.00 3.96
1527 2107 0.550147 CTTCCCTCCCCTCCTCCAAA 60.550 60.000 0.00 0.00 0.00 3.28
1528 2108 1.082954 CTTCCCTCCCCTCCTCCAA 59.917 63.158 0.00 0.00 0.00 3.53
1538 2118 1.026718 CATGTTGTCGCCTTCCCTCC 61.027 60.000 0.00 0.00 0.00 4.30
1564 2144 0.853530 AAAACAGGAAGTGGCCTCCT 59.146 50.000 6.20 6.20 35.66 3.69
1583 2163 0.186386 ATGGTTTGGGTTTGGTCCGA 59.814 50.000 0.00 0.00 0.00 4.55
1590 2170 2.331166 GGGTGGTTATGGTTTGGGTTT 58.669 47.619 0.00 0.00 0.00 3.27
1602 2182 4.354162 GCCTTGGCGGGGTGGTTA 62.354 66.667 0.00 0.00 0.00 2.85
1658 2238 3.658757 AATGTAAAAGGCGCATGTGTT 57.341 38.095 10.83 0.00 0.00 3.32
1689 2269 8.438676 TTTATCTCTTATTTGCTAGTGCTTCC 57.561 34.615 0.00 0.00 40.48 3.46
1716 2296 4.624024 GCCCATTATTCAATCGATGCAATG 59.376 41.667 0.00 4.91 0.00 2.82
1718 2298 3.635836 TGCCCATTATTCAATCGATGCAA 59.364 39.130 0.00 0.00 0.00 4.08
1723 2303 5.240623 GGTTACATGCCCATTATTCAATCGA 59.759 40.000 0.00 0.00 0.00 3.59
1784 2364 5.863935 TCGATAATATTCAGACATGGCGAAG 59.136 40.000 10.74 0.00 0.00 3.79
1948 2529 8.667463 GCCCAAAACGTTGTTTATATTAGAGTA 58.333 33.333 0.00 0.00 32.40 2.59
1949 2530 7.532571 GCCCAAAACGTTGTTTATATTAGAGT 58.467 34.615 0.00 0.00 32.40 3.24
1950 2531 6.685403 CGCCCAAAACGTTGTTTATATTAGAG 59.315 38.462 0.00 0.00 32.40 2.43
2013 2595 1.148236 AGGGATGGGCCTAGTCTAGTC 59.852 57.143 4.53 0.00 36.66 2.59
2014 2596 1.148236 GAGGGATGGGCCTAGTCTAGT 59.852 57.143 4.53 0.00 36.66 2.57
2015 2597 1.551329 GGAGGGATGGGCCTAGTCTAG 60.551 61.905 4.53 0.00 36.66 2.43
2016 2598 0.487772 GGAGGGATGGGCCTAGTCTA 59.512 60.000 4.53 0.00 36.66 2.59
2017 2599 1.237458 GGAGGGATGGGCCTAGTCT 59.763 63.158 4.53 0.00 36.66 3.24
2018 2600 1.843832 GGGAGGGATGGGCCTAGTC 60.844 68.421 4.53 0.00 36.66 2.59
2059 2641 0.109132 GTTTGGATTTCTGCTGCCGG 60.109 55.000 0.00 0.00 0.00 6.13
2136 2718 3.134792 GAGCGAGCGAGTGGAGGA 61.135 66.667 0.00 0.00 0.00 3.71
2137 2719 4.544689 CGAGCGAGCGAGTGGAGG 62.545 72.222 0.00 0.00 0.00 4.30
2142 2724 3.871574 GAGAGCGAGCGAGCGAGT 61.872 66.667 1.41 0.00 43.00 4.18
2143 2725 4.605967 GGAGAGCGAGCGAGCGAG 62.606 72.222 1.41 0.00 43.00 5.03
2476 3061 0.883153 TGCAGCATTTACAGCCACAG 59.117 50.000 0.00 0.00 0.00 3.66
2483 3068 4.916983 AACTGAAACTGCAGCATTTACA 57.083 36.364 15.27 7.50 39.51 2.41
2512 3109 3.997021 ACTTTAGCATTTCTGACACTCGG 59.003 43.478 0.00 0.00 0.00 4.63
2522 3119 2.519963 GCTGGCGAACTTTAGCATTTC 58.480 47.619 0.00 0.00 36.24 2.17
2533 3130 4.179579 GATTGGCGGCTGGCGAAC 62.180 66.667 28.34 18.56 42.35 3.95
2537 3134 3.830192 CTTGGATTGGCGGCTGGC 61.830 66.667 13.15 13.15 42.51 4.85
2554 3151 3.742882 GCTTGCCCAGTTCAAGAAATTTC 59.257 43.478 10.33 10.33 42.52 2.17
2571 3168 3.608707 CGGAGAATGAATATGCAGCTTGC 60.609 47.826 0.00 1.70 45.29 4.01
2611 3211 3.901844 ACGTGCCCCTGATACTACAATAT 59.098 43.478 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.