Multiple sequence alignment - TraesCS5A01G466700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G466700 chr5A 100.000 4791 0 0 1 4791 645120079 645124869 0.000000e+00 8848.0
1 TraesCS5A01G466700 chr5A 78.795 415 52 17 1 381 645008357 645008769 3.700000e-61 246.0
2 TraesCS5A01G466700 chr5A 100.000 128 0 0 1587 1714 154345532 154345659 2.230000e-58 237.0
3 TraesCS5A01G466700 chr5A 81.944 288 44 8 99 381 645007050 645007334 2.230000e-58 237.0
4 TraesCS5A01G466700 chr5D 88.345 1613 100 40 3226 4776 517669388 517670974 0.000000e+00 1857.0
5 TraesCS5A01G466700 chr5D 85.911 1015 86 24 386 1356 517666014 517667015 0.000000e+00 1029.0
6 TraesCS5A01G466700 chr5D 89.516 372 34 5 1713 2081 517667322 517667691 2.610000e-127 466.0
7 TraesCS5A01G466700 chr5D 88.281 384 42 3 1 381 517611918 517612301 1.570000e-124 457.0
8 TraesCS5A01G466700 chr5D 91.450 269 17 5 2184 2449 517668002 517668267 9.800000e-97 364.0
9 TraesCS5A01G466700 chr5D 84.459 296 24 10 1027 1322 517667395 517667668 6.110000e-69 272.0
10 TraesCS5A01G466700 chr5D 80.524 267 49 3 118 381 517607029 517607295 8.130000e-48 202.0
11 TraesCS5A01G466700 chr5D 86.111 180 18 4 1356 1535 517667054 517667226 2.280000e-43 187.0
12 TraesCS5A01G466700 chr5D 90.265 113 7 3 2074 2182 517667744 517667856 1.390000e-30 145.0
13 TraesCS5A01G466700 chr5D 94.915 59 2 1 1531 1589 517667266 517667323 1.840000e-14 91.6
14 TraesCS5A01G466700 chr5B 89.951 816 42 16 3150 3930 650163165 650163975 0.000000e+00 1016.0
15 TraesCS5A01G466700 chr5B 85.821 938 80 22 426 1321 650159810 650160736 0.000000e+00 946.0
16 TraesCS5A01G466700 chr5B 85.280 856 65 27 3961 4791 650163972 650164791 0.000000e+00 826.0
17 TraesCS5A01G466700 chr5B 88.862 413 42 3 2184 2595 650161762 650162171 5.530000e-139 505.0
18 TraesCS5A01G466700 chr5B 85.979 378 40 8 1713 2081 650161090 650161463 4.490000e-105 392.0
19 TraesCS5A01G466700 chr5B 92.661 109 8 0 2074 2182 650161516 650161624 1.780000e-34 158.0
20 TraesCS5A01G466700 chr5B 76.829 246 33 9 1366 1589 650161518 650161761 3.030000e-22 117.0
21 TraesCS5A01G466700 chr5B 92.593 54 3 1 2440 2493 650160884 650160936 5.140000e-10 76.8
22 TraesCS5A01G466700 chr5B 100.000 28 0 0 1508 1535 650162133 650162160 9.000000e-03 52.8
23 TraesCS5A01G466700 chr4D 87.819 353 36 7 4018 4367 446988443 446988095 1.610000e-109 407.0
24 TraesCS5A01G466700 chr7A 87.465 359 36 7 4018 4372 643996074 643995721 5.770000e-109 405.0
25 TraesCS5A01G466700 chr7A 98.496 133 1 1 1587 1719 77440540 77440671 2.880000e-57 233.0
26 TraesCS5A01G466700 chr4A 87.395 357 40 5 4018 4372 17269189 17268836 5.770000e-109 405.0
27 TraesCS5A01G466700 chr3A 86.872 358 40 7 4018 4372 157989877 157989524 1.250000e-105 394.0
28 TraesCS5A01G466700 chr3A 99.254 134 0 1 1588 1721 569426550 569426418 1.720000e-59 241.0
29 TraesCS5A01G466700 chr3A 99.237 131 1 0 1585 1715 38671246 38671376 2.230000e-58 237.0
30 TraesCS5A01G466700 chr3A 98.519 135 1 1 1585 1719 481651439 481651572 2.230000e-58 237.0
31 TraesCS5A01G466700 chr2A 87.042 355 39 7 4018 4369 654734456 654734806 1.250000e-105 394.0
32 TraesCS5A01G466700 chr2A 97.163 141 3 1 1581 1721 43500215 43500354 2.230000e-58 237.0
33 TraesCS5A01G466700 chr3B 86.630 359 39 9 4018 4372 755565350 755564997 5.810000e-104 388.0
34 TraesCS5A01G466700 chr6B 86.275 357 46 3 4018 4372 18675253 18674898 7.520000e-103 385.0
35 TraesCS5A01G466700 chr1B 99.237 131 1 0 1588 1718 669017052 669017182 2.230000e-58 237.0
36 TraesCS5A01G466700 chr1A 99.231 130 1 0 1586 1715 12159683 12159812 8.020000e-58 235.0
37 TraesCS5A01G466700 chr6A 98.485 132 1 1 1583 1714 1814901 1815031 1.040000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G466700 chr5A 645120079 645124869 4790 False 8848.00 8848 100.0000 1 4791 1 chr5A.!!$F2 4790
1 TraesCS5A01G466700 chr5A 645007050 645008769 1719 False 241.50 246 80.3695 1 381 2 chr5A.!!$F3 380
2 TraesCS5A01G466700 chr5D 517666014 517670974 4960 False 551.45 1857 88.8715 386 4776 8 chr5D.!!$F3 4390
3 TraesCS5A01G466700 chr5B 650159810 650164791 4981 False 454.40 1016 88.6640 426 4791 9 chr5B.!!$F1 4365


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 1349 0.037303 CCCTCATGCTGGTGACAACT 59.963 55.0 0.0 0.0 42.06 3.16 F
1159 2545 0.822164 TCCGCCTCTAGCTGGTTAAC 59.178 55.0 0.0 0.0 40.39 2.01 F
1604 3082 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.0 0.0 0.00 4.30 F
2045 3531 0.181350 GGAGTTGCCTGGGACATAGG 59.819 60.0 0.0 0.0 38.20 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 2556 0.109226 GAACAAGAGTAGGACGCGCT 60.109 55.0 5.73 0.00 0.00 5.92 R
2750 4847 0.897621 TGGCATCACTGATCACTCGT 59.102 50.0 0.00 0.00 0.00 4.18 R
3468 5657 0.250467 ACCACTGTGCTAGCCAAGTG 60.250 55.0 27.81 27.81 0.00 3.16 R
3812 6021 0.863957 AACTTTTGCGCAAACGGACG 60.864 50.0 33.76 22.13 40.33 4.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 1335 3.636231 CTCAACGGTGCCCCCTCA 61.636 66.667 0.00 0.00 0.00 3.86
36 1345 2.273449 CCCCCTCATGCTGGTGAC 59.727 66.667 4.32 0.00 0.00 3.67
38 1347 1.379916 CCCCTCATGCTGGTGACAA 59.620 57.895 4.32 0.00 42.06 3.18
40 1349 0.037303 CCCTCATGCTGGTGACAACT 59.963 55.000 0.00 0.00 42.06 3.16
81 1390 7.747888 TGATGACGTTTCAACATTAATCGATT 58.252 30.769 16.15 16.15 34.61 3.34
85 1394 8.166066 TGACGTTTCAACATTAATCGATTACAG 58.834 33.333 17.33 14.36 0.00 2.74
113 1448 7.455953 TCTTTCATGCCACACTAGATAGGATAT 59.544 37.037 0.00 0.00 0.00 1.63
116 1451 8.664669 TCATGCCACACTAGATAGGATATAAA 57.335 34.615 0.00 0.00 0.00 1.40
121 1456 7.581464 GCCACACTAGATAGGATATAAATGCCA 60.581 40.741 0.00 0.00 0.00 4.92
129 1464 9.827198 AGATAGGATATAAATGCCAATTTTCCA 57.173 29.630 0.00 0.00 34.57 3.53
132 1467 8.266363 AGGATATAAATGCCAATTTTCCATGT 57.734 30.769 0.00 0.00 34.57 3.21
133 1468 8.716779 AGGATATAAATGCCAATTTTCCATGTT 58.283 29.630 0.00 0.00 34.57 2.71
139 1474 4.774124 TGCCAATTTTCCATGTTTTGTGA 58.226 34.783 0.00 0.00 0.00 3.58
144 1479 7.308710 GCCAATTTTCCATGTTTTGTGATTCAT 60.309 33.333 0.00 0.00 0.00 2.57
224 1560 2.754648 GCTCAGTGCATTGCTACGA 58.245 52.632 10.49 2.59 42.31 3.43
248 1584 2.715737 CGGAGCTAGACTAGGAATGC 57.284 55.000 11.48 0.00 0.00 3.56
249 1585 2.235016 CGGAGCTAGACTAGGAATGCT 58.765 52.381 11.48 2.36 0.00 3.79
250 1586 3.413327 CGGAGCTAGACTAGGAATGCTA 58.587 50.000 11.48 0.00 0.00 3.49
251 1587 3.438781 CGGAGCTAGACTAGGAATGCTAG 59.561 52.174 11.48 7.27 34.80 3.42
252 1588 4.658063 GGAGCTAGACTAGGAATGCTAGA 58.342 47.826 15.75 0.00 33.81 2.43
257 1596 1.621317 GACTAGGAATGCTAGAGGGGC 59.379 57.143 15.75 0.00 0.00 5.80
262 1601 1.212935 GGAATGCTAGAGGGGCAGAAA 59.787 52.381 0.00 0.00 43.15 2.52
273 1612 4.465413 GCAGAAAGCGGTGATTGC 57.535 55.556 0.00 0.00 0.00 3.56
276 1615 1.672881 GCAGAAAGCGGTGATTGCTAT 59.327 47.619 9.39 0.00 43.14 2.97
277 1616 2.540361 GCAGAAAGCGGTGATTGCTATG 60.540 50.000 9.39 0.00 43.14 2.23
278 1617 2.938451 CAGAAAGCGGTGATTGCTATGA 59.062 45.455 0.00 0.00 43.14 2.15
280 1619 4.009675 AGAAAGCGGTGATTGCTATGAAA 58.990 39.130 0.00 0.00 43.14 2.69
293 1632 9.571810 TGATTGCTATGAAACACAACATTAATC 57.428 29.630 0.00 0.00 0.00 1.75
294 1633 9.571810 GATTGCTATGAAACACAACATTAATCA 57.428 29.630 0.00 0.00 0.00 2.57
297 1636 9.409312 TGCTATGAAACACAACATTAATCAAAG 57.591 29.630 0.00 0.00 0.00 2.77
301 1640 7.551585 TGAAACACAACATTAATCAAAGTGGT 58.448 30.769 10.03 3.01 0.00 4.16
350 1691 3.611113 CGTGGTAGGTGTGTTTCTAATCG 59.389 47.826 0.00 0.00 0.00 3.34
353 1694 3.864003 GGTAGGTGTGTTTCTAATCGAGC 59.136 47.826 0.00 0.00 0.00 5.03
354 1695 2.973945 AGGTGTGTTTCTAATCGAGCC 58.026 47.619 0.00 0.00 0.00 4.70
355 1696 2.301870 AGGTGTGTTTCTAATCGAGCCA 59.698 45.455 0.00 0.00 0.00 4.75
361 1702 3.188460 TGTTTCTAATCGAGCCACAAAGC 59.812 43.478 0.00 0.00 0.00 3.51
371 1712 3.012518 GAGCCACAAAGCATCACTATGT 58.987 45.455 0.00 0.00 35.38 2.29
373 1714 2.749076 GCCACAAAGCATCACTATGTCA 59.251 45.455 0.00 0.00 35.38 3.58
381 1722 7.040201 ACAAAGCATCACTATGTCATTCAACTT 60.040 33.333 0.00 0.00 35.38 2.66
382 1723 8.453320 CAAAGCATCACTATGTCATTCAACTTA 58.547 33.333 0.00 0.00 35.38 2.24
383 1724 8.565896 AAGCATCACTATGTCATTCAACTTAA 57.434 30.769 0.00 0.00 35.38 1.85
384 1725 8.565896 AGCATCACTATGTCATTCAACTTAAA 57.434 30.769 0.00 0.00 35.38 1.52
533 1889 6.072112 TGGAGAAAATGTTTGTCTTAGTGC 57.928 37.500 0.00 0.00 0.00 4.40
539 1895 9.736023 AGAAAATGTTTGTCTTAGTGCTAAAAG 57.264 29.630 0.00 0.00 0.00 2.27
556 1912 9.769093 GTGCTAAAAGTGATCGTGTATTTTAAT 57.231 29.630 0.00 0.00 0.00 1.40
584 1940 7.827819 ATCATGTGATTGAAAAATGCTCTTG 57.172 32.000 0.00 0.00 0.00 3.02
602 1958 8.351495 TGCTCTTGTTTGAATAAAATGTTCAC 57.649 30.769 0.00 0.00 35.47 3.18
624 1982 9.737427 TTCACATGTATTTTTAAATGTTCACGT 57.263 25.926 0.00 0.00 30.98 4.49
645 2003 8.800031 TCACGTTTTAAAAGTGTTATGCTTTTC 58.200 29.630 19.58 0.30 42.85 2.29
682 2040 3.965379 AATGCAATTCTGATTGTGCCA 57.035 38.095 0.00 0.00 43.67 4.92
687 2045 3.863424 GCAATTCTGATTGTGCCATCAAG 59.137 43.478 1.63 0.00 43.67 3.02
707 2065 7.383102 TCAAGCAACTTGATCTTTATCTTCC 57.617 36.000 5.94 0.00 44.27 3.46
709 2067 5.196695 AGCAACTTGATCTTTATCTTCCCC 58.803 41.667 0.00 0.00 32.93 4.81
719 2077 3.634397 TTATCTTCCCCTGCACTTGAG 57.366 47.619 0.00 0.00 0.00 3.02
878 2251 1.696063 GCCCAGTACTATGGTCGGTA 58.304 55.000 11.23 0.00 38.81 4.02
899 2273 4.706842 ATGCGTTATTAATCCCCAGACT 57.293 40.909 0.00 0.00 0.00 3.24
907 2285 1.274703 AATCCCCAGACTGGCGACAT 61.275 55.000 16.72 3.34 41.51 3.06
1112 2498 4.115401 GTAACTAACCAACTACCTCCCG 57.885 50.000 0.00 0.00 0.00 5.14
1118 2504 1.517832 CAACTACCTCCCGCCTCTG 59.482 63.158 0.00 0.00 0.00 3.35
1120 2506 2.443016 CTACCTCCCGCCTCTGCT 60.443 66.667 0.00 0.00 34.43 4.24
1138 2524 2.187599 CTCCGCGCCCTTGTTTCTTG 62.188 60.000 0.00 0.00 0.00 3.02
1141 2527 1.081175 GCGCCCTTGTTTCTTGCTC 60.081 57.895 0.00 0.00 0.00 4.26
1155 2541 3.151022 GCTCCGCCTCTAGCTGGT 61.151 66.667 0.00 0.00 40.39 4.00
1157 2543 1.392710 GCTCCGCCTCTAGCTGGTTA 61.393 60.000 0.00 0.00 40.39 2.85
1159 2545 0.822164 TCCGCCTCTAGCTGGTTAAC 59.178 55.000 0.00 0.00 40.39 2.01
1160 2546 0.824759 CCGCCTCTAGCTGGTTAACT 59.175 55.000 5.42 0.00 40.39 2.24
1161 2547 1.471676 CCGCCTCTAGCTGGTTAACTG 60.472 57.143 5.42 0.36 40.39 3.16
1163 2549 2.094182 CGCCTCTAGCTGGTTAACTGAA 60.094 50.000 5.42 0.00 40.39 3.02
1164 2550 3.526534 GCCTCTAGCTGGTTAACTGAAG 58.473 50.000 5.42 2.68 38.99 3.02
1167 2553 3.173965 TCTAGCTGGTTAACTGAAGCCT 58.826 45.455 18.53 11.83 36.28 4.58
1169 2555 1.003696 AGCTGGTTAACTGAAGCCTCC 59.996 52.381 18.53 0.00 36.28 4.30
1170 2556 1.271379 GCTGGTTAACTGAAGCCTCCA 60.271 52.381 5.42 0.00 34.45 3.86
1171 2557 2.704572 CTGGTTAACTGAAGCCTCCAG 58.295 52.381 5.42 0.00 34.45 3.86
1172 2558 1.271379 TGGTTAACTGAAGCCTCCAGC 60.271 52.381 5.42 0.00 44.25 4.85
1195 2581 3.246619 CGTCCTACTCTTGTTCTTCTGC 58.753 50.000 0.00 0.00 0.00 4.26
1205 2591 2.143122 TGTTCTTCTGCCGTGATTGTC 58.857 47.619 0.00 0.00 0.00 3.18
1207 2593 2.370281 TCTTCTGCCGTGATTGTCTC 57.630 50.000 0.00 0.00 0.00 3.36
1210 2596 0.601057 TCTGCCGTGATTGTCTCGAA 59.399 50.000 3.32 0.00 35.64 3.71
1242 2628 2.826428 TCTAGATGCGTGATGCTTTCC 58.174 47.619 0.00 0.00 46.63 3.13
1254 2640 5.050499 CGTGATGCTTTCCTTGACTGATATC 60.050 44.000 0.00 0.00 0.00 1.63
1260 2646 6.384015 TGCTTTCCTTGACTGATATCCTCTTA 59.616 38.462 0.00 0.00 0.00 2.10
1322 2711 6.495181 CCTGGGACATAGATCAGTTACTGTAT 59.505 42.308 12.41 4.80 38.20 2.29
1327 2725 9.988815 GGACATAGATCAGTTACTGTATCATTT 57.011 33.333 12.41 0.00 32.61 2.32
1364 2762 5.856126 CAGTCGTGCTAATTAGGTTTGAA 57.144 39.130 14.28 0.00 0.00 2.69
1365 2763 5.858475 CAGTCGTGCTAATTAGGTTTGAAG 58.142 41.667 14.28 0.00 0.00 3.02
1367 2765 6.147164 CAGTCGTGCTAATTAGGTTTGAAGAA 59.853 38.462 14.28 0.00 0.00 2.52
1368 2766 6.147328 AGTCGTGCTAATTAGGTTTGAAGAAC 59.853 38.462 14.28 0.00 0.00 3.01
1394 2828 5.539048 ACCTGGTATGTCGAACTTATATGC 58.461 41.667 0.00 0.00 0.00 3.14
1408 2842 7.495934 CGAACTTATATGCCTATCTTTATGGGG 59.504 40.741 0.00 0.00 34.35 4.96
1419 2853 3.096092 TCTTTATGGGGCAATGTCAACC 58.904 45.455 0.00 0.00 0.00 3.77
1421 2855 2.142356 TATGGGGCAATGTCAACCAG 57.858 50.000 0.00 0.00 34.23 4.00
1486 2920 3.500343 AGGTGGAATTGCTTACTGCTTT 58.500 40.909 0.00 0.00 43.37 3.51
1488 2922 4.344968 AGGTGGAATTGCTTACTGCTTTTT 59.655 37.500 0.00 0.00 43.37 1.94
1589 3067 4.999311 CCAACCCAGTACCAAGTTTACTAC 59.001 45.833 0.00 0.00 0.00 2.73
1590 3068 5.221783 CCAACCCAGTACCAAGTTTACTACT 60.222 44.000 0.00 0.00 39.32 2.57
1591 3069 5.735285 ACCCAGTACCAAGTTTACTACTC 57.265 43.478 0.00 0.00 35.54 2.59
1592 3070 4.529769 ACCCAGTACCAAGTTTACTACTCC 59.470 45.833 0.00 0.00 35.54 3.85
1593 3071 4.081254 CCCAGTACCAAGTTTACTACTCCC 60.081 50.000 0.00 0.00 35.54 4.30
1594 3072 4.776308 CCAGTACCAAGTTTACTACTCCCT 59.224 45.833 0.00 0.00 35.54 4.20
1595 3073 5.105432 CCAGTACCAAGTTTACTACTCCCTC 60.105 48.000 0.00 0.00 35.54 4.30
1596 3074 5.022122 AGTACCAAGTTTACTACTCCCTCC 58.978 45.833 0.00 0.00 35.54 4.30
1597 3075 2.830321 ACCAAGTTTACTACTCCCTCCG 59.170 50.000 0.00 0.00 35.54 4.63
1598 3076 2.830321 CCAAGTTTACTACTCCCTCCGT 59.170 50.000 0.00 0.00 35.54 4.69
1599 3077 3.260128 CCAAGTTTACTACTCCCTCCGTT 59.740 47.826 0.00 0.00 35.54 4.44
1600 3078 4.492611 CAAGTTTACTACTCCCTCCGTTC 58.507 47.826 0.00 0.00 35.54 3.95
1601 3079 3.095332 AGTTTACTACTCCCTCCGTTCC 58.905 50.000 0.00 0.00 28.23 3.62
1602 3080 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
1603 3081 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1604 3082 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1605 3083 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1606 3084 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1607 3085 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1608 3086 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1609 3087 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1610 3088 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1611 3089 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1612 3090 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1613 3091 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1614 3092 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1615 3093 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1616 3094 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
1617 3095 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
1618 3096 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
1619 3097 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
1620 3098 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
1621 3099 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
1622 3100 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
1623 3101 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
1624 3102 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
1625 3103 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
1626 3104 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
1627 3105 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
1628 3106 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
1629 3107 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
1631 3109 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1632 3110 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1633 3111 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
1634 3112 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1635 3113 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
1636 3114 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
1637 3115 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
1638 3116 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
1639 3117 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
1655 3133 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
1656 3134 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
1657 3135 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
1658 3136 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
1661 3139 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
1665 3143 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
1666 3144 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
1667 3145 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
1668 3146 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
1669 3147 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
1670 3148 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
1671 3149 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
1672 3150 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
1684 3162 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
1685 3163 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
1686 3164 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
1687 3165 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
1688 3166 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
1689 3167 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
1690 3168 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
1691 3169 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1692 3170 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1693 3171 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
1704 3182 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
1705 3183 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
1706 3184 7.223260 TCTAAGACAAGTAATTCAGAACGGA 57.777 36.000 0.00 0.00 0.00 4.69
1707 3185 7.313646 TCTAAGACAAGTAATTCAGAACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
1708 3186 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
1709 3187 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1710 3188 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1711 3189 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1712 3190 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
1713 3191 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
1718 3196 3.552875 TCAGAACGGAGGGAGTAGTATG 58.447 50.000 0.00 0.00 0.00 2.39
1726 3204 1.576272 AGGGAGTAGTATGGAGCCACT 59.424 52.381 0.00 0.00 0.00 4.00
1731 3209 2.108168 GTAGTATGGAGCCACTGGACA 58.892 52.381 0.00 0.00 0.00 4.02
1743 3221 0.249911 ACTGGACAAGTGGAAGCGTC 60.250 55.000 0.00 0.00 37.88 5.19
1747 3225 2.113243 GACAAGTGGAAGCGTCCCCT 62.113 60.000 16.54 7.08 44.23 4.79
1749 3227 2.593956 AAGTGGAAGCGTCCCCTCC 61.594 63.158 16.54 1.71 44.23 4.30
1777 3256 6.267471 CCTGCACATAAATACCAACCCAATAT 59.733 38.462 0.00 0.00 0.00 1.28
1784 3263 5.845391 AATACCAACCCAATATCAAACCG 57.155 39.130 0.00 0.00 0.00 4.44
1788 3267 2.032680 ACCCAATATCAAACCGTCGG 57.967 50.000 10.48 10.48 0.00 4.79
1816 3295 3.119096 GTTTCGCCGCTCCTGGAC 61.119 66.667 0.00 0.00 0.00 4.02
1825 3304 2.898738 CTCCTGGACGCATCTGCT 59.101 61.111 0.00 0.00 39.32 4.24
1840 3319 2.254651 GCTTCCGACGACGAGTGT 59.745 61.111 9.28 0.00 42.66 3.55
1860 3339 0.686789 GGTAACCAACTACCACCCGT 59.313 55.000 0.00 0.00 41.03 5.28
1861 3340 1.608801 GGTAACCAACTACCACCCGTG 60.609 57.143 0.00 0.00 41.03 4.94
1940 3426 3.173151 TCCTACTCATGTTCTTCTGCCA 58.827 45.455 0.00 0.00 0.00 4.92
1963 3449 5.551305 TGATTGTCTTGAAGAGGAGTTCA 57.449 39.130 0.00 0.00 34.56 3.18
1981 3467 2.759191 TCAATCTAGATGCGTGATGCC 58.241 47.619 5.86 0.00 45.60 4.40
1984 3470 2.988010 TCTAGATGCGTGATGCCTTT 57.012 45.000 0.00 0.00 45.60 3.11
1985 3471 2.826428 TCTAGATGCGTGATGCCTTTC 58.174 47.619 0.00 0.00 45.60 2.62
2020 3506 2.292569 TCTTGCTCGTACCCATCGTATC 59.707 50.000 0.00 0.00 0.00 2.24
2045 3531 0.181350 GGAGTTGCCTGGGACATAGG 59.819 60.000 0.00 0.00 38.20 2.57
2108 3654 4.328169 GGTGTGTTGAAGTTATACGCCTAC 59.672 45.833 0.00 0.00 38.53 3.18
2148 3698 4.514066 CCGTAAACTGGTTGAAACTAGCTT 59.486 41.667 6.48 3.90 40.73 3.74
2150 3700 6.134061 CGTAAACTGGTTGAAACTAGCTTTC 58.866 40.000 6.48 9.52 40.73 2.62
2182 3732 7.712205 ACAATTTTGAGAAATTTGAGGTGGAAG 59.288 33.333 0.00 0.00 42.14 3.46
2187 3881 3.766051 AGAAATTTGAGGTGGAAGGCATC 59.234 43.478 0.00 0.00 0.00 3.91
2262 3959 7.962995 ACCTTCACAACTCTCTCTGATAATA 57.037 36.000 0.00 0.00 0.00 0.98
2295 3992 1.702401 TGATGGCAACTGAAGGGTACA 59.298 47.619 0.00 0.00 37.61 2.90
2300 3997 3.964031 TGGCAACTGAAGGGTACAATTTT 59.036 39.130 0.00 0.00 37.61 1.82
2301 3998 4.038642 TGGCAACTGAAGGGTACAATTTTC 59.961 41.667 0.00 0.00 37.61 2.29
2345 4042 9.355916 GCTTAAATATGAACCCTTTCCTCTATT 57.644 33.333 0.00 0.00 0.00 1.73
2382 4079 0.523072 CAATCTGCACAAGGTTCGGG 59.477 55.000 0.00 0.00 0.00 5.14
2468 4165 5.337554 GTTGGAAACTAGTTGTGTTGGAAC 58.662 41.667 9.34 2.63 45.32 3.62
2493 4190 5.069119 AGTTTTGAGGAATTTGAGGTGGAAC 59.931 40.000 0.00 0.00 0.00 3.62
2518 4215 2.058593 AGCCTACTATTGCTTTGGGC 57.941 50.000 0.00 0.00 42.22 5.36
2527 4224 5.591099 ACTATTGCTTTGGGCGATATTTTG 58.409 37.500 0.00 0.00 43.87 2.44
2580 4278 9.862371 TTAAAACATCTGCTAGTTAGAAGAGAG 57.138 33.333 3.38 1.67 41.18 3.20
2616 4711 8.652810 AAAAGATTGCACAAAATATATGCCTC 57.347 30.769 0.00 0.00 38.63 4.70
2627 4722 2.346766 ATATGCCTCCATTTGTCGCA 57.653 45.000 0.00 0.00 32.85 5.10
2631 4726 0.527565 GCCTCCATTTGTCGCACATT 59.472 50.000 0.00 0.00 0.00 2.71
2640 4735 5.323900 CATTTGTCGCACATTAGTACCAAG 58.676 41.667 0.00 0.00 0.00 3.61
2641 4736 3.671008 TGTCGCACATTAGTACCAAGT 57.329 42.857 0.00 0.00 0.00 3.16
2644 4739 3.991773 GTCGCACATTAGTACCAAGTCAA 59.008 43.478 0.00 0.00 0.00 3.18
2645 4740 4.630069 GTCGCACATTAGTACCAAGTCAAT 59.370 41.667 0.00 0.00 0.00 2.57
2656 4751 6.010219 AGTACCAAGTCAATGCCAAGTTTAT 58.990 36.000 0.00 0.00 0.00 1.40
2667 4762 6.780457 ATGCCAAGTTTATTAGCATTGAGT 57.220 33.333 0.00 0.00 41.19 3.41
2673 4768 7.011389 CCAAGTTTATTAGCATTGAGTCATCGA 59.989 37.037 0.00 0.00 0.00 3.59
2691 4788 3.642705 TCGATCTTGATATCTTGGTGCG 58.357 45.455 3.98 1.79 0.00 5.34
2707 4804 1.207329 GTGCGTTATGAGGAGTCCCTT 59.793 52.381 5.25 0.00 44.53 3.95
2708 4805 1.480954 TGCGTTATGAGGAGTCCCTTC 59.519 52.381 5.25 0.00 44.53 3.46
2720 4817 3.604582 GAGTCCCTTCTGATTCACCTTG 58.395 50.000 0.00 0.00 0.00 3.61
2723 4820 3.944015 GTCCCTTCTGATTCACCTTGATG 59.056 47.826 0.00 0.00 0.00 3.07
2731 4828 6.169094 TCTGATTCACCTTGATGACTCTTTC 58.831 40.000 0.00 0.00 31.37 2.62
2732 4829 6.013898 TCTGATTCACCTTGATGACTCTTTCT 60.014 38.462 0.00 0.00 31.37 2.52
2733 4830 5.936372 TGATTCACCTTGATGACTCTTTCTG 59.064 40.000 0.00 0.00 31.37 3.02
2734 4831 5.551305 TTCACCTTGATGACTCTTTCTGA 57.449 39.130 0.00 0.00 0.00 3.27
2735 4832 5.752036 TCACCTTGATGACTCTTTCTGAT 57.248 39.130 0.00 0.00 0.00 2.90
2736 4833 6.857437 TCACCTTGATGACTCTTTCTGATA 57.143 37.500 0.00 0.00 0.00 2.15
2738 4835 7.855375 TCACCTTGATGACTCTTTCTGATAAT 58.145 34.615 0.00 0.00 0.00 1.28
2739 4836 8.981659 TCACCTTGATGACTCTTTCTGATAATA 58.018 33.333 0.00 0.00 0.00 0.98
2740 4837 9.039870 CACCTTGATGACTCTTTCTGATAATAC 57.960 37.037 0.00 0.00 0.00 1.89
2780 4877 1.985159 AGTGATGCCAACTGAAGGGTA 59.015 47.619 0.00 0.00 0.00 3.69
2781 4878 2.375174 AGTGATGCCAACTGAAGGGTAA 59.625 45.455 0.00 0.00 0.00 2.85
2788 4885 4.079253 GCCAACTGAAGGGTAAGATTTGA 58.921 43.478 0.00 0.00 0.00 2.69
2789 4886 4.522789 GCCAACTGAAGGGTAAGATTTGAA 59.477 41.667 0.00 0.00 0.00 2.69
2828 4925 6.260700 TGCTTAAATATGAGCCCTTTCCTA 57.739 37.500 4.20 0.00 37.37 2.94
2846 4950 4.234550 TCCTATATGACAGGAGGCAATGT 58.765 43.478 0.00 0.00 37.27 2.71
2857 4961 4.101585 CAGGAGGCAATGTAGACAATCCTA 59.898 45.833 0.00 0.00 34.21 2.94
2863 4967 7.293073 AGGCAATGTAGACAATCCTAATTGAT 58.707 34.615 5.22 0.00 44.25 2.57
2875 4979 8.937634 CAATCCTAATTGATTGGAAAAAGGAG 57.062 34.615 9.58 0.00 45.04 3.69
2878 4982 6.071391 TCCTAATTGATTGGAAAAAGGAGTGC 60.071 38.462 0.00 0.00 0.00 4.40
2884 4988 7.630242 TGATTGGAAAAAGGAGTGCTATTAG 57.370 36.000 0.00 0.00 0.00 1.73
2920 5024 7.688167 GTGATAATCACAAGTTGTTCATGTACG 59.312 37.037 5.57 0.00 46.22 3.67
2929 5033 5.479306 AGTTGTTCATGTACGTCATAGCTT 58.521 37.500 0.00 0.00 34.67 3.74
2939 5043 7.096884 TGTACGTCATAGCTTTCTAATCAGT 57.903 36.000 0.00 0.00 0.00 3.41
2942 5046 9.680315 GTACGTCATAGCTTTCTAATCAGTATT 57.320 33.333 0.00 0.00 0.00 1.89
2964 5068 6.681729 TTTGGTCACAGAGATACCTAAACT 57.318 37.500 0.00 0.00 34.23 2.66
2981 5085 6.621613 CCTAAACTAGGTTCCATTTCTTTGC 58.378 40.000 0.00 0.00 41.18 3.68
2983 5087 4.015872 ACTAGGTTCCATTTCTTTGCGA 57.984 40.909 0.00 0.00 0.00 5.10
2986 5090 4.015872 AGGTTCCATTTCTTTGCGAGTA 57.984 40.909 0.00 0.00 0.00 2.59
3026 5130 9.986833 ATTGTTTTTGTTTCTTAAAGCATTGAC 57.013 25.926 0.00 0.00 0.00 3.18
3027 5131 8.539770 TGTTTTTGTTTCTTAAAGCATTGACA 57.460 26.923 0.00 0.00 0.00 3.58
3028 5132 8.439286 TGTTTTTGTTTCTTAAAGCATTGACAC 58.561 29.630 0.00 0.00 0.00 3.67
3029 5133 6.804534 TTTGTTTCTTAAAGCATTGACACG 57.195 33.333 0.00 0.00 0.00 4.49
3030 5134 4.286910 TGTTTCTTAAAGCATTGACACGC 58.713 39.130 0.00 0.00 0.00 5.34
3087 5208 9.646427 GAGACTTATATGCTATTAACTCCCTTG 57.354 37.037 0.00 0.00 0.00 3.61
3093 5214 3.133362 TGCTATTAACTCCCTTGTACCGG 59.867 47.826 0.00 0.00 0.00 5.28
3100 5226 1.140252 CTCCCTTGTACCGGGTTATGG 59.860 57.143 4.31 7.00 42.56 2.74
3120 5246 3.007940 TGGTAGTGACTTGCTTGCACTAT 59.992 43.478 0.00 0.00 44.21 2.12
3121 5247 4.221924 TGGTAGTGACTTGCTTGCACTATA 59.778 41.667 0.00 0.00 44.21 1.31
3122 5248 4.806247 GGTAGTGACTTGCTTGCACTATAG 59.194 45.833 0.00 0.00 44.21 1.31
3190 5365 1.364626 CTGATGCAGGGACGCTGTTC 61.365 60.000 19.53 16.31 0.00 3.18
3192 5367 1.364626 GATGCAGGGACGCTGTTCTG 61.365 60.000 19.53 0.00 0.00 3.02
3207 5382 6.761242 ACGCTGTTCTGCACATATTTATTCTA 59.239 34.615 2.98 0.00 33.76 2.10
3209 5384 7.065894 GCTGTTCTGCACATATTTATTCTACG 58.934 38.462 0.00 0.00 33.76 3.51
3240 5415 2.988493 CAAACATACATGTGCCAACTGC 59.012 45.455 9.11 0.00 41.61 4.40
3242 5417 3.348647 ACATACATGTGCCAACTGCTA 57.651 42.857 9.11 0.00 40.03 3.49
3243 5418 3.009723 ACATACATGTGCCAACTGCTAC 58.990 45.455 9.11 0.00 40.03 3.58
3401 5582 1.004745 GCAAGGGATCCTGAACCTCAA 59.995 52.381 12.58 0.00 32.13 3.02
3412 5593 1.689813 TGAACCTCAACAGGCGAGTTA 59.310 47.619 0.00 0.00 45.05 2.24
3436 5617 1.154035 CTTTTCGCCGCAATGTCCC 60.154 57.895 0.00 0.00 0.00 4.46
3439 5620 4.812476 TCGCCGCAATGTCCCTCG 62.812 66.667 0.00 0.00 0.00 4.63
3441 5622 2.746277 GCCGCAATGTCCCTCGTT 60.746 61.111 0.00 0.00 0.00 3.85
3450 5639 4.202121 GCAATGTCCCTCGTTAGATCAGTA 60.202 45.833 0.00 0.00 0.00 2.74
3451 5640 5.681437 GCAATGTCCCTCGTTAGATCAGTAA 60.681 44.000 0.00 0.00 0.00 2.24
3455 5644 5.421056 TGTCCCTCGTTAGATCAGTAAATGT 59.579 40.000 0.00 0.00 0.00 2.71
3468 5657 8.784043 AGATCAGTAAATGTAACTTGAACAACC 58.216 33.333 0.00 0.00 0.00 3.77
3475 5664 2.959507 AACTTGAACAACCACTTGGC 57.040 45.000 0.00 0.00 39.32 4.52
3480 5669 1.133945 TGAACAACCACTTGGCTAGCA 60.134 47.619 18.24 0.00 39.32 3.49
3493 5702 1.804748 GGCTAGCACAGTGGTGTAAAC 59.195 52.381 18.24 0.26 46.95 2.01
3514 5723 4.323417 ACTCGTATTTGAATGAACAGGCA 58.677 39.130 0.00 0.00 0.00 4.75
3533 5742 6.385467 ACAGGCAAAAGAGGAGAAGATATACT 59.615 38.462 0.00 0.00 0.00 2.12
3595 5804 0.666374 AACTTAACACAGTTGGCCGC 59.334 50.000 0.00 0.00 35.57 6.53
3697 5906 1.003442 AGAGCTCATGGGGGCTGTA 59.997 57.895 17.77 0.00 39.05 2.74
3766 5975 0.755698 ACCCACACTGTCGTGAGTCT 60.756 55.000 10.56 0.00 43.97 3.24
3784 5993 5.306937 TGAGTCTGAGTTTGATAGGAAACCA 59.693 40.000 0.00 0.00 36.63 3.67
3812 6021 0.538977 AGGTGGCTGCCATATGATGC 60.539 55.000 26.22 9.71 35.28 3.91
3830 6039 1.298041 CGTCCGTTTGCGCAAAAGT 60.298 52.632 35.23 0.00 36.67 2.66
3903 6112 7.965107 GTCTTTGTTATCTGCAAGTTTATGAGG 59.035 37.037 0.00 0.00 33.76 3.86
3937 6146 6.942005 CCAATGGTATTCTATGGTATGCAGAA 59.058 38.462 0.00 0.00 33.12 3.02
3959 6168 8.499967 CAGAATCTCATGAATCTTGCTAGAATG 58.500 37.037 0.99 2.16 30.57 2.67
3960 6169 8.212312 AGAATCTCATGAATCTTGCTAGAATGT 58.788 33.333 0.99 0.00 28.67 2.71
3961 6170 7.731882 ATCTCATGAATCTTGCTAGAATGTG 57.268 36.000 0.99 3.46 33.20 3.21
3962 6171 6.053650 TCTCATGAATCTTGCTAGAATGTGG 58.946 40.000 0.99 1.24 33.20 4.17
3963 6172 5.748402 TCATGAATCTTGCTAGAATGTGGT 58.252 37.500 0.99 0.00 33.20 4.16
3964 6173 6.182627 TCATGAATCTTGCTAGAATGTGGTT 58.817 36.000 0.99 0.00 33.20 3.67
3965 6174 6.660521 TCATGAATCTTGCTAGAATGTGGTTT 59.339 34.615 0.99 0.00 33.20 3.27
3966 6175 7.828717 TCATGAATCTTGCTAGAATGTGGTTTA 59.171 33.333 0.99 0.00 33.20 2.01
3967 6176 7.615582 TGAATCTTGCTAGAATGTGGTTTAG 57.384 36.000 0.99 0.00 33.20 1.85
3968 6177 7.168219 TGAATCTTGCTAGAATGTGGTTTAGT 58.832 34.615 0.99 0.00 33.20 2.24
3969 6178 7.665559 TGAATCTTGCTAGAATGTGGTTTAGTT 59.334 33.333 0.99 0.00 33.20 2.24
3970 6179 6.801539 TCTTGCTAGAATGTGGTTTAGTTG 57.198 37.500 0.00 0.00 0.00 3.16
3971 6180 6.296026 TCTTGCTAGAATGTGGTTTAGTTGT 58.704 36.000 0.00 0.00 0.00 3.32
3972 6181 6.770785 TCTTGCTAGAATGTGGTTTAGTTGTT 59.229 34.615 0.00 0.00 0.00 2.83
3973 6182 6.952773 TGCTAGAATGTGGTTTAGTTGTTT 57.047 33.333 0.00 0.00 0.00 2.83
3974 6183 6.734137 TGCTAGAATGTGGTTTAGTTGTTTG 58.266 36.000 0.00 0.00 0.00 2.93
3975 6184 6.320164 TGCTAGAATGTGGTTTAGTTGTTTGT 59.680 34.615 0.00 0.00 0.00 2.83
3976 6185 7.147983 TGCTAGAATGTGGTTTAGTTGTTTGTT 60.148 33.333 0.00 0.00 0.00 2.83
4008 6217 2.515926 TGAGATGAATCTGTAGCGGC 57.484 50.000 0.00 0.00 37.25 6.53
4034 6255 6.183360 GGCATGTGCTTATGTGTAGATTCTTT 60.183 38.462 4.84 0.00 41.70 2.52
4035 6256 6.690098 GCATGTGCTTATGTGTAGATTCTTTG 59.310 38.462 0.00 0.00 38.21 2.77
4037 6258 5.123820 TGTGCTTATGTGTAGATTCTTTGCC 59.876 40.000 0.00 0.00 0.00 4.52
4038 6259 5.355350 GTGCTTATGTGTAGATTCTTTGCCT 59.645 40.000 0.00 0.00 0.00 4.75
4040 6261 5.008118 GCTTATGTGTAGATTCTTTGCCTCC 59.992 44.000 0.00 0.00 0.00 4.30
4042 6263 4.640771 TGTGTAGATTCTTTGCCTCCTT 57.359 40.909 0.00 0.00 0.00 3.36
4054 6275 5.128499 TCTTTGCCTCCTTGTTGAAATTTGA 59.872 36.000 0.00 0.00 0.00 2.69
4055 6276 5.549742 TTGCCTCCTTGTTGAAATTTGAT 57.450 34.783 0.00 0.00 0.00 2.57
4059 6280 6.041409 TGCCTCCTTGTTGAAATTTGATGTTA 59.959 34.615 0.00 0.00 0.00 2.41
4060 6281 6.928492 GCCTCCTTGTTGAAATTTGATGTTAA 59.072 34.615 0.00 0.00 0.00 2.01
4070 6291 7.531716 TGAAATTTGATGTTAATGGTACCGAC 58.468 34.615 7.57 4.12 0.00 4.79
4089 6310 4.755123 CCGACGCCATTCTATATTTTTCCT 59.245 41.667 0.00 0.00 0.00 3.36
4105 6333 4.685169 TTTCCTCAATTGCTTGATCGAC 57.315 40.909 0.00 0.00 40.52 4.20
4120 6348 3.512680 GATCGACCGATCTTGAACTGTT 58.487 45.455 21.15 0.00 45.42 3.16
4128 6356 4.214437 CGATCTTGAACTGTTGAAAGTGC 58.786 43.478 0.00 0.00 0.00 4.40
4135 6363 4.398988 TGAACTGTTGAAAGTGCTCACAAT 59.601 37.500 0.00 0.00 0.00 2.71
4145 6373 6.972328 TGAAAGTGCTCACAATCTTAACAAAC 59.028 34.615 2.63 0.00 0.00 2.93
4156 6384 4.911514 TCTTAACAAACACAGGGCTTTC 57.088 40.909 0.00 0.00 0.00 2.62
4157 6385 3.314080 TCTTAACAAACACAGGGCTTTCG 59.686 43.478 0.00 0.00 0.00 3.46
4158 6386 0.102300 AACAAACACAGGGCTTTCGC 59.898 50.000 0.00 0.00 0.00 4.70
4159 6387 0.751643 ACAAACACAGGGCTTTCGCT 60.752 50.000 0.00 0.00 36.09 4.93
4169 6399 1.656652 GGCTTTCGCTTCTATGCAGA 58.343 50.000 0.00 0.00 36.09 4.26
4174 6404 2.760634 TCGCTTCTATGCAGAACCAA 57.239 45.000 0.00 0.00 35.82 3.67
4187 6417 3.672511 GCAGAACCAAATGCAGTCATGAG 60.673 47.826 0.00 0.00 42.11 2.90
4255 6493 5.728351 TGATTTACATACGGCTTTACAGC 57.272 39.130 0.00 0.00 46.52 4.40
4292 6533 1.473258 AGCAAGTCATCTCTCTCGCT 58.527 50.000 0.00 0.00 0.00 4.93
4309 6550 1.319799 CTGGAAGGGGGAGGAGGAT 59.680 63.158 0.00 0.00 0.00 3.24
4411 6652 2.293677 GGAGAAGCCGAAGATGACGATA 59.706 50.000 0.00 0.00 0.00 2.92
4481 6722 3.639094 AGTCTGCCAGTACCTACATCATC 59.361 47.826 0.00 0.00 0.00 2.92
4508 6749 6.193504 TCATCATCCATTTTATCCACACCAA 58.806 36.000 0.00 0.00 0.00 3.67
4512 6753 6.666980 TCATCCATTTTATCCACACCAATTGA 59.333 34.615 7.12 0.00 0.00 2.57
4514 6755 5.186797 TCCATTTTATCCACACCAATTGACC 59.813 40.000 7.12 0.00 0.00 4.02
4516 6757 5.461032 TTTTATCCACACCAATTGACCAC 57.539 39.130 7.12 0.00 0.00 4.16
4517 6758 2.673775 ATCCACACCAATTGACCACA 57.326 45.000 7.12 0.00 0.00 4.17
4529 6779 3.401033 TTGACCACAGACCACACATAG 57.599 47.619 0.00 0.00 0.00 2.23
4540 6790 6.381133 ACAGACCACACATAGATGAACTCATA 59.619 38.462 0.00 0.00 36.57 2.15
4545 6795 9.716531 ACCACACATAGATGAACTCATAATATG 57.283 33.333 15.99 15.99 39.52 1.78
4564 6814 1.697982 TGGATCATGAGAGCTGATGGG 59.302 52.381 0.09 0.00 33.56 4.00
4569 6819 0.180642 ATGAGAGCTGATGGGTGCAG 59.819 55.000 0.00 0.00 36.47 4.41
4585 6841 2.475666 CAGGCTTGCTTACTGCTCC 58.524 57.895 0.00 0.00 43.37 4.70
4650 6906 0.909610 TCTCCATCTCCACCACCACC 60.910 60.000 0.00 0.00 0.00 4.61
4651 6907 1.151921 TCCATCTCCACCACCACCA 60.152 57.895 0.00 0.00 0.00 4.17
4652 6908 1.002134 CCATCTCCACCACCACCAC 60.002 63.158 0.00 0.00 0.00 4.16
4669 6925 0.034186 CACCACCACCACCTGCATAT 60.034 55.000 0.00 0.00 0.00 1.78
4672 6928 1.211703 CCACCACCACCTGCATATACA 59.788 52.381 0.00 0.00 0.00 2.29
4675 6931 0.937304 CACCACCTGCATATACACGC 59.063 55.000 0.00 0.00 0.00 5.34
4676 6932 0.529773 ACCACCTGCATATACACGCG 60.530 55.000 3.53 3.53 0.00 6.01
4677 6933 0.529773 CCACCTGCATATACACGCGT 60.530 55.000 5.58 5.58 0.00 6.01
4678 6934 1.269361 CCACCTGCATATACACGCGTA 60.269 52.381 13.44 0.00 0.00 4.42
4679 6935 2.051423 CACCTGCATATACACGCGTAG 58.949 52.381 13.44 9.47 0.00 3.51
4715 6972 7.864379 ACTCAAACAAAATGCAACATAAGAGAG 59.136 33.333 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.452145 GCACCGTTGAGGGCTTTCAA 61.452 55.000 1.73 1.73 46.96 2.69
1 2 1.896660 GCACCGTTGAGGGCTTTCA 60.897 57.895 0.00 0.00 46.96 2.69
2 3 2.626780 GGCACCGTTGAGGGCTTTC 61.627 63.158 0.00 0.00 46.96 2.62
3 4 2.597510 GGCACCGTTGAGGGCTTT 60.598 61.111 0.00 0.00 46.96 3.51
4 5 4.660938 GGGCACCGTTGAGGGCTT 62.661 66.667 0.00 0.00 46.96 4.35
16 17 4.052518 ACCAGCATGAGGGGGCAC 62.053 66.667 0.00 0.00 39.69 5.01
17 18 4.051167 CACCAGCATGAGGGGGCA 62.051 66.667 0.00 0.00 39.69 5.36
23 1332 4.141846 ACCTATAGTTGTCACCAGCATGAG 60.142 45.833 0.00 0.00 39.69 2.90
26 1335 4.844349 AACCTATAGTTGTCACCAGCAT 57.156 40.909 0.00 0.00 37.29 3.79
30 1339 5.818678 AGTGAAACCTATAGTTGTCACCA 57.181 39.130 15.09 0.00 41.90 4.17
31 1340 5.995897 ACAAGTGAAACCTATAGTTGTCACC 59.004 40.000 15.09 0.87 41.90 4.02
36 1345 8.230486 GTCATCAACAAGTGAAACCTATAGTTG 58.770 37.037 0.00 0.00 40.50 3.16
38 1347 6.590292 CGTCATCAACAAGTGAAACCTATAGT 59.410 38.462 0.00 0.00 40.50 2.12
40 1349 6.460781 ACGTCATCAACAAGTGAAACCTATA 58.539 36.000 0.00 0.00 40.50 1.31
81 1390 4.085357 AGTGTGGCATGAAAGAACTGTA 57.915 40.909 0.00 0.00 0.00 2.74
85 1394 5.525378 CCTATCTAGTGTGGCATGAAAGAAC 59.475 44.000 0.00 0.00 0.00 3.01
113 1448 7.500227 TCACAAAACATGGAAAATTGGCATTTA 59.500 29.630 0.00 0.00 31.89 1.40
116 1451 5.374921 TCACAAAACATGGAAAATTGGCAT 58.625 33.333 0.00 0.00 0.00 4.40
121 1456 8.905660 TCATGAATCACAAAACATGGAAAATT 57.094 26.923 0.00 0.00 40.00 1.82
126 1461 8.968969 TGATTATCATGAATCACAAAACATGGA 58.031 29.630 0.00 0.00 40.18 3.41
208 1544 1.672737 CCACTCGTAGCAATGCACTGA 60.673 52.381 8.35 0.30 0.00 3.41
209 1545 0.723414 CCACTCGTAGCAATGCACTG 59.277 55.000 8.35 0.00 0.00 3.66
210 1546 1.021390 GCCACTCGTAGCAATGCACT 61.021 55.000 8.35 0.00 0.00 4.40
223 1559 0.948678 CTAGTCTAGCTCCGCCACTC 59.051 60.000 0.00 0.00 0.00 3.51
224 1560 0.466555 CCTAGTCTAGCTCCGCCACT 60.467 60.000 0.86 0.00 0.00 4.00
237 1573 1.621317 GCCCCTCTAGCATTCCTAGTC 59.379 57.143 0.00 0.00 43.36 2.59
239 1575 1.622811 CTGCCCCTCTAGCATTCCTAG 59.377 57.143 0.00 0.00 44.09 3.02
240 1576 1.220493 TCTGCCCCTCTAGCATTCCTA 59.780 52.381 0.00 0.00 40.04 2.94
241 1577 0.030705 TCTGCCCCTCTAGCATTCCT 60.031 55.000 0.00 0.00 40.04 3.36
242 1578 0.839946 TTCTGCCCCTCTAGCATTCC 59.160 55.000 0.00 0.00 40.04 3.01
243 1579 2.570135 CTTTCTGCCCCTCTAGCATTC 58.430 52.381 0.00 0.00 40.04 2.67
244 1580 1.409381 GCTTTCTGCCCCTCTAGCATT 60.409 52.381 0.00 0.00 40.04 3.56
245 1581 0.182299 GCTTTCTGCCCCTCTAGCAT 59.818 55.000 0.00 0.00 40.04 3.79
246 1582 1.604378 GCTTTCTGCCCCTCTAGCA 59.396 57.895 0.00 0.00 38.82 3.49
247 1583 1.522580 CGCTTTCTGCCCCTCTAGC 60.523 63.158 0.00 0.00 38.78 3.42
248 1584 1.144936 CCGCTTTCTGCCCCTCTAG 59.855 63.158 0.00 0.00 38.78 2.43
249 1585 1.612442 ACCGCTTTCTGCCCCTCTA 60.612 57.895 0.00 0.00 38.78 2.43
250 1586 2.930562 ACCGCTTTCTGCCCCTCT 60.931 61.111 0.00 0.00 38.78 3.69
251 1587 2.543067 ATCACCGCTTTCTGCCCCTC 62.543 60.000 0.00 0.00 38.78 4.30
252 1588 2.142292 AATCACCGCTTTCTGCCCCT 62.142 55.000 0.00 0.00 38.78 4.79
257 1596 2.938451 TCATAGCAATCACCGCTTTCTG 59.062 45.455 0.00 0.00 40.96 3.02
262 1601 2.420022 GTGTTTCATAGCAATCACCGCT 59.580 45.455 0.00 0.00 43.62 5.52
276 1615 7.490725 CACCACTTTGATTAATGTTGTGTTTCA 59.509 33.333 10.42 0.00 35.08 2.69
277 1616 7.491048 ACACCACTTTGATTAATGTTGTGTTTC 59.509 33.333 15.61 0.00 42.73 2.78
278 1617 7.327214 ACACCACTTTGATTAATGTTGTGTTT 58.673 30.769 15.61 1.33 42.73 2.83
280 1619 6.463995 ACACCACTTTGATTAATGTTGTGT 57.536 33.333 15.61 15.61 41.65 3.72
312 1651 8.737175 CACCTACCACGACATACTACATATTAT 58.263 37.037 0.00 0.00 0.00 1.28
325 1665 1.758280 AGAAACACACCTACCACGACA 59.242 47.619 0.00 0.00 0.00 4.35
326 1666 2.521105 AGAAACACACCTACCACGAC 57.479 50.000 0.00 0.00 0.00 4.34
329 1669 4.813027 TCGATTAGAAACACACCTACCAC 58.187 43.478 0.00 0.00 0.00 4.16
350 1691 3.012518 ACATAGTGATGCTTTGTGGCTC 58.987 45.455 0.00 0.00 37.85 4.70
353 1694 5.124297 TGAATGACATAGTGATGCTTTGTGG 59.876 40.000 0.00 0.00 39.04 4.17
354 1695 6.185852 TGAATGACATAGTGATGCTTTGTG 57.814 37.500 0.00 0.00 39.04 3.33
355 1696 6.432162 AGTTGAATGACATAGTGATGCTTTGT 59.568 34.615 0.00 0.00 41.08 2.83
398 1739 7.393234 TGACCATTCATTTTCCCTTAGTACTTG 59.607 37.037 0.00 0.00 0.00 3.16
501 1855 9.739276 AGACAAACATTTTCTCCAAGTATATGA 57.261 29.630 0.00 0.00 0.00 2.15
523 1879 5.633601 CACGATCACTTTTAGCACTAAGACA 59.366 40.000 0.00 0.00 0.00 3.41
529 1885 7.435068 AAAATACACGATCACTTTTAGCACT 57.565 32.000 0.00 0.00 0.00 4.40
556 1912 9.932207 AGAGCATTTTTCAATCACATGATTTTA 57.068 25.926 0.00 0.00 42.41 1.52
560 1916 7.383687 ACAAGAGCATTTTTCAATCACATGAT 58.616 30.769 0.00 0.00 36.07 2.45
562 1918 7.416154 AACAAGAGCATTTTTCAATCACATG 57.584 32.000 0.00 0.00 0.00 3.21
563 1919 7.711772 TCAAACAAGAGCATTTTTCAATCACAT 59.288 29.630 0.00 0.00 0.00 3.21
564 1920 7.040494 TCAAACAAGAGCATTTTTCAATCACA 58.960 30.769 0.00 0.00 0.00 3.58
565 1921 7.467557 TCAAACAAGAGCATTTTTCAATCAC 57.532 32.000 0.00 0.00 0.00 3.06
566 1922 8.665643 ATTCAAACAAGAGCATTTTTCAATCA 57.334 26.923 0.00 0.00 0.00 2.57
622 1980 9.015577 TCTGAAAAGCATAACACTTTTAAAACG 57.984 29.630 0.00 0.00 45.02 3.60
687 2045 5.067023 CAGGGGAAGATAAAGATCAAGTTGC 59.933 44.000 0.00 0.00 34.17 4.17
697 2055 3.944015 CTCAAGTGCAGGGGAAGATAAAG 59.056 47.826 0.00 0.00 0.00 1.85
703 2061 2.276732 TTTCTCAAGTGCAGGGGAAG 57.723 50.000 0.00 0.00 0.00 3.46
707 2065 1.321474 TGCTTTTCTCAAGTGCAGGG 58.679 50.000 0.00 0.00 0.00 4.45
709 2067 3.231965 CGAATGCTTTTCTCAAGTGCAG 58.768 45.455 0.00 0.00 37.07 4.41
743 2101 1.002773 TCTAGGGTTCCCTCGTTTTGC 59.997 52.381 14.24 0.00 37.64 3.68
749 2107 0.824759 CCTGTTCTAGGGTTCCCTCG 59.175 60.000 14.24 8.37 43.33 4.63
788 2148 6.143206 TCTCCCATTTTCCTTTTCCTTTCTT 58.857 36.000 0.00 0.00 0.00 2.52
795 2155 4.082125 TCTGCTCTCCCATTTTCCTTTTC 58.918 43.478 0.00 0.00 0.00 2.29
870 2243 4.309099 GGATTAATAACGCATACCGACCA 58.691 43.478 0.00 0.00 41.02 4.02
878 2251 4.389374 CAGTCTGGGGATTAATAACGCAT 58.611 43.478 9.01 0.00 0.00 4.73
899 2273 2.046988 CAGTGCTCCATGTCGCCA 60.047 61.111 0.00 0.00 0.00 5.69
907 2285 0.911769 ATTCCGATTCCAGTGCTCCA 59.088 50.000 0.00 0.00 0.00 3.86
1120 2506 2.112297 AAGAAACAAGGGCGCGGA 59.888 55.556 8.83 0.00 0.00 5.54
1155 2541 0.673644 GCGCTGGAGGCTTCAGTTAA 60.674 55.000 23.46 0.00 39.13 2.01
1157 2543 2.359230 GCGCTGGAGGCTTCAGTT 60.359 61.111 23.46 0.00 39.13 3.16
1159 2545 4.749310 ACGCGCTGGAGGCTTCAG 62.749 66.667 18.93 18.93 39.13 3.02
1160 2546 4.742201 GACGCGCTGGAGGCTTCA 62.742 66.667 5.73 0.00 39.13 3.02
1164 2550 4.874977 GTAGGACGCGCTGGAGGC 62.875 72.222 5.73 0.00 37.64 4.70
1167 2553 1.677966 AAGAGTAGGACGCGCTGGA 60.678 57.895 5.73 0.00 0.00 3.86
1169 2555 0.388649 AACAAGAGTAGGACGCGCTG 60.389 55.000 5.73 1.02 0.00 5.18
1170 2556 0.109226 GAACAAGAGTAGGACGCGCT 60.109 55.000 5.73 0.00 0.00 5.92
1171 2557 0.109226 AGAACAAGAGTAGGACGCGC 60.109 55.000 5.73 0.00 0.00 6.86
1172 2558 2.095161 AGAAGAACAAGAGTAGGACGCG 60.095 50.000 3.53 3.53 0.00 6.01
1173 2559 3.246619 CAGAAGAACAAGAGTAGGACGC 58.753 50.000 0.00 0.00 0.00 5.19
1174 2560 3.246619 GCAGAAGAACAAGAGTAGGACG 58.753 50.000 0.00 0.00 0.00 4.79
1175 2561 3.591023 GGCAGAAGAACAAGAGTAGGAC 58.409 50.000 0.00 0.00 0.00 3.85
1195 2581 1.472878 TCCTCTTCGAGACAATCACGG 59.527 52.381 0.00 0.00 31.48 4.94
1207 2593 4.612712 GCATCTAGATCGAACTCCTCTTCG 60.613 50.000 1.03 0.00 43.65 3.79
1210 2596 2.811431 CGCATCTAGATCGAACTCCTCT 59.189 50.000 15.28 0.00 0.00 3.69
1214 2600 3.610786 TCACGCATCTAGATCGAACTC 57.389 47.619 22.79 0.00 0.00 3.01
1242 2628 5.240623 ACGAGCTAAGAGGATATCAGTCAAG 59.759 44.000 4.83 4.24 0.00 3.02
1254 2640 1.614413 GGATGGGTACGAGCTAAGAGG 59.386 57.143 0.00 0.00 0.00 3.69
1260 2646 0.394762 TACACGGATGGGTACGAGCT 60.395 55.000 0.00 0.00 35.06 4.09
1322 2711 3.202097 TGCTGTGACTCGTCAAAAATGA 58.798 40.909 0.64 0.00 41.85 2.57
1327 2725 1.852942 GACTGCTGTGACTCGTCAAA 58.147 50.000 0.00 0.00 41.85 2.69
1350 2748 6.092259 CAGGTCGGTTCTTCAAACCTAATTAG 59.908 42.308 5.43 5.43 38.27 1.73
1356 2754 1.202770 CCAGGTCGGTTCTTCAAACCT 60.203 52.381 5.49 0.00 40.97 3.50
1379 2813 9.639601 CATAAAGATAGGCATATAAGTTCGACA 57.360 33.333 0.00 0.00 0.00 4.35
1382 2816 7.495934 CCCCATAAAGATAGGCATATAAGTTCG 59.504 40.741 0.00 0.00 0.00 3.95
1394 2828 4.728772 TGACATTGCCCCATAAAGATAGG 58.271 43.478 0.00 0.00 0.00 2.57
1419 2853 4.082787 ACACAACTTGTTTCAACCAGTCTG 60.083 41.667 0.00 0.00 34.22 3.51
1421 2855 4.434713 ACACAACTTGTTTCAACCAGTC 57.565 40.909 0.00 0.00 34.22 3.51
1434 2868 6.696411 TCTCAAAATTGTTCCAACACAACTT 58.304 32.000 0.00 0.00 39.48 2.66
1491 2925 9.646427 GCAGATGTTTTTACATTTTATAACCCA 57.354 29.630 0.00 0.00 0.00 4.51
1492 2926 9.869757 AGCAGATGTTTTTACATTTTATAACCC 57.130 29.630 0.00 0.00 0.00 4.11
1537 3015 3.181508 TGTGCGACAAATGCAGTCATATG 60.182 43.478 5.54 0.00 44.21 1.78
1597 3075 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
1598 3076 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
1599 3077 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
1600 3078 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
1601 3079 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
1602 3080 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1603 3081 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
1605 3083 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1606 3084 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
1607 3085 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
1608 3086 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
1609 3087 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
1610 3088 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
1611 3089 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
1612 3090 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
1613 3091 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
1614 3092 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
1615 3093 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
1629 3107 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
1630 3108 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
1631 3109 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
1632 3110 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
1635 3113 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
1639 3117 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
1640 3118 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
1641 3119 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
1642 3120 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
1643 3121 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
1644 3122 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
1645 3123 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
1646 3124 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
1647 3125 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
1648 3126 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
1661 3139 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
1662 3140 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
1663 3141 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
1664 3142 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
1665 3143 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
1666 3144 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1667 3145 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
1678 3156 9.746711 CGTTCTGAATTACTTGTCTTAGATTTG 57.253 33.333 0.00 0.00 0.00 2.32
1679 3157 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
1680 3158 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
1681 3159 7.837863 TCCGTTCTGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
1682 3160 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
1683 3161 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
1684 3162 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
1685 3163 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
1686 3164 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1687 3165 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1688 3166 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1689 3167 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1690 3168 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1691 3169 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1692 3170 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1693 3171 4.607239 ACTACTCCCTCCGTTCTGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
1694 3172 3.442076 ACTACTCCCTCCGTTCTGAATT 58.558 45.455 0.00 0.00 0.00 2.17
1695 3173 3.103080 ACTACTCCCTCCGTTCTGAAT 57.897 47.619 0.00 0.00 0.00 2.57
1696 3174 2.599408 ACTACTCCCTCCGTTCTGAA 57.401 50.000 0.00 0.00 0.00 3.02
1697 3175 3.552875 CATACTACTCCCTCCGTTCTGA 58.447 50.000 0.00 0.00 0.00 3.27
1698 3176 2.623889 CCATACTACTCCCTCCGTTCTG 59.376 54.545 0.00 0.00 0.00 3.02
1699 3177 2.512896 TCCATACTACTCCCTCCGTTCT 59.487 50.000 0.00 0.00 0.00 3.01
1700 3178 2.885894 CTCCATACTACTCCCTCCGTTC 59.114 54.545 0.00 0.00 0.00 3.95
1701 3179 2.946785 CTCCATACTACTCCCTCCGTT 58.053 52.381 0.00 0.00 0.00 4.44
1702 3180 1.479021 GCTCCATACTACTCCCTCCGT 60.479 57.143 0.00 0.00 0.00 4.69
1703 3181 1.249407 GCTCCATACTACTCCCTCCG 58.751 60.000 0.00 0.00 0.00 4.63
1704 3182 1.133136 TGGCTCCATACTACTCCCTCC 60.133 57.143 0.00 0.00 0.00 4.30
1705 3183 1.964933 GTGGCTCCATACTACTCCCTC 59.035 57.143 0.00 0.00 0.00 4.30
1706 3184 1.576272 AGTGGCTCCATACTACTCCCT 59.424 52.381 0.00 0.00 0.00 4.20
1707 3185 1.689273 CAGTGGCTCCATACTACTCCC 59.311 57.143 0.00 0.00 0.00 4.30
1708 3186 1.689273 CCAGTGGCTCCATACTACTCC 59.311 57.143 0.00 0.00 0.00 3.85
1709 3187 2.362717 GTCCAGTGGCTCCATACTACTC 59.637 54.545 3.51 0.00 0.00 2.59
1710 3188 2.292257 TGTCCAGTGGCTCCATACTACT 60.292 50.000 3.51 0.00 0.00 2.57
1711 3189 2.108168 TGTCCAGTGGCTCCATACTAC 58.892 52.381 3.51 0.00 0.00 2.73
1712 3190 2.543037 TGTCCAGTGGCTCCATACTA 57.457 50.000 3.51 0.00 0.00 1.82
1713 3191 1.556911 CTTGTCCAGTGGCTCCATACT 59.443 52.381 3.51 0.00 0.00 2.12
1726 3204 4.771127 GACGCTTCCACTTGTCCA 57.229 55.556 0.00 0.00 0.00 4.02
1747 3225 1.476110 GGTATTTATGTGCAGGGCGGA 60.476 52.381 0.00 0.00 0.00 5.54
1749 3227 1.674359 TGGTATTTATGTGCAGGGCG 58.326 50.000 0.00 0.00 0.00 6.13
1756 3235 9.528018 GTTTGATATTGGGTTGGTATTTATGTG 57.472 33.333 0.00 0.00 0.00 3.21
1799 3278 3.119096 GTCCAGGAGCGGCGAAAC 61.119 66.667 12.98 0.00 0.00 2.78
1806 3285 2.584418 CAGATGCGTCCAGGAGCG 60.584 66.667 1.23 0.00 35.87 5.03
1819 3298 1.306642 ACTCGTCGTCGGAAGCAGAT 61.307 55.000 1.55 0.00 37.69 2.90
1825 3304 0.884259 TACCACACTCGTCGTCGGAA 60.884 55.000 1.55 0.00 37.69 4.30
1917 3403 4.125703 GGCAGAAGAACATGAGTAGGATG 58.874 47.826 0.00 0.00 0.00 3.51
1940 3426 6.119240 TGAACTCCTCTTCAAGACAATCAT 57.881 37.500 0.00 0.00 0.00 2.45
1963 3449 3.482156 AAGGCATCACGCATCTAGATT 57.518 42.857 1.33 0.00 45.17 2.40
1981 3467 7.432350 AGCAAGAGAATAACAGTCAAGAAAG 57.568 36.000 0.00 0.00 0.00 2.62
1984 3470 5.164233 CGAGCAAGAGAATAACAGTCAAGA 58.836 41.667 0.00 0.00 0.00 3.02
1985 3471 4.926238 ACGAGCAAGAGAATAACAGTCAAG 59.074 41.667 0.00 0.00 0.00 3.02
2045 3531 4.346129 GCATGCTTGCTACAGTAATTGAC 58.654 43.478 16.80 0.00 45.77 3.18
2072 3558 2.332063 ACACACCAGGTCTGTTCAAG 57.668 50.000 0.00 0.00 0.00 3.02
2108 3654 5.297527 GTTTACGGGTATTGTCCCATAAAGG 59.702 44.000 3.74 0.00 43.07 3.11
2128 3678 7.201785 CCAAGAAAGCTAGTTTCAACCAGTTTA 60.202 37.037 15.53 0.00 46.29 2.01
2148 3698 9.664332 TCAAATTTCTCAAAATTGTTCCAAGAA 57.336 25.926 0.00 0.00 42.82 2.52
2150 3700 8.553696 CCTCAAATTTCTCAAAATTGTTCCAAG 58.446 33.333 0.00 0.00 42.82 3.61
2187 3881 2.230025 AGATATCAAGACCGATGGCTCG 59.770 50.000 5.32 0.28 44.62 5.03
2196 3890 6.513180 TCATAACGACCAAGATATCAAGACC 58.487 40.000 5.32 0.00 0.00 3.85
2237 3934 7.962995 ATTATCAGAGAGAGTTGTGAAGGTA 57.037 36.000 0.00 0.00 0.00 3.08
2262 3959 7.977818 TCAGTTGCCATCACTCCTATTATTAT 58.022 34.615 0.00 0.00 0.00 1.28
2271 3968 1.457346 CCTTCAGTTGCCATCACTCC 58.543 55.000 0.00 0.00 0.00 3.85
2278 3975 2.969821 ATTGTACCCTTCAGTTGCCA 57.030 45.000 0.00 0.00 0.00 4.92
2280 3977 5.453567 AGAAAATTGTACCCTTCAGTTGC 57.546 39.130 0.00 0.00 0.00 4.17
2345 4042 4.716784 AGATTGTCTACATTGCCTCCTGTA 59.283 41.667 0.00 0.00 0.00 2.74
2389 4086 8.648698 TTCCATTCAATGAAGATTTTCTACCA 57.351 30.769 0.00 0.00 34.31 3.25
2458 4155 3.691575 TCCTCAAAACTGTTCCAACACA 58.308 40.909 0.00 0.00 34.70 3.72
2463 4160 5.068987 CCTCAAATTCCTCAAAACTGTTCCA 59.931 40.000 0.00 0.00 0.00 3.53
2468 4165 4.584325 TCCACCTCAAATTCCTCAAAACTG 59.416 41.667 0.00 0.00 0.00 3.16
2606 4701 3.753272 GTGCGACAAATGGAGGCATATAT 59.247 43.478 0.00 0.00 35.88 0.86
2616 4711 3.687212 TGGTACTAATGTGCGACAAATGG 59.313 43.478 0.00 0.00 0.00 3.16
2627 4722 4.917385 TGGCATTGACTTGGTACTAATGT 58.083 39.130 0.00 0.00 32.75 2.71
2631 4726 4.634012 ACTTGGCATTGACTTGGTACTA 57.366 40.909 0.00 0.00 0.00 1.82
2644 4739 6.377996 TGACTCAATGCTAATAAACTTGGCAT 59.622 34.615 3.34 3.34 44.09 4.40
2645 4740 5.709631 TGACTCAATGCTAATAAACTTGGCA 59.290 36.000 0.00 0.00 37.32 4.92
2656 4751 5.906073 TCAAGATCGATGACTCAATGCTAA 58.094 37.500 0.54 0.00 0.00 3.09
2667 4762 5.233225 GCACCAAGATATCAAGATCGATGA 58.767 41.667 0.54 6.70 0.00 2.92
2673 4768 6.524734 TCATAACGCACCAAGATATCAAGAT 58.475 36.000 5.32 0.00 0.00 2.40
2691 4788 5.129485 TGAATCAGAAGGGACTCCTCATAAC 59.871 44.000 0.00 0.00 44.07 1.89
2707 4804 5.752036 AAGAGTCATCAAGGTGAATCAGA 57.248 39.130 12.58 0.00 43.56 3.27
2708 4805 6.092396 CAGAAAGAGTCATCAAGGTGAATCAG 59.908 42.308 12.58 0.00 43.56 2.90
2739 4836 9.727859 ATCACTGATCACTCGTACTATTATAGT 57.272 33.333 9.96 9.96 42.68 2.12
2740 4837 9.980780 CATCACTGATCACTCGTACTATTATAG 57.019 37.037 0.00 0.00 0.00 1.31
2743 4840 6.294010 GGCATCACTGATCACTCGTACTATTA 60.294 42.308 0.00 0.00 0.00 0.98
2744 4841 5.508153 GGCATCACTGATCACTCGTACTATT 60.508 44.000 0.00 0.00 0.00 1.73
2746 4843 3.315470 GGCATCACTGATCACTCGTACTA 59.685 47.826 0.00 0.00 0.00 1.82
2747 4844 2.099921 GGCATCACTGATCACTCGTACT 59.900 50.000 0.00 0.00 0.00 2.73
2748 4845 2.159240 TGGCATCACTGATCACTCGTAC 60.159 50.000 0.00 0.00 0.00 3.67
2749 4846 2.099405 TGGCATCACTGATCACTCGTA 58.901 47.619 0.00 0.00 0.00 3.43
2750 4847 0.897621 TGGCATCACTGATCACTCGT 59.102 50.000 0.00 0.00 0.00 4.18
2751 4848 1.662629 GTTGGCATCACTGATCACTCG 59.337 52.381 0.00 0.00 0.00 4.18
2752 4849 2.676839 CAGTTGGCATCACTGATCACTC 59.323 50.000 12.91 0.00 33.65 3.51
2753 4850 2.303890 TCAGTTGGCATCACTGATCACT 59.696 45.455 16.10 0.00 35.81 3.41
2754 4851 2.703416 TCAGTTGGCATCACTGATCAC 58.297 47.619 16.10 0.00 35.81 3.06
2755 4852 3.340928 CTTCAGTTGGCATCACTGATCA 58.659 45.455 19.63 7.87 39.81 2.92
2756 4853 2.681848 CCTTCAGTTGGCATCACTGATC 59.318 50.000 19.63 0.00 39.81 2.92
2759 4856 1.171308 CCCTTCAGTTGGCATCACTG 58.829 55.000 12.16 12.16 0.00 3.66
2803 4900 6.852404 AGGAAAGGGCTCATATTTAAGCATA 58.148 36.000 0.00 0.00 40.36 3.14
2815 4912 3.648067 CCTGTCATATAGGAAAGGGCTCA 59.352 47.826 14.84 0.00 38.45 4.26
2828 4925 4.655649 TGTCTACATTGCCTCCTGTCATAT 59.344 41.667 0.00 0.00 0.00 1.78
2857 4961 5.813513 AGCACTCCTTTTTCCAATCAATT 57.186 34.783 0.00 0.00 0.00 2.32
2918 5022 9.035607 CAAATACTGATTAGAAAGCTATGACGT 57.964 33.333 0.00 0.00 0.00 4.34
2920 5024 9.331282 ACCAAATACTGATTAGAAAGCTATGAC 57.669 33.333 0.00 0.00 0.00 3.06
2929 5033 8.134202 TCTCTGTGACCAAATACTGATTAGAA 57.866 34.615 0.00 0.00 0.00 2.10
2939 5043 8.375493 AGTTTAGGTATCTCTGTGACCAAATA 57.625 34.615 0.00 0.00 35.56 1.40
2942 5046 6.380274 CCTAGTTTAGGTATCTCTGTGACCAA 59.620 42.308 0.00 0.00 41.18 3.67
2964 5068 4.015872 ACTCGCAAAGAAATGGAACCTA 57.984 40.909 0.00 0.00 0.00 3.08
3001 5105 8.993121 TGTCAATGCTTTAAGAAACAAAAACAA 58.007 25.926 0.00 0.00 0.00 2.83
3009 5113 4.537015 AGCGTGTCAATGCTTTAAGAAAC 58.463 39.130 0.00 0.00 46.90 2.78
3019 5123 4.083581 ACATCTTAAAGCGTGTCAATGC 57.916 40.909 0.00 0.00 38.72 3.56
3020 5124 5.688823 TGAACATCTTAAAGCGTGTCAATG 58.311 37.500 0.00 0.00 0.00 2.82
3022 5126 5.940192 ATGAACATCTTAAAGCGTGTCAA 57.060 34.783 0.00 0.00 0.00 3.18
3023 5127 5.940192 AATGAACATCTTAAAGCGTGTCA 57.060 34.783 0.00 0.00 0.00 3.58
3025 5129 8.039603 TCATTAATGAACATCTTAAAGCGTGT 57.960 30.769 15.82 0.00 33.08 4.49
3065 5186 9.654663 GGTACAAGGGAGTTAATAGCATATAAG 57.345 37.037 0.00 0.00 0.00 1.73
3087 5208 3.026694 AGTCACTACCATAACCCGGTAC 58.973 50.000 0.00 0.00 37.99 3.34
3090 5211 2.901249 CAAGTCACTACCATAACCCGG 58.099 52.381 0.00 0.00 0.00 5.73
3093 5214 3.127030 GCAAGCAAGTCACTACCATAACC 59.873 47.826 0.00 0.00 0.00 2.85
3100 5226 5.411781 ACTATAGTGCAAGCAAGTCACTAC 58.588 41.667 4.10 0.00 43.47 2.73
3207 5382 9.284594 GCACATGTATGTTTGATTTTAATACGT 57.715 29.630 0.00 0.00 39.39 3.57
3209 5384 9.579768 TGGCACATGTATGTTTGATTTTAATAC 57.420 29.630 0.00 0.00 39.39 1.89
3242 5417 9.480053 CTCAAATAAACCTCATGTTTTGAATGT 57.520 29.630 0.00 0.00 44.80 2.71
3243 5418 9.480053 ACTCAAATAAACCTCATGTTTTGAATG 57.520 29.630 0.00 0.00 44.80 2.67
3276 5454 9.778741 ATCTGTAATTGTACCATCGACATTATT 57.221 29.630 0.00 0.00 0.00 1.40
3277 5455 9.208022 CATCTGTAATTGTACCATCGACATTAT 57.792 33.333 0.00 0.00 0.00 1.28
3278 5456 7.170828 GCATCTGTAATTGTACCATCGACATTA 59.829 37.037 0.00 0.00 0.00 1.90
3284 5462 3.184379 CCGCATCTGTAATTGTACCATCG 59.816 47.826 0.00 0.00 0.00 3.84
3289 5467 4.377021 TCCATCCGCATCTGTAATTGTAC 58.623 43.478 0.00 0.00 0.00 2.90
3401 5582 3.963428 AAAGATCTGTAACTCGCCTGT 57.037 42.857 0.00 0.00 0.00 4.00
3412 5593 1.131126 CATTGCGGCGAAAAGATCTGT 59.869 47.619 12.98 0.00 0.00 3.41
3436 5617 9.569167 TCAAGTTACATTTACTGATCTAACGAG 57.431 33.333 0.00 0.00 0.00 4.18
3450 5639 6.337356 CCAAGTGGTTGTTCAAGTTACATTT 58.663 36.000 0.00 0.00 30.95 2.32
3451 5640 5.681179 GCCAAGTGGTTGTTCAAGTTACATT 60.681 40.000 0.00 0.00 37.57 2.71
3455 5644 3.626930 AGCCAAGTGGTTGTTCAAGTTA 58.373 40.909 0.00 0.00 37.57 2.24
3468 5657 0.250467 ACCACTGTGCTAGCCAAGTG 60.250 55.000 27.81 27.81 0.00 3.16
3475 5664 2.987149 CGAGTTTACACCACTGTGCTAG 59.013 50.000 1.29 0.00 46.86 3.42
3480 5669 5.603596 TCAAATACGAGTTTACACCACTGT 58.396 37.500 0.00 0.00 0.00 3.55
3493 5702 4.944962 TGCCTGTTCATTCAAATACGAG 57.055 40.909 0.00 0.00 0.00 4.18
3514 5723 7.147461 GGTCCCAAGTATATCTTCTCCTCTTTT 60.147 40.741 0.00 0.00 33.63 2.27
3533 5742 3.727258 CGCCCCATGAGGTCCCAA 61.727 66.667 0.00 0.00 0.00 4.12
3595 5804 4.040376 GCTTGTTTCTGAAACTCTGCTTG 58.960 43.478 27.75 13.89 41.90 4.01
3625 5834 2.856222 CCACTGGATTTCCTATCTGCC 58.144 52.381 0.00 0.00 36.82 4.85
3697 5906 3.117888 CCATGCCCCTACTATCTGTTGTT 60.118 47.826 0.00 0.00 0.00 2.83
3766 5975 3.071479 GCGTGGTTTCCTATCAAACTCA 58.929 45.455 0.00 0.00 36.62 3.41
3784 5993 3.082579 GCAGCCACCTAGCTAGCGT 62.083 63.158 15.74 11.64 42.61 5.07
3812 6021 0.863957 AACTTTTGCGCAAACGGACG 60.864 50.000 33.76 22.13 40.33 4.79
3830 6039 4.698304 GCCCACAGCAGTATACAGTTAAAA 59.302 41.667 5.50 0.00 42.97 1.52
3868 6077 7.928908 TGCAGATAACAAAGACATGTTTTTC 57.071 32.000 11.19 1.06 40.52 2.29
3903 6112 7.885399 ACCATAGAATACCATTGGCTATTTCTC 59.115 37.037 1.54 0.00 0.00 2.87
3937 6146 6.711194 CCACATTCTAGCAAGATTCATGAGAT 59.289 38.462 0.00 0.00 0.00 2.75
3959 6168 7.431084 CAGACATACAACAAACAACTAAACCAC 59.569 37.037 0.00 0.00 0.00 4.16
3960 6169 7.337184 TCAGACATACAACAAACAACTAAACCA 59.663 33.333 0.00 0.00 0.00 3.67
3961 6170 7.642586 GTCAGACATACAACAAACAACTAAACC 59.357 37.037 0.00 0.00 0.00 3.27
3962 6171 8.395633 AGTCAGACATACAACAAACAACTAAAC 58.604 33.333 2.66 0.00 0.00 2.01
3963 6172 8.500753 AGTCAGACATACAACAAACAACTAAA 57.499 30.769 2.66 0.00 0.00 1.85
3964 6173 8.394877 CAAGTCAGACATACAACAAACAACTAA 58.605 33.333 2.66 0.00 0.00 2.24
3965 6174 7.766738 TCAAGTCAGACATACAACAAACAACTA 59.233 33.333 2.66 0.00 0.00 2.24
3966 6175 6.597672 TCAAGTCAGACATACAACAAACAACT 59.402 34.615 2.66 0.00 0.00 3.16
3967 6176 6.781138 TCAAGTCAGACATACAACAAACAAC 58.219 36.000 2.66 0.00 0.00 3.32
3968 6177 6.821160 TCTCAAGTCAGACATACAACAAACAA 59.179 34.615 2.66 0.00 0.00 2.83
3969 6178 6.345298 TCTCAAGTCAGACATACAACAAACA 58.655 36.000 2.66 0.00 0.00 2.83
3970 6179 6.844696 TCTCAAGTCAGACATACAACAAAC 57.155 37.500 2.66 0.00 0.00 2.93
3971 6180 7.216494 TCATCTCAAGTCAGACATACAACAAA 58.784 34.615 2.66 0.00 0.00 2.83
3972 6181 6.758254 TCATCTCAAGTCAGACATACAACAA 58.242 36.000 2.66 0.00 0.00 2.83
3973 6182 6.345096 TCATCTCAAGTCAGACATACAACA 57.655 37.500 2.66 0.00 0.00 3.33
3974 6183 7.763528 AGATTCATCTCAAGTCAGACATACAAC 59.236 37.037 2.66 0.00 29.30 3.32
3975 6184 7.763071 CAGATTCATCTCAAGTCAGACATACAA 59.237 37.037 2.66 0.00 34.22 2.41
3976 6185 7.093596 ACAGATTCATCTCAAGTCAGACATACA 60.094 37.037 2.66 0.00 34.22 2.29
4008 6217 2.549926 TCTACACATAAGCACATGCCG 58.450 47.619 0.00 0.00 43.38 5.69
4034 6255 4.344679 ACATCAAATTTCAACAAGGAGGCA 59.655 37.500 0.00 0.00 0.00 4.75
4035 6256 4.886579 ACATCAAATTTCAACAAGGAGGC 58.113 39.130 0.00 0.00 0.00 4.70
4037 6258 8.928733 CCATTAACATCAAATTTCAACAAGGAG 58.071 33.333 0.00 0.00 0.00 3.69
4038 6259 8.428063 ACCATTAACATCAAATTTCAACAAGGA 58.572 29.630 0.00 0.00 0.00 3.36
4042 6263 7.810282 CGGTACCATTAACATCAAATTTCAACA 59.190 33.333 13.54 0.00 0.00 3.33
4054 6275 1.207570 TGGCGTCGGTACCATTAACAT 59.792 47.619 13.54 0.00 0.00 2.71
4055 6276 0.607112 TGGCGTCGGTACCATTAACA 59.393 50.000 13.54 1.98 0.00 2.41
4070 6291 7.115378 GCAATTGAGGAAAAATATAGAATGGCG 59.885 37.037 10.34 0.00 0.00 5.69
4089 6310 2.378445 TCGGTCGATCAAGCAATTGA 57.622 45.000 10.34 0.00 35.15 2.57
4105 6333 4.776743 CACTTTCAACAGTTCAAGATCGG 58.223 43.478 8.28 0.00 0.00 4.18
4120 6348 6.691754 TTGTTAAGATTGTGAGCACTTTCA 57.308 33.333 1.99 0.00 0.00 2.69
4128 6356 5.762045 CCCTGTGTTTGTTAAGATTGTGAG 58.238 41.667 0.00 0.00 0.00 3.51
4135 6363 3.314080 CGAAAGCCCTGTGTTTGTTAAGA 59.686 43.478 0.00 0.00 0.00 2.10
4158 6386 4.157289 ACTGCATTTGGTTCTGCATAGAAG 59.843 41.667 0.00 0.00 46.48 2.85
4159 6387 4.081406 ACTGCATTTGGTTCTGCATAGAA 58.919 39.130 0.00 0.00 46.48 2.10
4169 6399 2.029649 GCACTCATGACTGCATTTGGTT 60.030 45.455 18.91 0.00 33.31 3.67
4174 6404 2.357075 CTCTGCACTCATGACTGCATT 58.643 47.619 24.40 0.00 42.43 3.56
4187 6417 4.687215 TCACCGGCTGCTCTGCAC 62.687 66.667 0.00 0.00 33.79 4.57
4236 6470 5.878116 AGATTGCTGTAAAGCCGTATGTAAA 59.122 36.000 1.45 0.00 0.00 2.01
4245 6483 7.118971 CCATTCTATAGAGATTGCTGTAAAGCC 59.881 40.741 1.45 0.00 33.51 4.35
4255 6493 7.930325 TGACTTGCTTCCATTCTATAGAGATTG 59.070 37.037 2.02 2.88 34.28 2.67
4292 6533 0.568192 CTATCCTCCTCCCCCTTCCA 59.432 60.000 0.00 0.00 0.00 3.53
4301 6542 1.238625 CCGGTCGAGCTATCCTCCTC 61.239 65.000 13.48 0.00 37.27 3.71
4411 6652 3.521529 GATGACGCCGCTGCCCTAT 62.522 63.158 0.00 0.00 0.00 2.57
4481 6722 6.294899 GGTGTGGATAAAATGGATGATGATGG 60.295 42.308 0.00 0.00 0.00 3.51
4508 6749 2.957402 ATGTGTGGTCTGTGGTCAAT 57.043 45.000 0.00 0.00 0.00 2.57
4512 6753 3.173151 TCATCTATGTGTGGTCTGTGGT 58.827 45.455 0.00 0.00 0.00 4.16
4514 6755 4.825422 AGTTCATCTATGTGTGGTCTGTG 58.175 43.478 0.00 0.00 0.00 3.66
4516 6757 5.077134 TGAGTTCATCTATGTGTGGTCTG 57.923 43.478 0.00 0.00 0.00 3.51
4517 6758 5.946942 ATGAGTTCATCTATGTGTGGTCT 57.053 39.130 0.00 0.00 28.78 3.85
4540 6790 5.339282 CCCATCAGCTCTCATGATCCATATT 60.339 44.000 0.00 0.00 35.20 1.28
4545 6795 1.698532 ACCCATCAGCTCTCATGATCC 59.301 52.381 0.00 0.00 35.20 3.36
4549 6799 0.107361 TGCACCCATCAGCTCTCATG 60.107 55.000 0.00 0.00 0.00 3.07
4585 6841 0.679505 TCACCAGAGAACAGGAACCG 59.320 55.000 0.00 0.00 0.00 4.44
4650 6906 0.034186 ATATGCAGGTGGTGGTGGTG 60.034 55.000 0.00 0.00 0.00 4.17
4651 6907 1.211949 GTATATGCAGGTGGTGGTGGT 59.788 52.381 0.00 0.00 0.00 4.16
4652 6908 1.211703 TGTATATGCAGGTGGTGGTGG 59.788 52.381 0.00 0.00 0.00 4.61
4675 6931 4.603985 TGTTTGAGTCCATATACGCTACG 58.396 43.478 0.00 0.00 0.00 3.51
4676 6932 6.897259 TTTGTTTGAGTCCATATACGCTAC 57.103 37.500 0.00 0.00 0.00 3.58
4677 6933 7.466725 GCATTTTGTTTGAGTCCATATACGCTA 60.467 37.037 0.00 0.00 0.00 4.26
4678 6934 6.677920 GCATTTTGTTTGAGTCCATATACGCT 60.678 38.462 0.00 0.00 0.00 5.07
4679 6935 5.455525 GCATTTTGTTTGAGTCCATATACGC 59.544 40.000 0.00 0.00 0.00 4.42
4680 6936 6.550843 TGCATTTTGTTTGAGTCCATATACG 58.449 36.000 0.00 0.00 0.00 3.06
4681 6937 7.812191 TGTTGCATTTTGTTTGAGTCCATATAC 59.188 33.333 0.00 0.00 0.00 1.47
4682 6938 7.890515 TGTTGCATTTTGTTTGAGTCCATATA 58.109 30.769 0.00 0.00 0.00 0.86
4715 6972 1.486726 ACCCACGATTCCTCCTCAATC 59.513 52.381 0.00 0.00 0.00 2.67
4748 7005 1.760268 GCAAGCGCTCCAGAATCTCG 61.760 60.000 12.06 0.00 34.30 4.04



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.