Multiple sequence alignment - TraesCS5A01G466300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G466300 chr5A 100.000 3300 0 0 1 3300 644858123 644861422 0 6095
1 TraesCS5A01G466300 chr5B 91.717 3296 119 63 60 3300 650029390 650032586 0 4433
2 TraesCS5A01G466300 chr5D 93.731 2584 70 42 735 3300 517446097 517448606 0 3790
3 TraesCS5A01G466300 chr5D 90.374 696 40 7 1 677 517445040 517445727 0 889


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G466300 chr5A 644858123 644861422 3299 False 6095.0 6095 100.0000 1 3300 1 chr5A.!!$F1 3299
1 TraesCS5A01G466300 chr5B 650029390 650032586 3196 False 4433.0 4433 91.7170 60 3300 1 chr5B.!!$F1 3240
2 TraesCS5A01G466300 chr5D 517445040 517448606 3566 False 2339.5 3790 92.0525 1 3300 2 chr5D.!!$F1 3299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.537188 CGGCCTGTCCTTCAGTATGT 59.463 55.000 0.00 0.0 42.19 2.29 F
830 1184 1.008680 TTCCCCCATCCCATCCCAT 59.991 57.895 0.00 0.0 0.00 4.00 F
1427 1802 1.089920 CTACTGTGGATTGCAGTGGC 58.910 55.000 8.05 0.0 45.59 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1812 0.683973 CAGCTAGCTACTCATGGGGG 59.316 60.0 18.86 0.00 0.00 5.40 R
2272 2655 0.521867 CCGCTTGCATGTTCATGTCG 60.522 55.0 13.24 11.16 0.00 4.35 R
2366 2759 0.888619 CCATGGCATGCATGAGATCC 59.111 55.0 30.64 20.72 32.09 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.537188 CGGCCTGTCCTTCAGTATGT 59.463 55.000 0.00 0.00 42.19 2.29
26 27 4.641396 CCTGTCCTTCAGTATGTTTGACA 58.359 43.478 0.00 0.00 42.19 3.58
30 31 5.070446 TGTCCTTCAGTATGTTTGACACTCT 59.930 40.000 0.00 0.00 34.63 3.24
37 38 1.953559 TGTTTGACACTCTGCCACTC 58.046 50.000 0.00 0.00 0.00 3.51
69 77 2.649312 AGTTGATCCCTCCATTGGTCAA 59.351 45.455 1.86 2.21 0.00 3.18
282 299 1.281656 GGTCACGCAAGGAAAACCG 59.718 57.895 0.00 0.00 46.39 4.44
345 362 3.064931 CCTACTCGGGTTTCACTTTCAC 58.935 50.000 0.00 0.00 0.00 3.18
355 372 1.654220 CACTTTCACCCAAGTGGCG 59.346 57.895 5.78 0.00 46.84 5.69
417 434 2.655073 GGCAAAACATTCCCCCGGG 61.655 63.158 15.80 15.80 0.00 5.73
423 440 4.440829 CATTCCCCCGGGGTGTGG 62.441 72.222 37.66 22.66 44.74 4.17
494 521 4.201679 CGCCACGGCCGTATCTCA 62.202 66.667 33.70 0.00 37.98 3.27
495 522 2.585247 GCCACGGCCGTATCTCAC 60.585 66.667 33.70 12.89 34.56 3.51
542 569 4.498520 ACCATCGCAGCCGTCGAG 62.499 66.667 0.00 0.00 39.47 4.04
630 668 2.105930 CTAGCTCACAGGGCTCGC 59.894 66.667 0.00 0.00 40.74 5.03
688 726 4.394712 CCCACCCGCCACTCACTC 62.395 72.222 0.00 0.00 0.00 3.51
689 727 4.742201 CCACCCGCCACTCACTCG 62.742 72.222 0.00 0.00 0.00 4.18
699 737 2.336478 ACTCACTCGCCTCACCTCG 61.336 63.158 0.00 0.00 0.00 4.63
701 739 4.803426 CACTCGCCTCACCTCGCC 62.803 72.222 0.00 0.00 0.00 5.54
752 1102 5.163405 CCCTCTCTCTCTCTATCTCTATCCG 60.163 52.000 0.00 0.00 0.00 4.18
772 1126 2.729479 CCACATGCGCTCTCCCTCT 61.729 63.158 9.73 0.00 0.00 3.69
773 1127 1.227205 CACATGCGCTCTCCCTCTC 60.227 63.158 9.73 0.00 0.00 3.20
774 1128 1.381056 ACATGCGCTCTCCCTCTCT 60.381 57.895 9.73 0.00 0.00 3.10
775 1129 1.363443 CATGCGCTCTCCCTCTCTC 59.637 63.158 9.73 0.00 0.00 3.20
816 1170 2.754658 TCGCCTCTCCTCGTTCCC 60.755 66.667 0.00 0.00 0.00 3.97
817 1171 3.839432 CGCCTCTCCTCGTTCCCC 61.839 72.222 0.00 0.00 0.00 4.81
818 1172 3.471806 GCCTCTCCTCGTTCCCCC 61.472 72.222 0.00 0.00 0.00 5.40
819 1173 2.038975 CCTCTCCTCGTTCCCCCA 59.961 66.667 0.00 0.00 0.00 4.96
820 1174 1.383248 CCTCTCCTCGTTCCCCCAT 60.383 63.158 0.00 0.00 0.00 4.00
821 1175 1.403687 CCTCTCCTCGTTCCCCCATC 61.404 65.000 0.00 0.00 0.00 3.51
822 1176 1.382695 TCTCCTCGTTCCCCCATCC 60.383 63.158 0.00 0.00 0.00 3.51
823 1177 2.366435 TCCTCGTTCCCCCATCCC 60.366 66.667 0.00 0.00 0.00 3.85
824 1178 2.690881 CCTCGTTCCCCCATCCCA 60.691 66.667 0.00 0.00 0.00 4.37
825 1179 2.078665 CCTCGTTCCCCCATCCCAT 61.079 63.158 0.00 0.00 0.00 4.00
826 1180 1.451936 CTCGTTCCCCCATCCCATC 59.548 63.158 0.00 0.00 0.00 3.51
827 1181 2.056906 CTCGTTCCCCCATCCCATCC 62.057 65.000 0.00 0.00 0.00 3.51
828 1182 2.935188 GTTCCCCCATCCCATCCC 59.065 66.667 0.00 0.00 0.00 3.85
829 1183 2.012210 GTTCCCCCATCCCATCCCA 61.012 63.158 0.00 0.00 0.00 4.37
830 1184 1.008680 TTCCCCCATCCCATCCCAT 59.991 57.895 0.00 0.00 0.00 4.00
857 1211 1.953686 CCATCCGTCTCTCTCTTCTCC 59.046 57.143 0.00 0.00 0.00 3.71
859 1213 1.291109 TCCGTCTCTCTCTTCTCCCT 58.709 55.000 0.00 0.00 0.00 4.20
936 1291 2.553172 ACCGCGCCAATTAGTTTGTTAA 59.447 40.909 0.00 0.00 33.15 2.01
937 1292 3.168193 CCGCGCCAATTAGTTTGTTAAG 58.832 45.455 0.00 0.00 33.15 1.85
939 1294 4.223659 CGCGCCAATTAGTTTGTTAAGTT 58.776 39.130 0.00 0.00 33.15 2.66
940 1295 5.383958 CGCGCCAATTAGTTTGTTAAGTTA 58.616 37.500 0.00 0.00 33.15 2.24
941 1296 5.506832 CGCGCCAATTAGTTTGTTAAGTTAG 59.493 40.000 0.00 0.00 33.15 2.34
942 1297 5.798434 GCGCCAATTAGTTTGTTAAGTTAGG 59.202 40.000 0.00 0.00 33.15 2.69
946 1301 7.094334 GCCAATTAGTTTGTTAAGTTAGGAGCT 60.094 37.037 0.00 0.00 33.15 4.09
1389 1764 4.635765 TCTTTATGGAAGAACTGGATTGCG 59.364 41.667 0.00 0.00 41.34 4.85
1396 1771 2.079158 AGAACTGGATTGCGTGTCATG 58.921 47.619 0.00 0.00 0.00 3.07
1402 1777 2.212652 GGATTGCGTGTCATGCATCTA 58.787 47.619 20.13 6.46 40.22 1.98
1412 1787 6.212235 CGTGTCATGCATCTAGAATTCTACT 58.788 40.000 11.24 0.00 0.00 2.57
1427 1802 1.089920 CTACTGTGGATTGCAGTGGC 58.910 55.000 8.05 0.00 45.59 5.01
1508 1885 5.119125 GTGATTAAAGCTGGATTTTGTGTGC 59.881 40.000 0.00 0.00 0.00 4.57
1621 2000 2.694213 GTCTCTTGGCTTGTTCCTCTC 58.306 52.381 0.00 0.00 0.00 3.20
1718 2098 9.525409 CCCTTTTTCATTTCTGATCAATCATAC 57.475 33.333 0.00 0.00 36.02 2.39
1790 2170 6.974932 TGATGAACTTTAGCTCATGAACTC 57.025 37.500 0.90 0.00 31.64 3.01
2000 2383 2.742372 CCGTGTTTGAGGCCTCCG 60.742 66.667 29.95 23.41 0.00 4.63
2342 2735 3.181482 CGGCCATAGCTCATAGTATCTGG 60.181 52.174 2.24 0.00 39.73 3.86
2344 2737 4.142049 GGCCATAGCTCATAGTATCTGGTC 60.142 50.000 0.00 0.00 39.73 4.02
2345 2738 4.439426 GCCATAGCTCATAGTATCTGGTCG 60.439 50.000 0.00 0.00 35.50 4.79
2346 2739 4.944317 CCATAGCTCATAGTATCTGGTCGA 59.056 45.833 0.00 0.00 0.00 4.20
2347 2740 5.592282 CCATAGCTCATAGTATCTGGTCGAT 59.408 44.000 0.00 0.00 36.11 3.59
2348 2741 6.768381 CCATAGCTCATAGTATCTGGTCGATA 59.232 42.308 0.00 0.00 33.48 2.92
2349 2742 7.446931 CCATAGCTCATAGTATCTGGTCGATAT 59.553 40.741 0.00 0.00 36.99 1.63
2350 2743 6.691754 AGCTCATAGTATCTGGTCGATATG 57.308 41.667 0.00 0.00 36.99 1.78
2351 2744 6.418946 AGCTCATAGTATCTGGTCGATATGA 58.581 40.000 0.00 0.00 36.99 2.15
2366 2759 4.508861 TCGATATGATTGCATATGGCGATG 59.491 41.667 4.56 0.00 46.90 3.84
2433 2826 4.739716 ACAGCGTGTTAATTTGCTTTCAAG 59.260 37.500 0.00 0.00 34.99 3.02
2439 2832 7.095816 GCGTGTTAATTTGCTTTCAAGGTTAAT 60.096 33.333 0.00 0.00 32.25 1.40
2679 3075 8.883085 GCACAATGCAAAGTTCCAGACTTGAT 62.883 42.308 0.00 0.00 44.21 2.57
2764 3163 4.708421 AGTCCATTTTTGATCATGTCAGGG 59.292 41.667 0.00 0.00 38.29 4.45
2890 3289 7.693969 AGTCCTAAGATCAAAACAAAGATGG 57.306 36.000 0.00 0.00 0.00 3.51
2940 3339 0.035630 AGCATGCTTCCTGTCTGTCC 60.036 55.000 16.30 0.00 0.00 4.02
2953 3352 2.069273 GTCTGTCCGGTCTTGTGAATG 58.931 52.381 0.00 0.00 0.00 2.67
2954 3353 1.967779 TCTGTCCGGTCTTGTGAATGA 59.032 47.619 0.00 0.00 0.00 2.57
2955 3354 2.367241 TCTGTCCGGTCTTGTGAATGAA 59.633 45.455 0.00 0.00 0.00 2.57
2956 3355 3.007940 TCTGTCCGGTCTTGTGAATGAAT 59.992 43.478 0.00 0.00 0.00 2.57
2957 3356 3.073678 TGTCCGGTCTTGTGAATGAATG 58.926 45.455 0.00 0.00 0.00 2.67
2958 3357 3.244387 TGTCCGGTCTTGTGAATGAATGA 60.244 43.478 0.00 0.00 0.00 2.57
2959 3358 3.751175 GTCCGGTCTTGTGAATGAATGAA 59.249 43.478 0.00 0.00 0.00 2.57
2960 3359 4.215399 GTCCGGTCTTGTGAATGAATGAAA 59.785 41.667 0.00 0.00 0.00 2.69
2961 3360 4.824537 TCCGGTCTTGTGAATGAATGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
2962 3361 5.300539 TCCGGTCTTGTGAATGAATGAAAAA 59.699 36.000 0.00 0.00 0.00 1.94
3039 3438 7.577426 GCCAGTTTGATTGTTTGAATATGGAGA 60.577 37.037 0.00 0.00 0.00 3.71
3073 3472 5.964758 GGAACCAATCAATGATTGCTTGTA 58.035 37.500 25.91 0.00 45.48 2.41
3126 3525 3.587095 CCAGTGTGGCATGCAGAG 58.413 61.111 21.36 2.48 0.00 3.35
3127 3526 2.697761 CCAGTGTGGCATGCAGAGC 61.698 63.158 21.36 6.74 0.00 4.09
3128 3527 1.969589 CAGTGTGGCATGCAGAGCA 60.970 57.895 21.36 9.21 44.86 4.26
3129 3528 1.674651 AGTGTGGCATGCAGAGCAG 60.675 57.895 21.36 0.00 43.65 4.24
3130 3529 1.673337 GTGTGGCATGCAGAGCAGA 60.673 57.895 21.36 3.53 43.65 4.26
3131 3530 1.376812 TGTGGCATGCAGAGCAGAG 60.377 57.895 21.36 0.00 43.65 3.35
3132 3531 1.078637 GTGGCATGCAGAGCAGAGA 60.079 57.895 21.36 0.00 43.65 3.10
3133 3532 1.090625 GTGGCATGCAGAGCAGAGAG 61.091 60.000 21.36 0.00 43.65 3.20
3134 3533 2.181521 GGCATGCAGAGCAGAGAGC 61.182 63.158 21.36 0.00 43.65 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.403038 AGTGGCAGAGTGTCAAACATAC 58.597 45.455 0.00 0.00 31.67 2.39
20 21 1.486310 AGTGAGTGGCAGAGTGTCAAA 59.514 47.619 0.00 0.00 31.67 2.69
26 27 1.344763 GGTGTAAGTGAGTGGCAGAGT 59.655 52.381 0.00 0.00 0.00 3.24
30 31 2.254546 CTTGGTGTAAGTGAGTGGCA 57.745 50.000 0.00 0.00 0.00 4.92
86 94 2.765969 CTCATTGGGCCACAGGGT 59.234 61.111 5.23 0.00 36.17 4.34
109 117 2.044650 TGTACTCGTAGGCCGGCT 60.045 61.111 28.56 15.07 37.11 5.52
176 185 2.028130 TGGTTCACGCTGGTTGATTTT 58.972 42.857 0.00 0.00 0.00 1.82
282 299 1.886542 AGAATTGAAAAGTGCGTCCCC 59.113 47.619 0.00 0.00 0.00 4.81
345 362 0.321653 AACTAGCTTCGCCACTTGGG 60.322 55.000 0.00 0.00 40.85 4.12
350 367 0.444260 GCTTGAACTAGCTTCGCCAC 59.556 55.000 0.00 0.00 38.15 5.01
355 372 2.772287 ACCACTGCTTGAACTAGCTTC 58.228 47.619 0.00 0.00 41.76 3.86
423 440 2.354305 CGTATACGCCGGCTCACC 60.354 66.667 26.68 7.39 0.00 4.02
433 450 1.628983 CCGTGCAACAGCGTATACG 59.371 57.895 20.87 20.87 38.77 3.06
434 451 0.458889 TCCCGTGCAACAGCGTATAC 60.459 55.000 0.00 0.00 35.74 1.47
435 452 0.179121 CTCCCGTGCAACAGCGTATA 60.179 55.000 0.00 0.00 35.74 1.47
436 453 1.447838 CTCCCGTGCAACAGCGTAT 60.448 57.895 0.00 0.00 35.74 3.06
586 613 4.052518 ATGGGAGGTGGTGCTGGC 62.053 66.667 0.00 0.00 0.00 4.85
677 715 4.056125 TGAGGCGAGTGAGTGGCG 62.056 66.667 0.00 0.00 35.52 5.69
686 724 4.200283 GAGGCGAGGTGAGGCGAG 62.200 72.222 0.00 0.00 39.33 5.03
701 739 0.464013 TTAGAGAGAGACGGGGCGAG 60.464 60.000 0.00 0.00 0.00 5.03
731 769 4.161565 GGCGGATAGAGATAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
732 770 4.442706 GGCGGATAGAGATAGAGAGAGAG 58.557 52.174 0.00 0.00 0.00 3.20
768 1122 2.131067 GGGGCTTCGAGGAGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
772 1126 0.612732 TAAACGGGGCTTCGAGGAGA 60.613 55.000 0.00 0.00 0.00 3.71
773 1127 0.464452 ATAAACGGGGCTTCGAGGAG 59.536 55.000 0.00 0.00 0.00 3.69
774 1128 0.906775 AATAAACGGGGCTTCGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
775 1129 1.746470 AAATAAACGGGGCTTCGAGG 58.254 50.000 7.66 0.00 0.00 4.63
816 1170 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
817 1171 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
818 1172 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
819 1173 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
820 1174 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
821 1175 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
822 1176 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
823 1177 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
824 1178 1.210204 CGGATGGGATGGGATGGGAT 61.210 60.000 0.00 0.00 0.00 3.85
825 1179 1.847506 CGGATGGGATGGGATGGGA 60.848 63.158 0.00 0.00 0.00 4.37
826 1180 2.129555 GACGGATGGGATGGGATGGG 62.130 65.000 0.00 0.00 0.00 4.00
827 1181 1.130054 AGACGGATGGGATGGGATGG 61.130 60.000 0.00 0.00 0.00 3.51
828 1182 0.322975 GAGACGGATGGGATGGGATG 59.677 60.000 0.00 0.00 0.00 3.51
829 1183 0.192064 AGAGACGGATGGGATGGGAT 59.808 55.000 0.00 0.00 0.00 3.85
830 1184 0.470080 GAGAGACGGATGGGATGGGA 60.470 60.000 0.00 0.00 0.00 4.37
857 1211 1.339055 TGGACTGCAATCGAAGGAAGG 60.339 52.381 0.00 0.00 0.00 3.46
859 1213 2.290260 ACATGGACTGCAATCGAAGGAA 60.290 45.455 0.00 0.00 0.00 3.36
921 1276 8.336801 AGCTCCTAACTTAACAAACTAATTGG 57.663 34.615 0.00 0.00 43.66 3.16
946 1301 1.250328 CCTTGCTGCCTTGATCACAA 58.750 50.000 0.00 0.00 34.65 3.33
1389 1764 6.983307 ACAGTAGAATTCTAGATGCATGACAC 59.017 38.462 15.58 2.20 0.00 3.67
1396 1771 6.073331 GCAATCCACAGTAGAATTCTAGATGC 60.073 42.308 15.58 14.29 0.00 3.91
1402 1777 4.940046 CACTGCAATCCACAGTAGAATTCT 59.060 41.667 13.56 13.56 46.44 2.40
1412 1787 0.983467 TCTAGCCACTGCAATCCACA 59.017 50.000 0.00 0.00 41.13 4.17
1427 1802 2.614259 ACTCATGGGGGTAGCATCTAG 58.386 52.381 0.00 0.00 0.00 2.43
1437 1812 0.683973 CAGCTAGCTACTCATGGGGG 59.316 60.000 18.86 0.00 0.00 5.40
1508 1885 3.119291 CTCCATTCTAGTGCTACTTGCG 58.881 50.000 0.00 0.00 46.63 4.85
1621 2000 3.434299 GGCACAAAAGAAGCAAATCATGG 59.566 43.478 0.00 0.00 0.00 3.66
1718 2098 1.025812 AGATGACGAACCCTAGAGCG 58.974 55.000 0.00 0.00 0.00 5.03
1790 2170 7.420184 TCTGTAAACACACATGTACAAGATG 57.580 36.000 4.87 5.46 38.45 2.90
1990 2373 3.385384 CAGCAGACGGAGGCCTCA 61.385 66.667 33.29 0.00 0.00 3.86
2035 2418 3.250323 CGCAGCGTGTCGATGAGG 61.250 66.667 6.65 0.00 46.56 3.86
2272 2655 0.521867 CCGCTTGCATGTTCATGTCG 60.522 55.000 13.24 11.16 0.00 4.35
2301 2684 2.663188 CGGCCGGCTAGCTGATTC 60.663 66.667 28.56 12.70 42.00 2.52
2342 2735 3.865164 TCGCCATATGCAATCATATCGAC 59.135 43.478 0.00 0.00 42.40 4.20
2344 2737 4.319261 CCATCGCCATATGCAATCATATCG 60.319 45.833 0.00 0.00 42.40 2.92
2345 2738 4.818005 TCCATCGCCATATGCAATCATATC 59.182 41.667 0.00 0.00 42.40 1.63
2346 2739 4.784177 TCCATCGCCATATGCAATCATAT 58.216 39.130 0.00 0.00 44.48 1.78
2347 2740 4.219264 TCCATCGCCATATGCAATCATA 57.781 40.909 0.00 0.00 41.33 2.15
2348 2741 3.076079 TCCATCGCCATATGCAATCAT 57.924 42.857 0.00 0.00 41.33 2.45
2349 2742 2.565046 TCCATCGCCATATGCAATCA 57.435 45.000 0.00 0.00 41.33 2.57
2350 2743 3.276857 AGATCCATCGCCATATGCAATC 58.723 45.455 0.00 0.00 41.33 2.67
2351 2744 3.276857 GAGATCCATCGCCATATGCAAT 58.723 45.455 0.00 0.00 41.33 3.56
2366 2759 0.888619 CCATGGCATGCATGAGATCC 59.111 55.000 30.64 20.72 32.09 3.36
2392 2785 8.851145 ACACGCTGTATAGTAGTAGTAGTAGTA 58.149 37.037 2.65 2.65 0.00 1.82
2393 2786 7.721402 ACACGCTGTATAGTAGTAGTAGTAGT 58.279 38.462 0.00 0.00 0.00 2.73
2394 2787 8.586570 AACACGCTGTATAGTAGTAGTAGTAG 57.413 38.462 0.00 0.00 0.00 2.57
2396 2789 8.948631 TTAACACGCTGTATAGTAGTAGTAGT 57.051 34.615 0.00 0.00 0.00 2.73
2433 2826 9.968870 TTAACCATCACACAAAACTAATTAACC 57.031 29.630 0.00 0.00 0.00 2.85
2959 3358 5.308976 AGCCCCAAACATTCATTCTTTTT 57.691 34.783 0.00 0.00 0.00 1.94
2960 3359 4.980339 AGCCCCAAACATTCATTCTTTT 57.020 36.364 0.00 0.00 0.00 2.27
2961 3360 4.505390 CCAAGCCCCAAACATTCATTCTTT 60.505 41.667 0.00 0.00 0.00 2.52
2962 3361 3.008266 CCAAGCCCCAAACATTCATTCTT 59.992 43.478 0.00 0.00 0.00 2.52
2963 3362 2.568509 CCAAGCCCCAAACATTCATTCT 59.431 45.455 0.00 0.00 0.00 2.40
3039 3438 2.721906 TGATTGGTTCCCCTTTCCTCTT 59.278 45.455 0.00 0.00 0.00 2.85
3125 3524 1.592743 CTGCTCACTGCTCTCTGCT 59.407 57.895 0.00 0.00 43.37 4.24
3126 3525 2.101835 GCTGCTCACTGCTCTCTGC 61.102 63.158 0.00 0.00 43.37 4.26
3127 3526 4.188702 GCTGCTCACTGCTCTCTG 57.811 61.111 0.00 0.00 43.37 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.