Multiple sequence alignment - TraesCS5A01G465600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G465600 chr5A 100.000 2270 0 0 1 2270 644357804 644360073 0.000000e+00 4193
1 TraesCS5A01G465600 chr5A 84.509 652 60 21 637 1270 644456298 644455670 6.930000e-170 606
2 TraesCS5A01G465600 chr5A 82.430 683 53 23 603 1270 644501915 644501285 3.320000e-148 534
3 TraesCS5A01G465600 chr5A 81.044 728 83 26 640 1360 644445324 644444645 1.540000e-146 529
4 TraesCS5A01G465600 chr5D 89.216 1020 68 24 576 1579 517317456 517318449 0.000000e+00 1236
5 TraesCS5A01G465600 chr5D 88.620 993 50 26 586 1540 517270273 517271240 0.000000e+00 1149
6 TraesCS5A01G465600 chr5D 92.369 747 39 7 1542 2270 517281167 517281913 0.000000e+00 1048
7 TraesCS5A01G465600 chr5D 88.824 680 49 13 1575 2232 517319042 517319716 0.000000e+00 809
8 TraesCS5A01G465600 chr5D 93.578 327 10 3 44 366 517317142 517317461 5.670000e-131 477
9 TraesCS5A01G465600 chr5D 84.402 468 38 10 619 1066 517360493 517360041 5.790000e-116 427
10 TraesCS5A01G465600 chr5D 84.492 374 36 8 1096 1465 517360047 517359692 1.290000e-92 350
11 TraesCS5A01G465600 chr5D 87.129 303 6 5 57 359 517270003 517270272 1.690000e-81 313
12 TraesCS5A01G465600 chr5D 79.050 358 51 19 1730 2074 486247976 486248322 8.160000e-55 224
13 TraesCS5A01G465600 chr5D 82.759 232 27 10 1845 2071 40181276 40181499 6.400000e-46 195
14 TraesCS5A01G465600 chr5D 75.515 388 81 9 1686 2068 385926471 385926849 6.440000e-41 178
15 TraesCS5A01G465600 chr5D 92.941 85 6 0 491 575 436255414 436255498 8.510000e-25 124
16 TraesCS5A01G465600 chr5B 89.301 916 44 19 580 1470 649729365 649730251 0.000000e+00 1099
17 TraesCS5A01G465600 chr5B 91.847 785 40 9 1508 2270 649730238 649731020 0.000000e+00 1074
18 TraesCS5A01G465600 chr5B 86.402 706 67 14 580 1272 649540141 649540830 0.000000e+00 745
19 TraesCS5A01G465600 chr5B 82.449 735 66 32 637 1361 649859561 649858880 3.250000e-163 584
20 TraesCS5A01G465600 chr5B 93.865 326 10 4 44 364 649539824 649540144 1.220000e-132 483
21 TraesCS5A01G465600 chr5B 79.837 734 75 34 668 1400 649829156 649828495 3.410000e-128 468
22 TraesCS5A01G465600 chr5B 80.952 273 39 10 1740 2003 108799115 108798847 1.060000e-48 204
23 TraesCS5A01G465600 chr5B 91.919 99 2 2 267 364 649729275 649729368 1.410000e-27 134
24 TraesCS5A01G465600 chr5B 91.111 90 7 1 491 579 103324116 103324205 1.100000e-23 121
25 TraesCS5A01G465600 chr2A 79.944 359 47 17 1727 2073 745293626 745293971 8.100000e-60 241
26 TraesCS5A01G465600 chr3D 82.517 286 36 9 1798 2073 346642823 346643104 2.910000e-59 239
27 TraesCS5A01G465600 chr3D 91.736 121 9 1 367 486 585056128 585056248 1.390000e-37 167
28 TraesCS5A01G465600 chr3D 91.860 86 7 0 494 579 6303831 6303746 1.100000e-23 121
29 TraesCS5A01G465600 chr3D 74.063 347 58 15 1741 2078 596881857 596881534 1.840000e-21 113
30 TraesCS5A01G465600 chr6D 77.348 362 60 16 1728 2073 42113172 42112817 6.400000e-46 195
31 TraesCS5A01G465600 chr6D 96.154 78 3 0 498 575 161718336 161718259 6.580000e-26 128
32 TraesCS5A01G465600 chr6D 90.323 93 7 2 494 586 469944846 469944756 1.100000e-23 121
33 TraesCS5A01G465600 chr1A 79.926 269 33 17 1748 2001 403631547 403631809 6.440000e-41 178
34 TraesCS5A01G465600 chr1A 93.976 83 5 0 494 576 403144276 403144194 2.370000e-25 126
35 TraesCS5A01G465600 chr6B 92.500 120 9 0 367 486 225554393 225554512 3.000000e-39 172
36 TraesCS5A01G465600 chr6B 78.981 157 25 5 1754 1903 679751981 679751826 1.430000e-17 100
37 TraesCS5A01G465600 chr7B 91.057 123 11 0 367 489 640484280 640484158 1.390000e-37 167
38 TraesCS5A01G465600 chr7A 91.057 123 11 0 367 489 85740366 85740488 1.390000e-37 167
39 TraesCS5A01G465600 chr4D 91.057 123 11 0 367 489 485381630 485381508 1.390000e-37 167
40 TraesCS5A01G465600 chr1B 91.667 120 10 0 367 486 670874402 670874521 1.390000e-37 167
41 TraesCS5A01G465600 chr1B 93.902 82 5 0 494 575 164842403 164842322 8.510000e-25 124
42 TraesCS5A01G465600 chr4B 81.043 211 33 5 1847 2052 455362826 455363034 6.490000e-36 161
43 TraesCS5A01G465600 chr4A 90.833 120 11 0 367 486 691073925 691074044 6.490000e-36 161
44 TraesCS5A01G465600 chr4A 85.806 155 17 4 367 519 170805644 170805795 2.330000e-35 159
45 TraesCS5A01G465600 chr4A 78.641 206 27 14 1880 2073 618563415 618563615 1.100000e-23 121
46 TraesCS5A01G465600 chr4A 76.522 230 37 11 1734 1956 176782150 176781931 2.380000e-20 110
47 TraesCS5A01G465600 chr2D 90.244 123 12 0 367 489 643067942 643067820 6.490000e-36 161
48 TraesCS5A01G465600 chr3B 77.820 266 45 10 1813 2071 734164130 734164388 3.910000e-33 152
49 TraesCS5A01G465600 chr3B 90.217 92 8 1 485 576 598973856 598973946 3.960000e-23 119
50 TraesCS5A01G465600 chr3A 90.217 92 7 2 485 576 715942442 715942531 3.960000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G465600 chr5A 644357804 644360073 2269 False 4193.000000 4193 100.000000 1 2270 1 chr5A.!!$F1 2269
1 TraesCS5A01G465600 chr5A 644455670 644456298 628 True 606.000000 606 84.509000 637 1270 1 chr5A.!!$R2 633
2 TraesCS5A01G465600 chr5A 644501285 644501915 630 True 534.000000 534 82.430000 603 1270 1 chr5A.!!$R3 667
3 TraesCS5A01G465600 chr5A 644444645 644445324 679 True 529.000000 529 81.044000 640 1360 1 chr5A.!!$R1 720
4 TraesCS5A01G465600 chr5D 517281167 517281913 746 False 1048.000000 1048 92.369000 1542 2270 1 chr5D.!!$F5 728
5 TraesCS5A01G465600 chr5D 517317142 517319716 2574 False 840.666667 1236 90.539333 44 2232 3 chr5D.!!$F7 2188
6 TraesCS5A01G465600 chr5D 517270003 517271240 1237 False 731.000000 1149 87.874500 57 1540 2 chr5D.!!$F6 1483
7 TraesCS5A01G465600 chr5D 517359692 517360493 801 True 388.500000 427 84.447000 619 1465 2 chr5D.!!$R1 846
8 TraesCS5A01G465600 chr5B 649729275 649731020 1745 False 769.000000 1099 91.022333 267 2270 3 chr5B.!!$F3 2003
9 TraesCS5A01G465600 chr5B 649539824 649540830 1006 False 614.000000 745 90.133500 44 1272 2 chr5B.!!$F2 1228
10 TraesCS5A01G465600 chr5B 649858880 649859561 681 True 584.000000 584 82.449000 637 1361 1 chr5B.!!$R3 724
11 TraesCS5A01G465600 chr5B 649828495 649829156 661 True 468.000000 468 79.837000 668 1400 1 chr5B.!!$R2 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 332 0.038251 TTACGTGCCACTGAGCTGAG 60.038 55.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 2393 0.54083 AGCTCGGACTGAGGAACACT 60.541 55.0 13.25 0.0 45.38 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.502142 TGTCCTTGCAGCATCTCATT 57.498 45.000 0.00 0.00 0.00 2.57
20 21 2.799017 TGTCCTTGCAGCATCTCATTT 58.201 42.857 0.00 0.00 0.00 2.32
21 22 3.954200 TGTCCTTGCAGCATCTCATTTA 58.046 40.909 0.00 0.00 0.00 1.40
22 23 4.334552 TGTCCTTGCAGCATCTCATTTAA 58.665 39.130 0.00 0.00 0.00 1.52
23 24 4.397103 TGTCCTTGCAGCATCTCATTTAAG 59.603 41.667 0.00 0.00 0.00 1.85
24 25 3.379372 TCCTTGCAGCATCTCATTTAAGC 59.621 43.478 0.00 0.00 0.00 3.09
25 26 3.490419 CCTTGCAGCATCTCATTTAAGCC 60.490 47.826 0.00 0.00 0.00 4.35
26 27 2.725637 TGCAGCATCTCATTTAAGCCA 58.274 42.857 0.00 0.00 0.00 4.75
27 28 2.686405 TGCAGCATCTCATTTAAGCCAG 59.314 45.455 0.00 0.00 0.00 4.85
28 29 2.543238 GCAGCATCTCATTTAAGCCAGC 60.543 50.000 0.00 0.00 0.00 4.85
29 30 2.950309 CAGCATCTCATTTAAGCCAGCT 59.050 45.455 0.00 0.00 0.00 4.24
30 31 2.950309 AGCATCTCATTTAAGCCAGCTG 59.050 45.455 6.78 6.78 0.00 4.24
31 32 2.686915 GCATCTCATTTAAGCCAGCTGT 59.313 45.455 13.81 0.00 0.00 4.40
32 33 3.129988 GCATCTCATTTAAGCCAGCTGTT 59.870 43.478 13.81 3.71 0.00 3.16
33 34 4.381292 GCATCTCATTTAAGCCAGCTGTTT 60.381 41.667 13.81 9.33 0.00 2.83
34 35 4.771590 TCTCATTTAAGCCAGCTGTTTG 57.228 40.909 13.81 0.00 0.00 2.93
35 36 4.144297 TCTCATTTAAGCCAGCTGTTTGT 58.856 39.130 13.81 0.00 0.00 2.83
36 37 5.312895 TCTCATTTAAGCCAGCTGTTTGTA 58.687 37.500 13.81 0.00 0.00 2.41
37 38 5.412594 TCTCATTTAAGCCAGCTGTTTGTAG 59.587 40.000 13.81 0.00 0.00 2.74
38 39 4.458989 TCATTTAAGCCAGCTGTTTGTAGG 59.541 41.667 13.81 0.00 0.00 3.18
39 40 1.821216 TAAGCCAGCTGTTTGTAGGC 58.179 50.000 13.81 6.94 45.54 3.93
40 41 4.079446 GCCAGCTGTTTGTAGGCA 57.921 55.556 13.81 0.00 44.59 4.75
41 42 2.571548 GCCAGCTGTTTGTAGGCAT 58.428 52.632 13.81 0.00 44.59 4.40
42 43 0.890683 GCCAGCTGTTTGTAGGCATT 59.109 50.000 13.81 0.00 44.59 3.56
130 137 5.392767 ACTCCTGTACAGTTGATAGTGTG 57.607 43.478 21.18 7.00 38.39 3.82
154 161 5.327091 CAAGAACGCCATAGATTTGACAAG 58.673 41.667 0.00 0.00 0.00 3.16
321 328 1.291877 CCAGTTACGTGCCACTGAGC 61.292 60.000 20.15 0.00 42.74 4.26
322 329 0.319900 CAGTTACGTGCCACTGAGCT 60.320 55.000 15.63 0.00 42.74 4.09
323 330 0.319900 AGTTACGTGCCACTGAGCTG 60.320 55.000 0.00 0.00 0.00 4.24
324 331 0.319555 GTTACGTGCCACTGAGCTGA 60.320 55.000 0.00 0.00 0.00 4.26
325 332 0.038251 TTACGTGCCACTGAGCTGAG 60.038 55.000 0.00 0.00 0.00 3.35
366 374 4.494199 GCACGGTTCTTTCAATTAGATCGG 60.494 45.833 0.00 0.00 0.00 4.18
368 376 5.121768 CACGGTTCTTTCAATTAGATCGGTT 59.878 40.000 0.00 0.00 0.00 4.44
369 377 5.121768 ACGGTTCTTTCAATTAGATCGGTTG 59.878 40.000 0.00 2.56 0.00 3.77
370 378 5.350365 CGGTTCTTTCAATTAGATCGGTTGA 59.650 40.000 6.43 6.43 0.00 3.18
371 379 6.543736 GGTTCTTTCAATTAGATCGGTTGAC 58.456 40.000 9.12 1.25 32.10 3.18
372 380 6.148811 GGTTCTTTCAATTAGATCGGTTGACA 59.851 38.462 9.12 4.15 32.10 3.58
373 381 7.148239 GGTTCTTTCAATTAGATCGGTTGACAT 60.148 37.037 9.12 0.00 32.10 3.06
374 382 8.879759 GTTCTTTCAATTAGATCGGTTGACATA 58.120 33.333 9.12 0.00 32.10 2.29
375 383 9.613428 TTCTTTCAATTAGATCGGTTGACATAT 57.387 29.630 9.12 0.00 32.10 1.78
386 394 9.424319 AGATCGGTTGACATATAATATGTTGTC 57.576 33.333 7.37 7.37 39.11 3.18
387 395 9.424319 GATCGGTTGACATATAATATGTTGTCT 57.576 33.333 14.77 0.40 39.33 3.41
389 397 9.908152 TCGGTTGACATATAATATGTTGTCTAG 57.092 33.333 14.77 0.00 39.33 2.43
390 398 9.692749 CGGTTGACATATAATATGTTGTCTAGT 57.307 33.333 14.77 0.00 39.33 2.57
400 408 9.703892 ATAATATGTTGTCTAGTCTCTTGCATC 57.296 33.333 0.00 0.00 0.00 3.91
401 409 4.871933 TGTTGTCTAGTCTCTTGCATCA 57.128 40.909 0.00 0.00 0.00 3.07
402 410 4.814147 TGTTGTCTAGTCTCTTGCATCAG 58.186 43.478 0.00 0.00 0.00 2.90
403 411 4.524328 TGTTGTCTAGTCTCTTGCATCAGA 59.476 41.667 0.00 0.00 0.00 3.27
404 412 5.186603 TGTTGTCTAGTCTCTTGCATCAGAT 59.813 40.000 0.00 0.00 0.00 2.90
405 413 5.512753 TGTCTAGTCTCTTGCATCAGATC 57.487 43.478 0.00 0.00 0.00 2.75
406 414 4.036144 TGTCTAGTCTCTTGCATCAGATCG 59.964 45.833 0.00 0.00 0.00 3.69
407 415 4.274705 GTCTAGTCTCTTGCATCAGATCGA 59.725 45.833 0.00 0.00 0.00 3.59
408 416 5.048782 GTCTAGTCTCTTGCATCAGATCGAT 60.049 44.000 0.00 0.00 33.27 3.59
409 417 4.669206 AGTCTCTTGCATCAGATCGATT 57.331 40.909 0.00 0.00 29.21 3.34
410 418 5.021033 AGTCTCTTGCATCAGATCGATTT 57.979 39.130 0.00 0.00 29.21 2.17
411 419 5.426504 AGTCTCTTGCATCAGATCGATTTT 58.573 37.500 0.00 0.00 29.21 1.82
412 420 5.879223 AGTCTCTTGCATCAGATCGATTTTT 59.121 36.000 0.00 0.00 29.21 1.94
431 439 3.658757 TTTGGTTGCATTGGTTAGAGC 57.341 42.857 0.00 0.00 0.00 4.09
432 440 2.284754 TGGTTGCATTGGTTAGAGCA 57.715 45.000 0.00 0.00 34.79 4.26
433 441 2.806434 TGGTTGCATTGGTTAGAGCAT 58.194 42.857 0.00 0.00 36.80 3.79
434 442 2.492881 TGGTTGCATTGGTTAGAGCATG 59.507 45.455 0.00 0.00 36.80 4.06
435 443 2.533266 GTTGCATTGGTTAGAGCATGC 58.467 47.619 10.51 10.51 36.80 4.06
436 444 1.836802 TGCATTGGTTAGAGCATGCA 58.163 45.000 21.98 1.57 37.58 3.96
437 445 1.473677 TGCATTGGTTAGAGCATGCAC 59.526 47.619 21.98 14.59 36.23 4.57
438 446 1.747355 GCATTGGTTAGAGCATGCACT 59.253 47.619 21.45 21.45 33.54 4.40
439 447 2.165030 GCATTGGTTAGAGCATGCACTT 59.835 45.455 22.83 8.33 33.54 3.16
440 448 3.733077 GCATTGGTTAGAGCATGCACTTC 60.733 47.826 22.83 15.30 33.54 3.01
441 449 3.423539 TTGGTTAGAGCATGCACTTCT 57.576 42.857 22.83 17.00 0.00 2.85
442 450 4.551702 TTGGTTAGAGCATGCACTTCTA 57.448 40.909 22.83 15.97 0.00 2.10
443 451 3.861840 TGGTTAGAGCATGCACTTCTAC 58.138 45.455 22.83 16.77 0.00 2.59
444 452 3.260632 TGGTTAGAGCATGCACTTCTACA 59.739 43.478 22.83 13.62 0.00 2.74
445 453 4.080919 TGGTTAGAGCATGCACTTCTACAT 60.081 41.667 22.83 0.00 0.00 2.29
446 454 4.272018 GGTTAGAGCATGCACTTCTACATG 59.728 45.833 22.83 0.00 45.19 3.21
447 455 2.915349 AGAGCATGCACTTCTACATGG 58.085 47.619 21.98 0.00 43.13 3.66
448 456 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
451 459 4.739046 GCATGCACTTCTACATGGTATC 57.261 45.455 14.21 0.00 43.13 2.24
452 460 4.129380 GCATGCACTTCTACATGGTATCA 58.871 43.478 14.21 0.00 43.13 2.15
453 461 4.576053 GCATGCACTTCTACATGGTATCAA 59.424 41.667 14.21 0.00 43.13 2.57
454 462 5.066375 GCATGCACTTCTACATGGTATCAAA 59.934 40.000 14.21 0.00 43.13 2.69
455 463 6.722301 CATGCACTTCTACATGGTATCAAAG 58.278 40.000 0.00 0.00 39.98 2.77
456 464 4.635765 TGCACTTCTACATGGTATCAAAGC 59.364 41.667 0.00 0.00 0.00 3.51
457 465 4.878397 GCACTTCTACATGGTATCAAAGCT 59.122 41.667 0.00 0.00 0.00 3.74
458 466 6.049149 GCACTTCTACATGGTATCAAAGCTA 58.951 40.000 0.00 0.00 0.00 3.32
459 467 6.538742 GCACTTCTACATGGTATCAAAGCTAA 59.461 38.462 0.00 0.00 0.00 3.09
460 468 7.254590 GCACTTCTACATGGTATCAAAGCTAAG 60.255 40.741 0.00 0.00 0.00 2.18
461 469 7.981789 CACTTCTACATGGTATCAAAGCTAAGA 59.018 37.037 0.00 0.00 0.00 2.10
462 470 8.200792 ACTTCTACATGGTATCAAAGCTAAGAG 58.799 37.037 0.00 0.00 0.00 2.85
463 471 7.055667 TCTACATGGTATCAAAGCTAAGAGG 57.944 40.000 0.00 0.00 0.00 3.69
464 472 5.700402 ACATGGTATCAAAGCTAAGAGGT 57.300 39.130 0.00 0.00 0.00 3.85
465 473 6.067217 ACATGGTATCAAAGCTAAGAGGTT 57.933 37.500 0.00 0.00 37.57 3.50
466 474 6.485171 ACATGGTATCAAAGCTAAGAGGTTT 58.515 36.000 0.00 0.00 45.69 3.27
467 475 6.948309 ACATGGTATCAAAGCTAAGAGGTTTT 59.052 34.615 0.00 0.00 42.60 2.43
468 476 6.817765 TGGTATCAAAGCTAAGAGGTTTTG 57.182 37.500 1.05 0.00 42.60 2.44
469 477 6.539173 TGGTATCAAAGCTAAGAGGTTTTGA 58.461 36.000 8.42 8.42 42.60 2.69
470 478 6.655003 TGGTATCAAAGCTAAGAGGTTTTGAG 59.345 38.462 10.89 0.00 42.60 3.02
471 479 6.655425 GGTATCAAAGCTAAGAGGTTTTGAGT 59.345 38.462 10.89 4.48 42.60 3.41
472 480 7.175119 GGTATCAAAGCTAAGAGGTTTTGAGTT 59.825 37.037 10.89 1.05 42.60 3.01
473 481 6.619801 TCAAAGCTAAGAGGTTTTGAGTTC 57.380 37.500 1.05 0.00 42.60 3.01
474 482 6.119536 TCAAAGCTAAGAGGTTTTGAGTTCA 58.880 36.000 1.05 0.00 42.60 3.18
475 483 6.601613 TCAAAGCTAAGAGGTTTTGAGTTCAA 59.398 34.615 1.05 0.00 42.60 2.69
476 484 6.625873 AAGCTAAGAGGTTTTGAGTTCAAG 57.374 37.500 0.00 0.00 37.15 3.02
477 485 5.930135 AGCTAAGAGGTTTTGAGTTCAAGA 58.070 37.500 0.00 0.00 37.15 3.02
478 486 5.760743 AGCTAAGAGGTTTTGAGTTCAAGAC 59.239 40.000 6.92 6.92 39.41 3.01
483 491 1.001706 GTTTTGAGTTCAAGACCCGGC 60.002 52.381 0.00 0.00 35.62 6.13
484 492 0.472471 TTTGAGTTCAAGACCCGGCT 59.528 50.000 0.00 0.00 37.15 5.52
485 493 0.250295 TTGAGTTCAAGACCCGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
486 494 1.118965 TGAGTTCAAGACCCGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
487 495 0.670854 GAGTTCAAGACCCGGCTGAC 60.671 60.000 0.00 0.00 0.00 3.51
488 496 2.027625 GTTCAAGACCCGGCTGACG 61.028 63.158 0.00 0.00 43.80 4.35
500 508 2.961526 GGCTGACGAGGAAGTATTGA 57.038 50.000 0.00 0.00 0.00 2.57
501 509 2.541556 GGCTGACGAGGAAGTATTGAC 58.458 52.381 0.00 0.00 0.00 3.18
502 510 2.094182 GGCTGACGAGGAAGTATTGACA 60.094 50.000 0.00 0.00 0.00 3.58
503 511 3.430929 GGCTGACGAGGAAGTATTGACAT 60.431 47.826 0.00 0.00 0.00 3.06
504 512 4.202121 GGCTGACGAGGAAGTATTGACATA 60.202 45.833 0.00 0.00 0.00 2.29
505 513 5.509840 GGCTGACGAGGAAGTATTGACATAT 60.510 44.000 0.00 0.00 0.00 1.78
506 514 6.294564 GGCTGACGAGGAAGTATTGACATATA 60.295 42.308 0.00 0.00 0.00 0.86
507 515 7.145985 GCTGACGAGGAAGTATTGACATATAA 58.854 38.462 0.00 0.00 0.00 0.98
508 516 7.815068 GCTGACGAGGAAGTATTGACATATAAT 59.185 37.037 0.00 0.00 0.00 1.28
509 517 9.133627 CTGACGAGGAAGTATTGACATATAATG 57.866 37.037 0.00 0.00 0.00 1.90
511 519 8.818141 ACGAGGAAGTATTGACATATAATGTG 57.182 34.615 0.00 0.00 45.03 3.21
512 520 8.421784 ACGAGGAAGTATTGACATATAATGTGT 58.578 33.333 0.00 0.00 45.03 3.72
513 521 9.261180 CGAGGAAGTATTGACATATAATGTGTT 57.739 33.333 0.00 0.00 45.03 3.32
515 523 8.840321 AGGAAGTATTGACATATAATGTGTTGC 58.160 33.333 0.00 0.00 45.03 4.17
516 524 8.076178 GGAAGTATTGACATATAATGTGTTGCC 58.924 37.037 0.00 0.00 45.03 4.52
517 525 8.752005 AAGTATTGACATATAATGTGTTGCCT 57.248 30.769 0.00 0.00 45.03 4.75
518 526 9.845740 AAGTATTGACATATAATGTGTTGCCTA 57.154 29.630 0.00 0.00 45.03 3.93
519 527 9.494271 AGTATTGACATATAATGTGTTGCCTAG 57.506 33.333 0.00 0.00 45.03 3.02
520 528 9.273016 GTATTGACATATAATGTGTTGCCTAGT 57.727 33.333 0.00 0.00 45.03 2.57
521 529 7.786178 TTGACATATAATGTGTTGCCTAGTC 57.214 36.000 0.00 0.00 45.03 2.59
522 530 7.124573 TGACATATAATGTGTTGCCTAGTCT 57.875 36.000 0.00 0.00 45.03 3.24
523 531 7.564793 TGACATATAATGTGTTGCCTAGTCTT 58.435 34.615 0.00 0.00 45.03 3.01
524 532 8.046708 TGACATATAATGTGTTGCCTAGTCTTT 58.953 33.333 0.00 0.00 45.03 2.52
525 533 8.807948 ACATATAATGTGTTGCCTAGTCTTTT 57.192 30.769 0.00 0.00 43.01 2.27
526 534 9.243105 ACATATAATGTGTTGCCTAGTCTTTTT 57.757 29.630 0.00 0.00 43.01 1.94
527 535 9.722056 CATATAATGTGTTGCCTAGTCTTTTTC 57.278 33.333 0.00 0.00 0.00 2.29
528 536 7.759489 ATAATGTGTTGCCTAGTCTTTTTCA 57.241 32.000 0.00 0.00 0.00 2.69
529 537 6.655078 AATGTGTTGCCTAGTCTTTTTCAT 57.345 33.333 0.00 0.00 0.00 2.57
530 538 5.689383 TGTGTTGCCTAGTCTTTTTCATC 57.311 39.130 0.00 0.00 0.00 2.92
531 539 5.129634 TGTGTTGCCTAGTCTTTTTCATCA 58.870 37.500 0.00 0.00 0.00 3.07
532 540 5.239306 TGTGTTGCCTAGTCTTTTTCATCAG 59.761 40.000 0.00 0.00 0.00 2.90
533 541 5.470098 GTGTTGCCTAGTCTTTTTCATCAGA 59.530 40.000 0.00 0.00 0.00 3.27
534 542 6.150140 GTGTTGCCTAGTCTTTTTCATCAGAT 59.850 38.462 0.00 0.00 0.00 2.90
535 543 6.372659 TGTTGCCTAGTCTTTTTCATCAGATC 59.627 38.462 0.00 0.00 0.00 2.75
536 544 5.111989 TGCCTAGTCTTTTTCATCAGATCG 58.888 41.667 0.00 0.00 0.00 3.69
537 545 4.509600 GCCTAGTCTTTTTCATCAGATCGG 59.490 45.833 0.00 0.00 0.00 4.18
538 546 5.665459 CCTAGTCTTTTTCATCAGATCGGT 58.335 41.667 0.00 0.00 0.00 4.69
539 547 5.751028 CCTAGTCTTTTTCATCAGATCGGTC 59.249 44.000 0.00 0.00 0.00 4.79
540 548 5.413309 AGTCTTTTTCATCAGATCGGTCT 57.587 39.130 0.00 0.00 34.14 3.85
541 549 5.799213 AGTCTTTTTCATCAGATCGGTCTT 58.201 37.500 0.00 0.00 30.42 3.01
542 550 6.234177 AGTCTTTTTCATCAGATCGGTCTTT 58.766 36.000 0.00 0.00 30.42 2.52
543 551 6.712547 AGTCTTTTTCATCAGATCGGTCTTTT 59.287 34.615 0.00 0.00 30.42 2.27
544 552 6.798959 GTCTTTTTCATCAGATCGGTCTTTTG 59.201 38.462 0.00 0.00 30.42 2.44
545 553 5.627499 TTTTCATCAGATCGGTCTTTTGG 57.373 39.130 0.00 0.00 30.42 3.28
546 554 3.981071 TCATCAGATCGGTCTTTTGGT 57.019 42.857 0.00 0.00 30.42 3.67
547 555 4.286297 TCATCAGATCGGTCTTTTGGTT 57.714 40.909 0.00 0.00 30.42 3.67
548 556 4.002982 TCATCAGATCGGTCTTTTGGTTG 58.997 43.478 0.00 0.00 30.42 3.77
549 557 2.151202 TCAGATCGGTCTTTTGGTTGC 58.849 47.619 0.00 0.00 30.42 4.17
550 558 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
551 559 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
552 560 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
553 561 4.155826 CAGATCGGTCTTTTGGTTGCATTA 59.844 41.667 0.00 0.00 30.42 1.90
554 562 4.396166 AGATCGGTCTTTTGGTTGCATTAG 59.604 41.667 0.00 0.00 0.00 1.73
555 563 2.227865 TCGGTCTTTTGGTTGCATTAGC 59.772 45.455 0.00 0.00 42.57 3.09
556 564 2.228822 CGGTCTTTTGGTTGCATTAGCT 59.771 45.455 0.00 0.00 42.74 3.32
557 565 3.438781 CGGTCTTTTGGTTGCATTAGCTA 59.561 43.478 0.00 0.00 42.74 3.32
558 566 4.437390 CGGTCTTTTGGTTGCATTAGCTAG 60.437 45.833 0.00 0.00 42.74 3.42
559 567 4.700213 GGTCTTTTGGTTGCATTAGCTAGA 59.300 41.667 0.00 0.00 42.74 2.43
560 568 5.183140 GGTCTTTTGGTTGCATTAGCTAGAA 59.817 40.000 0.00 0.00 42.74 2.10
561 569 6.086871 GTCTTTTGGTTGCATTAGCTAGAAC 58.913 40.000 0.00 0.00 42.74 3.01
562 570 5.767665 TCTTTTGGTTGCATTAGCTAGAACA 59.232 36.000 0.00 0.00 42.74 3.18
563 571 6.434028 TCTTTTGGTTGCATTAGCTAGAACAT 59.566 34.615 0.00 0.00 42.74 2.71
564 572 5.565592 TTGGTTGCATTAGCTAGAACATG 57.434 39.130 0.00 0.00 42.74 3.21
565 573 3.378112 TGGTTGCATTAGCTAGAACATGC 59.622 43.478 17.52 17.52 42.07 4.06
568 576 3.877559 TGCATTAGCTAGAACATGCACT 58.122 40.909 21.42 0.00 45.50 4.40
569 577 4.264253 TGCATTAGCTAGAACATGCACTT 58.736 39.130 21.42 0.00 45.50 3.16
570 578 4.333649 TGCATTAGCTAGAACATGCACTTC 59.666 41.667 21.42 0.00 45.50 3.01
571 579 4.574013 GCATTAGCTAGAACATGCACTTCT 59.426 41.667 18.86 12.06 41.47 2.85
572 580 5.755375 GCATTAGCTAGAACATGCACTTCTA 59.245 40.000 18.86 12.84 41.47 2.10
573 581 6.292596 GCATTAGCTAGAACATGCACTTCTAC 60.293 42.308 18.86 8.50 41.47 2.59
574 582 4.808414 AGCTAGAACATGCACTTCTACA 57.192 40.909 10.39 0.00 0.00 2.74
575 583 5.152623 AGCTAGAACATGCACTTCTACAA 57.847 39.130 10.39 0.00 0.00 2.41
576 584 5.174395 AGCTAGAACATGCACTTCTACAAG 58.826 41.667 10.39 5.98 35.50 3.16
577 585 5.047021 AGCTAGAACATGCACTTCTACAAGA 60.047 40.000 10.39 0.00 33.34 3.02
578 586 5.814705 GCTAGAACATGCACTTCTACAAGAT 59.185 40.000 10.39 0.00 33.34 2.40
579 587 6.019156 GCTAGAACATGCACTTCTACAAGATC 60.019 42.308 10.39 0.00 33.34 2.75
580 588 4.867047 AGAACATGCACTTCTACAAGATCG 59.133 41.667 6.68 0.00 33.34 3.69
581 589 4.456280 ACATGCACTTCTACAAGATCGA 57.544 40.909 0.00 0.00 33.34 3.59
582 590 5.016051 ACATGCACTTCTACAAGATCGAT 57.984 39.130 0.00 0.00 33.34 3.59
583 591 6.149129 ACATGCACTTCTACAAGATCGATA 57.851 37.500 0.00 0.00 33.34 2.92
584 592 6.212235 ACATGCACTTCTACAAGATCGATAG 58.788 40.000 0.00 0.00 33.34 2.08
587 595 4.907010 GCACTTCTACAAGATCGATAGACG 59.093 45.833 0.00 0.00 39.81 4.18
625 636 0.550914 ACAGCTCCCACCTTTTGTCA 59.449 50.000 0.00 0.00 0.00 3.58
633 644 2.029649 CCCACCTTTTGTCATCTGCTTG 60.030 50.000 0.00 0.00 0.00 4.01
635 646 3.057736 CCACCTTTTGTCATCTGCTTGAG 60.058 47.826 0.00 0.00 0.00 3.02
714 732 6.212388 ACCATGGATTAACTAAACAAATGGCA 59.788 34.615 21.47 0.00 0.00 4.92
727 745 0.251121 AATGGCAATGGGTCACACGA 60.251 50.000 0.00 0.00 31.00 4.35
846 901 1.328680 CGAATCAATCACTCAAGGCGG 59.671 52.381 0.00 0.00 0.00 6.13
848 903 0.911769 ATCAATCACTCAAGGCGGGA 59.088 50.000 0.00 0.00 0.00 5.14
887 942 1.873591 CCATGTCCAGCCGCTATAAAC 59.126 52.381 0.00 0.00 0.00 2.01
891 946 2.093181 TGTCCAGCCGCTATAAACACAT 60.093 45.455 0.00 0.00 0.00 3.21
893 951 3.741344 GTCCAGCCGCTATAAACACATAG 59.259 47.826 0.00 0.00 0.00 2.23
1082 1159 2.683933 GGAGGAAGAGGCCACGGA 60.684 66.667 5.01 0.00 0.00 4.69
1386 1480 0.730834 TTTTGTGTGTGTGTGTGCGC 60.731 50.000 0.00 0.00 0.00 6.09
1429 1524 3.357203 TGCTTTGTTTTGACTGGGTACA 58.643 40.909 0.00 0.00 0.00 2.90
1505 1609 6.773976 TTTCCTAAATTTACAGATGCCTGG 57.226 37.500 0.00 0.00 44.60 4.45
1569 1673 5.905913 ACCCTTAGTGAGCCAATCTAACTAT 59.094 40.000 0.00 0.00 38.31 2.12
1624 2326 4.704965 AGTCGAGCAATATTTTAGTCCCC 58.295 43.478 0.00 0.00 0.00 4.81
1668 2370 8.927675 AAGTATTACCACTTTTACAATCACCA 57.072 30.769 0.00 0.00 35.16 4.17
1691 2393 6.764085 CCAAATGTACTTCAATATGGGACGTA 59.236 38.462 0.00 0.00 0.00 3.57
1715 2417 1.561643 TCCTCAGTCCGAGCTCAAAT 58.438 50.000 15.40 0.00 40.78 2.32
1739 2442 5.851047 AGTTCGGGTAAACAGTAAAATCG 57.149 39.130 0.00 0.00 0.00 3.34
1909 2614 6.708054 TGGAGTGTTGATTTTGTTTGTTTTGT 59.292 30.769 0.00 0.00 0.00 2.83
2073 2786 2.289010 TGCGAGCAGAAGATGACTTTCA 60.289 45.455 0.00 0.00 36.39 2.69
2080 2808 7.489435 CGAGCAGAAGATGACTTTCAGTAAATA 59.511 37.037 0.00 0.00 36.39 1.40
2170 2898 4.615912 GCAACACACATATTGGTGAAGACC 60.616 45.833 9.82 0.00 41.32 3.85
2183 2911 4.597507 TGGTGAAGACCCTACAAGAATCTT 59.402 41.667 0.00 0.00 42.34 2.40
2204 2932 6.981722 TCTTAGAACTTTTGAAGGGCATTTC 58.018 36.000 0.00 0.00 0.00 2.17
2232 2960 5.542779 ACCTTGAACAAGAGTAGATGTGTC 58.457 41.667 14.99 0.00 40.79 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.502142 AATGAGATGCTGCAAGGACA 57.498 45.000 6.36 5.56 36.81 4.02
1 2 4.732938 GCTTAAATGAGATGCTGCAAGGAC 60.733 45.833 6.36 0.00 36.81 3.85
2 3 3.379372 GCTTAAATGAGATGCTGCAAGGA 59.621 43.478 6.36 0.00 40.11 3.36
3 4 3.490419 GGCTTAAATGAGATGCTGCAAGG 60.490 47.826 6.36 0.00 0.00 3.61
4 5 3.129813 TGGCTTAAATGAGATGCTGCAAG 59.870 43.478 6.36 0.00 0.00 4.01
5 6 3.090790 TGGCTTAAATGAGATGCTGCAA 58.909 40.909 6.36 0.00 0.00 4.08
6 7 2.686405 CTGGCTTAAATGAGATGCTGCA 59.314 45.455 4.13 4.13 0.00 4.41
7 8 2.543238 GCTGGCTTAAATGAGATGCTGC 60.543 50.000 0.00 0.00 0.00 5.25
8 9 2.950309 AGCTGGCTTAAATGAGATGCTG 59.050 45.455 0.00 0.00 0.00 4.41
9 10 2.950309 CAGCTGGCTTAAATGAGATGCT 59.050 45.455 5.57 0.00 0.00 3.79
10 11 2.686915 ACAGCTGGCTTAAATGAGATGC 59.313 45.455 19.93 0.00 0.00 3.91
11 12 4.978083 AACAGCTGGCTTAAATGAGATG 57.022 40.909 19.93 0.00 0.00 2.90
12 13 4.768968 ACAAACAGCTGGCTTAAATGAGAT 59.231 37.500 19.93 0.00 0.00 2.75
13 14 4.144297 ACAAACAGCTGGCTTAAATGAGA 58.856 39.130 19.93 0.00 0.00 3.27
14 15 4.510038 ACAAACAGCTGGCTTAAATGAG 57.490 40.909 19.93 0.87 0.00 2.90
15 16 4.458989 CCTACAAACAGCTGGCTTAAATGA 59.541 41.667 19.93 0.00 0.00 2.57
16 17 4.737054 CCTACAAACAGCTGGCTTAAATG 58.263 43.478 19.93 8.17 0.00 2.32
17 18 3.193479 GCCTACAAACAGCTGGCTTAAAT 59.807 43.478 19.93 3.18 40.36 1.40
18 19 2.556622 GCCTACAAACAGCTGGCTTAAA 59.443 45.455 19.93 1.97 40.36 1.52
19 20 2.159382 GCCTACAAACAGCTGGCTTAA 58.841 47.619 19.93 0.00 40.36 1.85
20 21 1.073125 TGCCTACAAACAGCTGGCTTA 59.927 47.619 19.93 2.66 43.57 3.09
21 22 0.178992 TGCCTACAAACAGCTGGCTT 60.179 50.000 19.93 8.13 43.57 4.35
22 23 0.038744 ATGCCTACAAACAGCTGGCT 59.961 50.000 19.93 0.99 43.57 4.75
23 24 0.890683 AATGCCTACAAACAGCTGGC 59.109 50.000 19.93 10.50 43.49 4.85
24 25 1.203052 CCAATGCCTACAAACAGCTGG 59.797 52.381 19.93 2.38 0.00 4.85
25 26 1.403249 GCCAATGCCTACAAACAGCTG 60.403 52.381 13.48 13.48 0.00 4.24
26 27 0.890683 GCCAATGCCTACAAACAGCT 59.109 50.000 0.00 0.00 0.00 4.24
27 28 0.456653 CGCCAATGCCTACAAACAGC 60.457 55.000 0.00 0.00 0.00 4.40
28 29 0.881118 ACGCCAATGCCTACAAACAG 59.119 50.000 0.00 0.00 0.00 3.16
29 30 0.878416 GACGCCAATGCCTACAAACA 59.122 50.000 0.00 0.00 0.00 2.83
30 31 1.130561 GAGACGCCAATGCCTACAAAC 59.869 52.381 0.00 0.00 0.00 2.93
31 32 1.271108 TGAGACGCCAATGCCTACAAA 60.271 47.619 0.00 0.00 0.00 2.83
32 33 0.323302 TGAGACGCCAATGCCTACAA 59.677 50.000 0.00 0.00 0.00 2.41
33 34 0.541392 ATGAGACGCCAATGCCTACA 59.459 50.000 0.00 0.00 0.00 2.74
34 35 1.668419 AATGAGACGCCAATGCCTAC 58.332 50.000 0.00 0.00 0.00 3.18
35 36 2.418368 AAATGAGACGCCAATGCCTA 57.582 45.000 0.00 0.00 0.00 3.93
36 37 2.418368 TAAATGAGACGCCAATGCCT 57.582 45.000 0.00 0.00 0.00 4.75
37 38 2.796032 GCTTAAATGAGACGCCAATGCC 60.796 50.000 0.00 0.00 0.00 4.40
38 39 2.098117 AGCTTAAATGAGACGCCAATGC 59.902 45.455 0.00 0.00 0.00 3.56
39 40 3.127548 ACAGCTTAAATGAGACGCCAATG 59.872 43.478 0.00 0.00 0.00 2.82
40 41 3.347216 ACAGCTTAAATGAGACGCCAAT 58.653 40.909 0.00 0.00 0.00 3.16
41 42 2.778299 ACAGCTTAAATGAGACGCCAA 58.222 42.857 0.00 0.00 0.00 4.52
42 43 2.472695 ACAGCTTAAATGAGACGCCA 57.527 45.000 0.00 0.00 0.00 5.69
129 136 3.126858 GTCAAATCTATGGCGTTCTTGCA 59.873 43.478 0.00 0.00 36.28 4.08
130 137 3.126858 TGTCAAATCTATGGCGTTCTTGC 59.873 43.478 0.00 0.00 0.00 4.01
374 382 9.703892 GATGCAAGAGACTAGACAACATATTAT 57.296 33.333 0.00 0.00 0.00 1.28
375 383 8.695456 TGATGCAAGAGACTAGACAACATATTA 58.305 33.333 0.00 0.00 0.00 0.98
376 384 7.559486 TGATGCAAGAGACTAGACAACATATT 58.441 34.615 0.00 0.00 0.00 1.28
377 385 7.069208 TCTGATGCAAGAGACTAGACAACATAT 59.931 37.037 0.00 0.00 0.00 1.78
378 386 6.378280 TCTGATGCAAGAGACTAGACAACATA 59.622 38.462 0.00 0.00 0.00 2.29
379 387 5.186603 TCTGATGCAAGAGACTAGACAACAT 59.813 40.000 0.00 0.00 0.00 2.71
380 388 4.524328 TCTGATGCAAGAGACTAGACAACA 59.476 41.667 0.00 0.00 0.00 3.33
381 389 5.065704 TCTGATGCAAGAGACTAGACAAC 57.934 43.478 0.00 0.00 0.00 3.32
382 390 5.449725 CGATCTGATGCAAGAGACTAGACAA 60.450 44.000 0.00 0.00 0.00 3.18
383 391 4.036144 CGATCTGATGCAAGAGACTAGACA 59.964 45.833 0.00 0.00 0.00 3.41
384 392 4.274705 TCGATCTGATGCAAGAGACTAGAC 59.725 45.833 0.00 0.00 0.00 2.59
385 393 4.455606 TCGATCTGATGCAAGAGACTAGA 58.544 43.478 0.00 0.00 0.00 2.43
386 394 4.827304 TCGATCTGATGCAAGAGACTAG 57.173 45.455 0.00 0.00 0.00 2.57
387 395 5.781210 AATCGATCTGATGCAAGAGACTA 57.219 39.130 0.00 0.00 37.39 2.59
388 396 4.669206 AATCGATCTGATGCAAGAGACT 57.331 40.909 0.00 0.00 37.39 3.24
389 397 5.731599 AAAATCGATCTGATGCAAGAGAC 57.268 39.130 0.00 0.00 37.39 3.36
409 417 4.141846 TGCTCTAACCAATGCAACCAAAAA 60.142 37.500 0.00 0.00 32.12 1.94
410 418 3.386078 TGCTCTAACCAATGCAACCAAAA 59.614 39.130 0.00 0.00 32.12 2.44
411 419 2.961741 TGCTCTAACCAATGCAACCAAA 59.038 40.909 0.00 0.00 32.12 3.28
412 420 2.591923 TGCTCTAACCAATGCAACCAA 58.408 42.857 0.00 0.00 32.12 3.67
413 421 2.284754 TGCTCTAACCAATGCAACCA 57.715 45.000 0.00 0.00 32.12 3.67
414 422 2.736400 GCATGCTCTAACCAATGCAACC 60.736 50.000 11.37 0.00 38.96 3.77
415 423 2.094597 TGCATGCTCTAACCAATGCAAC 60.095 45.455 20.33 0.00 41.32 4.17
416 424 2.094597 GTGCATGCTCTAACCAATGCAA 60.095 45.455 20.33 0.00 44.98 4.08
417 425 1.473677 GTGCATGCTCTAACCAATGCA 59.526 47.619 20.33 5.13 41.91 3.96
418 426 1.747355 AGTGCATGCTCTAACCAATGC 59.253 47.619 20.22 0.00 35.77 3.56
419 427 3.693085 AGAAGTGCATGCTCTAACCAATG 59.307 43.478 21.70 0.00 0.00 2.82
420 428 3.960571 AGAAGTGCATGCTCTAACCAAT 58.039 40.909 21.70 5.92 0.00 3.16
421 429 3.423539 AGAAGTGCATGCTCTAACCAA 57.576 42.857 21.70 0.00 0.00 3.67
422 430 3.260632 TGTAGAAGTGCATGCTCTAACCA 59.739 43.478 21.70 13.20 0.00 3.67
423 431 3.861840 TGTAGAAGTGCATGCTCTAACC 58.138 45.455 21.70 13.81 0.00 2.85
424 432 4.272018 CCATGTAGAAGTGCATGCTCTAAC 59.728 45.833 21.70 18.70 43.45 2.34
425 433 4.080919 ACCATGTAGAAGTGCATGCTCTAA 60.081 41.667 21.70 8.68 43.45 2.10
426 434 3.452264 ACCATGTAGAAGTGCATGCTCTA 59.548 43.478 21.70 15.62 43.45 2.43
427 435 2.238144 ACCATGTAGAAGTGCATGCTCT 59.762 45.455 20.33 18.23 43.45 4.09
428 436 2.636830 ACCATGTAGAAGTGCATGCTC 58.363 47.619 20.33 15.94 43.45 4.26
429 437 2.795231 ACCATGTAGAAGTGCATGCT 57.205 45.000 20.33 0.00 43.45 3.79
430 438 4.129380 TGATACCATGTAGAAGTGCATGC 58.871 43.478 11.82 11.82 43.45 4.06
431 439 6.682423 TTTGATACCATGTAGAAGTGCATG 57.318 37.500 0.00 0.00 44.17 4.06
432 440 5.297776 GCTTTGATACCATGTAGAAGTGCAT 59.702 40.000 0.00 0.00 0.00 3.96
433 441 4.635765 GCTTTGATACCATGTAGAAGTGCA 59.364 41.667 0.00 0.00 0.00 4.57
434 442 4.878397 AGCTTTGATACCATGTAGAAGTGC 59.122 41.667 0.00 0.00 0.00 4.40
435 443 7.981789 TCTTAGCTTTGATACCATGTAGAAGTG 59.018 37.037 0.00 0.00 0.00 3.16
436 444 8.079211 TCTTAGCTTTGATACCATGTAGAAGT 57.921 34.615 0.00 0.00 0.00 3.01
437 445 7.655328 CCTCTTAGCTTTGATACCATGTAGAAG 59.345 40.741 0.00 0.00 0.00 2.85
438 446 7.125811 ACCTCTTAGCTTTGATACCATGTAGAA 59.874 37.037 0.00 0.00 0.00 2.10
439 447 6.611642 ACCTCTTAGCTTTGATACCATGTAGA 59.388 38.462 0.00 0.00 0.00 2.59
440 448 6.821388 ACCTCTTAGCTTTGATACCATGTAG 58.179 40.000 0.00 0.00 0.00 2.74
441 449 6.808321 ACCTCTTAGCTTTGATACCATGTA 57.192 37.500 0.00 0.00 0.00 2.29
442 450 5.700402 ACCTCTTAGCTTTGATACCATGT 57.300 39.130 0.00 0.00 0.00 3.21
443 451 7.121168 TCAAAACCTCTTAGCTTTGATACCATG 59.879 37.037 0.00 0.00 33.90 3.66
444 452 7.175104 TCAAAACCTCTTAGCTTTGATACCAT 58.825 34.615 0.00 0.00 33.90 3.55
445 453 6.539173 TCAAAACCTCTTAGCTTTGATACCA 58.461 36.000 0.00 0.00 33.90 3.25
446 454 6.655425 ACTCAAAACCTCTTAGCTTTGATACC 59.345 38.462 0.00 0.00 37.22 2.73
447 455 7.674471 ACTCAAAACCTCTTAGCTTTGATAC 57.326 36.000 0.00 0.00 37.22 2.24
448 456 7.936847 TGAACTCAAAACCTCTTAGCTTTGATA 59.063 33.333 0.00 0.00 37.22 2.15
449 457 6.772716 TGAACTCAAAACCTCTTAGCTTTGAT 59.227 34.615 0.00 0.00 37.22 2.57
450 458 6.119536 TGAACTCAAAACCTCTTAGCTTTGA 58.880 36.000 0.00 0.00 36.59 2.69
451 459 6.377327 TGAACTCAAAACCTCTTAGCTTTG 57.623 37.500 0.00 0.00 0.00 2.77
452 460 6.828785 TCTTGAACTCAAAACCTCTTAGCTTT 59.171 34.615 0.00 0.00 35.15 3.51
453 461 6.261158 GTCTTGAACTCAAAACCTCTTAGCTT 59.739 38.462 0.00 0.00 35.15 3.74
454 462 5.760743 GTCTTGAACTCAAAACCTCTTAGCT 59.239 40.000 0.00 0.00 35.15 3.32
455 463 5.049336 GGTCTTGAACTCAAAACCTCTTAGC 60.049 44.000 7.56 0.00 42.27 3.09
456 464 5.470437 GGGTCTTGAACTCAAAACCTCTTAG 59.530 44.000 13.33 0.00 44.36 2.18
457 465 5.374071 GGGTCTTGAACTCAAAACCTCTTA 58.626 41.667 13.33 0.00 44.36 2.10
458 466 4.207955 GGGTCTTGAACTCAAAACCTCTT 58.792 43.478 13.33 0.00 44.36 2.85
459 467 3.744530 CGGGTCTTGAACTCAAAACCTCT 60.745 47.826 13.33 0.00 44.36 3.69
460 468 2.548480 CGGGTCTTGAACTCAAAACCTC 59.452 50.000 13.33 4.72 44.36 3.85
461 469 2.572290 CGGGTCTTGAACTCAAAACCT 58.428 47.619 13.33 0.00 44.36 3.50
462 470 1.607148 CCGGGTCTTGAACTCAAAACC 59.393 52.381 6.42 6.42 44.24 3.27
463 471 1.001706 GCCGGGTCTTGAACTCAAAAC 60.002 52.381 2.18 0.00 35.15 2.43
464 472 1.133915 AGCCGGGTCTTGAACTCAAAA 60.134 47.619 0.00 0.00 35.15 2.44
465 473 0.472471 AGCCGGGTCTTGAACTCAAA 59.528 50.000 0.00 0.00 35.15 2.69
466 474 0.250295 CAGCCGGGTCTTGAACTCAA 60.250 55.000 1.27 0.00 0.00 3.02
467 475 1.118965 TCAGCCGGGTCTTGAACTCA 61.119 55.000 1.27 0.00 0.00 3.41
468 476 0.670854 GTCAGCCGGGTCTTGAACTC 60.671 60.000 1.27 0.00 0.00 3.01
469 477 1.371558 GTCAGCCGGGTCTTGAACT 59.628 57.895 1.27 0.00 0.00 3.01
470 478 2.027625 CGTCAGCCGGGTCTTGAAC 61.028 63.158 1.27 0.00 0.00 3.18
471 479 2.154798 CTCGTCAGCCGGGTCTTGAA 62.155 60.000 1.27 0.00 37.11 2.69
472 480 2.599281 TCGTCAGCCGGGTCTTGA 60.599 61.111 1.27 0.00 37.11 3.02
473 481 2.125912 CTCGTCAGCCGGGTCTTG 60.126 66.667 1.27 0.00 37.11 3.02
474 482 3.382832 CCTCGTCAGCCGGGTCTT 61.383 66.667 1.27 0.00 34.27 3.01
475 483 3.881019 TTCCTCGTCAGCCGGGTCT 62.881 63.158 1.27 0.00 34.27 3.85
476 484 3.358076 CTTCCTCGTCAGCCGGGTC 62.358 68.421 1.27 0.00 34.27 4.46
477 485 2.776370 TACTTCCTCGTCAGCCGGGT 62.776 60.000 0.00 0.00 34.27 5.28
478 486 1.392710 ATACTTCCTCGTCAGCCGGG 61.393 60.000 2.18 0.00 37.11 5.73
479 487 0.460311 AATACTTCCTCGTCAGCCGG 59.540 55.000 0.00 0.00 37.11 6.13
480 488 1.134367 TCAATACTTCCTCGTCAGCCG 59.866 52.381 0.00 0.00 38.13 5.52
481 489 2.094182 TGTCAATACTTCCTCGTCAGCC 60.094 50.000 0.00 0.00 0.00 4.85
482 490 3.232213 TGTCAATACTTCCTCGTCAGC 57.768 47.619 0.00 0.00 0.00 4.26
483 491 9.133627 CATTATATGTCAATACTTCCTCGTCAG 57.866 37.037 0.00 0.00 0.00 3.51
484 492 8.638873 ACATTATATGTCAATACTTCCTCGTCA 58.361 33.333 0.00 0.00 39.92 4.35
485 493 8.916654 CACATTATATGTCAATACTTCCTCGTC 58.083 37.037 0.00 0.00 42.70 4.20
486 494 8.421784 ACACATTATATGTCAATACTTCCTCGT 58.578 33.333 0.00 0.00 42.70 4.18
487 495 8.818141 ACACATTATATGTCAATACTTCCTCG 57.182 34.615 0.00 0.00 42.70 4.63
489 497 8.840321 GCAACACATTATATGTCAATACTTCCT 58.160 33.333 0.00 0.00 42.70 3.36
490 498 8.076178 GGCAACACATTATATGTCAATACTTCC 58.924 37.037 0.00 0.00 42.70 3.46
491 499 8.840321 AGGCAACACATTATATGTCAATACTTC 58.160 33.333 0.00 0.00 42.70 3.01
492 500 8.752005 AGGCAACACATTATATGTCAATACTT 57.248 30.769 0.00 0.00 42.70 2.24
493 501 9.494271 CTAGGCAACACATTATATGTCAATACT 57.506 33.333 0.00 0.00 42.70 2.12
494 502 9.273016 ACTAGGCAACACATTATATGTCAATAC 57.727 33.333 0.00 0.00 42.70 1.89
495 503 9.489084 GACTAGGCAACACATTATATGTCAATA 57.511 33.333 0.00 0.00 42.70 1.90
496 504 8.213679 AGACTAGGCAACACATTATATGTCAAT 58.786 33.333 0.00 0.00 42.70 2.57
497 505 7.564793 AGACTAGGCAACACATTATATGTCAA 58.435 34.615 0.00 0.00 42.70 3.18
498 506 7.124573 AGACTAGGCAACACATTATATGTCA 57.875 36.000 0.00 0.00 42.70 3.58
499 507 8.438676 AAAGACTAGGCAACACATTATATGTC 57.561 34.615 0.00 0.00 42.70 3.06
500 508 8.807948 AAAAGACTAGGCAACACATTATATGT 57.192 30.769 0.00 0.00 46.22 2.29
501 509 9.722056 GAAAAAGACTAGGCAACACATTATATG 57.278 33.333 0.00 0.00 41.41 1.78
502 510 9.461312 TGAAAAAGACTAGGCAACACATTATAT 57.539 29.630 0.00 0.00 41.41 0.86
503 511 8.856153 TGAAAAAGACTAGGCAACACATTATA 57.144 30.769 0.00 0.00 41.41 0.98
504 512 7.759489 TGAAAAAGACTAGGCAACACATTAT 57.241 32.000 0.00 0.00 41.41 1.28
505 513 7.446931 TGATGAAAAAGACTAGGCAACACATTA 59.553 33.333 0.00 0.00 41.41 1.90
506 514 6.265196 TGATGAAAAAGACTAGGCAACACATT 59.735 34.615 0.00 0.00 41.41 2.71
507 515 5.769662 TGATGAAAAAGACTAGGCAACACAT 59.230 36.000 0.00 0.00 41.41 3.21
508 516 5.129634 TGATGAAAAAGACTAGGCAACACA 58.870 37.500 0.00 0.00 41.41 3.72
509 517 5.470098 TCTGATGAAAAAGACTAGGCAACAC 59.530 40.000 0.00 0.00 41.41 3.32
510 518 5.620206 TCTGATGAAAAAGACTAGGCAACA 58.380 37.500 0.00 0.00 41.41 3.33
511 519 6.456181 CGATCTGATGAAAAAGACTAGGCAAC 60.456 42.308 0.00 0.00 0.00 4.17
512 520 5.582269 CGATCTGATGAAAAAGACTAGGCAA 59.418 40.000 0.00 0.00 0.00 4.52
513 521 5.111989 CGATCTGATGAAAAAGACTAGGCA 58.888 41.667 0.00 0.00 0.00 4.75
514 522 4.509600 CCGATCTGATGAAAAAGACTAGGC 59.490 45.833 0.00 0.00 0.00 3.93
515 523 5.665459 ACCGATCTGATGAAAAAGACTAGG 58.335 41.667 0.00 0.00 0.00 3.02
516 524 6.568869 AGACCGATCTGATGAAAAAGACTAG 58.431 40.000 0.00 0.00 32.29 2.57
517 525 6.531503 AGACCGATCTGATGAAAAAGACTA 57.468 37.500 0.00 0.00 32.29 2.59
518 526 5.413309 AGACCGATCTGATGAAAAAGACT 57.587 39.130 0.00 0.00 32.29 3.24
519 527 6.487689 AAAGACCGATCTGATGAAAAAGAC 57.512 37.500 0.00 0.00 34.48 3.01
520 528 6.072508 CCAAAAGACCGATCTGATGAAAAAGA 60.073 38.462 0.00 0.00 34.48 2.52
521 529 6.088824 CCAAAAGACCGATCTGATGAAAAAG 58.911 40.000 0.00 0.00 34.48 2.27
522 530 5.534654 ACCAAAAGACCGATCTGATGAAAAA 59.465 36.000 0.00 0.00 34.48 1.94
523 531 5.070001 ACCAAAAGACCGATCTGATGAAAA 58.930 37.500 0.00 0.00 34.48 2.29
524 532 4.651778 ACCAAAAGACCGATCTGATGAAA 58.348 39.130 0.00 0.00 34.48 2.69
525 533 4.286297 ACCAAAAGACCGATCTGATGAA 57.714 40.909 0.00 0.00 34.48 2.57
526 534 3.981071 ACCAAAAGACCGATCTGATGA 57.019 42.857 0.00 0.00 34.48 2.92
527 535 3.426695 GCAACCAAAAGACCGATCTGATG 60.427 47.826 0.00 0.00 34.48 3.07
528 536 2.749621 GCAACCAAAAGACCGATCTGAT 59.250 45.455 0.00 0.00 34.48 2.90
529 537 2.151202 GCAACCAAAAGACCGATCTGA 58.849 47.619 0.00 0.00 34.48 3.27
530 538 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
531 539 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
532 540 3.575965 AATGCAACCAAAAGACCGATC 57.424 42.857 0.00 0.00 0.00 3.69
533 541 3.119495 GCTAATGCAACCAAAAGACCGAT 60.119 43.478 0.00 0.00 39.41 4.18
534 542 2.227865 GCTAATGCAACCAAAAGACCGA 59.772 45.455 0.00 0.00 39.41 4.69
535 543 2.228822 AGCTAATGCAACCAAAAGACCG 59.771 45.455 0.00 0.00 42.74 4.79
536 544 3.942130 AGCTAATGCAACCAAAAGACC 57.058 42.857 0.00 0.00 42.74 3.85
537 545 5.880054 TCTAGCTAATGCAACCAAAAGAC 57.120 39.130 0.00 0.00 42.74 3.01
538 546 5.767665 TGTTCTAGCTAATGCAACCAAAAGA 59.232 36.000 0.00 0.00 42.74 2.52
539 547 6.012658 TGTTCTAGCTAATGCAACCAAAAG 57.987 37.500 0.00 0.00 42.74 2.27
540 548 6.389091 CATGTTCTAGCTAATGCAACCAAAA 58.611 36.000 0.00 0.00 42.74 2.44
541 549 5.622007 GCATGTTCTAGCTAATGCAACCAAA 60.622 40.000 18.86 0.00 43.84 3.28
542 550 4.142403 GCATGTTCTAGCTAATGCAACCAA 60.142 41.667 18.86 0.00 43.84 3.67
543 551 3.378112 GCATGTTCTAGCTAATGCAACCA 59.622 43.478 18.86 0.74 43.84 3.67
544 552 3.957468 GCATGTTCTAGCTAATGCAACC 58.043 45.455 18.86 1.41 43.84 3.77
548 556 4.574013 AGAAGTGCATGTTCTAGCTAATGC 59.426 41.667 17.52 17.52 44.49 3.56
549 557 6.758416 TGTAGAAGTGCATGTTCTAGCTAATG 59.242 38.462 17.44 0.00 37.22 1.90
550 558 6.878317 TGTAGAAGTGCATGTTCTAGCTAAT 58.122 36.000 17.44 0.00 37.22 1.73
551 559 6.280855 TGTAGAAGTGCATGTTCTAGCTAA 57.719 37.500 17.44 5.88 37.22 3.09
552 560 5.914898 TGTAGAAGTGCATGTTCTAGCTA 57.085 39.130 17.44 0.00 37.22 3.32
553 561 4.808414 TGTAGAAGTGCATGTTCTAGCT 57.192 40.909 17.44 0.00 37.22 3.32
554 562 5.171476 TCTTGTAGAAGTGCATGTTCTAGC 58.829 41.667 17.44 13.66 37.22 3.42
555 563 6.198029 CGATCTTGTAGAAGTGCATGTTCTAG 59.802 42.308 17.44 10.83 37.22 2.43
556 564 6.036470 CGATCTTGTAGAAGTGCATGTTCTA 58.964 40.000 14.43 14.43 35.78 2.10
557 565 4.867047 CGATCTTGTAGAAGTGCATGTTCT 59.133 41.667 16.08 16.08 37.94 3.01
558 566 4.864806 TCGATCTTGTAGAAGTGCATGTTC 59.135 41.667 0.00 0.00 0.00 3.18
559 567 4.820897 TCGATCTTGTAGAAGTGCATGTT 58.179 39.130 0.00 0.00 0.00 2.71
560 568 4.456280 TCGATCTTGTAGAAGTGCATGT 57.544 40.909 0.00 0.00 0.00 3.21
561 569 6.362016 GTCTATCGATCTTGTAGAAGTGCATG 59.638 42.308 0.00 0.00 0.00 4.06
562 570 6.442952 GTCTATCGATCTTGTAGAAGTGCAT 58.557 40.000 0.00 0.00 0.00 3.96
563 571 5.504173 CGTCTATCGATCTTGTAGAAGTGCA 60.504 44.000 0.00 0.00 42.86 4.57
564 572 4.907010 CGTCTATCGATCTTGTAGAAGTGC 59.093 45.833 0.00 0.00 42.86 4.40
565 573 5.007823 ACCGTCTATCGATCTTGTAGAAGTG 59.992 44.000 0.00 0.00 42.86 3.16
566 574 5.124645 ACCGTCTATCGATCTTGTAGAAGT 58.875 41.667 0.00 0.00 42.86 3.01
567 575 5.676532 ACCGTCTATCGATCTTGTAGAAG 57.323 43.478 0.00 0.91 42.86 2.85
568 576 6.932960 TGATACCGTCTATCGATCTTGTAGAA 59.067 38.462 0.00 0.00 42.86 2.10
569 577 6.461640 TGATACCGTCTATCGATCTTGTAGA 58.538 40.000 0.00 0.00 42.86 2.59
570 578 6.723131 TGATACCGTCTATCGATCTTGTAG 57.277 41.667 0.00 0.00 42.86 2.74
571 579 6.035758 CGATGATACCGTCTATCGATCTTGTA 59.964 42.308 0.00 0.00 42.86 2.41
572 580 5.163844 CGATGATACCGTCTATCGATCTTGT 60.164 44.000 0.00 0.00 42.86 3.16
573 581 5.063564 TCGATGATACCGTCTATCGATCTTG 59.936 44.000 0.00 0.00 39.57 3.02
574 582 5.063691 GTCGATGATACCGTCTATCGATCTT 59.936 44.000 0.00 0.00 42.75 2.40
575 583 4.567558 GTCGATGATACCGTCTATCGATCT 59.432 45.833 0.00 0.00 42.75 2.75
576 584 4.260294 GGTCGATGATACCGTCTATCGATC 60.260 50.000 0.00 7.13 42.75 3.69
577 585 3.622163 GGTCGATGATACCGTCTATCGAT 59.378 47.826 2.16 2.16 42.75 3.59
578 586 2.998670 GGTCGATGATACCGTCTATCGA 59.001 50.000 0.00 0.00 40.82 3.59
579 587 2.740447 TGGTCGATGATACCGTCTATCG 59.260 50.000 0.00 0.00 40.08 2.92
580 588 4.215827 ACTTGGTCGATGATACCGTCTATC 59.784 45.833 0.00 0.00 40.08 2.08
581 589 4.142790 ACTTGGTCGATGATACCGTCTAT 58.857 43.478 0.00 0.00 40.08 1.98
582 590 3.548770 ACTTGGTCGATGATACCGTCTA 58.451 45.455 0.00 0.00 40.08 2.59
583 591 2.358267 GACTTGGTCGATGATACCGTCT 59.642 50.000 0.00 0.00 40.08 4.18
584 592 2.098607 TGACTTGGTCGATGATACCGTC 59.901 50.000 0.00 0.00 40.08 4.79
587 595 3.857052 TGTTGACTTGGTCGATGATACC 58.143 45.455 0.00 0.00 34.95 2.73
625 636 3.484407 AGCAAACAGAACTCAAGCAGAT 58.516 40.909 0.00 0.00 0.00 2.90
633 644 1.867233 TCGAGCAAGCAAACAGAACTC 59.133 47.619 0.00 0.00 0.00 3.01
635 646 1.599542 ACTCGAGCAAGCAAACAGAAC 59.400 47.619 13.61 0.00 0.00 3.01
727 745 2.752238 CTCGAGCCTCGACCAGGT 60.752 66.667 13.77 0.00 44.82 4.00
730 748 2.438614 CTCCTCGAGCCTCGACCA 60.439 66.667 13.77 1.23 44.82 4.02
734 752 4.200283 GCCACTCCTCGAGCCTCG 62.200 72.222 8.05 8.05 42.10 4.63
735 753 3.844090 GGCCACTCCTCGAGCCTC 61.844 72.222 6.99 0.00 42.34 4.70
736 754 4.704103 TGGCCACTCCTCGAGCCT 62.704 66.667 6.99 0.00 45.94 4.58
737 755 4.154347 CTGGCCACTCCTCGAGCC 62.154 72.222 6.99 5.43 45.96 4.70
738 756 3.363844 GACTGGCCACTCCTCGAGC 62.364 68.421 6.99 0.00 32.04 5.03
739 757 1.536073 TTGACTGGCCACTCCTCGAG 61.536 60.000 0.00 5.13 35.26 4.04
861 916 4.052518 GGCTGGACATGGCCCACT 62.053 66.667 17.19 0.00 42.30 4.00
887 942 0.960364 GGTGTGGGTGTGGCTATGTG 60.960 60.000 0.00 0.00 0.00 3.21
891 946 1.378378 CATGGTGTGGGTGTGGCTA 59.622 57.895 0.00 0.00 0.00 3.93
893 951 2.203480 ACATGGTGTGGGTGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
950 1015 0.924090 CTAAGCTTAGCTCCGTTGCG 59.076 55.000 20.13 0.00 38.25 4.85
972 1039 3.600448 ATCTCTCTTGCTCTAGCCTCT 57.400 47.619 0.00 0.00 41.18 3.69
973 1040 4.370917 CAAATCTCTCTTGCTCTAGCCTC 58.629 47.826 0.00 0.00 41.18 4.70
974 1041 3.432046 GCAAATCTCTCTTGCTCTAGCCT 60.432 47.826 0.00 0.00 44.66 4.58
975 1042 2.871633 GCAAATCTCTCTTGCTCTAGCC 59.128 50.000 0.00 0.00 44.66 3.93
976 1043 2.539274 CGCAAATCTCTCTTGCTCTAGC 59.461 50.000 6.04 0.00 45.64 3.42
977 1044 2.539274 GCGCAAATCTCTCTTGCTCTAG 59.461 50.000 0.30 0.00 45.64 2.43
978 1045 2.544685 GCGCAAATCTCTCTTGCTCTA 58.455 47.619 0.30 0.00 45.64 2.43
1528 1632 4.976540 AGGGTAAAAGTACTGCTCAACT 57.023 40.909 0.00 0.00 0.00 3.16
1540 1644 5.501156 AGATTGGCTCACTAAGGGTAAAAG 58.499 41.667 0.00 0.00 0.00 2.27
1569 1673 3.709974 CCACCGGTGGTAAGAACAA 57.290 52.632 40.44 0.00 45.53 2.83
1661 2363 7.838696 TCCCATATTGAAGTACATTTGGTGATT 59.161 33.333 0.00 0.00 0.00 2.57
1668 2370 7.494625 CACTACGTCCCATATTGAAGTACATTT 59.505 37.037 0.00 0.00 0.00 2.32
1691 2393 0.540830 AGCTCGGACTGAGGAACACT 60.541 55.000 13.25 0.00 45.38 3.55
1715 2417 7.151308 TCGATTTTACTGTTTACCCGAACTTA 58.849 34.615 0.00 0.00 0.00 2.24
1860 2564 9.224058 CCAAAATGCTTTGAAAATAACACTTTG 57.776 29.630 0.22 0.00 44.03 2.77
1909 2614 4.632538 ATGACATTCGTGATAGTCGTGA 57.367 40.909 0.00 0.00 33.83 4.35
2073 2786 4.114794 GACCGGTGTGCGTTATATTTACT 58.885 43.478 14.63 0.00 0.00 2.24
2080 2808 0.869730 GTTTGACCGGTGTGCGTTAT 59.130 50.000 14.63 0.00 0.00 1.89
2084 2812 1.136085 CATTAGTTTGACCGGTGTGCG 60.136 52.381 14.63 0.00 0.00 5.34
2183 2911 4.217550 CCGAAATGCCCTTCAAAAGTTCTA 59.782 41.667 0.00 0.00 0.00 2.10
2204 2932 2.833631 ACTCTTGTTCAAGGTACCCG 57.166 50.000 8.74 0.00 0.00 5.28
2232 2960 6.738114 TCAAAGCCTCATGTTTAAAAGACAG 58.262 36.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.