Multiple sequence alignment - TraesCS5A01G464900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G464900 chr5A 100.000 3683 0 0 1 3683 644119610 644123292 0.000000e+00 6802
1 TraesCS5A01G464900 chr5B 86.505 2512 162 74 677 3064 649021813 649024271 0.000000e+00 2597
2 TraesCS5A01G464900 chr5B 85.542 498 33 14 3217 3683 649024348 649024837 5.530000e-133 484
3 TraesCS5A01G464900 chr5D 87.520 1875 103 53 597 2377 516785407 516787244 0.000000e+00 2045
4 TraesCS5A01G464900 chr5D 84.869 1302 87 43 2453 3683 516787376 516788638 0.000000e+00 1212
5 TraesCS5A01G464900 chr5D 90.758 541 35 6 68 599 516784804 516785338 0.000000e+00 708
6 TraesCS5A01G464900 chr7D 86.154 195 27 0 2487 2681 552285452 552285258 1.040000e-50 211
7 TraesCS5A01G464900 chr7B 86.154 195 27 0 2487 2681 597311080 597310886 1.040000e-50 211
8 TraesCS5A01G464900 chr7A 85.128 195 29 0 2487 2681 637948768 637948574 2.240000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G464900 chr5A 644119610 644123292 3682 False 6802.000000 6802 100.000000 1 3683 1 chr5A.!!$F1 3682
1 TraesCS5A01G464900 chr5B 649021813 649024837 3024 False 1540.500000 2597 86.023500 677 3683 2 chr5B.!!$F1 3006
2 TraesCS5A01G464900 chr5D 516784804 516788638 3834 False 1321.666667 2045 87.715667 68 3683 3 chr5D.!!$F1 3615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.173708 GTTAGGCCTCCGTCTGACTG 59.826 60.0 9.68 0.0 0.00 3.51 F
583 593 0.193827 AATAGGGACCTAGAGGGGGC 59.806 60.0 4.20 0.0 40.27 5.80 F
2268 2478 0.171903 ATCATGCAACTTTCTGCGCC 59.828 50.0 4.18 0.0 45.74 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1841 1.743252 CTTCTTGAGCCAGGCGGAC 60.743 63.158 5.55 2.45 0.0 4.79 R
2342 2554 0.107703 CAAAGGCCGCCACTCTCATA 60.108 55.000 13.15 0.00 0.0 2.15 R
3110 3433 0.250858 TGATCCTGGGTGTGTGCAAG 60.251 55.000 0.00 0.00 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.560146 CCAAAAGAGGTCTAGGGGTCC 59.440 57.143 0.00 0.00 0.00 4.46
21 22 2.552367 CAAAAGAGGTCTAGGGGTCCT 58.448 52.381 0.00 0.00 37.71 3.85
22 23 2.502130 CAAAAGAGGTCTAGGGGTCCTC 59.498 54.545 12.75 12.75 45.56 3.71
23 24 0.637743 AAGAGGTCTAGGGGTCCTCC 59.362 60.000 15.30 0.00 46.15 4.30
41 42 4.499116 CCCCCTCCTCCCGTCCAT 62.499 72.222 0.00 0.00 0.00 3.41
42 43 2.844839 CCCCTCCTCCCGTCCATC 60.845 72.222 0.00 0.00 0.00 3.51
43 44 2.844839 CCCTCCTCCCGTCCATCC 60.845 72.222 0.00 0.00 0.00 3.51
44 45 2.283809 CCTCCTCCCGTCCATCCT 59.716 66.667 0.00 0.00 0.00 3.24
45 46 1.834822 CCTCCTCCCGTCCATCCTC 60.835 68.421 0.00 0.00 0.00 3.71
46 47 1.834822 CTCCTCCCGTCCATCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
47 48 2.283809 CCTCCCGTCCATCCTCCT 59.716 66.667 0.00 0.00 0.00 3.69
48 49 1.383248 CCTCCCGTCCATCCTCCTT 60.383 63.158 0.00 0.00 0.00 3.36
49 50 1.403687 CCTCCCGTCCATCCTCCTTC 61.404 65.000 0.00 0.00 0.00 3.46
50 51 1.739338 CTCCCGTCCATCCTCCTTCG 61.739 65.000 0.00 0.00 0.00 3.79
51 52 2.107141 CCGTCCATCCTCCTTCGC 59.893 66.667 0.00 0.00 0.00 4.70
52 53 2.107141 CGTCCATCCTCCTTCGCC 59.893 66.667 0.00 0.00 0.00 5.54
53 54 2.721167 CGTCCATCCTCCTTCGCCA 61.721 63.158 0.00 0.00 0.00 5.69
54 55 1.602237 GTCCATCCTCCTTCGCCAA 59.398 57.895 0.00 0.00 0.00 4.52
55 56 0.181350 GTCCATCCTCCTTCGCCAAT 59.819 55.000 0.00 0.00 0.00 3.16
56 57 1.416401 GTCCATCCTCCTTCGCCAATA 59.584 52.381 0.00 0.00 0.00 1.90
57 58 1.694150 TCCATCCTCCTTCGCCAATAG 59.306 52.381 0.00 0.00 0.00 1.73
58 59 1.694150 CCATCCTCCTTCGCCAATAGA 59.306 52.381 0.00 0.00 0.00 1.98
59 60 2.304180 CCATCCTCCTTCGCCAATAGAT 59.696 50.000 0.00 0.00 0.00 1.98
60 61 3.594134 CATCCTCCTTCGCCAATAGATC 58.406 50.000 0.00 0.00 0.00 2.75
61 62 1.613925 TCCTCCTTCGCCAATAGATCG 59.386 52.381 0.00 0.00 0.00 3.69
62 63 1.341531 CCTCCTTCGCCAATAGATCGT 59.658 52.381 0.00 0.00 0.00 3.73
63 64 2.608261 CCTCCTTCGCCAATAGATCGTC 60.608 54.545 0.00 0.00 0.00 4.20
64 65 1.001706 TCCTTCGCCAATAGATCGTCG 60.002 52.381 0.00 0.00 0.00 5.12
65 66 1.001706 CCTTCGCCAATAGATCGTCGA 60.002 52.381 0.00 0.00 0.00 4.20
66 67 2.351835 CCTTCGCCAATAGATCGTCGAT 60.352 50.000 7.63 7.63 0.00 3.59
76 77 1.445716 GATCGTCGATCGGTGGGAGT 61.446 60.000 18.82 0.00 40.32 3.85
91 92 2.041350 TGGGAGTCGTAGTTTCCTCTCT 59.959 50.000 0.00 0.00 33.14 3.10
115 116 1.540580 GGCATTAGTTAGGCCTCCGTC 60.541 57.143 9.68 0.00 44.32 4.79
121 122 0.173708 GTTAGGCCTCCGTCTGACTG 59.826 60.000 9.68 0.00 0.00 3.51
144 145 0.525668 CGAGACTATGGTGTCACCGC 60.526 60.000 17.27 4.32 42.58 5.68
146 147 0.532573 AGACTATGGTGTCACCGCAG 59.467 55.000 17.27 17.20 42.58 5.18
158 159 4.776322 CCGCAGGCGTGGAATCCA 62.776 66.667 13.07 0.00 46.55 3.41
183 193 1.084370 CCTCGTTCCGGTGATGCTTC 61.084 60.000 0.00 0.00 0.00 3.86
191 201 2.167693 TCCGGTGATGCTTCTTCGTATT 59.832 45.455 0.00 0.00 0.00 1.89
194 204 2.939103 GGTGATGCTTCTTCGTATTGCT 59.061 45.455 0.88 0.00 0.00 3.91
201 211 3.385577 CTTCTTCGTATTGCTAGGAGGC 58.614 50.000 0.00 0.00 0.00 4.70
230 240 5.104735 GGAAGATGGTGTGTCCTAAGATCTT 60.105 44.000 13.56 13.56 37.69 2.40
231 241 6.098409 GGAAGATGGTGTGTCCTAAGATCTTA 59.902 42.308 14.42 14.42 36.21 2.10
238 248 6.697892 GGTGTGTCCTAAGATCTTATTCTTCG 59.302 42.308 15.47 3.23 37.20 3.79
272 282 1.757682 TTTGCAGGTTTGTCTCGGTT 58.242 45.000 0.00 0.00 0.00 4.44
279 289 1.076332 GTTTGTCTCGGTTGCGCTAT 58.924 50.000 9.73 0.00 0.00 2.97
285 295 2.511373 CGGTTGCGCTATCCTGCA 60.511 61.111 9.73 0.00 39.81 4.41
291 301 2.243264 GCGCTATCCTGCAGAGCAC 61.243 63.158 21.67 11.39 38.53 4.40
319 329 2.292569 TGTCTATACGTCTTGATCCGCC 59.707 50.000 0.00 0.00 0.00 6.13
356 366 1.675116 GGCGAAGGTTAACCAGACTCC 60.675 57.143 26.26 15.95 38.89 3.85
391 401 5.028549 AGTGTGTGAGATTTGTGTTCTCT 57.971 39.130 2.73 0.00 40.26 3.10
403 413 0.539669 TGTTCTCTGGCTCCGTCTGA 60.540 55.000 0.00 0.00 0.00 3.27
445 455 3.308046 GCCCTCTCAACCATCTTCTTCTT 60.308 47.826 0.00 0.00 0.00 2.52
466 476 4.349663 TCATAGCGGCAATTTGTTACAC 57.650 40.909 1.45 0.00 0.00 2.90
477 487 0.382515 TTGTTACACAAACTGCGGCC 59.617 50.000 0.00 0.00 38.99 6.13
512 522 4.847365 AATCAACATCGATGACTTGTCG 57.153 40.909 31.33 10.85 40.30 4.35
533 543 3.311596 CGGGCGCTACTTTTATAAGCTTT 59.688 43.478 7.64 0.00 34.60 3.51
574 584 1.694696 GCTCCGATGAAATAGGGACCT 59.305 52.381 0.00 0.00 39.86 3.85
576 586 3.056465 GCTCCGATGAAATAGGGACCTAG 60.056 52.174 4.20 0.00 39.86 3.02
580 590 3.511934 CGATGAAATAGGGACCTAGAGGG 59.488 52.174 4.20 0.00 40.27 4.30
583 593 0.193827 AATAGGGACCTAGAGGGGGC 59.806 60.000 4.20 0.00 40.27 5.80
588 598 2.042930 ACCTAGAGGGGGCAAGGG 59.957 66.667 0.00 0.00 40.27 3.95
667 750 3.726557 TCGGACTGAGGGAGTACTTTA 57.273 47.619 0.00 0.00 32.49 1.85
669 752 5.378230 TCGGACTGAGGGAGTACTTTATA 57.622 43.478 0.00 0.00 32.49 0.98
670 753 5.374921 TCGGACTGAGGGAGTACTTTATAG 58.625 45.833 0.00 0.00 32.49 1.31
671 754 5.104193 TCGGACTGAGGGAGTACTTTATAGT 60.104 44.000 0.00 0.00 32.49 2.12
672 755 5.593502 CGGACTGAGGGAGTACTTTATAGTT 59.406 44.000 0.00 0.00 32.49 2.24
673 756 6.096564 CGGACTGAGGGAGTACTTTATAGTTT 59.903 42.308 0.00 0.00 32.49 2.66
674 757 7.284034 CGGACTGAGGGAGTACTTTATAGTTTA 59.716 40.741 0.00 0.00 32.49 2.01
675 758 8.412456 GGACTGAGGGAGTACTTTATAGTTTAC 58.588 40.741 0.00 0.00 33.83 2.01
695 778 9.841295 AGTTTACATACTGTCTTTGGACTTTTA 57.159 29.630 0.00 0.00 42.54 1.52
849 936 1.560923 GACAGATGGACGGATGAACG 58.439 55.000 0.00 0.00 40.31 3.95
852 939 0.460311 AGATGGACGGATGAACGGAC 59.540 55.000 0.00 0.00 38.39 4.79
1055 1177 3.518998 CGACGAGGACGATGCCCT 61.519 66.667 0.00 0.00 42.66 5.19
1296 1424 2.125512 ATGAGCCGCGAGTTCACC 60.126 61.111 8.23 0.00 0.00 4.02
1373 1504 0.969917 AACAGCAACAGCAACCACCA 60.970 50.000 0.00 0.00 0.00 4.17
1375 1506 2.127232 AGCAACAGCAACCACCACC 61.127 57.895 0.00 0.00 0.00 4.61
1376 1507 3.128375 CAACAGCAACCACCACCC 58.872 61.111 0.00 0.00 0.00 4.61
1377 1508 1.756172 CAACAGCAACCACCACCCA 60.756 57.895 0.00 0.00 0.00 4.51
1554 1685 4.796231 CTTGAGGTCGTCCCCGCG 62.796 72.222 0.00 0.00 0.00 6.46
1710 1841 2.811317 GAGCAGGTCGACAAGGCG 60.811 66.667 18.91 1.24 0.00 5.52
1740 1871 5.431765 TGGCTCAAGAAGATTGAGGTAATC 58.568 41.667 16.87 2.72 44.46 1.75
1743 1874 6.204495 GGCTCAAGAAGATTGAGGTAATCATC 59.796 42.308 16.87 0.00 46.20 2.92
1747 1878 8.981659 TCAAGAAGATTGAGGTAATCATCACTA 58.018 33.333 7.38 0.00 46.20 2.74
1748 1879 9.039870 CAAGAAGATTGAGGTAATCATCACTAC 57.960 37.037 7.38 0.00 46.20 2.73
1749 1880 8.546083 AGAAGATTGAGGTAATCATCACTACT 57.454 34.615 7.38 0.00 46.20 2.57
1750 1881 9.647918 AGAAGATTGAGGTAATCATCACTACTA 57.352 33.333 7.38 0.00 46.20 1.82
1751 1882 9.685828 GAAGATTGAGGTAATCATCACTACTAC 57.314 37.037 0.00 0.00 46.20 2.73
1752 1883 8.768501 AGATTGAGGTAATCATCACTACTACA 57.231 34.615 0.00 0.00 46.20 2.74
1753 1884 9.373450 AGATTGAGGTAATCATCACTACTACAT 57.627 33.333 0.00 0.00 46.20 2.29
1754 1885 9.416794 GATTGAGGTAATCATCACTACTACATG 57.583 37.037 0.00 0.00 43.79 3.21
1755 1886 8.533569 TTGAGGTAATCATCACTACTACATGA 57.466 34.615 0.00 0.00 37.89 3.07
1757 1888 8.414003 TGAGGTAATCATCACTACTACATGAAC 58.586 37.037 0.00 0.00 31.12 3.18
1759 1890 8.758829 AGGTAATCATCACTACTACATGAACAA 58.241 33.333 0.00 0.00 30.43 2.83
1760 1891 8.818057 GGTAATCATCACTACTACATGAACAAC 58.182 37.037 0.00 0.00 30.43 3.32
1761 1892 9.366216 GTAATCATCACTACTACATGAACAACA 57.634 33.333 0.00 0.00 30.43 3.33
1762 1893 8.846943 AATCATCACTACTACATGAACAACAA 57.153 30.769 0.00 0.00 30.43 2.83
1763 1894 7.889589 TCATCACTACTACATGAACAACAAG 57.110 36.000 0.00 0.00 0.00 3.16
1764 1895 7.666623 TCATCACTACTACATGAACAACAAGA 58.333 34.615 0.00 0.00 0.00 3.02
1765 1896 8.314021 TCATCACTACTACATGAACAACAAGAT 58.686 33.333 0.00 0.00 0.00 2.40
1769 1900 7.604164 CACTACTACATGAACAACAAGATCCTT 59.396 37.037 0.00 0.00 0.00 3.36
1771 1902 6.533730 ACTACATGAACAACAAGATCCTTCA 58.466 36.000 0.00 0.00 0.00 3.02
1772 1903 5.954296 ACATGAACAACAAGATCCTTCAG 57.046 39.130 0.00 0.00 0.00 3.02
1773 1904 5.624159 ACATGAACAACAAGATCCTTCAGA 58.376 37.500 0.00 0.00 0.00 3.27
1783 1924 6.955364 ACAAGATCCTTCAGATTCTGATGAA 58.045 36.000 23.98 10.30 40.39 2.57
1784 1925 7.400439 ACAAGATCCTTCAGATTCTGATGAAA 58.600 34.615 23.98 15.03 40.39 2.69
1786 1927 8.904834 CAAGATCCTTCAGATTCTGATGAAAAT 58.095 33.333 23.98 16.14 40.39 1.82
1787 1928 8.680039 AGATCCTTCAGATTCTGATGAAAATC 57.320 34.615 23.98 20.97 40.39 2.17
1788 1929 8.496088 AGATCCTTCAGATTCTGATGAAAATCT 58.504 33.333 23.98 22.18 40.39 2.40
1904 2066 7.340487 ACTCCTGTCAATTCAAGAAAGAAAAGT 59.660 33.333 0.00 0.00 0.00 2.66
1954 2116 6.830736 CAACTAAATTGCCCAAAATTAGCAC 58.169 36.000 12.81 0.00 35.96 4.40
1955 2117 6.107901 ACTAAATTGCCCAAAATTAGCACA 57.892 33.333 12.81 0.00 35.96 4.57
1957 2119 5.883503 AAATTGCCCAAAATTAGCACATG 57.116 34.783 0.00 0.00 35.96 3.21
1958 2120 4.822685 ATTGCCCAAAATTAGCACATGA 57.177 36.364 0.00 0.00 35.96 3.07
1959 2121 3.872511 TGCCCAAAATTAGCACATGAG 57.127 42.857 0.00 0.00 0.00 2.90
1960 2122 3.429492 TGCCCAAAATTAGCACATGAGA 58.571 40.909 0.00 0.00 0.00 3.27
2021 2211 2.967459 TTTGTGCACACTGATTAGCG 57.033 45.000 21.56 0.00 0.00 4.26
2027 2217 1.737029 GCACACTGATTAGCGAGCTGA 60.737 52.381 7.99 0.00 0.00 4.26
2057 2250 7.761038 TTTCTCCCAGATAAAAAGGAAGTTC 57.239 36.000 0.00 0.00 0.00 3.01
2085 2278 5.048507 GCCTAGCAACACTAATACAGTACC 58.951 45.833 0.00 0.00 34.98 3.34
2104 2297 7.042335 CAGTACCCCTTTTGAGTAGAATAGTG 58.958 42.308 0.00 0.00 0.00 2.74
2105 2298 6.729569 AGTACCCCTTTTGAGTAGAATAGTGT 59.270 38.462 0.00 0.00 0.00 3.55
2106 2299 7.897565 AGTACCCCTTTTGAGTAGAATAGTGTA 59.102 37.037 0.00 0.00 0.00 2.90
2140 2344 9.466497 TCTTGCTTTGAGAAAAGGTATATGAAT 57.534 29.630 0.80 0.00 0.00 2.57
2141 2345 9.727627 CTTGCTTTGAGAAAAGGTATATGAATC 57.272 33.333 0.80 0.00 0.00 2.52
2142 2346 9.466497 TTGCTTTGAGAAAAGGTATATGAATCT 57.534 29.630 0.80 0.00 0.00 2.40
2143 2347 9.113838 TGCTTTGAGAAAAGGTATATGAATCTC 57.886 33.333 0.80 0.00 34.01 2.75
2144 2348 8.563732 GCTTTGAGAAAAGGTATATGAATCTCC 58.436 37.037 0.00 0.00 32.78 3.71
2145 2349 9.618890 CTTTGAGAAAAGGTATATGAATCTCCA 57.381 33.333 0.00 0.00 32.78 3.86
2146 2350 9.973661 TTTGAGAAAAGGTATATGAATCTCCAA 57.026 29.630 0.00 0.00 32.78 3.53
2147 2351 9.618890 TTGAGAAAAGGTATATGAATCTCCAAG 57.381 33.333 0.00 0.00 32.78 3.61
2180 2388 5.782893 AGATAGAGGTGTTACATCAGAGC 57.217 43.478 0.00 0.00 30.12 4.09
2204 2412 1.620323 GCTGTCTCAATTGCCCCTTTT 59.380 47.619 0.00 0.00 0.00 2.27
2215 2423 0.469144 GCCCCTTTTCTTGTGGGTGA 60.469 55.000 0.00 0.00 40.36 4.02
2268 2478 0.171903 ATCATGCAACTTTCTGCGCC 59.828 50.000 4.18 0.00 45.74 6.53
2269 2479 1.171549 TCATGCAACTTTCTGCGCCA 61.172 50.000 4.18 0.00 45.74 5.69
2275 2485 0.389025 AACTTTCTGCGCCAAAAGGG 59.611 50.000 25.93 11.05 36.91 3.95
2276 2486 0.467290 ACTTTCTGCGCCAAAAGGGA 60.467 50.000 25.93 4.97 40.01 4.20
2277 2487 0.242017 CTTTCTGCGCCAAAAGGGAG 59.758 55.000 18.78 2.71 40.01 4.30
2283 2495 1.856265 GCGCCAAAAGGGAGACTGTG 61.856 60.000 0.00 0.00 39.08 3.66
2326 2538 1.317611 CGTTAGCACGTTCATCTCACG 59.682 52.381 0.00 0.00 41.84 4.35
2338 2550 0.955178 ATCTCACGGCGATAGGACTG 59.045 55.000 16.62 0.00 0.00 3.51
2341 2553 0.454600 TCACGGCGATAGGACTGTTC 59.545 55.000 16.62 0.00 0.00 3.18
2342 2554 0.456221 CACGGCGATAGGACTGTTCT 59.544 55.000 16.62 0.00 0.00 3.01
2353 2566 2.763448 AGGACTGTTCTATGAGAGTGGC 59.237 50.000 0.00 0.00 0.00 5.01
2356 2569 0.175760 TGTTCTATGAGAGTGGCGGC 59.824 55.000 0.00 0.00 0.00 6.53
2379 2592 0.113776 TGTCCGGGAGAACCACTAGT 59.886 55.000 0.00 0.00 40.22 2.57
2380 2593 1.355381 TGTCCGGGAGAACCACTAGTA 59.645 52.381 0.00 0.00 40.22 1.82
2381 2594 2.022934 GTCCGGGAGAACCACTAGTAG 58.977 57.143 0.00 0.00 40.22 2.57
2383 2596 1.749634 CCGGGAGAACCACTAGTAGTG 59.250 57.143 21.39 21.39 45.53 2.74
2384 2597 1.134560 CGGGAGAACCACTAGTAGTGC 59.865 57.143 22.67 10.84 44.63 4.40
2385 2598 2.176889 GGGAGAACCACTAGTAGTGCA 58.823 52.381 22.67 0.00 44.63 4.57
2387 2600 3.430929 GGGAGAACCACTAGTAGTGCATG 60.431 52.174 22.67 12.91 44.63 4.06
2388 2601 3.195825 GGAGAACCACTAGTAGTGCATGT 59.804 47.826 22.67 13.50 44.63 3.21
2389 2602 4.177026 GAGAACCACTAGTAGTGCATGTG 58.823 47.826 22.67 12.25 44.63 3.21
2390 2603 3.832490 AGAACCACTAGTAGTGCATGTGA 59.168 43.478 22.67 0.00 44.63 3.58
2391 2604 4.283467 AGAACCACTAGTAGTGCATGTGAA 59.717 41.667 22.67 0.00 44.63 3.18
2392 2605 4.617253 ACCACTAGTAGTGCATGTGAAA 57.383 40.909 22.67 0.00 44.63 2.69
2393 2606 4.968259 ACCACTAGTAGTGCATGTGAAAA 58.032 39.130 22.67 0.00 44.63 2.29
2394 2607 5.560724 ACCACTAGTAGTGCATGTGAAAAT 58.439 37.500 22.67 0.00 44.63 1.82
2395 2608 5.643777 ACCACTAGTAGTGCATGTGAAAATC 59.356 40.000 22.67 0.00 44.63 2.17
2396 2609 5.643348 CCACTAGTAGTGCATGTGAAAATCA 59.357 40.000 22.67 0.00 44.63 2.57
2397 2610 6.317140 CCACTAGTAGTGCATGTGAAAATCAT 59.683 38.462 22.67 0.00 44.63 2.45
2406 2619 5.203358 CATGTGAAAATCATGCTTGCTTG 57.797 39.130 2.58 2.58 36.68 4.01
2407 2620 3.061322 TGTGAAAATCATGCTTGCTTGC 58.939 40.909 3.96 0.00 0.00 4.01
2408 2621 3.243941 TGTGAAAATCATGCTTGCTTGCT 60.244 39.130 3.96 0.00 0.00 3.91
2410 2623 3.243941 TGAAAATCATGCTTGCTTGCTGT 60.244 39.130 3.96 0.00 0.00 4.40
2411 2624 2.649331 AATCATGCTTGCTTGCTGTC 57.351 45.000 3.96 0.00 0.00 3.51
2412 2625 0.815734 ATCATGCTTGCTTGCTGTCC 59.184 50.000 3.96 0.00 0.00 4.02
2413 2626 0.537828 TCATGCTTGCTTGCTGTCCA 60.538 50.000 3.96 0.00 0.00 4.02
2414 2627 0.109272 CATGCTTGCTTGCTGTCCAG 60.109 55.000 3.47 0.00 0.00 3.86
2415 2628 0.538977 ATGCTTGCTTGCTGTCCAGT 60.539 50.000 3.47 0.00 0.00 4.00
2416 2629 0.752743 TGCTTGCTTGCTGTCCAGTT 60.753 50.000 3.47 0.00 0.00 3.16
2417 2630 1.238439 GCTTGCTTGCTGTCCAGTTA 58.762 50.000 0.00 0.00 0.00 2.24
2418 2631 1.198637 GCTTGCTTGCTGTCCAGTTAG 59.801 52.381 0.00 0.00 0.00 2.34
2419 2632 2.498167 CTTGCTTGCTGTCCAGTTAGT 58.502 47.619 0.00 0.00 0.00 2.24
2420 2633 1.882912 TGCTTGCTGTCCAGTTAGTG 58.117 50.000 0.00 0.00 0.00 2.74
2421 2634 1.140852 TGCTTGCTGTCCAGTTAGTGT 59.859 47.619 0.00 0.00 0.00 3.55
2422 2635 2.367241 TGCTTGCTGTCCAGTTAGTGTA 59.633 45.455 0.00 0.00 0.00 2.90
2423 2636 3.007940 TGCTTGCTGTCCAGTTAGTGTAT 59.992 43.478 0.00 0.00 0.00 2.29
2424 2637 3.619038 GCTTGCTGTCCAGTTAGTGTATC 59.381 47.826 0.00 0.00 0.00 2.24
2425 2638 3.887621 TGCTGTCCAGTTAGTGTATCC 57.112 47.619 0.00 0.00 0.00 2.59
2426 2639 3.441101 TGCTGTCCAGTTAGTGTATCCT 58.559 45.455 0.00 0.00 0.00 3.24
2445 2658 5.459536 TCCTATCTGAATGTTCATCTCGG 57.540 43.478 0.00 0.00 36.46 4.63
2479 2757 0.537188 ACTGTGATGGATCCCACGAC 59.463 55.000 9.90 1.30 35.80 4.34
2480 2758 0.179073 CTGTGATGGATCCCACGACC 60.179 60.000 9.90 0.00 35.80 4.79
2481 2759 0.907230 TGTGATGGATCCCACGACCA 60.907 55.000 9.90 0.00 35.80 4.02
2482 2760 0.462047 GTGATGGATCCCACGACCAC 60.462 60.000 9.90 4.60 35.80 4.16
2649 2929 0.523072 CCAACTTCATGAAGGCCGTG 59.477 55.000 33.11 24.23 42.53 4.94
2689 2969 0.598680 CTCATTCTTCTAGCCCGCCG 60.599 60.000 0.00 0.00 0.00 6.46
2703 2992 4.785453 GCCGGCCTCCTCAACTGG 62.785 72.222 18.11 0.00 0.00 4.00
2704 2993 3.003173 CCGGCCTCCTCAACTGGA 61.003 66.667 0.00 0.00 34.52 3.86
2732 3021 6.876155 TCCTACGTATGTGTTTTTGCCTATA 58.124 36.000 0.00 0.00 0.00 1.31
2736 3025 5.583457 ACGTATGTGTTTTTGCCTATAGGTC 59.417 40.000 20.10 12.59 37.57 3.85
2768 3073 3.344215 CTGCTGCATCCGATCGGC 61.344 66.667 29.62 18.01 34.68 5.54
2828 3141 1.134818 TGCTGCCTCCGTTGTATACTG 60.135 52.381 4.17 0.00 0.00 2.74
2890 3204 2.159448 TGTTTGGCTTGTATATGCACGC 60.159 45.455 12.90 12.90 33.57 5.34
2905 3219 1.826327 CACGCAAAACTGGTGTGAAG 58.174 50.000 0.06 0.00 46.81 3.02
2919 3233 6.065976 TGGTGTGAAGATGGAATGAATAGT 57.934 37.500 0.00 0.00 0.00 2.12
2953 3267 2.522185 ACCTGCAAACATTCAGAGCAT 58.478 42.857 0.00 0.00 34.35 3.79
2960 3274 4.746115 GCAAACATTCAGAGCATTTGTTCA 59.254 37.500 0.00 0.00 33.70 3.18
2966 3280 7.255569 ACATTCAGAGCATTTGTTCATATGTG 58.744 34.615 1.90 0.00 29.41 3.21
2990 3304 2.290323 ACTGCTGGTGTGGATCTTTACC 60.290 50.000 0.00 0.00 0.00 2.85
2997 3311 4.349636 TGGTGTGGATCTTTACCTTCTTCA 59.650 41.667 11.97 0.00 34.32 3.02
2998 3312 5.014123 TGGTGTGGATCTTTACCTTCTTCAT 59.986 40.000 11.97 0.00 34.32 2.57
3000 3314 6.094186 GGTGTGGATCTTTACCTTCTTCATTC 59.906 42.308 0.00 0.00 0.00 2.67
3001 3315 6.655003 GTGTGGATCTTTACCTTCTTCATTCA 59.345 38.462 0.00 0.00 0.00 2.57
3002 3316 6.881065 TGTGGATCTTTACCTTCTTCATTCAG 59.119 38.462 0.00 0.00 0.00 3.02
3003 3317 6.881602 GTGGATCTTTACCTTCTTCATTCAGT 59.118 38.462 0.00 0.00 0.00 3.41
3005 3319 7.607991 TGGATCTTTACCTTCTTCATTCAGTTC 59.392 37.037 0.00 0.00 0.00 3.01
3007 3321 7.969536 TCTTTACCTTCTTCATTCAGTTCTG 57.030 36.000 0.00 0.00 0.00 3.02
3008 3322 7.509546 TCTTTACCTTCTTCATTCAGTTCTGT 58.490 34.615 0.00 0.00 0.00 3.41
3009 3323 8.647796 TCTTTACCTTCTTCATTCAGTTCTGTA 58.352 33.333 0.00 0.00 0.00 2.74
3010 3324 9.442047 CTTTACCTTCTTCATTCAGTTCTGTAT 57.558 33.333 0.00 0.00 0.00 2.29
3011 3325 8.777865 TTACCTTCTTCATTCAGTTCTGTATG 57.222 34.615 11.41 11.41 0.00 2.39
3035 3353 7.740246 TGTATATATCTAGCTGAAAGTCGTCG 58.260 38.462 0.00 0.00 35.30 5.12
3044 3362 1.269413 TGAAAGTCGTCGTGGTCCTTC 60.269 52.381 0.00 0.00 0.00 3.46
3057 3375 3.101437 TGGTCCTTCTAACGCCTATCAA 58.899 45.455 0.00 0.00 0.00 2.57
3064 3382 5.067936 CCTTCTAACGCCTATCAAGAGAGAA 59.932 44.000 0.00 0.00 0.00 2.87
3065 3383 5.502153 TCTAACGCCTATCAAGAGAGAAC 57.498 43.478 0.00 0.00 0.00 3.01
3066 3384 3.528597 AACGCCTATCAAGAGAGAACC 57.471 47.619 0.00 0.00 0.00 3.62
3067 3385 2.457598 ACGCCTATCAAGAGAGAACCA 58.542 47.619 0.00 0.00 0.00 3.67
3068 3386 2.832129 ACGCCTATCAAGAGAGAACCAA 59.168 45.455 0.00 0.00 0.00 3.67
3069 3387 3.190874 CGCCTATCAAGAGAGAACCAAC 58.809 50.000 0.00 0.00 0.00 3.77
3070 3388 3.368427 CGCCTATCAAGAGAGAACCAACA 60.368 47.826 0.00 0.00 0.00 3.33
3071 3389 4.579869 GCCTATCAAGAGAGAACCAACAA 58.420 43.478 0.00 0.00 0.00 2.83
3088 3411 2.241160 ACAAGTTGCATCAATGGCTGA 58.759 42.857 1.81 0.00 38.81 4.26
3098 3421 1.134699 TCAATGGCTGATGGAGACGAC 60.135 52.381 0.00 0.00 28.23 4.34
3105 3428 2.164624 GCTGATGGAGACGACTGTTACT 59.835 50.000 0.00 0.00 0.00 2.24
3106 3429 3.367498 GCTGATGGAGACGACTGTTACTT 60.367 47.826 0.00 0.00 0.00 2.24
3108 3431 2.433868 TGGAGACGACTGTTACTTGC 57.566 50.000 0.00 0.00 0.00 4.01
3109 3432 1.000506 TGGAGACGACTGTTACTTGCC 59.999 52.381 0.00 0.00 0.00 4.52
3110 3433 1.672145 GGAGACGACTGTTACTTGCCC 60.672 57.143 0.00 0.00 0.00 5.36
3111 3434 1.272769 GAGACGACTGTTACTTGCCCT 59.727 52.381 0.00 0.00 0.00 5.19
3112 3435 1.692519 AGACGACTGTTACTTGCCCTT 59.307 47.619 0.00 0.00 0.00 3.95
3113 3436 1.798813 GACGACTGTTACTTGCCCTTG 59.201 52.381 0.00 0.00 0.00 3.61
3114 3437 0.517316 CGACTGTTACTTGCCCTTGC 59.483 55.000 0.00 0.00 38.26 4.01
3135 3458 0.962356 CACACCCAGGATCAGGCAAC 60.962 60.000 0.00 0.00 0.00 4.17
3141 3464 2.022195 CCAGGATCAGGCAACAAGATG 58.978 52.381 0.00 0.00 41.41 2.90
3146 3469 0.770499 TCAGGCAACAAGATGACCCA 59.230 50.000 0.00 0.00 41.41 4.51
3147 3470 0.883833 CAGGCAACAAGATGACCCAC 59.116 55.000 0.00 0.00 41.41 4.61
3148 3471 0.478072 AGGCAACAAGATGACCCACA 59.522 50.000 0.00 0.00 41.41 4.17
3149 3472 0.598065 GGCAACAAGATGACCCACAC 59.402 55.000 0.00 0.00 0.00 3.82
3150 3473 0.598065 GCAACAAGATGACCCACACC 59.402 55.000 0.00 0.00 0.00 4.16
3151 3474 1.247567 CAACAAGATGACCCACACCC 58.752 55.000 0.00 0.00 0.00 4.61
3152 3475 1.149101 AACAAGATGACCCACACCCT 58.851 50.000 0.00 0.00 0.00 4.34
3166 3489 0.380378 CACCCTTGTGTGTTCCAACG 59.620 55.000 0.00 0.00 37.72 4.10
3167 3490 0.253610 ACCCTTGTGTGTTCCAACGA 59.746 50.000 0.00 0.00 0.00 3.85
3169 3492 1.333619 CCCTTGTGTGTTCCAACGAAG 59.666 52.381 0.00 0.00 0.00 3.79
3175 3501 1.595929 TGTTCCAACGAAGACGGCC 60.596 57.895 0.00 0.00 44.46 6.13
3184 3510 2.410939 ACGAAGACGGCCTAGTTTTTC 58.589 47.619 0.00 0.56 44.46 2.29
3185 3511 2.224113 ACGAAGACGGCCTAGTTTTTCA 60.224 45.455 0.00 0.00 44.46 2.69
3186 3512 2.412089 CGAAGACGGCCTAGTTTTTCAG 59.588 50.000 0.00 0.00 35.72 3.02
3187 3513 3.400255 GAAGACGGCCTAGTTTTTCAGT 58.600 45.455 0.00 0.00 0.00 3.41
3188 3514 2.767505 AGACGGCCTAGTTTTTCAGTG 58.232 47.619 0.00 0.00 0.00 3.66
3189 3515 1.804748 GACGGCCTAGTTTTTCAGTGG 59.195 52.381 0.00 0.00 0.00 4.00
3190 3516 1.142262 ACGGCCTAGTTTTTCAGTGGT 59.858 47.619 0.00 0.00 0.00 4.16
3191 3517 1.535462 CGGCCTAGTTTTTCAGTGGTG 59.465 52.381 0.00 0.00 0.00 4.17
3192 3518 1.886542 GGCCTAGTTTTTCAGTGGTGG 59.113 52.381 0.00 0.00 0.00 4.61
3193 3519 2.488347 GGCCTAGTTTTTCAGTGGTGGA 60.488 50.000 0.00 0.00 0.00 4.02
3215 3541 2.514013 CGTGCTGCCCGTCGATAAC 61.514 63.158 0.00 0.00 0.00 1.89
3268 3597 7.265673 TCTTAGTTCTGCAGCGACTTTATTAT 58.734 34.615 22.19 4.98 0.00 1.28
3304 3633 1.216710 CAGAGTCCGACCTTGGCTC 59.783 63.158 0.00 0.00 34.42 4.70
3312 3641 1.082104 GACCTTGGCTCGCGTTTTG 60.082 57.895 5.77 0.00 0.00 2.44
3319 3648 1.120437 GGCTCGCGTTTTGTTTTCTG 58.880 50.000 5.77 0.00 0.00 3.02
3322 3651 2.213353 GCTCGCGTTTTGTTTTCTGTTC 59.787 45.455 5.77 0.00 0.00 3.18
3335 3664 6.572519 TGTTTTCTGTTCTTGAGATTTTGGG 58.427 36.000 0.00 0.00 0.00 4.12
3339 3668 5.644188 TCTGTTCTTGAGATTTTGGGGATT 58.356 37.500 0.00 0.00 0.00 3.01
3417 3763 4.111016 TGTGCGGCCGTCGAGTAG 62.111 66.667 28.70 0.00 42.43 2.57
3430 3776 1.683385 TCGAGTAGGCATCATGGTGAG 59.317 52.381 11.02 0.00 0.00 3.51
3574 3926 2.040544 CCGTGCCTGTGATTGACCC 61.041 63.158 0.00 0.00 0.00 4.46
3576 3928 0.888736 CGTGCCTGTGATTGACCCAA 60.889 55.000 0.00 0.00 0.00 4.12
3577 3929 0.598065 GTGCCTGTGATTGACCCAAC 59.402 55.000 0.00 0.00 0.00 3.77
3578 3930 0.478072 TGCCTGTGATTGACCCAACT 59.522 50.000 0.00 0.00 0.00 3.16
3579 3931 1.702401 TGCCTGTGATTGACCCAACTA 59.298 47.619 0.00 0.00 0.00 2.24
3580 3932 2.290260 TGCCTGTGATTGACCCAACTAG 60.290 50.000 0.00 0.00 0.00 2.57
3582 3934 3.600388 CCTGTGATTGACCCAACTAGAC 58.400 50.000 0.00 0.00 0.00 2.59
3583 3935 3.254060 CTGTGATTGACCCAACTAGACG 58.746 50.000 0.00 0.00 0.00 4.18
3585 3937 3.056821 TGTGATTGACCCAACTAGACGAG 60.057 47.826 0.00 0.00 0.00 4.18
3586 3938 2.496070 TGATTGACCCAACTAGACGAGG 59.504 50.000 0.00 0.00 0.00 4.63
3587 3939 1.263356 TTGACCCAACTAGACGAGGG 58.737 55.000 0.00 4.38 46.96 4.30
3589 3941 1.104630 GACCCAACTAGACGAGGGAG 58.895 60.000 16.55 0.00 44.30 4.30
3590 3942 0.324460 ACCCAACTAGACGAGGGAGG 60.324 60.000 16.55 1.27 44.30 4.30
3591 3943 1.043673 CCCAACTAGACGAGGGAGGG 61.044 65.000 0.00 0.00 44.30 4.30
3593 3945 1.394618 CAACTAGACGAGGGAGGGAG 58.605 60.000 0.00 0.00 0.00 4.30
3594 3946 0.259356 AACTAGACGAGGGAGGGAGG 59.741 60.000 0.00 0.00 0.00 4.30
3623 3975 1.213013 GTCTGGCATCGACACGAGT 59.787 57.895 2.30 0.00 39.91 4.18
3624 3976 0.798771 GTCTGGCATCGACACGAGTC 60.799 60.000 2.56 2.56 39.91 3.36
3636 3988 2.490217 CGAGTCCGTGGCTGTAGG 59.510 66.667 0.00 0.00 0.00 3.18
3645 4012 2.590007 GGCTGTAGGCATCAGGCG 60.590 66.667 16.39 0.00 45.49 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.560146 GGACCCCTAGACCTCTTTTGG 59.440 57.143 0.00 0.00 0.00 3.28
1 2 2.502130 GAGGACCCCTAGACCTCTTTTG 59.498 54.545 0.00 0.00 44.54 2.44
2 3 2.562443 GGAGGACCCCTAGACCTCTTTT 60.562 54.545 17.73 0.00 46.39 2.27
3 4 1.008571 GGAGGACCCCTAGACCTCTTT 59.991 57.143 17.73 0.00 46.39 2.52
4 5 0.637743 GGAGGACCCCTAGACCTCTT 59.362 60.000 17.73 0.00 46.39 2.85
5 6 2.334435 GGAGGACCCCTAGACCTCT 58.666 63.158 17.73 0.00 46.39 3.69
24 25 4.499116 ATGGACGGGAGGAGGGGG 62.499 72.222 0.00 0.00 0.00 5.40
25 26 2.844839 GATGGACGGGAGGAGGGG 60.845 72.222 0.00 0.00 0.00 4.79
26 27 2.844839 GGATGGACGGGAGGAGGG 60.845 72.222 0.00 0.00 0.00 4.30
27 28 1.834822 GAGGATGGACGGGAGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
28 29 1.834822 GGAGGATGGACGGGAGGAG 60.835 68.421 0.00 0.00 0.00 3.69
29 30 1.886730 AAGGAGGATGGACGGGAGGA 61.887 60.000 0.00 0.00 0.00 3.71
30 31 1.383248 AAGGAGGATGGACGGGAGG 60.383 63.158 0.00 0.00 0.00 4.30
31 32 1.739338 CGAAGGAGGATGGACGGGAG 61.739 65.000 0.00 0.00 0.00 4.30
32 33 1.756950 CGAAGGAGGATGGACGGGA 60.757 63.158 0.00 0.00 0.00 5.14
33 34 2.815308 CGAAGGAGGATGGACGGG 59.185 66.667 0.00 0.00 0.00 5.28
34 35 2.107141 GCGAAGGAGGATGGACGG 59.893 66.667 0.00 0.00 0.00 4.79
35 36 2.107141 GGCGAAGGAGGATGGACG 59.893 66.667 0.00 0.00 0.00 4.79
36 37 0.181350 ATTGGCGAAGGAGGATGGAC 59.819 55.000 0.00 0.00 0.00 4.02
37 38 1.694150 CTATTGGCGAAGGAGGATGGA 59.306 52.381 0.00 0.00 0.00 3.41
38 39 1.694150 TCTATTGGCGAAGGAGGATGG 59.306 52.381 0.00 0.00 0.00 3.51
39 40 3.594134 GATCTATTGGCGAAGGAGGATG 58.406 50.000 0.00 0.00 0.00 3.51
40 41 2.232452 CGATCTATTGGCGAAGGAGGAT 59.768 50.000 0.00 0.00 0.00 3.24
41 42 1.613925 CGATCTATTGGCGAAGGAGGA 59.386 52.381 0.00 0.00 0.00 3.71
42 43 1.341531 ACGATCTATTGGCGAAGGAGG 59.658 52.381 0.00 0.00 0.00 4.30
43 44 2.667137 GACGATCTATTGGCGAAGGAG 58.333 52.381 0.00 0.00 0.00 3.69
44 45 1.001706 CGACGATCTATTGGCGAAGGA 60.002 52.381 0.00 0.00 45.63 3.36
45 46 1.409412 CGACGATCTATTGGCGAAGG 58.591 55.000 0.00 0.00 45.63 3.46
49 50 1.251355 CGATCGACGATCTATTGGCG 58.749 55.000 29.55 15.39 44.12 5.69
50 51 1.068472 ACCGATCGACGATCTATTGGC 60.068 52.381 29.55 8.09 45.77 4.52
51 52 2.585845 CACCGATCGACGATCTATTGG 58.414 52.381 29.55 25.02 45.77 3.16
52 53 2.585845 CCACCGATCGACGATCTATTG 58.414 52.381 29.55 22.62 45.77 1.90
53 54 1.540267 CCCACCGATCGACGATCTATT 59.460 52.381 29.55 14.50 45.77 1.73
54 55 1.166129 CCCACCGATCGACGATCTAT 58.834 55.000 29.55 17.67 45.77 1.98
55 56 0.107268 TCCCACCGATCGACGATCTA 59.893 55.000 29.55 9.99 45.77 1.98
56 57 1.153025 TCCCACCGATCGACGATCT 60.153 57.895 29.55 13.85 45.77 2.75
57 58 1.283181 CTCCCACCGATCGACGATC 59.717 63.158 24.76 24.76 45.77 3.69
58 59 1.445716 GACTCCCACCGATCGACGAT 61.446 60.000 18.66 10.78 45.77 3.73
59 60 2.045634 ACTCCCACCGATCGACGA 60.046 61.111 18.66 0.00 45.77 4.20
60 61 2.408022 GACTCCCACCGATCGACG 59.592 66.667 18.66 6.73 42.18 5.12
61 62 1.091771 TACGACTCCCACCGATCGAC 61.092 60.000 18.66 0.00 37.97 4.20
62 63 0.812811 CTACGACTCCCACCGATCGA 60.813 60.000 18.66 0.00 37.97 3.59
63 64 1.094073 ACTACGACTCCCACCGATCG 61.094 60.000 8.51 8.51 40.39 3.69
64 65 1.101331 AACTACGACTCCCACCGATC 58.899 55.000 0.00 0.00 0.00 3.69
65 66 1.475682 GAAACTACGACTCCCACCGAT 59.524 52.381 0.00 0.00 0.00 4.18
66 67 0.883833 GAAACTACGACTCCCACCGA 59.116 55.000 0.00 0.00 0.00 4.69
96 97 1.413077 AGACGGAGGCCTAACTAATGC 59.587 52.381 4.42 0.00 0.00 3.56
101 102 0.039911 AGTCAGACGGAGGCCTAACT 59.960 55.000 4.42 0.00 0.00 2.24
106 107 2.262915 CACAGTCAGACGGAGGCC 59.737 66.667 7.80 0.00 0.00 5.19
115 116 1.202348 CCATAGTCTCGCCACAGTCAG 60.202 57.143 0.00 0.00 0.00 3.51
121 122 0.530744 TGACACCATAGTCTCGCCAC 59.469 55.000 0.00 0.00 39.27 5.01
152 153 0.178301 GAACGAGGGGAGGTGGATTC 59.822 60.000 0.00 0.00 0.00 2.52
154 155 1.689582 GGAACGAGGGGAGGTGGAT 60.690 63.158 0.00 0.00 0.00 3.41
155 156 2.284405 GGAACGAGGGGAGGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
183 193 1.067212 ACGCCTCCTAGCAATACGAAG 59.933 52.381 0.00 0.00 0.00 3.79
191 201 1.888436 CTTCCACACGCCTCCTAGCA 61.888 60.000 0.00 0.00 0.00 3.49
194 204 0.824109 CATCTTCCACACGCCTCCTA 59.176 55.000 0.00 0.00 0.00 2.94
201 211 1.148310 GACACACCATCTTCCACACG 58.852 55.000 0.00 0.00 0.00 4.49
230 240 3.581332 AGAAACACCAGACCCGAAGAATA 59.419 43.478 0.00 0.00 0.00 1.75
231 241 2.372172 AGAAACACCAGACCCGAAGAAT 59.628 45.455 0.00 0.00 0.00 2.40
238 248 1.754226 TGCAAAAGAAACACCAGACCC 59.246 47.619 0.00 0.00 0.00 4.46
272 282 2.107750 GCTCTGCAGGATAGCGCA 59.892 61.111 15.13 0.00 37.31 6.09
279 289 0.608130 ACGTTATGTGCTCTGCAGGA 59.392 50.000 15.13 0.00 40.08 3.86
303 313 1.362717 CCGGCGGATCAAGACGTAT 59.637 57.895 24.41 0.00 38.70 3.06
304 314 2.802792 CCGGCGGATCAAGACGTA 59.197 61.111 24.41 0.00 38.70 3.57
305 315 4.814294 GCCGGCGGATCAAGACGT 62.814 66.667 33.44 0.00 38.70 4.34
306 316 4.514577 AGCCGGCGGATCAAGACG 62.515 66.667 33.44 8.50 40.35 4.18
319 329 1.982073 GCCGATCAAAACTGGAGCCG 61.982 60.000 0.00 0.00 0.00 5.52
371 381 4.129380 CCAGAGAACACAAATCTCACACA 58.871 43.478 6.35 0.00 44.64 3.72
403 413 1.280998 CTTGTAGACCCCAATTCCGGT 59.719 52.381 0.00 0.00 34.13 5.28
445 455 4.349663 GTGTAACAAATTGCCGCTATGA 57.650 40.909 0.00 0.00 36.32 2.15
477 487 0.787787 TTGATTTGAAGACGTCGGCG 59.212 50.000 8.42 8.42 44.93 6.46
512 522 4.895224 AAAGCTTATAAAAGTAGCGCCC 57.105 40.909 2.29 0.00 39.82 6.13
533 543 5.561679 AGCAAACTTGTTTAAACCCCAAAA 58.438 33.333 15.59 2.25 0.00 2.44
537 547 3.724374 GGAGCAAACTTGTTTAAACCCC 58.276 45.455 15.59 0.00 0.00 4.95
574 584 3.596459 AAGCCCCTTGCCCCCTCTA 62.596 63.158 0.00 0.00 42.71 2.43
576 586 3.997952 AAAGCCCCTTGCCCCCTC 61.998 66.667 0.00 0.00 42.71 4.30
583 593 1.466025 TTGCTGAGCAAAGCCCCTTG 61.466 55.000 18.76 0.00 45.96 3.61
623 705 7.682865 CGATAATGTAAGACGTTTCTTTGACAC 59.317 37.037 0.00 0.00 39.17 3.67
631 713 6.032094 TCAGTCCGATAATGTAAGACGTTTC 58.968 40.000 0.00 0.00 32.70 2.78
635 717 4.537965 CCTCAGTCCGATAATGTAAGACG 58.462 47.826 0.00 0.00 32.70 4.18
703 786 7.266922 TGTTCGTTTAAGCCTTGTTCTTATT 57.733 32.000 0.00 0.00 0.00 1.40
708 791 4.611366 CGAATGTTCGTTTAAGCCTTGTTC 59.389 41.667 6.97 0.00 45.09 3.18
810 897 3.948719 GGGTGTGGGTGAGGCGAA 61.949 66.667 0.00 0.00 0.00 4.70
849 936 2.775384 TGGGGTGTGGTTATATCAGTCC 59.225 50.000 0.00 0.00 0.00 3.85
852 939 4.389374 GTGATGGGGTGTGGTTATATCAG 58.611 47.826 0.00 0.00 0.00 2.90
1055 1177 3.072468 CCTCGTCGTTGGCCCCTA 61.072 66.667 0.00 0.00 0.00 3.53
1095 1217 3.964875 GTGTTGGTGGTGCTGGCG 61.965 66.667 0.00 0.00 0.00 5.69
1096 1218 3.605664 GGTGTTGGTGGTGCTGGC 61.606 66.667 0.00 0.00 0.00 4.85
1337 1468 1.751924 TGTTGTTACTGTTGGGGTTGC 59.248 47.619 0.00 0.00 0.00 4.17
1338 1469 2.223711 GCTGTTGTTACTGTTGGGGTTG 60.224 50.000 0.00 0.00 0.00 3.77
1339 1470 2.028876 GCTGTTGTTACTGTTGGGGTT 58.971 47.619 0.00 0.00 0.00 4.11
1342 1473 2.425312 TGTTGCTGTTGTTACTGTTGGG 59.575 45.455 0.00 0.00 0.00 4.12
1710 1841 1.743252 CTTCTTGAGCCAGGCGGAC 60.743 63.158 5.55 2.45 0.00 4.79
1740 1871 7.889589 TCTTGTTGTTCATGTAGTAGTGATG 57.110 36.000 0.00 0.00 0.00 3.07
1743 1874 7.099764 AGGATCTTGTTGTTCATGTAGTAGTG 58.900 38.462 0.00 0.00 0.00 2.74
1747 1878 6.533730 TGAAGGATCTTGTTGTTCATGTAGT 58.466 36.000 0.00 0.00 0.00 2.73
1748 1879 6.875726 TCTGAAGGATCTTGTTGTTCATGTAG 59.124 38.462 0.00 0.00 0.00 2.74
1749 1880 6.768483 TCTGAAGGATCTTGTTGTTCATGTA 58.232 36.000 0.00 0.00 0.00 2.29
1750 1881 5.624159 TCTGAAGGATCTTGTTGTTCATGT 58.376 37.500 0.00 0.00 0.00 3.21
1751 1882 6.754702 ATCTGAAGGATCTTGTTGTTCATG 57.245 37.500 0.00 0.00 0.00 3.07
1752 1883 7.120873 CAGAATCTGAAGGATCTTGTTGTTCAT 59.879 37.037 3.77 0.00 32.44 2.57
1753 1884 6.429078 CAGAATCTGAAGGATCTTGTTGTTCA 59.571 38.462 3.77 0.00 32.44 3.18
1754 1885 6.652481 TCAGAATCTGAAGGATCTTGTTGTTC 59.348 38.462 10.99 0.00 37.57 3.18
1755 1886 6.537355 TCAGAATCTGAAGGATCTTGTTGTT 58.463 36.000 10.99 0.00 37.57 2.83
1757 1888 6.822170 TCATCAGAATCTGAAGGATCTTGTTG 59.178 38.462 17.59 6.91 44.04 3.33
1759 1890 6.556974 TCATCAGAATCTGAAGGATCTTGT 57.443 37.500 17.59 0.00 44.04 3.16
1760 1891 7.860918 TTTCATCAGAATCTGAAGGATCTTG 57.139 36.000 17.59 9.04 44.04 3.02
1761 1892 9.122779 GATTTTCATCAGAATCTGAAGGATCTT 57.877 33.333 17.59 5.78 44.04 2.40
1762 1893 8.496088 AGATTTTCATCAGAATCTGAAGGATCT 58.504 33.333 17.59 16.78 44.04 2.75
1763 1894 8.680039 AGATTTTCATCAGAATCTGAAGGATC 57.320 34.615 17.59 15.16 44.04 3.36
1764 1895 9.558396 GTAGATTTTCATCAGAATCTGAAGGAT 57.442 33.333 17.59 8.06 44.04 3.24
1765 1896 8.766476 AGTAGATTTTCATCAGAATCTGAAGGA 58.234 33.333 17.59 14.42 44.04 3.36
1769 1900 7.767659 CCACAGTAGATTTTCATCAGAATCTGA 59.232 37.037 15.97 15.97 44.99 3.27
1771 1902 7.855375 TCCACAGTAGATTTTCATCAGAATCT 58.145 34.615 4.29 4.29 43.17 2.40
1772 1903 8.498054 TTCCACAGTAGATTTTCATCAGAATC 57.502 34.615 0.00 0.00 32.89 2.52
1773 1904 9.118300 GATTCCACAGTAGATTTTCATCAGAAT 57.882 33.333 0.00 0.00 32.89 2.40
1783 1924 6.069963 AGCAAGTAGGATTCCACAGTAGATTT 60.070 38.462 5.29 0.00 0.00 2.17
1784 1925 5.426833 AGCAAGTAGGATTCCACAGTAGATT 59.573 40.000 5.29 0.00 0.00 2.40
1786 1927 4.353777 AGCAAGTAGGATTCCACAGTAGA 58.646 43.478 5.29 0.00 0.00 2.59
1787 1928 4.744795 AGCAAGTAGGATTCCACAGTAG 57.255 45.455 5.29 0.00 0.00 2.57
1788 1929 5.012664 TCAAAGCAAGTAGGATTCCACAGTA 59.987 40.000 5.29 0.00 0.00 2.74
1877 2039 6.624352 TTCTTTCTTGAATTGACAGGAGTG 57.376 37.500 0.00 0.00 0.00 3.51
1878 2040 7.340487 ACTTTTCTTTCTTGAATTGACAGGAGT 59.660 33.333 0.00 0.00 0.00 3.85
1879 2041 7.710896 ACTTTTCTTTCTTGAATTGACAGGAG 58.289 34.615 0.00 0.00 0.00 3.69
1904 2066 9.261180 GCTGTATTAATTTGTCATGCTCTACTA 57.739 33.333 0.00 0.00 0.00 1.82
1938 2100 3.831333 TCTCATGTGCTAATTTTGGGCAA 59.169 39.130 0.00 0.00 37.73 4.52
1948 2110 5.897250 TGGTCTACCTAATCTCATGTGCTAA 59.103 40.000 0.02 0.00 36.82 3.09
1951 2113 4.672587 TGGTCTACCTAATCTCATGTGC 57.327 45.455 0.02 0.00 36.82 4.57
1952 2114 5.241728 TCGATGGTCTACCTAATCTCATGTG 59.758 44.000 0.02 0.00 36.82 3.21
1953 2115 5.386060 TCGATGGTCTACCTAATCTCATGT 58.614 41.667 0.02 0.00 36.82 3.21
1954 2116 5.966742 TCGATGGTCTACCTAATCTCATG 57.033 43.478 0.02 0.00 36.82 3.07
1955 2117 5.420421 CCATCGATGGTCTACCTAATCTCAT 59.580 44.000 32.39 0.00 43.05 2.90
1957 2119 5.317733 CCATCGATGGTCTACCTAATCTC 57.682 47.826 32.39 0.00 43.05 2.75
2008 2198 2.284263 TCAGCTCGCTAATCAGTGTG 57.716 50.000 0.00 0.00 33.77 3.82
2009 2199 3.533606 AATCAGCTCGCTAATCAGTGT 57.466 42.857 0.00 0.00 33.77 3.55
2042 2235 5.183969 AGGCGTAGGAACTTCCTTTTTATC 58.816 41.667 15.78 2.40 46.91 1.75
2057 2250 2.953466 TTAGTGTTGCTAGGCGTAGG 57.047 50.000 14.89 0.00 0.00 3.18
2061 2254 3.782046 ACTGTATTAGTGTTGCTAGGCG 58.218 45.455 0.00 0.00 38.49 5.52
2085 2278 9.892130 AGATTTACACTATTCTACTCAAAAGGG 57.108 33.333 0.00 0.00 0.00 3.95
2106 2299 8.864087 ACCTTTTCTCAAAGCAAGAATAGATTT 58.136 29.630 5.31 0.00 38.53 2.17
2155 2363 7.308891 CGCTCTGATGTAACACCTCTATCTAAT 60.309 40.741 0.00 0.00 0.00 1.73
2159 2367 4.036971 ACGCTCTGATGTAACACCTCTATC 59.963 45.833 0.00 0.00 0.00 2.08
2160 2368 3.954904 ACGCTCTGATGTAACACCTCTAT 59.045 43.478 0.00 0.00 0.00 1.98
2179 2387 1.154150 GCAATTGAGACAGCCACGC 60.154 57.895 10.34 0.00 0.00 5.34
2180 2388 1.503542 GGCAATTGAGACAGCCACG 59.496 57.895 10.34 0.00 46.26 4.94
2204 2412 0.473755 ACATGCACTCACCCACAAGA 59.526 50.000 0.00 0.00 0.00 3.02
2268 2478 3.181454 ACAGGTACACAGTCTCCCTTTTG 60.181 47.826 0.00 0.00 0.00 2.44
2269 2479 3.046374 ACAGGTACACAGTCTCCCTTTT 58.954 45.455 0.00 0.00 0.00 2.27
2275 2485 4.792521 AATCTCACAGGTACACAGTCTC 57.207 45.455 0.00 0.00 0.00 3.36
2276 2486 5.952347 TGATAATCTCACAGGTACACAGTCT 59.048 40.000 0.00 0.00 0.00 3.24
2277 2487 6.208988 TGATAATCTCACAGGTACACAGTC 57.791 41.667 0.00 0.00 0.00 3.51
2283 2495 5.542779 GGTCCATGATAATCTCACAGGTAC 58.457 45.833 0.00 0.00 36.48 3.34
2326 2538 3.821600 TCTCATAGAACAGTCCTATCGCC 59.178 47.826 0.00 0.00 0.00 5.54
2338 2550 0.530870 GGCCGCCACTCTCATAGAAC 60.531 60.000 3.91 0.00 0.00 3.01
2341 2553 0.179000 AAAGGCCGCCACTCTCATAG 59.821 55.000 13.15 0.00 0.00 2.23
2342 2554 0.107703 CAAAGGCCGCCACTCTCATA 60.108 55.000 13.15 0.00 0.00 2.15
2356 2569 0.605589 GTGGTTCTCCCGGACAAAGG 60.606 60.000 0.73 0.00 35.15 3.11
2384 2597 4.435518 GCAAGCAAGCATGATTTTCACATG 60.436 41.667 0.00 0.00 45.19 3.21
2385 2598 3.682858 GCAAGCAAGCATGATTTTCACAT 59.317 39.130 0.00 0.00 31.54 3.21
2387 2600 3.122948 CAGCAAGCAAGCATGATTTTCAC 59.877 43.478 0.00 0.00 31.54 3.18
2388 2601 3.243941 ACAGCAAGCAAGCATGATTTTCA 60.244 39.130 0.00 0.00 31.54 2.69
2389 2602 3.323243 ACAGCAAGCAAGCATGATTTTC 58.677 40.909 0.00 0.00 31.54 2.29
2390 2603 3.323243 GACAGCAAGCAAGCATGATTTT 58.677 40.909 0.00 0.00 31.54 1.82
2391 2604 2.353406 GGACAGCAAGCAAGCATGATTT 60.353 45.455 0.00 0.00 31.54 2.17
2392 2605 1.203994 GGACAGCAAGCAAGCATGATT 59.796 47.619 0.00 0.00 35.01 2.57
2393 2606 0.815734 GGACAGCAAGCAAGCATGAT 59.184 50.000 0.00 0.00 36.85 2.45
2394 2607 0.537828 TGGACAGCAAGCAAGCATGA 60.538 50.000 0.00 0.00 36.85 3.07
2395 2608 0.109272 CTGGACAGCAAGCAAGCATG 60.109 55.000 3.19 0.00 36.85 4.06
2396 2609 0.538977 ACTGGACAGCAAGCAAGCAT 60.539 50.000 0.00 0.00 36.85 3.79
2397 2610 0.752743 AACTGGACAGCAAGCAAGCA 60.753 50.000 0.00 0.00 36.85 3.91
2399 2612 2.225019 CACTAACTGGACAGCAAGCAAG 59.775 50.000 0.00 0.00 0.00 4.01
2402 2615 1.884235 ACACTAACTGGACAGCAAGC 58.116 50.000 0.00 0.00 0.00 4.01
2404 2617 3.838317 AGGATACACTAACTGGACAGCAA 59.162 43.478 0.00 0.00 41.41 3.91
2406 2619 5.536916 AGATAGGATACACTAACTGGACAGC 59.463 44.000 0.00 0.00 41.41 4.40
2407 2620 6.773200 TCAGATAGGATACACTAACTGGACAG 59.227 42.308 9.59 0.00 41.49 3.51
2408 2621 6.669631 TCAGATAGGATACACTAACTGGACA 58.330 40.000 9.59 0.00 41.49 4.02
2410 2623 7.785028 ACATTCAGATAGGATACACTAACTGGA 59.215 37.037 9.59 3.17 41.49 3.86
2411 2624 7.957002 ACATTCAGATAGGATACACTAACTGG 58.043 38.462 9.59 0.00 41.49 4.00
2412 2625 9.469807 GAACATTCAGATAGGATACACTAACTG 57.530 37.037 0.00 0.00 42.11 3.16
2413 2626 9.201989 TGAACATTCAGATAGGATACACTAACT 57.798 33.333 0.00 0.00 33.35 2.24
2414 2627 9.988815 ATGAACATTCAGATAGGATACACTAAC 57.011 33.333 0.23 0.00 41.08 2.34
2416 2629 9.593565 AGATGAACATTCAGATAGGATACACTA 57.406 33.333 0.23 0.00 41.08 2.74
2417 2630 8.489676 AGATGAACATTCAGATAGGATACACT 57.510 34.615 0.23 0.00 41.08 3.55
2418 2631 7.540400 CGAGATGAACATTCAGATAGGATACAC 59.460 40.741 0.23 0.00 41.08 2.90
2419 2632 7.309438 CCGAGATGAACATTCAGATAGGATACA 60.309 40.741 0.23 0.00 41.08 2.29
2420 2633 7.032580 CCGAGATGAACATTCAGATAGGATAC 58.967 42.308 0.23 0.00 41.08 2.24
2421 2634 6.721668 ACCGAGATGAACATTCAGATAGGATA 59.278 38.462 12.15 0.00 41.08 2.59
2422 2635 5.541868 ACCGAGATGAACATTCAGATAGGAT 59.458 40.000 12.15 0.00 41.08 3.24
2423 2636 4.895889 ACCGAGATGAACATTCAGATAGGA 59.104 41.667 12.15 0.00 41.08 2.94
2424 2637 5.207110 ACCGAGATGAACATTCAGATAGG 57.793 43.478 0.23 4.03 41.08 2.57
2425 2638 5.689514 GTGACCGAGATGAACATTCAGATAG 59.310 44.000 0.23 0.00 41.08 2.08
2426 2639 5.451937 GGTGACCGAGATGAACATTCAGATA 60.452 44.000 0.23 0.00 41.08 1.98
2445 2658 5.812642 CCATCACAGTTAGACATAAGGTGAC 59.187 44.000 0.00 0.00 38.34 3.67
2479 2757 3.114616 CTTCCTCTGCACGCGTGG 61.115 66.667 37.47 23.44 0.00 4.94
2480 2758 3.782244 GCTTCCTCTGCACGCGTG 61.782 66.667 34.01 34.01 0.00 5.34
2481 2759 3.996124 AGCTTCCTCTGCACGCGT 61.996 61.111 5.58 5.58 0.00 6.01
2482 2760 3.485431 CAGCTTCCTCTGCACGCG 61.485 66.667 3.53 3.53 0.00 6.01
2673 2953 2.822399 CCGGCGGGCTAGAAGAAT 59.178 61.111 20.56 0.00 0.00 2.40
2693 2973 3.024547 CGTAGGATTCTCCAGTTGAGGA 58.975 50.000 0.00 0.00 41.76 3.71
2702 2991 6.674760 GCAAAAACACATACGTAGGATTCTCC 60.675 42.308 15.09 0.00 36.58 3.71
2703 2992 6.248631 GCAAAAACACATACGTAGGATTCTC 58.751 40.000 15.09 0.00 0.00 2.87
2704 2993 5.123344 GGCAAAAACACATACGTAGGATTCT 59.877 40.000 15.09 0.00 0.00 2.40
2711 3000 6.642430 ACCTATAGGCAAAAACACATACGTA 58.358 36.000 19.25 0.00 39.32 3.57
2712 3001 5.493809 ACCTATAGGCAAAAACACATACGT 58.506 37.500 19.25 0.00 39.32 3.57
2713 3002 5.276678 CGACCTATAGGCAAAAACACATACG 60.277 44.000 19.25 2.96 39.32 3.06
2714 3003 5.583457 ACGACCTATAGGCAAAAACACATAC 59.417 40.000 19.25 0.00 39.32 2.39
2732 3021 1.005394 CACACGCCCTTTACGACCT 60.005 57.895 0.00 0.00 0.00 3.85
2736 3025 2.860293 CAGCACACGCCCTTTACG 59.140 61.111 0.00 0.00 39.83 3.18
2768 3073 5.477637 TCCTTTTTACAATTAGGTTTCCCGG 59.522 40.000 0.00 0.00 35.12 5.73
2841 3154 0.806102 CCACCGTGTGATCCGTGATC 60.806 60.000 5.71 6.87 39.31 2.92
2847 3160 4.760047 AGCGCCACCGTGTGATCC 62.760 66.667 2.29 0.00 35.23 3.36
2890 3204 4.916983 TTCCATCTTCACACCAGTTTTG 57.083 40.909 0.00 0.00 0.00 2.44
2905 3219 5.105797 TGGCAAACACACTATTCATTCCATC 60.106 40.000 0.00 0.00 0.00 3.51
2953 3267 4.216042 CCAGCAGTGTCACATATGAACAAA 59.784 41.667 10.38 0.00 36.31 2.83
3009 3323 8.391859 CGACGACTTTCAGCTAGATATATACAT 58.608 37.037 0.00 0.00 0.00 2.29
3010 3324 7.387122 ACGACGACTTTCAGCTAGATATATACA 59.613 37.037 0.00 0.00 0.00 2.29
3011 3325 7.688989 CACGACGACTTTCAGCTAGATATATAC 59.311 40.741 0.00 0.00 0.00 1.47
3015 3333 4.261238 CCACGACGACTTTCAGCTAGATAT 60.261 45.833 0.00 0.00 0.00 1.63
3031 3349 1.069378 GCGTTAGAAGGACCACGACG 61.069 60.000 5.55 9.73 34.49 5.12
3032 3350 0.735287 GGCGTTAGAAGGACCACGAC 60.735 60.000 5.55 0.00 34.49 4.34
3035 3353 2.429610 TGATAGGCGTTAGAAGGACCAC 59.570 50.000 0.00 0.00 0.00 4.16
3044 3362 4.098044 TGGTTCTCTCTTGATAGGCGTTAG 59.902 45.833 0.00 0.00 0.00 2.34
3057 3375 3.281727 TGCAACTTGTTGGTTCTCTCT 57.718 42.857 14.30 0.00 0.00 3.10
3064 3382 2.548493 GCCATTGATGCAACTTGTTGGT 60.548 45.455 14.30 0.00 0.00 3.67
3065 3383 2.070783 GCCATTGATGCAACTTGTTGG 58.929 47.619 14.30 0.00 0.00 3.77
3066 3384 2.734606 CAGCCATTGATGCAACTTGTTG 59.265 45.455 8.95 8.95 0.00 3.33
3067 3385 2.629137 TCAGCCATTGATGCAACTTGTT 59.371 40.909 0.00 0.00 0.00 2.83
3068 3386 2.241160 TCAGCCATTGATGCAACTTGT 58.759 42.857 0.00 0.00 0.00 3.16
3069 3387 3.520290 ATCAGCCATTGATGCAACTTG 57.480 42.857 0.00 0.00 44.84 3.16
3088 3411 2.353803 GGCAAGTAACAGTCGTCTCCAT 60.354 50.000 0.00 0.00 0.00 3.41
3108 3431 2.430704 ATCCTGGGTGTGTGCAAGGG 62.431 60.000 0.00 0.00 0.00 3.95
3109 3432 0.962356 GATCCTGGGTGTGTGCAAGG 60.962 60.000 0.00 0.00 0.00 3.61
3110 3433 0.250858 TGATCCTGGGTGTGTGCAAG 60.251 55.000 0.00 0.00 0.00 4.01
3111 3434 0.250858 CTGATCCTGGGTGTGTGCAA 60.251 55.000 0.00 0.00 0.00 4.08
3112 3435 1.376086 CTGATCCTGGGTGTGTGCA 59.624 57.895 0.00 0.00 0.00 4.57
3113 3436 1.377725 CCTGATCCTGGGTGTGTGC 60.378 63.158 0.00 0.00 0.00 4.57
3114 3437 1.377725 GCCTGATCCTGGGTGTGTG 60.378 63.158 0.00 0.00 0.00 3.82
3115 3438 1.426251 TTGCCTGATCCTGGGTGTGT 61.426 55.000 0.00 0.00 0.00 3.72
3135 3458 1.202927 ACAAGGGTGTGGGTCATCTTG 60.203 52.381 0.00 0.00 41.37 3.02
3148 3471 0.253610 TCGTTGGAACACACAAGGGT 59.746 50.000 0.00 0.00 39.29 4.34
3149 3472 1.333619 CTTCGTTGGAACACACAAGGG 59.666 52.381 0.00 0.00 39.29 3.95
3150 3473 2.031683 GTCTTCGTTGGAACACACAAGG 59.968 50.000 0.00 0.00 39.29 3.61
3151 3474 2.285602 CGTCTTCGTTGGAACACACAAG 60.286 50.000 0.00 0.00 39.29 3.16
3152 3475 1.661617 CGTCTTCGTTGGAACACACAA 59.338 47.619 0.00 0.00 39.29 3.33
3157 3480 1.595929 GGCCGTCTTCGTTGGAACA 60.596 57.895 0.00 0.00 35.01 3.18
3160 3483 0.896940 ACTAGGCCGTCTTCGTTGGA 60.897 55.000 0.00 0.00 35.01 3.53
3162 3485 1.792006 AAACTAGGCCGTCTTCGTTG 58.208 50.000 0.00 0.00 35.01 4.10
3163 3486 2.538512 AAAACTAGGCCGTCTTCGTT 57.461 45.000 0.00 0.00 35.01 3.85
3164 3487 2.224113 TGAAAAACTAGGCCGTCTTCGT 60.224 45.455 0.00 0.00 35.01 3.85
3165 3488 2.409975 TGAAAAACTAGGCCGTCTTCG 58.590 47.619 0.00 0.00 0.00 3.79
3166 3489 3.186613 CACTGAAAAACTAGGCCGTCTTC 59.813 47.826 0.00 0.00 0.00 2.87
3167 3490 3.139077 CACTGAAAAACTAGGCCGTCTT 58.861 45.455 0.00 0.00 0.00 3.01
3169 3492 1.804748 CCACTGAAAAACTAGGCCGTC 59.195 52.381 0.00 0.00 0.00 4.79
3175 3501 4.260620 CGTTGTCCACCACTGAAAAACTAG 60.261 45.833 0.00 0.00 0.00 2.57
3184 3510 1.523711 AGCACGTTGTCCACCACTG 60.524 57.895 0.00 0.00 0.00 3.66
3185 3511 1.523711 CAGCACGTTGTCCACCACT 60.524 57.895 0.00 0.00 0.00 4.00
3186 3512 3.022287 CAGCACGTTGTCCACCAC 58.978 61.111 0.00 0.00 0.00 4.16
3187 3513 2.899838 GCAGCACGTTGTCCACCA 60.900 61.111 0.00 0.00 0.00 4.17
3188 3514 3.660111 GGCAGCACGTTGTCCACC 61.660 66.667 0.00 0.00 0.00 4.61
3189 3515 3.660111 GGGCAGCACGTTGTCCAC 61.660 66.667 6.00 0.00 42.50 4.02
3192 3518 3.712881 GACGGGCAGCACGTTGTC 61.713 66.667 26.49 8.04 45.68 3.18
3215 3541 1.227999 ATTGGACACCGTGCACTTCG 61.228 55.000 16.19 1.09 32.77 3.79
3268 3597 6.321690 GGACTCTGTAGCTGGAAGACTAATAA 59.678 42.308 0.00 0.00 34.07 1.40
3285 3614 1.534235 AGCCAAGGTCGGACTCTGT 60.534 57.895 8.23 0.00 0.00 3.41
3304 3633 3.849145 TCAAGAACAGAAAACAAAACGCG 59.151 39.130 3.53 3.53 0.00 6.01
3312 3641 5.985530 CCCCAAAATCTCAAGAACAGAAAAC 59.014 40.000 0.00 0.00 0.00 2.43
3319 3648 5.482006 CCAAATCCCCAAAATCTCAAGAAC 58.518 41.667 0.00 0.00 0.00 3.01
3322 3651 3.516700 AGCCAAATCCCCAAAATCTCAAG 59.483 43.478 0.00 0.00 0.00 3.02
3335 3664 0.598065 AGACAACGCAAGCCAAATCC 59.402 50.000 0.00 0.00 45.62 3.01
3339 3668 0.380378 GTTCAGACAACGCAAGCCAA 59.620 50.000 0.00 0.00 45.62 4.52
3406 3752 0.941463 CATGATGCCTACTCGACGGC 60.941 60.000 8.33 8.33 46.46 5.68
3417 3763 0.533531 TCATCGCTCACCATGATGCC 60.534 55.000 0.00 0.00 39.42 4.40
3430 3776 3.567797 GCGCAGGTTCCTCATCGC 61.568 66.667 0.30 11.61 35.82 4.58
3536 3888 1.425428 GTCGCTTTCGCCATTCAGG 59.575 57.895 0.00 0.00 41.84 3.86
3574 3926 1.394618 CTCCCTCCCTCGTCTAGTTG 58.605 60.000 0.00 0.00 0.00 3.16
3576 3928 1.647334 CCCTCCCTCCCTCGTCTAGT 61.647 65.000 0.00 0.00 0.00 2.57
3577 3929 1.151908 CCCTCCCTCCCTCGTCTAG 59.848 68.421 0.00 0.00 0.00 2.43
3578 3930 0.701659 ATCCCTCCCTCCCTCGTCTA 60.702 60.000 0.00 0.00 0.00 2.59
3579 3931 2.015726 ATCCCTCCCTCCCTCGTCT 61.016 63.158 0.00 0.00 0.00 4.18
3580 3932 1.834822 CATCCCTCCCTCCCTCGTC 60.835 68.421 0.00 0.00 0.00 4.20
3582 3934 2.525381 CCATCCCTCCCTCCCTCG 60.525 72.222 0.00 0.00 0.00 4.63
3583 3935 2.122189 CCCATCCCTCCCTCCCTC 60.122 72.222 0.00 0.00 0.00 4.30
3586 3938 4.523282 AGGCCCATCCCTCCCTCC 62.523 72.222 0.00 0.00 34.51 4.30
3587 3939 2.368878 AAGGCCCATCCCTCCCTC 60.369 66.667 0.00 0.00 32.93 4.30
3589 3941 3.023735 ACAAGGCCCATCCCTCCC 61.024 66.667 0.00 0.00 32.93 4.30
3590 3942 2.003548 AGACAAGGCCCATCCCTCC 61.004 63.158 0.00 0.00 32.93 4.30
3591 3943 1.225704 CAGACAAGGCCCATCCCTC 59.774 63.158 0.00 0.00 32.93 4.30
3593 3945 2.276740 CCAGACAAGGCCCATCCC 59.723 66.667 0.00 0.00 34.51 3.85
3623 3975 1.960040 CTGATGCCTACAGCCACGGA 61.960 60.000 0.00 0.00 42.71 4.69
3624 3976 1.522355 CTGATGCCTACAGCCACGG 60.522 63.158 0.00 0.00 42.71 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.