Multiple sequence alignment - TraesCS5A01G464500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G464500 chr5A 100.000 3581 0 0 1 3581 643927451 643923871 0.000000e+00 6613.0
1 TraesCS5A01G464500 chr5A 97.409 386 8 2 3194 3579 643922860 643923243 0.000000e+00 656.0
2 TraesCS5A01G464500 chr5A 82.721 463 67 12 1385 1839 454704880 454705337 2.000000e-107 399.0
3 TraesCS5A01G464500 chr5D 92.640 2500 137 23 495 2971 515676416 515673941 0.000000e+00 3554.0
4 TraesCS5A01G464500 chr5D 95.844 385 13 2 3197 3579 447766840 447766457 1.410000e-173 619.0
5 TraesCS5A01G464500 chr5D 95.349 387 13 4 3197 3581 450115127 450114744 8.500000e-171 610.0
6 TraesCS5A01G464500 chr5D 82.759 464 65 14 1385 1839 353655444 353655901 2.000000e-107 399.0
7 TraesCS5A01G464500 chr5D 93.103 87 6 0 2969 3055 515673287 515673201 1.040000e-25 128.0
8 TraesCS5A01G464500 chr5D 84.466 103 10 6 339 438 385942456 385942357 2.940000e-16 97.1
9 TraesCS5A01G464500 chr5D 80.672 119 19 3 334 450 440780726 440780842 4.920000e-14 89.8
10 TraesCS5A01G464500 chr5B 91.329 2445 149 24 552 2970 648290750 648288343 0.000000e+00 3282.0
11 TraesCS5A01G464500 chr5B 90.888 2206 133 38 550 2698 648358061 648360255 0.000000e+00 2898.0
12 TraesCS5A01G464500 chr5B 96.104 385 10 4 3197 3579 305050774 305051155 1.090000e-174 623.0
13 TraesCS5A01G464500 chr5B 86.807 379 22 10 560 935 648742145 648741792 7.200000e-107 398.0
14 TraesCS5A01G464500 chr5B 82.675 456 66 12 1392 1839 417805214 417805664 3.350000e-105 392.0
15 TraesCS5A01G464500 chr5B 88.655 238 20 4 1 236 648746592 648746360 2.100000e-72 283.0
16 TraesCS5A01G464500 chr5B 91.304 207 12 4 31 235 648356489 648356691 9.790000e-71 278.0
17 TraesCS5A01G464500 chr5B 90.411 146 12 2 3046 3190 648287997 648287853 1.310000e-44 191.0
18 TraesCS5A01G464500 chr5B 92.727 110 8 0 371 480 648742968 648742859 3.700000e-35 159.0
19 TraesCS5A01G464500 chr3D 96.144 389 11 3 3193 3579 6342357 6341971 1.810000e-177 632.0
20 TraesCS5A01G464500 chr3D 82.569 109 15 2 76 184 606610647 606610751 3.810000e-15 93.5
21 TraesCS5A01G464500 chr6B 96.364 385 9 4 3197 3579 675225094 675225475 2.350000e-176 628.0
22 TraesCS5A01G464500 chr6B 82.418 91 16 0 334 424 36058571 36058661 2.960000e-11 80.5
23 TraesCS5A01G464500 chr4D 95.844 385 10 4 3197 3579 349818656 349819036 5.080000e-173 617.0
24 TraesCS5A01G464500 chr2B 95.607 387 14 2 3195 3579 747234963 747234578 5.080000e-173 617.0
25 TraesCS5A01G464500 chr2B 85.030 167 20 3 28 194 395532706 395532867 7.950000e-37 165.0
26 TraesCS5A01G464500 chr2B 79.464 112 18 4 339 447 402375135 402375244 1.380000e-09 75.0
27 TraesCS5A01G464500 chr1B 95.385 390 11 6 3193 3579 31093891 31094276 6.570000e-172 614.0
28 TraesCS5A01G464500 chr7B 83.000 400 64 4 1418 1815 522142132 522142529 3.400000e-95 359.0
29 TraesCS5A01G464500 chr7D 81.776 428 73 5 1392 1815 493203714 493204140 1.580000e-93 353.0
30 TraesCS5A01G464500 chr7A 81.422 436 76 5 1385 1816 559361807 559362241 5.690000e-93 351.0
31 TraesCS5A01G464500 chr4B 84.274 248 39 0 1902 2149 568736644 568736891 3.570000e-60 243.0
32 TraesCS5A01G464500 chr4B 78.916 166 31 2 25 190 543328123 543327962 3.780000e-20 110.0
33 TraesCS5A01G464500 chr3B 87.500 168 15 4 27 194 815388398 815388237 4.720000e-44 189.0
34 TraesCS5A01G464500 chr2D 85.030 167 20 3 28 194 326206739 326206900 7.950000e-37 165.0
35 TraesCS5A01G464500 chr2D 79.464 112 18 4 339 447 334098435 334098544 1.380000e-09 75.0
36 TraesCS5A01G464500 chr2A 84.706 170 21 3 28 197 391901885 391901721 7.950000e-37 165.0
37 TraesCS5A01G464500 chr2A 79.464 112 18 4 339 447 444796303 444796412 1.380000e-09 75.0
38 TraesCS5A01G464500 chr3A 83.178 107 17 1 76 182 737443136 737443241 2.940000e-16 97.1
39 TraesCS5A01G464500 chr3A 83.495 103 13 3 339 439 497947186 497947286 3.810000e-15 93.5
40 TraesCS5A01G464500 chr4A 92.593 54 4 0 339 392 703763245 703763298 1.070000e-10 78.7
41 TraesCS5A01G464500 chr1A 80.851 94 17 1 336 429 295368276 295368368 4.960000e-09 73.1
42 TraesCS5A01G464500 chrUn 86.885 61 8 0 612 672 285885646 285885706 6.420000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G464500 chr5A 643923871 643927451 3580 True 6613.0 6613 100.000000 1 3581 1 chr5A.!!$R1 3580
1 TraesCS5A01G464500 chr5D 515673201 515676416 3215 True 1841.0 3554 92.871500 495 3055 2 chr5D.!!$R4 2560
2 TraesCS5A01G464500 chr5B 648287853 648290750 2897 True 1736.5 3282 90.870000 552 3190 2 chr5B.!!$R1 2638
3 TraesCS5A01G464500 chr5B 648356489 648360255 3766 False 1588.0 2898 91.096000 31 2698 2 chr5B.!!$F3 2667
4 TraesCS5A01G464500 chr5B 648741792 648746592 4800 True 280.0 398 89.396333 1 935 3 chr5B.!!$R2 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 3808 0.890996 CTCCTCCAACTGCACCCAAC 60.891 60.0 0.0 0.0 0.0 3.77 F
2200 6762 0.671163 TCGCATCAAACGTACCCCAC 60.671 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 6835 0.534412 CGGTGATCTCCTGCTTCAGT 59.466 55.0 11.86 0.0 0.0 3.41 R
3293 8539 0.034186 TGGAATTCAATCGGCCTGCT 60.034 50.0 7.93 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.590850 AAAGACTTTGAAGTGCATTCCC 57.409 40.909 0.00 0.00 39.88 3.97
83 84 8.862550 ATTGTCTGAATTCAAACTCTTCAAAC 57.137 30.769 12.92 0.00 0.00 2.93
337 338 4.645809 GCTAAGAAGCCCCTGGTG 57.354 61.111 0.00 0.00 43.40 4.17
428 3756 8.348983 TCTAACACAGAGAGTAAAAAGAAACG 57.651 34.615 0.00 0.00 0.00 3.60
431 3759 6.110707 ACACAGAGAGTAAAAAGAAACGGAA 58.889 36.000 0.00 0.00 0.00 4.30
438 3766 7.677892 AGAGTAAAAAGAAACGGAAGGAGTAT 58.322 34.615 0.00 0.00 0.00 2.12
480 3808 0.890996 CTCCTCCAACTGCACCCAAC 60.891 60.000 0.00 0.00 0.00 3.77
481 3809 1.151450 CCTCCAACTGCACCCAACT 59.849 57.895 0.00 0.00 0.00 3.16
482 3810 1.174712 CCTCCAACTGCACCCAACTG 61.175 60.000 0.00 0.00 0.00 3.16
484 3812 2.126596 CCAACTGCACCCAACTGCA 61.127 57.895 0.00 0.00 45.06 4.41
486 3814 2.127232 AACTGCACCCAACTGCACC 61.127 57.895 0.00 0.00 42.36 5.01
487 3815 3.297620 CTGCACCCAACTGCACCC 61.298 66.667 0.00 0.00 42.36 4.61
488 3816 3.797507 CTGCACCCAACTGCACCCT 62.798 63.158 0.00 0.00 42.36 4.34
489 3817 2.985847 GCACCCAACTGCACCCTC 60.986 66.667 0.00 0.00 37.11 4.30
490 3818 2.669569 CACCCAACTGCACCCTCG 60.670 66.667 0.00 0.00 0.00 4.63
491 3819 4.643387 ACCCAACTGCACCCTCGC 62.643 66.667 0.00 0.00 0.00 5.03
599 5101 4.326009 CACCTTGTACACACAAAAACAAGC 59.674 41.667 0.00 0.00 44.72 4.01
609 5111 2.693074 ACAAAAACAAGCCAATCGAGGT 59.307 40.909 0.00 0.00 0.00 3.85
719 5224 3.230976 GGTTTTCCTGGTTGGACTCAAT 58.769 45.455 0.00 0.00 46.14 2.57
846 5365 8.331730 ACGGCAGTAATTAATAGACAAAACTT 57.668 30.769 0.00 0.00 0.00 2.66
956 5476 8.476447 GTTTTTACTAGGCACCTACTAATCTCT 58.524 37.037 0.00 0.00 0.00 3.10
991 5512 5.914033 ACCTATAAATACAAGCGAGCTCAA 58.086 37.500 15.40 0.00 0.00 3.02
1011 5533 0.681175 GCATTGCCAAACCAAGGAGT 59.319 50.000 0.00 0.00 0.00 3.85
1047 5569 5.130145 CAGGAGTCCAGATTTCATAGGAAGT 59.870 44.000 12.86 0.00 33.82 3.01
1081 5605 1.759445 ACTGCAGACTGTAGCTATGGG 59.241 52.381 23.35 0.00 33.13 4.00
1204 5728 4.151157 GCATCTTCAAGTTTCATTTGCACC 59.849 41.667 0.00 0.00 0.00 5.01
1242 5804 5.049167 TGATGAAATGTGCTTTGGTGTTTC 58.951 37.500 0.00 0.00 0.00 2.78
1320 5882 1.301293 GCAAGGGAAGGTGGAGGAG 59.699 63.158 0.00 0.00 0.00 3.69
1855 6417 1.516603 GTTGGCGAGCTCTACGACC 60.517 63.158 12.85 5.95 38.06 4.79
1950 6512 2.579738 GTTCTCCAGGAGGCCGTC 59.420 66.667 17.10 0.00 33.74 4.79
2160 6722 4.637091 TGCATCGTAAGTAGTAGCACACTA 59.363 41.667 0.00 0.00 38.80 2.74
2183 6745 4.215399 ACACAACCTCACCATAACATTTCG 59.785 41.667 0.00 0.00 0.00 3.46
2194 6756 5.122554 ACCATAACATTTCGCATCAAACGTA 59.877 36.000 0.00 0.00 0.00 3.57
2200 6762 0.671163 TCGCATCAAACGTACCCCAC 60.671 55.000 0.00 0.00 0.00 4.61
2220 6782 4.214119 CCACGATGTTTGTGATCTGAACTT 59.786 41.667 0.00 0.00 39.73 2.66
2273 6835 2.489971 GACCATGTGTTCGACTGGAAA 58.510 47.619 0.00 0.00 36.14 3.13
2302 6864 0.528684 GAGATCACCGCACTGGCTAC 60.529 60.000 0.00 0.00 43.94 3.58
2430 6992 3.186409 CGGGTCAAGATACAATATTGGCG 59.814 47.826 19.37 1.83 36.98 5.69
2480 7042 3.420893 TGCAGCTAAAGGCAACAACTAT 58.579 40.909 0.00 0.00 44.79 2.12
2498 7060 2.777832 ATTGTGTCTGGGAGAAGAGC 57.222 50.000 0.00 0.00 0.00 4.09
2517 7079 1.811558 GCGGCCTCTGAATTCATGCTA 60.812 52.381 8.96 0.00 0.00 3.49
2529 7091 7.281774 TCTGAATTCATGCTAGTGAAAGGAATC 59.718 37.037 8.96 0.00 41.09 2.52
2530 7092 5.998454 ATTCATGCTAGTGAAAGGAATCG 57.002 39.130 0.38 0.00 41.09 3.34
2633 7199 9.559958 CTGTCCTATGAAAATAATTGAACACAC 57.440 33.333 0.00 0.00 0.00 3.82
2680 7254 7.722949 AATGTGGGTTGACTGATATTTCAAT 57.277 32.000 0.00 0.00 34.34 2.57
2693 7267 7.065085 ACTGATATTTCAATCCTTGACGACTTG 59.935 37.037 0.00 0.00 39.87 3.16
2698 7272 2.743664 CAATCCTTGACGACTTGCATGA 59.256 45.455 6.60 0.00 0.00 3.07
2702 7276 2.158449 CCTTGACGACTTGCATGAGTTC 59.842 50.000 6.60 0.00 0.00 3.01
2713 7287 7.197071 ACTTGCATGAGTTCGTTTTGTATTA 57.803 32.000 6.60 0.00 0.00 0.98
2722 7296 6.599437 AGTTCGTTTTGTATTAGTCATGCAC 58.401 36.000 0.00 0.00 0.00 4.57
2762 7336 0.753479 TTTGTGTGCGTGGGACCATT 60.753 50.000 0.00 0.00 0.00 3.16
2785 7359 1.177895 TGATGGCGGTTGTGTGCATT 61.178 50.000 0.00 0.00 0.00 3.56
2790 7364 1.472480 GGCGGTTGTGTGCATTCTAAT 59.528 47.619 0.00 0.00 0.00 1.73
2795 7369 4.734854 CGGTTGTGTGCATTCTAATTATGC 59.265 41.667 4.95 4.95 46.63 3.14
2803 7377 4.253685 GCATTCTAATTATGCGGAGGCTA 58.746 43.478 0.00 0.00 39.02 3.93
2809 7383 6.424032 TCTAATTATGCGGAGGCTAGATAGA 58.576 40.000 0.00 0.00 40.82 1.98
2857 7447 6.349300 AGTCAAATAGCGTGTCCTTTATCAT 58.651 36.000 0.00 0.00 0.00 2.45
2859 7449 6.257849 GTCAAATAGCGTGTCCTTTATCATGA 59.742 38.462 0.00 0.00 0.00 3.07
2918 7508 4.556697 TCCACCTCTGATCCTTATTAGCA 58.443 43.478 0.00 0.00 0.00 3.49
2928 7518 3.577919 TCCTTATTAGCACTCCTCTCCC 58.422 50.000 0.00 0.00 0.00 4.30
2943 7533 0.396417 CTCCCGTGACCTCTCATCCT 60.396 60.000 0.00 0.00 0.00 3.24
2947 7537 1.405821 CCGTGACCTCTCATCCTACAC 59.594 57.143 0.00 0.00 0.00 2.90
2953 7543 3.370104 ACCTCTCATCCTACACCTTCTG 58.630 50.000 0.00 0.00 0.00 3.02
2961 7551 3.719871 TCCTACACCTTCTGCTAATCCA 58.280 45.455 0.00 0.00 0.00 3.41
2971 7561 0.396435 TGCTAATCCACCCTATGCCG 59.604 55.000 0.00 0.00 0.00 5.69
2972 7562 0.685097 GCTAATCCACCCTATGCCGA 59.315 55.000 0.00 0.00 0.00 5.54
2973 7563 1.071699 GCTAATCCACCCTATGCCGAA 59.928 52.381 0.00 0.00 0.00 4.30
2974 7564 2.767505 CTAATCCACCCTATGCCGAAC 58.232 52.381 0.00 0.00 0.00 3.95
2975 7565 0.916086 AATCCACCCTATGCCGAACA 59.084 50.000 0.00 0.00 0.00 3.18
2977 7567 0.916086 TCCACCCTATGCCGAACAAT 59.084 50.000 0.00 0.00 0.00 2.71
2984 8230 4.133820 CCCTATGCCGAACAATACAATCA 58.866 43.478 0.00 0.00 0.00 2.57
2990 8236 4.759693 TGCCGAACAATACAATCAACTCTT 59.240 37.500 0.00 0.00 0.00 2.85
2995 8241 6.575162 AACAATACAATCAACTCTTCCCAC 57.425 37.500 0.00 0.00 0.00 4.61
2997 8243 2.930826 ACAATCAACTCTTCCCACGT 57.069 45.000 0.00 0.00 0.00 4.49
3019 8265 2.829720 AGCATTGCTCAAATCCACACAT 59.170 40.909 5.03 0.00 30.62 3.21
3055 8301 1.252904 GGCCTGCATCACCACAACAT 61.253 55.000 0.00 0.00 0.00 2.71
3056 8302 0.108992 GCCTGCATCACCACAACATG 60.109 55.000 0.00 0.00 0.00 3.21
3063 8309 0.392706 TCACCACAACATGTCGAGCT 59.607 50.000 0.00 0.00 0.00 4.09
3076 8322 2.091112 CGAGCTCACAAGGCAGACG 61.091 63.158 15.40 0.00 0.00 4.18
3099 8345 7.083858 ACGAACATAACATCACCATGAAAAAG 58.916 34.615 0.00 0.00 33.72 2.27
3104 8350 5.612725 AACATCACCATGAAAAAGGTTGT 57.387 34.783 0.00 0.00 35.52 3.32
3106 8352 3.980646 TCACCATGAAAAAGGTTGTCG 57.019 42.857 0.00 0.00 35.52 4.35
3108 8354 1.001815 ACCATGAAAAAGGTTGTCGCG 60.002 47.619 0.00 0.00 33.39 5.87
3132 8378 2.774799 GCCAACGGGGTGCATGATC 61.775 63.158 0.00 0.00 39.65 2.92
3162 8408 5.240183 GTGCCTTCAACATGCTCACATATAT 59.760 40.000 0.00 0.00 33.67 0.86
3171 8417 3.052329 TGCTCACATATATCCCCCACAA 58.948 45.455 0.00 0.00 0.00 3.33
3258 8504 8.455598 AAAATTCAAAATTAATACACCGTCGG 57.544 30.769 10.48 10.48 0.00 4.79
3259 8505 4.603231 TCAAAATTAATACACCGTCGGC 57.397 40.909 12.28 0.00 0.00 5.54
3260 8506 3.374678 TCAAAATTAATACACCGTCGGCC 59.625 43.478 12.28 0.00 0.00 6.13
3261 8507 1.957668 AATTAATACACCGTCGGCCC 58.042 50.000 12.28 0.00 0.00 5.80
3262 8508 0.249573 ATTAATACACCGTCGGCCCG 60.250 55.000 12.28 0.00 0.00 6.13
3263 8509 2.904470 TTAATACACCGTCGGCCCGC 62.904 60.000 12.28 0.00 0.00 6.13
3285 8531 3.208335 GGCCGACTGGGACTAGTC 58.792 66.667 14.87 14.87 42.52 2.59
3289 8535 3.208335 GACTGGGACTAGTCGGCC 58.792 66.667 16.56 13.21 37.88 6.13
3290 8536 2.363925 ACTGGGACTAGTCGGCCC 60.364 66.667 16.56 13.41 42.38 5.80
3292 8538 2.682494 TGGGACTAGTCGGCCCAC 60.682 66.667 15.26 0.00 46.57 4.61
3293 8539 2.682494 GGGACTAGTCGGCCCACA 60.682 66.667 16.56 0.00 41.64 4.17
3294 8540 2.722201 GGGACTAGTCGGCCCACAG 61.722 68.421 16.56 0.90 41.64 3.66
3295 8541 2.184579 GACTAGTCGGCCCACAGC 59.815 66.667 7.22 0.00 42.60 4.40
3296 8542 2.603473 ACTAGTCGGCCCACAGCA 60.603 61.111 2.46 0.00 46.50 4.41
3297 8543 2.185350 CTAGTCGGCCCACAGCAG 59.815 66.667 2.46 0.00 46.50 4.24
3298 8544 3.376935 CTAGTCGGCCCACAGCAGG 62.377 68.421 2.46 0.00 46.50 4.85
3305 8551 3.136123 CCCACAGCAGGCCGATTG 61.136 66.667 0.00 0.00 0.00 2.67
3306 8552 2.046023 CCACAGCAGGCCGATTGA 60.046 61.111 9.88 0.00 0.00 2.57
3307 8553 1.675310 CCACAGCAGGCCGATTGAA 60.675 57.895 9.88 0.00 0.00 2.69
3308 8554 1.033746 CCACAGCAGGCCGATTGAAT 61.034 55.000 9.88 0.00 0.00 2.57
3309 8555 0.813184 CACAGCAGGCCGATTGAATT 59.187 50.000 9.88 0.00 0.00 2.17
3310 8556 1.098050 ACAGCAGGCCGATTGAATTC 58.902 50.000 9.88 0.00 0.00 2.17
3311 8557 0.383231 CAGCAGGCCGATTGAATTCC 59.617 55.000 2.27 0.00 0.00 3.01
3312 8558 0.034186 AGCAGGCCGATTGAATTCCA 60.034 50.000 2.27 0.00 0.00 3.53
3313 8559 0.383231 GCAGGCCGATTGAATTCCAG 59.617 55.000 2.27 0.00 0.00 3.86
3314 8560 1.755179 CAGGCCGATTGAATTCCAGT 58.245 50.000 2.27 0.00 0.00 4.00
3315 8561 1.672881 CAGGCCGATTGAATTCCAGTC 59.327 52.381 2.27 0.00 0.00 3.51
3319 8565 0.657840 CGATTGAATTCCAGTCGGCC 59.342 55.000 2.27 0.00 46.88 6.13
3320 8566 1.743772 CGATTGAATTCCAGTCGGCCT 60.744 52.381 0.00 0.00 46.88 5.19
3321 8567 2.483013 CGATTGAATTCCAGTCGGCCTA 60.483 50.000 0.00 0.00 46.88 3.93
3322 8568 2.396590 TTGAATTCCAGTCGGCCTAC 57.603 50.000 0.00 0.00 0.00 3.18
3323 8569 1.271856 TGAATTCCAGTCGGCCTACA 58.728 50.000 10.45 0.00 0.00 2.74
3324 8570 1.207089 TGAATTCCAGTCGGCCTACAG 59.793 52.381 10.45 0.99 0.00 2.74
3325 8571 0.107654 AATTCCAGTCGGCCTACAGC 60.108 55.000 10.45 0.00 42.60 4.40
3326 8572 0.978146 ATTCCAGTCGGCCTACAGCT 60.978 55.000 10.45 0.00 43.05 4.24
3334 8580 3.775654 GCCTACAGCTGGCCGACT 61.776 66.667 19.93 0.00 44.32 4.18
3335 8581 2.185350 CCTACAGCTGGCCGACTG 59.815 66.667 19.93 20.22 39.86 3.51
3336 8582 2.185350 CTACAGCTGGCCGACTGG 59.815 66.667 24.17 7.92 38.25 4.00
3354 8600 2.768344 CCCCTGTCGGCCCACTAT 60.768 66.667 1.09 0.00 0.00 2.12
3355 8601 2.505982 CCCTGTCGGCCCACTATG 59.494 66.667 1.09 0.00 0.00 2.23
3356 8602 2.505982 CCTGTCGGCCCACTATGG 59.494 66.667 1.09 0.00 37.25 2.74
3367 8613 2.425143 CCACTATGGGCTGATTGTGT 57.575 50.000 9.39 0.00 32.67 3.72
3368 8614 2.292267 CCACTATGGGCTGATTGTGTC 58.708 52.381 9.39 0.00 32.67 3.67
3369 8615 2.292267 CACTATGGGCTGATTGTGTCC 58.708 52.381 0.00 0.00 0.00 4.02
3370 8616 2.092753 CACTATGGGCTGATTGTGTCCT 60.093 50.000 0.00 0.00 0.00 3.85
3371 8617 2.092753 ACTATGGGCTGATTGTGTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
3372 8618 0.700564 ATGGGCTGATTGTGTCCTGT 59.299 50.000 0.00 0.00 0.00 4.00
3373 8619 0.036732 TGGGCTGATTGTGTCCTGTC 59.963 55.000 0.00 0.00 0.00 3.51
3374 8620 1.021390 GGGCTGATTGTGTCCTGTCG 61.021 60.000 0.00 0.00 0.00 4.35
3375 8621 1.021390 GGCTGATTGTGTCCTGTCGG 61.021 60.000 0.00 0.00 0.00 4.79
3376 8622 1.639298 GCTGATTGTGTCCTGTCGGC 61.639 60.000 0.00 0.00 36.01 5.54
3377 8623 1.003839 TGATTGTGTCCTGTCGGCC 60.004 57.895 0.00 0.00 0.00 6.13
3378 8624 1.745489 GATTGTGTCCTGTCGGCCC 60.745 63.158 0.00 0.00 0.00 5.80
3379 8625 2.463589 GATTGTGTCCTGTCGGCCCA 62.464 60.000 0.00 0.00 0.00 5.36
3380 8626 2.748058 ATTGTGTCCTGTCGGCCCAC 62.748 60.000 0.00 0.00 34.42 4.61
3381 8627 3.626924 GTGTCCTGTCGGCCCACT 61.627 66.667 1.09 0.00 32.42 4.00
3382 8628 3.625897 TGTCCTGTCGGCCCACTG 61.626 66.667 1.09 0.59 0.00 3.66
3383 8629 3.626924 GTCCTGTCGGCCCACTGT 61.627 66.667 1.09 0.00 0.00 3.55
3384 8630 3.625897 TCCTGTCGGCCCACTGTG 61.626 66.667 1.09 0.00 0.00 3.66
3385 8631 4.704833 CCTGTCGGCCCACTGTGG 62.705 72.222 20.01 20.01 37.25 4.17
3394 8640 4.704833 CCACTGTGGGCCGACTGG 62.705 72.222 24.80 18.26 32.67 4.00
3395 8641 3.625897 CACTGTGGGCCGACTGGA 61.626 66.667 24.80 3.18 37.49 3.86
3396 8642 3.314331 ACTGTGGGCCGACTGGAG 61.314 66.667 24.80 14.43 37.49 3.86
3397 8643 4.767255 CTGTGGGCCGACTGGAGC 62.767 72.222 19.42 0.00 37.49 4.70
3399 8645 3.075005 GTGGGCCGACTGGAGCTA 61.075 66.667 11.17 0.00 37.49 3.32
3400 8646 2.284331 TGGGCCGACTGGAGCTAA 60.284 61.111 0.00 0.00 37.49 3.09
3401 8647 1.689233 TGGGCCGACTGGAGCTAAT 60.689 57.895 0.00 0.00 37.49 1.73
3402 8648 1.271840 TGGGCCGACTGGAGCTAATT 61.272 55.000 0.00 0.00 37.49 1.40
3403 8649 0.815615 GGGCCGACTGGAGCTAATTG 60.816 60.000 0.00 0.00 37.49 2.32
3404 8650 0.815615 GGCCGACTGGAGCTAATTGG 60.816 60.000 0.00 0.00 37.49 3.16
3405 8651 1.440145 GCCGACTGGAGCTAATTGGC 61.440 60.000 5.52 5.52 37.49 4.52
3406 8652 0.179000 CCGACTGGAGCTAATTGGCT 59.821 55.000 17.07 17.07 46.11 4.75
3413 8659 2.772739 AGCTAATTGGCTCGCTGTG 58.227 52.632 10.99 0.00 38.24 3.66
3414 8660 0.745845 AGCTAATTGGCTCGCTGTGG 60.746 55.000 10.99 0.00 38.24 4.17
3415 8661 1.718757 GCTAATTGGCTCGCTGTGGG 61.719 60.000 6.53 0.00 0.00 4.61
3416 8662 1.718757 CTAATTGGCTCGCTGTGGGC 61.719 60.000 4.05 4.05 37.64 5.36
3417 8663 2.196997 TAATTGGCTCGCTGTGGGCT 62.197 55.000 13.44 0.00 39.13 5.19
3418 8664 2.196997 AATTGGCTCGCTGTGGGCTA 62.197 55.000 13.44 3.56 39.13 3.93
3419 8665 2.196997 ATTGGCTCGCTGTGGGCTAA 62.197 55.000 14.26 14.26 39.13 3.09
3420 8666 2.190578 GGCTCGCTGTGGGCTAAT 59.809 61.111 13.44 0.00 39.13 1.73
3421 8667 1.452108 GGCTCGCTGTGGGCTAATT 60.452 57.895 13.44 0.00 39.13 1.40
3422 8668 1.718757 GGCTCGCTGTGGGCTAATTG 61.719 60.000 13.44 0.00 39.13 2.32
3423 8669 1.026718 GCTCGCTGTGGGCTAATTGT 61.027 55.000 5.68 0.00 39.13 2.71
3424 8670 1.453155 CTCGCTGTGGGCTAATTGTT 58.547 50.000 0.00 0.00 39.13 2.83
3425 8671 1.812571 CTCGCTGTGGGCTAATTGTTT 59.187 47.619 0.00 0.00 39.13 2.83
3426 8672 2.228822 CTCGCTGTGGGCTAATTGTTTT 59.771 45.455 0.00 0.00 39.13 2.43
3427 8673 2.625790 TCGCTGTGGGCTAATTGTTTTT 59.374 40.909 0.00 0.00 39.13 1.94
3428 8674 2.730928 CGCTGTGGGCTAATTGTTTTTG 59.269 45.455 0.00 0.00 39.13 2.44
3429 8675 2.480037 GCTGTGGGCTAATTGTTTTTGC 59.520 45.455 0.00 0.00 38.06 3.68
3430 8676 3.726607 CTGTGGGCTAATTGTTTTTGCA 58.273 40.909 0.00 0.00 0.00 4.08
3431 8677 4.125703 CTGTGGGCTAATTGTTTTTGCAA 58.874 39.130 0.00 0.00 0.00 4.08
3432 8678 4.517285 TGTGGGCTAATTGTTTTTGCAAA 58.483 34.783 8.05 8.05 31.63 3.68
3433 8679 4.943705 TGTGGGCTAATTGTTTTTGCAAAA 59.056 33.333 20.46 20.46 31.63 2.44
3434 8680 5.415701 TGTGGGCTAATTGTTTTTGCAAAAA 59.584 32.000 28.85 28.85 35.67 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.072131 TGTAGGGAATGCACTTCAAAGTC 58.928 43.478 0.00 0.00 37.08 3.01
25 26 5.944007 GCAGAGTAAAAGGAAATGTAGGGAA 59.056 40.000 0.00 0.00 0.00 3.97
29 30 7.772332 ATACGCAGAGTAAAAGGAAATGTAG 57.228 36.000 0.00 0.00 39.04 2.74
302 303 9.129532 CTTCTTAGCCCATCATCTTCTTTAATT 57.870 33.333 0.00 0.00 0.00 1.40
321 322 1.073923 ACAACACCAGGGGCTTCTTAG 59.926 52.381 0.00 0.00 0.00 2.18
408 3736 6.292919 CCTTCCGTTTCTTTTTACTCTCTGTG 60.293 42.308 0.00 0.00 0.00 3.66
412 3740 5.990386 ACTCCTTCCGTTTCTTTTTACTCTC 59.010 40.000 0.00 0.00 0.00 3.20
438 3766 5.710984 GCGGCTGCTAGAACTCTTATTATA 58.289 41.667 11.21 0.00 38.39 0.98
444 3772 4.921834 GCGGCTGCTAGAACTCTT 57.078 55.556 11.21 0.00 38.39 2.85
572 5074 1.961793 TTGTGTGTACAAGGTGAGGC 58.038 50.000 0.00 0.00 41.66 4.70
682 5184 1.530013 AACCCGGTCGAATCAGACGT 61.530 55.000 0.00 0.00 41.81 4.34
719 5224 2.600790 TCTTTAAGTCTGGTGGACCGA 58.399 47.619 0.00 0.00 45.54 4.69
837 5356 7.631717 ATGGATTAGGAGCTAAAGTTTTGTC 57.368 36.000 0.00 0.00 29.35 3.18
846 5365 9.159254 TCTGAGATAAAATGGATTAGGAGCTAA 57.841 33.333 0.00 0.00 0.00 3.09
855 5374 5.301298 GCTGGCTTCTGAGATAAAATGGATT 59.699 40.000 0.00 0.00 0.00 3.01
991 5512 0.971386 CTCCTTGGTTTGGCAATGCT 59.029 50.000 4.82 0.00 0.00 3.79
1000 5521 1.271656 CCGACGACTACTCCTTGGTTT 59.728 52.381 0.00 0.00 0.00 3.27
1011 5533 0.392193 GACTCCTGGACCGACGACTA 60.392 60.000 0.00 0.00 0.00 2.59
1047 5569 2.888111 CAGTGCAGCTCGCCTCTA 59.112 61.111 5.82 0.00 41.33 2.43
1094 5618 1.203187 ACCAGAAGGCCACAGAGAGTA 60.203 52.381 5.01 0.00 39.06 2.59
1242 5804 1.067213 CAATTAAACCCCTGGCCAACG 60.067 52.381 7.01 0.00 0.00 4.10
1468 6030 1.291877 ACGCACGAGATGTTCTTGCC 61.292 55.000 0.00 0.00 45.51 4.52
1855 6417 4.803426 GAGCAGCTGTCGGTCCCG 62.803 72.222 16.64 0.00 41.35 5.14
1999 6561 1.152694 CCGGCATCCACCCAATCAT 60.153 57.895 0.00 0.00 0.00 2.45
2151 6713 2.036733 GGTGAGGTTGTGTAGTGTGCTA 59.963 50.000 0.00 0.00 0.00 3.49
2153 6715 1.226746 GGTGAGGTTGTGTAGTGTGC 58.773 55.000 0.00 0.00 0.00 4.57
2160 6722 4.215399 CGAAATGTTATGGTGAGGTTGTGT 59.785 41.667 0.00 0.00 0.00 3.72
2167 6729 4.880886 TGATGCGAAATGTTATGGTGAG 57.119 40.909 0.00 0.00 0.00 3.51
2194 6756 1.351017 AGATCACAAACATCGTGGGGT 59.649 47.619 0.00 0.00 35.03 4.95
2200 6762 6.466308 TGTAAGTTCAGATCACAAACATCG 57.534 37.500 0.00 0.00 0.00 3.84
2220 6782 2.032722 CGCGCAAAACCAAGTAGTTGTA 60.033 45.455 8.75 0.00 30.95 2.41
2273 6835 0.534412 CGGTGATCTCCTGCTTCAGT 59.466 55.000 11.86 0.00 0.00 3.41
2302 6864 1.374252 CCGTTCCTTGACCTGACCG 60.374 63.158 0.00 0.00 0.00 4.79
2430 6992 3.386543 CCGAGGGGATCACATTGTC 57.613 57.895 0.00 0.00 34.06 3.18
2480 7042 0.318441 CGCTCTTCTCCCAGACACAA 59.682 55.000 0.00 0.00 0.00 3.33
2498 7060 2.141517 CTAGCATGAATTCAGAGGCCG 58.858 52.381 19.80 11.49 0.00 6.13
2517 7079 5.485209 AACTAGAACCGATTCCTTTCACT 57.515 39.130 0.00 0.00 35.18 3.41
2608 7174 9.295825 AGTGTGTTCAATTATTTTCATAGGACA 57.704 29.630 0.00 0.00 0.00 4.02
2633 7199 4.264253 TCTTCAGGGATAACACAATGCAG 58.736 43.478 0.00 0.00 0.00 4.41
2647 7221 2.558359 GTCAACCCACATTTCTTCAGGG 59.442 50.000 0.00 0.00 45.20 4.45
2680 7254 1.344438 ACTCATGCAAGTCGTCAAGGA 59.656 47.619 0.00 0.00 0.00 3.36
2693 7267 6.827641 TGACTAATACAAAACGAACTCATGC 58.172 36.000 0.00 0.00 0.00 4.06
2698 7272 6.348213 GGTGCATGACTAATACAAAACGAACT 60.348 38.462 0.00 0.00 0.00 3.01
2702 7276 4.394920 AGGGTGCATGACTAATACAAAACG 59.605 41.667 0.00 0.00 0.00 3.60
2713 7287 7.749666 AGATAAAATACATAGGGTGCATGACT 58.250 34.615 0.00 0.00 0.00 3.41
2762 7336 1.152860 ACACAACCGCCATCAACCA 60.153 52.632 0.00 0.00 0.00 3.67
2785 7359 6.424032 TCTATCTAGCCTCCGCATAATTAGA 58.576 40.000 0.00 0.00 37.52 2.10
2790 7364 4.833380 AGTTTCTATCTAGCCTCCGCATAA 59.167 41.667 0.00 0.00 37.52 1.90
2795 7369 5.461032 AATGAGTTTCTATCTAGCCTCCG 57.539 43.478 0.00 0.00 0.00 4.63
2833 7423 5.730550 TGATAAAGGACACGCTATTTGACT 58.269 37.500 0.00 0.00 0.00 3.41
2873 7463 1.202417 AGCCGATCGATGTCATTCGTT 60.202 47.619 18.66 0.00 40.03 3.85
2875 7465 1.056103 GAGCCGATCGATGTCATTCG 58.944 55.000 18.66 0.00 40.46 3.34
2882 7472 1.006805 GTGGAGGAGCCGATCGATG 60.007 63.158 18.66 1.12 40.66 3.84
2918 7508 1.000646 GAGGTCACGGGAGAGGAGT 60.001 63.158 0.00 0.00 0.00 3.85
2928 7518 1.405821 GGTGTAGGATGAGAGGTCACG 59.594 57.143 0.00 0.00 34.75 4.35
2943 7533 2.504175 GGGTGGATTAGCAGAAGGTGTA 59.496 50.000 0.00 0.00 0.00 2.90
2947 7537 3.808618 GCATAGGGTGGATTAGCAGAAGG 60.809 52.174 0.00 0.00 0.00 3.46
2953 7543 0.685097 TCGGCATAGGGTGGATTAGC 59.315 55.000 0.00 0.00 0.00 3.09
2961 7551 3.637911 TTGTATTGTTCGGCATAGGGT 57.362 42.857 0.00 0.00 0.00 4.34
2971 7561 6.612306 GTGGGAAGAGTTGATTGTATTGTTC 58.388 40.000 0.00 0.00 0.00 3.18
2972 7562 5.181245 CGTGGGAAGAGTTGATTGTATTGTT 59.819 40.000 0.00 0.00 0.00 2.83
2973 7563 4.695455 CGTGGGAAGAGTTGATTGTATTGT 59.305 41.667 0.00 0.00 0.00 2.71
2974 7564 4.695455 ACGTGGGAAGAGTTGATTGTATTG 59.305 41.667 0.00 0.00 0.00 1.90
2975 7565 4.906618 ACGTGGGAAGAGTTGATTGTATT 58.093 39.130 0.00 0.00 0.00 1.89
2977 7567 4.619863 GCTACGTGGGAAGAGTTGATTGTA 60.620 45.833 0.00 0.00 0.00 2.41
2984 8230 2.699954 CAATGCTACGTGGGAAGAGTT 58.300 47.619 0.00 0.00 0.00 3.01
2990 8236 0.323302 TTGAGCAATGCTACGTGGGA 59.677 50.000 8.12 0.00 39.88 4.37
2995 8241 2.419673 TGTGGATTTGAGCAATGCTACG 59.580 45.455 8.12 0.00 39.88 3.51
2997 8243 3.419943 TGTGTGGATTTGAGCAATGCTA 58.580 40.909 8.12 0.00 39.88 3.49
3019 8265 4.843728 CAGGCCACCTTAATAGAGACAAA 58.156 43.478 5.01 0.00 0.00 2.83
3055 8301 1.005748 CTGCCTTGTGAGCTCGACA 60.006 57.895 9.64 11.64 0.00 4.35
3056 8302 1.011451 GTCTGCCTTGTGAGCTCGAC 61.011 60.000 9.64 9.11 0.00 4.20
3063 8309 3.064207 GTTATGTTCGTCTGCCTTGTGA 58.936 45.455 0.00 0.00 0.00 3.58
3076 8322 7.378181 ACCTTTTTCATGGTGATGTTATGTTC 58.622 34.615 0.00 0.00 34.90 3.18
3162 8408 5.013599 CCTCCAAAATAATTTTTGTGGGGGA 59.986 40.000 25.43 4.68 46.73 4.81
3232 8478 8.917655 CCGACGGTGTATTAATTTTGAATTTTT 58.082 29.630 5.48 0.00 0.00 1.94
3233 8479 7.062488 GCCGACGGTGTATTAATTTTGAATTTT 59.938 33.333 16.73 0.00 0.00 1.82
3234 8480 6.528774 GCCGACGGTGTATTAATTTTGAATTT 59.471 34.615 16.73 0.00 0.00 1.82
3235 8481 6.031471 GCCGACGGTGTATTAATTTTGAATT 58.969 36.000 16.73 0.00 0.00 2.17
3236 8482 5.449451 GGCCGACGGTGTATTAATTTTGAAT 60.449 40.000 16.73 0.00 0.00 2.57
3237 8483 4.142643 GGCCGACGGTGTATTAATTTTGAA 60.143 41.667 16.73 0.00 0.00 2.69
3238 8484 3.374678 GGCCGACGGTGTATTAATTTTGA 59.625 43.478 16.73 0.00 0.00 2.69
3239 8485 3.487879 GGGCCGACGGTGTATTAATTTTG 60.488 47.826 16.73 0.00 0.00 2.44
3240 8486 2.684374 GGGCCGACGGTGTATTAATTTT 59.316 45.455 16.73 0.00 0.00 1.82
3241 8487 2.291365 GGGCCGACGGTGTATTAATTT 58.709 47.619 16.73 0.00 0.00 1.82
3242 8488 1.807377 CGGGCCGACGGTGTATTAATT 60.807 52.381 24.41 0.00 0.00 1.40
3243 8489 0.249573 CGGGCCGACGGTGTATTAAT 60.250 55.000 24.41 0.00 0.00 1.40
3244 8490 1.141449 CGGGCCGACGGTGTATTAA 59.859 57.895 24.41 0.00 0.00 1.40
3245 8491 2.806929 CGGGCCGACGGTGTATTA 59.193 61.111 24.41 0.00 0.00 0.98
3246 8492 4.825252 GCGGGCCGACGGTGTATT 62.825 66.667 33.44 0.00 0.00 1.89
3263 8509 4.767255 GTCCCAGTCGGCCTGCAG 62.767 72.222 6.78 6.78 40.06 4.41
3264 8510 3.897681 TAGTCCCAGTCGGCCTGCA 62.898 63.158 0.00 0.00 40.06 4.41
3265 8511 3.075005 TAGTCCCAGTCGGCCTGC 61.075 66.667 0.00 0.00 40.06 4.85
3266 8512 1.668101 GACTAGTCCCAGTCGGCCTG 61.668 65.000 12.13 0.00 41.15 4.85
3267 8513 1.380112 GACTAGTCCCAGTCGGCCT 60.380 63.158 12.13 0.00 35.92 5.19
3268 8514 3.208335 GACTAGTCCCAGTCGGCC 58.792 66.667 12.13 0.00 35.92 6.13
3272 8518 2.424733 GGGCCGACTAGTCCCAGTC 61.425 68.421 17.23 7.69 41.33 3.51
3273 8519 2.363925 GGGCCGACTAGTCCCAGT 60.364 66.667 17.23 0.00 39.82 4.00
3274 8520 2.363795 TGGGCCGACTAGTCCCAG 60.364 66.667 17.23 7.49 44.62 4.45
3276 8522 2.682494 TGTGGGCCGACTAGTCCC 60.682 66.667 19.42 13.70 40.47 4.46
3277 8523 2.893398 CTGTGGGCCGACTAGTCC 59.107 66.667 19.42 4.32 0.00 3.85
3278 8524 2.184579 GCTGTGGGCCGACTAGTC 59.815 66.667 19.42 13.18 34.27 2.59
3279 8525 2.603473 TGCTGTGGGCCGACTAGT 60.603 61.111 19.42 0.00 40.92 2.57
3280 8526 2.185350 CTGCTGTGGGCCGACTAG 59.815 66.667 19.42 14.72 40.92 2.57
3281 8527 3.390521 CCTGCTGTGGGCCGACTA 61.391 66.667 19.42 4.76 40.92 2.59
3288 8534 3.136123 CAATCGGCCTGCTGTGGG 61.136 66.667 0.00 0.00 0.00 4.61
3289 8535 1.033746 ATTCAATCGGCCTGCTGTGG 61.034 55.000 0.00 0.00 0.00 4.17
3290 8536 0.813184 AATTCAATCGGCCTGCTGTG 59.187 50.000 0.00 0.00 0.00 3.66
3291 8537 1.098050 GAATTCAATCGGCCTGCTGT 58.902 50.000 0.00 0.00 0.00 4.40
3292 8538 0.383231 GGAATTCAATCGGCCTGCTG 59.617 55.000 7.93 0.00 0.00 4.41
3293 8539 0.034186 TGGAATTCAATCGGCCTGCT 60.034 50.000 7.93 0.00 0.00 4.24
3294 8540 0.383231 CTGGAATTCAATCGGCCTGC 59.617 55.000 7.93 0.00 0.00 4.85
3295 8541 1.672881 GACTGGAATTCAATCGGCCTG 59.327 52.381 7.93 0.00 0.00 4.85
3296 8542 1.743772 CGACTGGAATTCAATCGGCCT 60.744 52.381 7.93 0.00 40.88 5.19
3297 8543 0.657840 CGACTGGAATTCAATCGGCC 59.342 55.000 7.93 0.00 40.88 6.13
3300 8546 0.657840 GGCCGACTGGAATTCAATCG 59.342 55.000 7.93 12.15 43.75 3.34
3301 8547 2.044123 AGGCCGACTGGAATTCAATC 57.956 50.000 7.93 0.49 37.49 2.67
3302 8548 2.238646 TGTAGGCCGACTGGAATTCAAT 59.761 45.455 17.46 0.00 37.49 2.57
3303 8549 1.626321 TGTAGGCCGACTGGAATTCAA 59.374 47.619 17.46 0.00 37.49 2.69
3304 8550 1.207089 CTGTAGGCCGACTGGAATTCA 59.793 52.381 17.46 0.00 37.49 2.57
3305 8551 1.941325 CTGTAGGCCGACTGGAATTC 58.059 55.000 17.46 0.00 37.49 2.17
3306 8552 0.107654 GCTGTAGGCCGACTGGAATT 60.108 55.000 21.31 0.00 37.49 2.17
3307 8553 0.978146 AGCTGTAGGCCGACTGGAAT 60.978 55.000 21.31 4.18 43.05 3.01
3308 8554 1.609501 AGCTGTAGGCCGACTGGAA 60.610 57.895 21.31 0.00 43.05 3.53
3309 8555 2.037367 AGCTGTAGGCCGACTGGA 59.963 61.111 21.31 0.01 43.05 3.86
3310 8556 2.185350 CAGCTGTAGGCCGACTGG 59.815 66.667 21.31 13.30 43.05 4.00
3311 8557 2.185350 CCAGCTGTAGGCCGACTG 59.815 66.667 17.46 17.16 43.05 3.51
3312 8558 3.775654 GCCAGCTGTAGGCCGACT 61.776 66.667 17.46 0.00 46.50 4.18
3318 8564 2.185350 CAGTCGGCCAGCTGTAGG 59.815 66.667 13.81 0.00 0.00 3.18
3319 8565 2.185350 CCAGTCGGCCAGCTGTAG 59.815 66.667 13.81 3.41 0.00 2.74
3337 8583 2.768344 ATAGTGGGCCGACAGGGG 60.768 66.667 20.91 0.00 38.20 4.79
3338 8584 2.505982 CATAGTGGGCCGACAGGG 59.494 66.667 20.91 4.53 38.20 4.45
3339 8585 2.505982 CCATAGTGGGCCGACAGG 59.494 66.667 20.91 14.33 41.62 4.00
3348 8594 2.292267 GACACAATCAGCCCATAGTGG 58.708 52.381 0.00 0.00 37.25 4.00
3349 8595 2.092753 AGGACACAATCAGCCCATAGTG 60.093 50.000 0.00 0.00 0.00 2.74
3350 8596 2.092753 CAGGACACAATCAGCCCATAGT 60.093 50.000 0.00 0.00 0.00 2.12
3351 8597 2.092753 ACAGGACACAATCAGCCCATAG 60.093 50.000 0.00 0.00 0.00 2.23
3352 8598 1.915489 ACAGGACACAATCAGCCCATA 59.085 47.619 0.00 0.00 0.00 2.74
3353 8599 0.700564 ACAGGACACAATCAGCCCAT 59.299 50.000 0.00 0.00 0.00 4.00
3354 8600 0.036732 GACAGGACACAATCAGCCCA 59.963 55.000 0.00 0.00 0.00 5.36
3355 8601 1.021390 CGACAGGACACAATCAGCCC 61.021 60.000 0.00 0.00 0.00 5.19
3356 8602 1.021390 CCGACAGGACACAATCAGCC 61.021 60.000 0.00 0.00 41.02 4.85
3357 8603 1.639298 GCCGACAGGACACAATCAGC 61.639 60.000 0.00 0.00 41.02 4.26
3358 8604 2.460330 GCCGACAGGACACAATCAG 58.540 57.895 0.00 0.00 41.02 2.90
3359 8605 4.693532 GCCGACAGGACACAATCA 57.306 55.556 0.00 0.00 41.02 2.57
3367 8613 3.625897 CACAGTGGGCCGACAGGA 61.626 66.667 20.91 0.00 41.02 3.86
3368 8614 4.704833 CCACAGTGGGCCGACAGG 62.705 72.222 20.91 14.33 41.62 4.00
3377 8623 4.704833 CCAGTCGGCCCACAGTGG 62.705 72.222 13.35 13.35 37.25 4.00
3378 8624 3.596066 CTCCAGTCGGCCCACAGTG 62.596 68.421 2.46 0.00 0.00 3.66
3379 8625 3.314331 CTCCAGTCGGCCCACAGT 61.314 66.667 2.46 0.00 0.00 3.55
3380 8626 4.767255 GCTCCAGTCGGCCCACAG 62.767 72.222 2.46 0.00 0.00 3.66
3381 8627 3.897681 TAGCTCCAGTCGGCCCACA 62.898 63.158 2.46 0.00 0.00 4.17
3382 8628 1.972660 ATTAGCTCCAGTCGGCCCAC 61.973 60.000 0.00 0.00 0.00 4.61
3383 8629 1.271840 AATTAGCTCCAGTCGGCCCA 61.272 55.000 0.00 0.00 0.00 5.36
3384 8630 0.815615 CAATTAGCTCCAGTCGGCCC 60.816 60.000 0.00 0.00 0.00 5.80
3385 8631 0.815615 CCAATTAGCTCCAGTCGGCC 60.816 60.000 0.00 0.00 0.00 6.13
3386 8632 1.440145 GCCAATTAGCTCCAGTCGGC 61.440 60.000 0.00 0.00 0.00 5.54
3387 8633 0.179000 AGCCAATTAGCTCCAGTCGG 59.821 55.000 0.00 0.00 39.48 4.79
3388 8634 3.768633 AGCCAATTAGCTCCAGTCG 57.231 52.632 0.00 0.00 39.48 4.18
3396 8642 1.718757 CCCACAGCGAGCCAATTAGC 61.719 60.000 0.00 0.00 0.00 3.09
3397 8643 1.718757 GCCCACAGCGAGCCAATTAG 61.719 60.000 0.00 0.00 0.00 1.73
3398 8644 1.748879 GCCCACAGCGAGCCAATTA 60.749 57.895 0.00 0.00 0.00 1.40
3399 8645 3.064324 GCCCACAGCGAGCCAATT 61.064 61.111 0.00 0.00 0.00 2.32
3408 8654 2.480037 GCAAAAACAATTAGCCCACAGC 59.520 45.455 0.00 0.00 44.25 4.40
3409 8655 3.726607 TGCAAAAACAATTAGCCCACAG 58.273 40.909 0.00 0.00 0.00 3.66
3410 8656 3.827008 TGCAAAAACAATTAGCCCACA 57.173 38.095 0.00 0.00 0.00 4.17
3411 8657 5.491635 TTTTGCAAAAACAATTAGCCCAC 57.508 34.783 21.94 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.