Multiple sequence alignment - TraesCS5A01G464400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G464400 chr5A 100.000 2201 0 0 1 2201 643921324 643923524 0.000000e+00 4065
1 TraesCS5A01G464400 chr5D 96.171 679 19 6 1528 2201 89495769 89496445 0.000000e+00 1103
2 TraesCS5A01G464400 chr5D 95.646 689 20 9 1518 2201 450115147 450114464 0.000000e+00 1098
3 TraesCS5A01G464400 chr5D 95.231 692 22 10 1515 2201 562047415 562046730 0.000000e+00 1085
4 TraesCS5A01G464400 chr5D 91.447 152 6 1 340 491 515671939 515672083 3.710000e-48 202
5 TraesCS5A01G464400 chr5D 94.828 116 6 0 204 319 515671764 515671879 4.830000e-42 182
6 TraesCS5A01G464400 chr2B 95.766 685 20 8 1515 2193 747234986 747234305 0.000000e+00 1096
7 TraesCS5A01G464400 chr2B 95.101 694 21 12 1513 2201 543169970 543170655 0.000000e+00 1081
8 TraesCS5A01G464400 chr2B 88.372 172 13 4 586 754 38399723 38399556 1.330000e-47 200
9 TraesCS5A01G464400 chr2B 88.304 171 14 4 587 755 291855006 291855172 1.330000e-47 200
10 TraesCS5A01G464400 chr2D 95.238 693 25 6 1514 2200 82880353 82879663 0.000000e+00 1090
11 TraesCS5A01G464400 chr2D 89.773 176 12 4 585 758 56540992 56541163 1.020000e-53 220
12 TraesCS5A01G464400 chr6D 95.224 691 24 7 1515 2200 193834038 193834724 0.000000e+00 1085
13 TraesCS5A01G464400 chr5B 95.094 693 26 7 1514 2201 305050748 305051437 0.000000e+00 1085
14 TraesCS5A01G464400 chr5B 90.837 502 37 3 1014 1514 648287359 648287852 0.000000e+00 664
15 TraesCS5A01G464400 chr5B 80.793 328 25 15 204 494 648609065 648608739 2.840000e-54 222
16 TraesCS5A01G464400 chr5B 80.386 311 22 16 204 476 648284489 648284798 1.330000e-47 200
17 TraesCS5A01G464400 chr5B 89.933 149 15 0 343 491 648299793 648299941 2.230000e-45 193
18 TraesCS5A01G464400 chr5B 93.103 116 8 0 204 319 648293309 648293424 1.040000e-38 171
19 TraesCS5A01G464400 chr7D 94.964 695 28 6 1511 2200 558171264 558170572 0.000000e+00 1083
20 TraesCS5A01G464400 chr1A 76.309 726 143 24 803 1514 581205995 581206705 5.780000e-96 361
21 TraesCS5A01G464400 chr1A 75.672 670 141 18 856 1514 581433581 581434239 4.560000e-82 315
22 TraesCS5A01G464400 chr1A 76.389 576 121 11 803 1373 581110265 581110830 1.650000e-76 296
23 TraesCS5A01G464400 chr1D 75.740 676 135 21 856 1514 484251358 484252021 1.640000e-81 313
24 TraesCS5A01G464400 chr1D 76.429 560 115 15 803 1357 484113477 484114024 9.940000e-74 287
25 TraesCS5A01G464400 chr1B 74.218 671 150 20 856 1514 674494867 674495526 2.170000e-65 259
26 TraesCS5A01G464400 chr1B 77.381 420 84 9 804 1220 674075648 674076059 2.820000e-59 239
27 TraesCS5A01G464400 chr1B 86.339 183 19 4 574 754 543806118 543805940 6.200000e-46 195
28 TraesCS5A01G464400 chr4D 89.080 174 13 4 588 759 58643757 58643926 6.160000e-51 211
29 TraesCS5A01G464400 chr3A 89.412 170 12 5 584 751 659527226 659527391 2.210000e-50 209
30 TraesCS5A01G464400 chr4B 89.759 166 11 4 588 751 660120600 660120761 7.960000e-50 207
31 TraesCS5A01G464400 chr7B 87.097 186 14 7 585 765 311345655 311345835 3.710000e-48 202
32 TraesCS5A01G464400 chr6B 87.027 185 14 8 586 765 699977612 699977433 1.330000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G464400 chr5A 643921324 643923524 2200 False 4065 4065 100.0000 1 2201 1 chr5A.!!$F1 2200
1 TraesCS5A01G464400 chr5D 89495769 89496445 676 False 1103 1103 96.1710 1528 2201 1 chr5D.!!$F1 673
2 TraesCS5A01G464400 chr5D 450114464 450115147 683 True 1098 1098 95.6460 1518 2201 1 chr5D.!!$R1 683
3 TraesCS5A01G464400 chr5D 562046730 562047415 685 True 1085 1085 95.2310 1515 2201 1 chr5D.!!$R2 686
4 TraesCS5A01G464400 chr2B 747234305 747234986 681 True 1096 1096 95.7660 1515 2193 1 chr2B.!!$R2 678
5 TraesCS5A01G464400 chr2B 543169970 543170655 685 False 1081 1081 95.1010 1513 2201 1 chr2B.!!$F2 688
6 TraesCS5A01G464400 chr2D 82879663 82880353 690 True 1090 1090 95.2380 1514 2200 1 chr2D.!!$R1 686
7 TraesCS5A01G464400 chr6D 193834038 193834724 686 False 1085 1085 95.2240 1515 2200 1 chr6D.!!$F1 685
8 TraesCS5A01G464400 chr5B 305050748 305051437 689 False 1085 1085 95.0940 1514 2201 1 chr5B.!!$F1 687
9 TraesCS5A01G464400 chr5B 648284489 648287852 3363 False 432 664 85.6115 204 1514 2 chr5B.!!$F4 1310
10 TraesCS5A01G464400 chr7D 558170572 558171264 692 True 1083 1083 94.9640 1511 2200 1 chr7D.!!$R1 689
11 TraesCS5A01G464400 chr1A 581205995 581206705 710 False 361 361 76.3090 803 1514 1 chr1A.!!$F2 711
12 TraesCS5A01G464400 chr1A 581433581 581434239 658 False 315 315 75.6720 856 1514 1 chr1A.!!$F3 658
13 TraesCS5A01G464400 chr1A 581110265 581110830 565 False 296 296 76.3890 803 1373 1 chr1A.!!$F1 570
14 TraesCS5A01G464400 chr1D 484251358 484252021 663 False 313 313 75.7400 856 1514 1 chr1D.!!$F2 658
15 TraesCS5A01G464400 chr1D 484113477 484114024 547 False 287 287 76.4290 803 1357 1 chr1D.!!$F1 554
16 TraesCS5A01G464400 chr1B 674494867 674495526 659 False 259 259 74.2180 856 1514 1 chr1B.!!$F2 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.03213 TCATCTGGAATACGCTCCGC 59.968 55.0 0.0 0.0 38.44 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 4117 0.107654 GCTGTAGGCCGACTGGAATT 60.108 55.0 21.31 0.0 37.49 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.651382 TGGATGGATGGATCAAGCAG 57.349 50.000 0.00 0.00 0.00 4.24
21 22 1.144298 TGGATGGATGGATCAAGCAGG 59.856 52.381 0.00 0.00 0.00 4.85
22 23 1.144503 GGATGGATGGATCAAGCAGGT 59.855 52.381 0.00 0.00 0.00 4.00
23 24 2.502295 GATGGATGGATCAAGCAGGTC 58.498 52.381 0.00 0.00 0.00 3.85
24 25 0.548031 TGGATGGATCAAGCAGGTCC 59.452 55.000 1.72 1.72 0.00 4.46
25 26 0.533755 GGATGGATCAAGCAGGTCCG 60.534 60.000 4.29 0.00 34.72 4.79
26 27 0.533755 GATGGATCAAGCAGGTCCGG 60.534 60.000 0.00 0.00 34.72 5.14
27 28 2.514824 GGATCAAGCAGGTCCGGC 60.515 66.667 5.78 5.78 0.00 6.13
28 29 2.586792 GATCAAGCAGGTCCGGCT 59.413 61.111 11.15 11.15 45.15 5.52
43 44 2.038557 TCCGGCTTGGATCTTTATAGGC 59.961 50.000 0.00 0.00 43.74 3.93
44 45 2.069273 CGGCTTGGATCTTTATAGGCG 58.931 52.381 0.00 0.00 45.87 5.52
45 46 3.402628 GGCTTGGATCTTTATAGGCGA 57.597 47.619 0.00 0.00 0.00 5.54
46 47 3.944087 GGCTTGGATCTTTATAGGCGAT 58.056 45.455 0.00 0.00 0.00 4.58
47 48 3.686726 GGCTTGGATCTTTATAGGCGATG 59.313 47.826 0.00 0.00 0.00 3.84
48 49 4.563580 GGCTTGGATCTTTATAGGCGATGA 60.564 45.833 0.00 0.00 0.00 2.92
49 50 5.181748 GCTTGGATCTTTATAGGCGATGAT 58.818 41.667 0.00 0.00 0.00 2.45
50 51 5.064452 GCTTGGATCTTTATAGGCGATGATG 59.936 44.000 0.00 0.00 0.00 3.07
51 52 5.089970 TGGATCTTTATAGGCGATGATGG 57.910 43.478 0.00 0.00 0.00 3.51
52 53 4.777366 TGGATCTTTATAGGCGATGATGGA 59.223 41.667 0.00 0.00 0.00 3.41
53 54 5.248248 TGGATCTTTATAGGCGATGATGGAA 59.752 40.000 0.00 0.00 0.00 3.53
54 55 5.814705 GGATCTTTATAGGCGATGATGGAAG 59.185 44.000 0.00 0.00 0.00 3.46
55 56 6.351371 GGATCTTTATAGGCGATGATGGAAGA 60.351 42.308 0.00 0.00 0.00 2.87
56 57 6.419484 TCTTTATAGGCGATGATGGAAGAA 57.581 37.500 0.00 0.00 0.00 2.52
57 58 6.826668 TCTTTATAGGCGATGATGGAAGAAA 58.173 36.000 0.00 0.00 0.00 2.52
58 59 6.706270 TCTTTATAGGCGATGATGGAAGAAAC 59.294 38.462 0.00 0.00 0.00 2.78
59 60 2.787473 AGGCGATGATGGAAGAAACA 57.213 45.000 0.00 0.00 0.00 2.83
60 61 3.071874 AGGCGATGATGGAAGAAACAA 57.928 42.857 0.00 0.00 0.00 2.83
61 62 3.624777 AGGCGATGATGGAAGAAACAAT 58.375 40.909 0.00 0.00 0.00 2.71
62 63 3.379372 AGGCGATGATGGAAGAAACAATG 59.621 43.478 0.00 0.00 0.00 2.82
63 64 3.489738 GGCGATGATGGAAGAAACAATGG 60.490 47.826 0.00 0.00 0.00 3.16
64 65 3.129287 GCGATGATGGAAGAAACAATGGT 59.871 43.478 0.00 0.00 0.00 3.55
65 66 4.665212 CGATGATGGAAGAAACAATGGTG 58.335 43.478 0.00 0.00 0.00 4.17
66 67 4.439153 CGATGATGGAAGAAACAATGGTGG 60.439 45.833 0.00 0.00 0.00 4.61
67 68 3.164268 TGATGGAAGAAACAATGGTGGG 58.836 45.455 0.00 0.00 0.00 4.61
68 69 1.337118 TGGAAGAAACAATGGTGGGC 58.663 50.000 0.00 0.00 0.00 5.36
69 70 1.337118 GGAAGAAACAATGGTGGGCA 58.663 50.000 0.00 0.00 0.00 5.36
70 71 1.901833 GGAAGAAACAATGGTGGGCAT 59.098 47.619 0.00 0.00 0.00 4.40
71 72 3.096092 GGAAGAAACAATGGTGGGCATA 58.904 45.455 0.00 0.00 0.00 3.14
72 73 3.706086 GGAAGAAACAATGGTGGGCATAT 59.294 43.478 0.00 0.00 0.00 1.78
73 74 4.202151 GGAAGAAACAATGGTGGGCATATC 60.202 45.833 0.00 0.00 0.00 1.63
74 75 4.255510 AGAAACAATGGTGGGCATATCT 57.744 40.909 0.00 0.00 0.00 1.98
75 76 4.613437 AGAAACAATGGTGGGCATATCTT 58.387 39.130 0.00 0.00 0.00 2.40
76 77 5.765510 AGAAACAATGGTGGGCATATCTTA 58.234 37.500 0.00 0.00 0.00 2.10
77 78 5.594317 AGAAACAATGGTGGGCATATCTTAC 59.406 40.000 0.00 0.00 0.00 2.34
78 79 4.518278 ACAATGGTGGGCATATCTTACA 57.482 40.909 0.00 0.00 0.00 2.41
79 80 4.464008 ACAATGGTGGGCATATCTTACAG 58.536 43.478 0.00 0.00 0.00 2.74
80 81 3.795688 ATGGTGGGCATATCTTACAGG 57.204 47.619 0.00 0.00 0.00 4.00
81 82 2.770447 TGGTGGGCATATCTTACAGGA 58.230 47.619 0.00 0.00 0.00 3.86
82 83 3.326521 TGGTGGGCATATCTTACAGGAT 58.673 45.455 0.00 0.00 0.00 3.24
83 84 3.327757 TGGTGGGCATATCTTACAGGATC 59.672 47.826 0.00 0.00 0.00 3.36
84 85 3.327757 GGTGGGCATATCTTACAGGATCA 59.672 47.826 0.00 0.00 0.00 2.92
85 86 4.202461 GGTGGGCATATCTTACAGGATCAA 60.202 45.833 0.00 0.00 0.00 2.57
86 87 4.757149 GTGGGCATATCTTACAGGATCAAC 59.243 45.833 0.00 0.00 0.00 3.18
87 88 3.997021 GGGCATATCTTACAGGATCAACG 59.003 47.826 0.00 0.00 0.00 4.10
88 89 4.262463 GGGCATATCTTACAGGATCAACGA 60.262 45.833 0.00 0.00 0.00 3.85
89 90 5.297547 GGCATATCTTACAGGATCAACGAA 58.702 41.667 0.00 0.00 0.00 3.85
90 91 5.406780 GGCATATCTTACAGGATCAACGAAG 59.593 44.000 0.00 0.00 0.00 3.79
91 92 5.406780 GCATATCTTACAGGATCAACGAAGG 59.593 44.000 0.00 0.00 0.00 3.46
92 93 6.738731 GCATATCTTACAGGATCAACGAAGGA 60.739 42.308 0.00 0.00 0.00 3.36
93 94 5.677319 ATCTTACAGGATCAACGAAGGAA 57.323 39.130 0.00 0.00 0.00 3.36
94 95 5.477607 TCTTACAGGATCAACGAAGGAAA 57.522 39.130 0.00 0.00 0.00 3.13
95 96 5.235516 TCTTACAGGATCAACGAAGGAAAC 58.764 41.667 0.00 0.00 0.00 2.78
97 98 4.884668 ACAGGATCAACGAAGGAAACTA 57.115 40.909 0.00 0.00 42.68 2.24
98 99 5.422214 ACAGGATCAACGAAGGAAACTAT 57.578 39.130 0.00 0.00 42.68 2.12
99 100 5.805728 ACAGGATCAACGAAGGAAACTATT 58.194 37.500 0.00 0.00 42.68 1.73
100 101 6.942976 ACAGGATCAACGAAGGAAACTATTA 58.057 36.000 0.00 0.00 42.68 0.98
101 102 7.391620 ACAGGATCAACGAAGGAAACTATTAA 58.608 34.615 0.00 0.00 42.68 1.40
102 103 7.333672 ACAGGATCAACGAAGGAAACTATTAAC 59.666 37.037 0.00 0.00 42.68 2.01
103 104 7.333423 CAGGATCAACGAAGGAAACTATTAACA 59.667 37.037 0.00 0.00 42.68 2.41
104 105 7.549488 AGGATCAACGAAGGAAACTATTAACAG 59.451 37.037 0.00 0.00 42.68 3.16
105 106 7.333672 GGATCAACGAAGGAAACTATTAACAGT 59.666 37.037 0.00 0.00 42.68 3.55
106 107 9.362539 GATCAACGAAGGAAACTATTAACAGTA 57.637 33.333 0.00 0.00 42.68 2.74
107 108 8.524870 TCAACGAAGGAAACTATTAACAGTAC 57.475 34.615 0.00 0.00 42.68 2.73
108 109 8.362639 TCAACGAAGGAAACTATTAACAGTACT 58.637 33.333 0.00 0.00 42.68 2.73
109 110 8.433126 CAACGAAGGAAACTATTAACAGTACTG 58.567 37.037 21.44 21.44 42.68 2.74
110 111 7.889469 ACGAAGGAAACTATTAACAGTACTGA 58.111 34.615 29.30 7.59 42.68 3.41
111 112 8.362639 ACGAAGGAAACTATTAACAGTACTGAA 58.637 33.333 29.30 14.29 42.68 3.02
112 113 9.199982 CGAAGGAAACTATTAACAGTACTGAAA 57.800 33.333 29.30 20.90 42.68 2.69
123 124 5.880054 ACAGTACTGAAATAATGGTGTGC 57.120 39.130 29.30 0.00 0.00 4.57
124 125 4.391830 ACAGTACTGAAATAATGGTGTGCG 59.608 41.667 29.30 0.00 0.00 5.34
125 126 4.391830 CAGTACTGAAATAATGGTGTGCGT 59.608 41.667 18.45 0.00 0.00 5.24
126 127 5.001232 AGTACTGAAATAATGGTGTGCGTT 58.999 37.500 0.00 0.00 0.00 4.84
127 128 4.846779 ACTGAAATAATGGTGTGCGTTT 57.153 36.364 0.00 0.00 0.00 3.60
128 129 4.794169 ACTGAAATAATGGTGTGCGTTTC 58.206 39.130 0.00 0.00 0.00 2.78
129 130 4.277174 ACTGAAATAATGGTGTGCGTTTCA 59.723 37.500 0.00 0.00 35.19 2.69
130 131 5.048083 ACTGAAATAATGGTGTGCGTTTCAT 60.048 36.000 0.00 0.00 35.71 2.57
131 132 5.398169 TGAAATAATGGTGTGCGTTTCATC 58.602 37.500 0.00 0.00 32.50 2.92
132 133 5.182950 TGAAATAATGGTGTGCGTTTCATCT 59.817 36.000 0.00 0.00 32.50 2.90
133 134 2.995466 AATGGTGTGCGTTTCATCTG 57.005 45.000 0.00 0.00 0.00 2.90
134 135 1.167851 ATGGTGTGCGTTTCATCTGG 58.832 50.000 0.00 0.00 0.00 3.86
135 136 0.107643 TGGTGTGCGTTTCATCTGGA 59.892 50.000 0.00 0.00 0.00 3.86
136 137 1.234821 GGTGTGCGTTTCATCTGGAA 58.765 50.000 0.00 0.00 0.00 3.53
137 138 1.812571 GGTGTGCGTTTCATCTGGAAT 59.187 47.619 0.00 0.00 34.91 3.01
138 139 3.006940 GGTGTGCGTTTCATCTGGAATA 58.993 45.455 0.00 0.00 34.91 1.75
139 140 3.181510 GGTGTGCGTTTCATCTGGAATAC 60.182 47.826 0.00 0.00 34.91 1.89
140 141 2.670905 TGTGCGTTTCATCTGGAATACG 59.329 45.455 0.00 0.00 40.12 3.06
143 144 3.843426 CGTTTCATCTGGAATACGCTC 57.157 47.619 0.00 0.00 35.18 5.03
144 145 2.540101 CGTTTCATCTGGAATACGCTCC 59.460 50.000 0.00 0.00 35.18 4.70
145 146 2.509052 TTCATCTGGAATACGCTCCG 57.491 50.000 0.00 0.00 38.44 4.63
146 147 0.032130 TCATCTGGAATACGCTCCGC 59.968 55.000 0.00 0.00 38.44 5.54
147 148 0.032678 CATCTGGAATACGCTCCGCT 59.967 55.000 0.00 0.00 38.44 5.52
148 149 0.032678 ATCTGGAATACGCTCCGCTG 59.967 55.000 0.00 0.00 38.44 5.18
149 150 1.592669 CTGGAATACGCTCCGCTGG 60.593 63.158 0.00 0.00 38.44 4.85
150 151 2.967615 GGAATACGCTCCGCTGGC 60.968 66.667 0.00 0.00 0.00 4.85
151 152 2.202878 GAATACGCTCCGCTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
152 153 2.202932 AATACGCTCCGCTGGCAG 60.203 61.111 10.94 10.94 0.00 4.85
153 154 2.907897 GAATACGCTCCGCTGGCAGT 62.908 60.000 17.16 0.00 0.00 4.40
154 155 1.672854 AATACGCTCCGCTGGCAGTA 61.673 55.000 17.16 0.00 0.00 2.74
155 156 1.464376 ATACGCTCCGCTGGCAGTAT 61.464 55.000 17.16 1.89 0.00 2.12
156 157 2.349969 TACGCTCCGCTGGCAGTATG 62.350 60.000 17.16 6.47 40.87 2.39
157 158 2.501128 GCTCCGCTGGCAGTATGA 59.499 61.111 17.16 9.22 39.69 2.15
169 170 2.416747 GCAGTATGACAGTTGACAGCA 58.583 47.619 0.00 0.00 39.69 4.41
170 171 2.414481 GCAGTATGACAGTTGACAGCAG 59.586 50.000 0.00 0.00 39.69 4.24
171 172 3.657634 CAGTATGACAGTTGACAGCAGT 58.342 45.455 0.00 0.00 39.69 4.40
172 173 4.809673 CAGTATGACAGTTGACAGCAGTA 58.190 43.478 0.00 0.00 39.69 2.74
173 174 4.623167 CAGTATGACAGTTGACAGCAGTAC 59.377 45.833 0.00 0.00 39.69 2.73
174 175 3.751479 ATGACAGTTGACAGCAGTACA 57.249 42.857 0.00 0.00 0.00 2.90
175 176 3.535280 TGACAGTTGACAGCAGTACAA 57.465 42.857 0.00 0.00 0.00 2.41
176 177 3.457234 TGACAGTTGACAGCAGTACAAG 58.543 45.455 0.00 0.00 0.00 3.16
177 178 3.132111 TGACAGTTGACAGCAGTACAAGA 59.868 43.478 0.00 0.00 0.00 3.02
178 179 3.458189 ACAGTTGACAGCAGTACAAGAC 58.542 45.455 0.00 0.00 0.00 3.01
179 180 3.133003 ACAGTTGACAGCAGTACAAGACT 59.867 43.478 0.00 0.00 39.82 3.24
180 181 4.341235 ACAGTTGACAGCAGTACAAGACTA 59.659 41.667 0.00 0.00 35.64 2.59
181 182 4.681942 CAGTTGACAGCAGTACAAGACTAC 59.318 45.833 0.00 0.00 35.64 2.73
182 183 4.341235 AGTTGACAGCAGTACAAGACTACA 59.659 41.667 0.00 0.00 35.64 2.74
183 184 4.929819 TGACAGCAGTACAAGACTACAA 57.070 40.909 0.00 0.00 35.64 2.41
184 185 5.270893 TGACAGCAGTACAAGACTACAAA 57.729 39.130 0.00 0.00 35.64 2.83
185 186 5.289595 TGACAGCAGTACAAGACTACAAAG 58.710 41.667 0.00 0.00 35.64 2.77
186 187 5.068591 TGACAGCAGTACAAGACTACAAAGA 59.931 40.000 0.00 0.00 35.64 2.52
187 188 5.533482 ACAGCAGTACAAGACTACAAAGAG 58.467 41.667 0.00 0.00 35.64 2.85
188 189 5.302059 ACAGCAGTACAAGACTACAAAGAGA 59.698 40.000 0.00 0.00 35.64 3.10
189 190 6.183360 ACAGCAGTACAAGACTACAAAGAGAA 60.183 38.462 0.00 0.00 35.64 2.87
190 191 6.364706 CAGCAGTACAAGACTACAAAGAGAAG 59.635 42.308 0.00 0.00 35.64 2.85
191 192 5.635700 GCAGTACAAGACTACAAAGAGAAGG 59.364 44.000 0.00 0.00 35.64 3.46
192 193 6.516860 GCAGTACAAGACTACAAAGAGAAGGA 60.517 42.308 0.00 0.00 35.64 3.36
193 194 7.434492 CAGTACAAGACTACAAAGAGAAGGAA 58.566 38.462 0.00 0.00 35.64 3.36
194 195 7.926555 CAGTACAAGACTACAAAGAGAAGGAAA 59.073 37.037 0.00 0.00 35.64 3.13
195 196 8.652290 AGTACAAGACTACAAAGAGAAGGAAAT 58.348 33.333 0.00 0.00 36.27 2.17
196 197 9.274206 GTACAAGACTACAAAGAGAAGGAAATT 57.726 33.333 0.00 0.00 0.00 1.82
198 199 9.274206 ACAAGACTACAAAGAGAAGGAAATTAC 57.726 33.333 0.00 0.00 0.00 1.89
199 200 9.273016 CAAGACTACAAAGAGAAGGAAATTACA 57.727 33.333 0.00 0.00 0.00 2.41
200 201 8.834749 AGACTACAAAGAGAAGGAAATTACAC 57.165 34.615 0.00 0.00 0.00 2.90
201 202 7.599245 AGACTACAAAGAGAAGGAAATTACACG 59.401 37.037 0.00 0.00 0.00 4.49
202 203 7.439381 ACTACAAAGAGAAGGAAATTACACGA 58.561 34.615 0.00 0.00 0.00 4.35
211 212 6.371825 AGAAGGAAATTACACGAGCCTAAAAG 59.628 38.462 0.00 0.00 0.00 2.27
286 287 3.325870 TGCAAACCTGTCTAGATTCACG 58.674 45.455 0.00 0.00 0.00 4.35
289 290 0.824759 ACCTGTCTAGATTCACGGCC 59.175 55.000 0.00 0.00 0.00 6.13
294 295 2.766263 TGTCTAGATTCACGGCCTCATT 59.234 45.455 0.00 0.00 0.00 2.57
295 296 3.126831 GTCTAGATTCACGGCCTCATTG 58.873 50.000 0.00 0.00 0.00 2.82
338 360 6.545504 TTCAGAGCTGAAAACTCACATAAC 57.454 37.500 10.30 0.00 45.56 1.89
339 361 4.997395 TCAGAGCTGAAAACTCACATAACC 59.003 41.667 0.00 0.00 36.53 2.85
340 362 3.997021 AGAGCTGAAAACTCACATAACCG 59.003 43.478 0.00 0.00 36.58 4.44
341 363 3.740115 AGCTGAAAACTCACATAACCGT 58.260 40.909 0.00 0.00 0.00 4.83
354 390 7.126242 TCACATAACCGTATGGGACACTGAG 62.126 48.000 5.82 0.00 43.80 3.35
361 397 2.348998 GGGACACTGAGGGCACAG 59.651 66.667 8.90 8.90 42.78 3.66
381 417 3.062323 GCATGCAGCAGAGTGTAATTC 57.938 47.619 14.21 0.00 44.79 2.17
382 418 2.223433 GCATGCAGCAGAGTGTAATTCC 60.223 50.000 14.21 0.00 44.79 3.01
383 419 2.113860 TGCAGCAGAGTGTAATTCCC 57.886 50.000 0.00 0.00 0.00 3.97
384 420 1.350684 TGCAGCAGAGTGTAATTCCCA 59.649 47.619 0.00 0.00 0.00 4.37
385 421 2.012673 GCAGCAGAGTGTAATTCCCAG 58.987 52.381 0.00 0.00 0.00 4.45
386 422 2.355108 GCAGCAGAGTGTAATTCCCAGA 60.355 50.000 0.00 0.00 0.00 3.86
390 426 6.115446 CAGCAGAGTGTAATTCCCAGAATTA 58.885 40.000 5.82 5.82 0.00 1.40
403 439 5.484715 TCCCAGAATTACACGTTTCTAAGG 58.515 41.667 0.10 5.15 31.15 2.69
442 480 0.108615 CATCCAGAACGCTCGAACCT 60.109 55.000 0.00 0.00 0.00 3.50
447 485 1.457303 CAGAACGCTCGAACCTCAAAG 59.543 52.381 0.00 0.00 0.00 2.77
487 850 1.125021 CTTTGTAAGAGCGAGCACGTG 59.875 52.381 12.28 12.28 41.98 4.49
491 854 1.812686 TAAGAGCGAGCACGTGGGTT 61.813 55.000 18.88 0.00 41.98 4.11
512 875 4.636435 CCGCTGGTTCCCGTTGGT 62.636 66.667 0.00 0.00 0.00 3.67
513 876 2.593436 CGCTGGTTCCCGTTGGTT 60.593 61.111 0.00 0.00 0.00 3.67
514 877 2.190841 CGCTGGTTCCCGTTGGTTT 61.191 57.895 0.00 0.00 0.00 3.27
515 878 1.730451 CGCTGGTTCCCGTTGGTTTT 61.730 55.000 0.00 0.00 0.00 2.43
516 879 1.320507 GCTGGTTCCCGTTGGTTTTA 58.679 50.000 0.00 0.00 0.00 1.52
517 880 1.890489 GCTGGTTCCCGTTGGTTTTAT 59.110 47.619 0.00 0.00 0.00 1.40
518 881 2.094906 GCTGGTTCCCGTTGGTTTTATC 60.095 50.000 0.00 0.00 0.00 1.75
519 882 2.490509 CTGGTTCCCGTTGGTTTTATCC 59.509 50.000 0.00 0.00 0.00 2.59
520 883 2.108601 TGGTTCCCGTTGGTTTTATCCT 59.891 45.455 0.00 0.00 0.00 3.24
521 884 3.159472 GGTTCCCGTTGGTTTTATCCTT 58.841 45.455 0.00 0.00 0.00 3.36
522 885 3.575256 GGTTCCCGTTGGTTTTATCCTTT 59.425 43.478 0.00 0.00 0.00 3.11
523 886 4.766373 GGTTCCCGTTGGTTTTATCCTTTA 59.234 41.667 0.00 0.00 0.00 1.85
524 887 5.243507 GGTTCCCGTTGGTTTTATCCTTTAA 59.756 40.000 0.00 0.00 0.00 1.52
525 888 6.239261 GGTTCCCGTTGGTTTTATCCTTTAAA 60.239 38.462 0.00 0.00 0.00 1.52
526 889 7.380536 GTTCCCGTTGGTTTTATCCTTTAAAT 58.619 34.615 0.00 0.00 0.00 1.40
527 890 7.541916 TCCCGTTGGTTTTATCCTTTAAATT 57.458 32.000 0.00 0.00 0.00 1.82
528 891 7.604549 TCCCGTTGGTTTTATCCTTTAAATTC 58.395 34.615 0.00 0.00 0.00 2.17
529 892 7.452189 TCCCGTTGGTTTTATCCTTTAAATTCT 59.548 33.333 0.00 0.00 0.00 2.40
530 893 8.092068 CCCGTTGGTTTTATCCTTTAAATTCTT 58.908 33.333 0.00 0.00 0.00 2.52
531 894 9.483916 CCGTTGGTTTTATCCTTTAAATTCTTT 57.516 29.630 0.00 0.00 0.00 2.52
543 906 9.142014 TCCTTTAAATTCTTTCATTGGTTCTCA 57.858 29.630 0.00 0.00 0.00 3.27
544 907 9.933723 CCTTTAAATTCTTTCATTGGTTCTCAT 57.066 29.630 0.00 0.00 0.00 2.90
558 921 9.655769 CATTGGTTCTCATATTTTGTAGATTCG 57.344 33.333 0.00 0.00 0.00 3.34
559 922 8.786826 TTGGTTCTCATATTTTGTAGATTCGT 57.213 30.769 0.00 0.00 0.00 3.85
560 923 8.786826 TGGTTCTCATATTTTGTAGATTCGTT 57.213 30.769 0.00 0.00 0.00 3.85
561 924 9.226606 TGGTTCTCATATTTTGTAGATTCGTTT 57.773 29.630 0.00 0.00 0.00 3.60
599 962 8.907222 TTTAAATAACTTGTACTCCCTTCGTT 57.093 30.769 0.00 0.00 0.00 3.85
600 963 8.907222 TTAAATAACTTGTACTCCCTTCGTTT 57.093 30.769 0.00 0.00 0.00 3.60
601 964 7.430992 AAATAACTTGTACTCCCTTCGTTTC 57.569 36.000 0.00 0.00 0.00 2.78
602 965 4.684484 AACTTGTACTCCCTTCGTTTCT 57.316 40.909 0.00 0.00 0.00 2.52
603 966 5.796424 AACTTGTACTCCCTTCGTTTCTA 57.204 39.130 0.00 0.00 0.00 2.10
604 967 5.796424 ACTTGTACTCCCTTCGTTTCTAA 57.204 39.130 0.00 0.00 0.00 2.10
605 968 6.165700 ACTTGTACTCCCTTCGTTTCTAAA 57.834 37.500 0.00 0.00 0.00 1.85
606 969 6.766429 ACTTGTACTCCCTTCGTTTCTAAAT 58.234 36.000 0.00 0.00 0.00 1.40
607 970 7.899973 ACTTGTACTCCCTTCGTTTCTAAATA 58.100 34.615 0.00 0.00 0.00 1.40
608 971 8.537858 ACTTGTACTCCCTTCGTTTCTAAATAT 58.462 33.333 0.00 0.00 0.00 1.28
614 977 8.979534 ACTCCCTTCGTTTCTAAATATAAGTCT 58.020 33.333 0.00 0.00 0.00 3.24
615 978 9.819267 CTCCCTTCGTTTCTAAATATAAGTCTT 57.181 33.333 0.00 0.00 0.00 3.01
644 1007 9.961265 TGAAGATTTTACTATGACTACATACGG 57.039 33.333 0.00 0.00 37.87 4.02
647 1010 8.298140 AGATTTTACTATGACTACATACGGAGC 58.702 37.037 0.00 0.00 37.87 4.70
648 1011 6.947644 TTTACTATGACTACATACGGAGCA 57.052 37.500 0.00 0.00 37.87 4.26
649 1012 6.947644 TTACTATGACTACATACGGAGCAA 57.052 37.500 0.00 0.00 37.87 3.91
650 1013 5.847111 ACTATGACTACATACGGAGCAAA 57.153 39.130 0.00 0.00 37.87 3.68
651 1014 6.216801 ACTATGACTACATACGGAGCAAAA 57.783 37.500 0.00 0.00 37.87 2.44
652 1015 6.817184 ACTATGACTACATACGGAGCAAAAT 58.183 36.000 0.00 0.00 37.87 1.82
653 1016 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
654 1017 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
655 1018 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
656 1019 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
657 1020 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
658 1021 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
659 1022 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
660 1023 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
661 1024 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
662 1025 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
663 1026 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
664 1027 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
665 1028 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
666 1029 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
676 1039 5.386958 AGTGAATCTACACTCTTAACGCA 57.613 39.130 0.00 0.00 46.36 5.24
677 1040 5.967088 AGTGAATCTACACTCTTAACGCAT 58.033 37.500 0.00 0.00 46.36 4.73
678 1041 6.037098 AGTGAATCTACACTCTTAACGCATC 58.963 40.000 0.00 0.00 46.36 3.91
679 1042 6.037098 GTGAATCTACACTCTTAACGCATCT 58.963 40.000 0.00 0.00 37.73 2.90
680 1043 7.067129 AGTGAATCTACACTCTTAACGCATCTA 59.933 37.037 0.00 0.00 46.36 1.98
681 1044 7.863375 GTGAATCTACACTCTTAACGCATCTAT 59.137 37.037 0.00 0.00 37.73 1.98
682 1045 9.063615 TGAATCTACACTCTTAACGCATCTATA 57.936 33.333 0.00 0.00 0.00 1.31
686 1049 9.498176 TCTACACTCTTAACGCATCTATATACA 57.502 33.333 0.00 0.00 0.00 2.29
689 1052 8.244802 ACACTCTTAACGCATCTATATACATCC 58.755 37.037 0.00 0.00 0.00 3.51
690 1053 7.429630 CACTCTTAACGCATCTATATACATCCG 59.570 40.741 0.00 0.00 0.00 4.18
691 1054 7.120873 ACTCTTAACGCATCTATATACATCCGT 59.879 37.037 0.00 0.00 0.00 4.69
692 1055 8.496707 TCTTAACGCATCTATATACATCCGTA 57.503 34.615 0.00 0.00 0.00 4.02
693 1056 9.117183 TCTTAACGCATCTATATACATCCGTAT 57.883 33.333 0.00 0.00 41.34 3.06
694 1057 9.170584 CTTAACGCATCTATATACATCCGTATG 57.829 37.037 0.00 0.00 38.79 2.39
696 1059 6.495706 ACGCATCTATATACATCCGTATGTG 58.504 40.000 3.56 0.00 45.99 3.21
697 1060 5.915196 CGCATCTATATACATCCGTATGTGG 59.085 44.000 3.56 0.00 45.99 4.17
698 1061 5.692204 GCATCTATATACATCCGTATGTGGC 59.308 44.000 3.56 0.00 45.99 5.01
699 1062 6.682861 GCATCTATATACATCCGTATGTGGCA 60.683 42.308 3.56 0.00 45.99 4.92
700 1063 6.451064 TCTATATACATCCGTATGTGGCAG 57.549 41.667 3.56 0.00 45.99 4.85
701 1064 2.839486 ATACATCCGTATGTGGCAGG 57.161 50.000 3.56 0.00 45.99 4.85
702 1065 1.491668 TACATCCGTATGTGGCAGGT 58.508 50.000 3.56 0.00 45.99 4.00
703 1066 0.178068 ACATCCGTATGTGGCAGGTC 59.822 55.000 0.00 0.00 44.79 3.85
704 1067 0.177836 CATCCGTATGTGGCAGGTCA 59.822 55.000 0.00 0.00 0.00 4.02
705 1068 0.908910 ATCCGTATGTGGCAGGTCAA 59.091 50.000 0.00 0.00 0.00 3.18
706 1069 0.908910 TCCGTATGTGGCAGGTCAAT 59.091 50.000 0.00 0.00 0.00 2.57
707 1070 2.112190 TCCGTATGTGGCAGGTCAATA 58.888 47.619 0.00 0.00 0.00 1.90
708 1071 2.102420 TCCGTATGTGGCAGGTCAATAG 59.898 50.000 0.00 0.00 0.00 1.73
709 1072 2.158957 CCGTATGTGGCAGGTCAATAGT 60.159 50.000 0.00 0.00 0.00 2.12
710 1073 2.866156 CGTATGTGGCAGGTCAATAGTG 59.134 50.000 0.00 0.00 0.00 2.74
711 1074 3.430236 CGTATGTGGCAGGTCAATAGTGA 60.430 47.826 0.00 0.00 0.00 3.41
712 1075 3.719268 ATGTGGCAGGTCAATAGTGAA 57.281 42.857 0.00 0.00 34.87 3.18
713 1076 3.500448 TGTGGCAGGTCAATAGTGAAA 57.500 42.857 0.00 0.00 34.87 2.69
714 1077 4.032960 TGTGGCAGGTCAATAGTGAAAT 57.967 40.909 0.00 0.00 34.87 2.17
715 1078 5.172687 TGTGGCAGGTCAATAGTGAAATA 57.827 39.130 0.00 0.00 34.87 1.40
716 1079 5.754782 TGTGGCAGGTCAATAGTGAAATAT 58.245 37.500 0.00 0.00 34.87 1.28
717 1080 5.822519 TGTGGCAGGTCAATAGTGAAATATC 59.177 40.000 0.00 0.00 34.87 1.63
718 1081 6.058183 GTGGCAGGTCAATAGTGAAATATCT 58.942 40.000 0.00 0.00 34.87 1.98
719 1082 7.147567 TGTGGCAGGTCAATAGTGAAATATCTA 60.148 37.037 0.00 0.00 34.87 1.98
720 1083 7.880195 GTGGCAGGTCAATAGTGAAATATCTAT 59.120 37.037 0.00 0.00 34.87 1.98
721 1084 9.100197 TGGCAGGTCAATAGTGAAATATCTATA 57.900 33.333 0.00 0.00 34.87 1.31
722 1085 9.944376 GGCAGGTCAATAGTGAAATATCTATAA 57.056 33.333 0.00 0.00 34.87 0.98
746 1109 8.904099 AAAGACTTATATTTAGGAACGGATGG 57.096 34.615 0.00 0.00 0.00 3.51
747 1110 7.850935 AGACTTATATTTAGGAACGGATGGA 57.149 36.000 0.00 0.00 0.00 3.41
748 1111 7.897864 AGACTTATATTTAGGAACGGATGGAG 58.102 38.462 0.00 0.00 0.00 3.86
749 1112 7.509659 AGACTTATATTTAGGAACGGATGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
750 1113 8.716674 ACTTATATTTAGGAACGGATGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
751 1114 9.322769 ACTTATATTTAGGAACGGATGGAGTAT 57.677 33.333 0.00 0.00 0.00 2.12
757 1120 9.862149 ATTTAGGAACGGATGGAGTATATTTTT 57.138 29.630 0.00 0.00 0.00 1.94
778 1141 5.878332 TTTATGTGCAAAGATCGTGATGT 57.122 34.783 3.85 0.00 0.00 3.06
779 1142 3.752412 ATGTGCAAAGATCGTGATGTG 57.248 42.857 3.85 0.00 0.00 3.21
780 1143 2.493035 TGTGCAAAGATCGTGATGTGT 58.507 42.857 3.85 0.00 0.00 3.72
781 1144 2.877786 TGTGCAAAGATCGTGATGTGTT 59.122 40.909 3.85 0.00 0.00 3.32
782 1145 3.228749 GTGCAAAGATCGTGATGTGTTG 58.771 45.455 3.85 0.00 0.00 3.33
783 1146 3.058983 GTGCAAAGATCGTGATGTGTTGA 60.059 43.478 3.85 0.00 0.00 3.18
784 1147 3.187022 TGCAAAGATCGTGATGTGTTGAG 59.813 43.478 3.85 0.00 0.00 3.02
785 1148 3.425359 GCAAAGATCGTGATGTGTTGAGG 60.425 47.826 3.85 0.00 0.00 3.86
786 1149 2.015736 AGATCGTGATGTGTTGAGGC 57.984 50.000 0.00 0.00 0.00 4.70
787 1150 1.009829 GATCGTGATGTGTTGAGGCC 58.990 55.000 0.00 0.00 0.00 5.19
788 1151 0.324614 ATCGTGATGTGTTGAGGCCA 59.675 50.000 5.01 0.00 0.00 5.36
789 1152 0.107643 TCGTGATGTGTTGAGGCCAA 59.892 50.000 5.01 0.00 0.00 4.52
790 1153 1.167851 CGTGATGTGTTGAGGCCAAT 58.832 50.000 5.01 0.00 34.39 3.16
791 1154 1.131126 CGTGATGTGTTGAGGCCAATC 59.869 52.381 5.01 0.00 34.39 2.67
792 1155 1.474077 GTGATGTGTTGAGGCCAATCC 59.526 52.381 5.01 0.00 34.39 3.01
840 1203 9.832445 TCTACTATCAATGGGATCTTTTAACAC 57.168 33.333 0.00 0.00 37.44 3.32
851 1214 8.429641 TGGGATCTTTTAACACTCAGATATACC 58.570 37.037 0.00 0.00 0.00 2.73
852 1215 7.878644 GGGATCTTTTAACACTCAGATATACCC 59.121 40.741 0.00 0.00 0.00 3.69
853 1216 7.878644 GGATCTTTTAACACTCAGATATACCCC 59.121 40.741 0.00 0.00 0.00 4.95
854 1217 7.133133 TCTTTTAACACTCAGATATACCCCC 57.867 40.000 0.00 0.00 0.00 5.40
860 1223 7.707467 AACACTCAGATATACCCCCTTAATT 57.293 36.000 0.00 0.00 0.00 1.40
900 1263 4.180817 CACGAGCTTCATACCATTGTGTA 58.819 43.478 0.00 0.00 0.00 2.90
950 2376 7.808672 TGTTAAGACCAAACATAAACATACCG 58.191 34.615 0.00 0.00 32.07 4.02
968 2394 2.299297 ACCGGTGAAAAGAGTAGTGGAG 59.701 50.000 6.12 0.00 0.00 3.86
970 2396 3.195825 CCGGTGAAAAGAGTAGTGGAGAT 59.804 47.826 0.00 0.00 0.00 2.75
976 2402 6.147985 GTGAAAAGAGTAGTGGAGATTGTTCC 59.852 42.308 0.00 0.00 37.77 3.62
986 2412 3.117888 TGGAGATTGTTCCCTATTGCTCC 60.118 47.826 0.00 0.00 40.73 4.70
1005 3194 0.650512 CGTGTACTTAGGCAATGGCG 59.349 55.000 0.00 0.00 42.47 5.69
1009 3198 2.942376 TGTACTTAGGCAATGGCGAATG 59.058 45.455 2.55 1.06 42.47 2.67
1023 3477 3.244665 TGGCGAATGATAGCATCCTTCAT 60.245 43.478 0.00 0.00 34.74 2.57
1072 3526 1.766496 TCTGCCTGCTCATGATGATGA 59.234 47.619 0.00 0.00 37.07 2.92
1170 3624 1.304381 ATTTGGTGGCGTGATGGCT 60.304 52.632 0.00 0.00 45.14 4.75
1332 3794 9.394477 GTTGTTGGACAAGCTATTTAGTTAAAG 57.606 33.333 0.00 0.00 39.00 1.85
1360 3823 7.202139 GGTGGGAGGAGATTGTTATCTATCTTT 60.202 40.741 0.28 0.00 41.23 2.52
1477 3944 8.565896 TTTGATCATAATGGACCATATGTAGC 57.434 34.615 7.59 0.00 0.00 3.58
1495 3962 6.089920 TGTAGCTGATTTCAACGTATTTCG 57.910 37.500 0.00 0.00 46.00 3.46
1514 3982 6.961359 TTTCGACACATACAGTTAATCCAG 57.039 37.500 0.00 0.00 0.00 3.86
1515 3983 4.430007 TCGACACATACAGTTAATCCAGC 58.570 43.478 0.00 0.00 0.00 4.85
1516 3984 4.159693 TCGACACATACAGTTAATCCAGCT 59.840 41.667 0.00 0.00 0.00 4.24
1517 3985 5.358725 TCGACACATACAGTTAATCCAGCTA 59.641 40.000 0.00 0.00 0.00 3.32
1518 3986 6.040504 TCGACACATACAGTTAATCCAGCTAT 59.959 38.462 0.00 0.00 0.00 2.97
1648 4117 2.046023 CCACAGCAGGCCGATTGA 60.046 61.111 9.88 0.00 0.00 2.57
1718 4187 1.374252 GTGATTGCGTCCTGTCGGT 60.374 57.895 0.00 0.00 0.00 4.69
2187 4665 6.976934 ATGTTCCAGTTCCATACAAAAAGT 57.023 33.333 0.00 0.00 0.00 2.66
2196 4674 4.688021 TCCATACAAAAAGTGCAACCAAC 58.312 39.130 0.00 0.00 37.80 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.533755 CGGACCTGCTTGATCCATCC 60.534 60.000 0.00 0.00 32.35 3.51
7 8 0.533755 CCGGACCTGCTTGATCCATC 60.534 60.000 0.00 0.00 32.35 3.51
8 9 1.528824 CCGGACCTGCTTGATCCAT 59.471 57.895 0.00 0.00 32.35 3.41
10 11 2.514824 GCCGGACCTGCTTGATCC 60.515 66.667 5.05 0.00 0.00 3.36
11 12 1.078143 AAGCCGGACCTGCTTGATC 60.078 57.895 20.99 0.00 46.76 2.92
12 13 3.081554 AAGCCGGACCTGCTTGAT 58.918 55.556 20.99 0.00 46.76 2.57
23 24 2.427506 GCCTATAAAGATCCAAGCCGG 58.572 52.381 0.00 0.00 0.00 6.13
24 25 2.069273 CGCCTATAAAGATCCAAGCCG 58.931 52.381 0.00 0.00 0.00 5.52
25 26 3.402628 TCGCCTATAAAGATCCAAGCC 57.597 47.619 0.00 0.00 0.00 4.35
26 27 4.569943 TCATCGCCTATAAAGATCCAAGC 58.430 43.478 0.00 0.00 0.00 4.01
27 28 5.583854 CCATCATCGCCTATAAAGATCCAAG 59.416 44.000 0.00 0.00 0.00 3.61
28 29 5.248248 TCCATCATCGCCTATAAAGATCCAA 59.752 40.000 0.00 0.00 0.00 3.53
29 30 4.777366 TCCATCATCGCCTATAAAGATCCA 59.223 41.667 0.00 0.00 0.00 3.41
30 31 5.344743 TCCATCATCGCCTATAAAGATCC 57.655 43.478 0.00 0.00 0.00 3.36
31 32 6.634805 TCTTCCATCATCGCCTATAAAGATC 58.365 40.000 0.00 0.00 0.00 2.75
32 33 6.611613 TCTTCCATCATCGCCTATAAAGAT 57.388 37.500 0.00 0.00 0.00 2.40
33 34 6.419484 TTCTTCCATCATCGCCTATAAAGA 57.581 37.500 0.00 0.00 0.00 2.52
34 35 6.483307 TGTTTCTTCCATCATCGCCTATAAAG 59.517 38.462 0.00 0.00 0.00 1.85
35 36 6.353323 TGTTTCTTCCATCATCGCCTATAAA 58.647 36.000 0.00 0.00 0.00 1.40
36 37 5.924356 TGTTTCTTCCATCATCGCCTATAA 58.076 37.500 0.00 0.00 0.00 0.98
37 38 5.545063 TGTTTCTTCCATCATCGCCTATA 57.455 39.130 0.00 0.00 0.00 1.31
38 39 4.422073 TGTTTCTTCCATCATCGCCTAT 57.578 40.909 0.00 0.00 0.00 2.57
39 40 3.904800 TGTTTCTTCCATCATCGCCTA 57.095 42.857 0.00 0.00 0.00 3.93
40 41 2.787473 TGTTTCTTCCATCATCGCCT 57.213 45.000 0.00 0.00 0.00 5.52
41 42 3.489738 CCATTGTTTCTTCCATCATCGCC 60.490 47.826 0.00 0.00 0.00 5.54
42 43 3.129287 ACCATTGTTTCTTCCATCATCGC 59.871 43.478 0.00 0.00 0.00 4.58
43 44 4.439153 CCACCATTGTTTCTTCCATCATCG 60.439 45.833 0.00 0.00 0.00 3.84
44 45 4.142093 CCCACCATTGTTTCTTCCATCATC 60.142 45.833 0.00 0.00 0.00 2.92
45 46 3.770933 CCCACCATTGTTTCTTCCATCAT 59.229 43.478 0.00 0.00 0.00 2.45
46 47 3.164268 CCCACCATTGTTTCTTCCATCA 58.836 45.455 0.00 0.00 0.00 3.07
47 48 2.094026 GCCCACCATTGTTTCTTCCATC 60.094 50.000 0.00 0.00 0.00 3.51
48 49 1.901833 GCCCACCATTGTTTCTTCCAT 59.098 47.619 0.00 0.00 0.00 3.41
49 50 1.337118 GCCCACCATTGTTTCTTCCA 58.663 50.000 0.00 0.00 0.00 3.53
50 51 1.337118 TGCCCACCATTGTTTCTTCC 58.663 50.000 0.00 0.00 0.00 3.46
51 52 4.646492 AGATATGCCCACCATTGTTTCTTC 59.354 41.667 0.00 0.00 35.34 2.87
52 53 4.613437 AGATATGCCCACCATTGTTTCTT 58.387 39.130 0.00 0.00 35.34 2.52
53 54 4.255510 AGATATGCCCACCATTGTTTCT 57.744 40.909 0.00 0.00 35.34 2.52
54 55 5.359576 TGTAAGATATGCCCACCATTGTTTC 59.640 40.000 0.00 0.00 35.34 2.78
55 56 5.268387 TGTAAGATATGCCCACCATTGTTT 58.732 37.500 0.00 0.00 35.34 2.83
56 57 4.865905 TGTAAGATATGCCCACCATTGTT 58.134 39.130 0.00 0.00 35.34 2.83
57 58 4.464008 CTGTAAGATATGCCCACCATTGT 58.536 43.478 0.00 0.00 34.07 2.71
58 59 3.822735 CCTGTAAGATATGCCCACCATTG 59.177 47.826 0.00 0.00 34.07 2.82
59 60 3.721575 TCCTGTAAGATATGCCCACCATT 59.278 43.478 0.00 0.00 34.07 3.16
60 61 3.326521 TCCTGTAAGATATGCCCACCAT 58.673 45.455 0.00 0.00 34.07 3.55
61 62 2.770447 TCCTGTAAGATATGCCCACCA 58.230 47.619 0.00 0.00 34.07 4.17
62 63 3.327757 TGATCCTGTAAGATATGCCCACC 59.672 47.826 0.00 0.00 34.07 4.61
63 64 4.623932 TGATCCTGTAAGATATGCCCAC 57.376 45.455 0.00 0.00 34.07 4.61
64 65 4.503123 CGTTGATCCTGTAAGATATGCCCA 60.503 45.833 0.00 0.00 34.07 5.36
65 66 3.997021 CGTTGATCCTGTAAGATATGCCC 59.003 47.826 0.00 0.00 34.07 5.36
66 67 4.883083 TCGTTGATCCTGTAAGATATGCC 58.117 43.478 0.00 0.00 34.07 4.40
67 68 5.406780 CCTTCGTTGATCCTGTAAGATATGC 59.593 44.000 0.00 0.00 34.07 3.14
68 69 6.749139 TCCTTCGTTGATCCTGTAAGATATG 58.251 40.000 0.00 0.00 34.07 1.78
69 70 6.978674 TCCTTCGTTGATCCTGTAAGATAT 57.021 37.500 0.00 0.00 34.07 1.63
70 71 6.785337 TTCCTTCGTTGATCCTGTAAGATA 57.215 37.500 0.00 0.00 34.07 1.98
71 72 5.677319 TTCCTTCGTTGATCCTGTAAGAT 57.323 39.130 0.00 0.00 34.07 2.40
72 73 5.011738 AGTTTCCTTCGTTGATCCTGTAAGA 59.988 40.000 0.00 0.00 34.07 2.10
73 74 5.238583 AGTTTCCTTCGTTGATCCTGTAAG 58.761 41.667 0.00 0.00 0.00 2.34
74 75 5.223449 AGTTTCCTTCGTTGATCCTGTAA 57.777 39.130 0.00 0.00 0.00 2.41
75 76 4.884668 AGTTTCCTTCGTTGATCCTGTA 57.115 40.909 0.00 0.00 0.00 2.74
76 77 3.771577 AGTTTCCTTCGTTGATCCTGT 57.228 42.857 0.00 0.00 0.00 4.00
77 78 7.333423 TGTTAATAGTTTCCTTCGTTGATCCTG 59.667 37.037 0.00 0.00 0.00 3.86
78 79 7.391620 TGTTAATAGTTTCCTTCGTTGATCCT 58.608 34.615 0.00 0.00 0.00 3.24
79 80 7.333672 ACTGTTAATAGTTTCCTTCGTTGATCC 59.666 37.037 0.00 0.00 0.00 3.36
80 81 8.252964 ACTGTTAATAGTTTCCTTCGTTGATC 57.747 34.615 0.00 0.00 0.00 2.92
81 82 9.148104 GTACTGTTAATAGTTTCCTTCGTTGAT 57.852 33.333 10.35 0.00 32.19 2.57
82 83 8.362639 AGTACTGTTAATAGTTTCCTTCGTTGA 58.637 33.333 10.35 0.00 32.19 3.18
83 84 8.433126 CAGTACTGTTAATAGTTTCCTTCGTTG 58.567 37.037 15.06 0.00 32.19 4.10
84 85 8.362639 TCAGTACTGTTAATAGTTTCCTTCGTT 58.637 33.333 21.99 0.00 32.19 3.85
85 86 7.889469 TCAGTACTGTTAATAGTTTCCTTCGT 58.111 34.615 21.99 0.00 32.19 3.85
86 87 8.752766 TTCAGTACTGTTAATAGTTTCCTTCG 57.247 34.615 21.99 0.00 32.19 3.79
97 98 8.458843 GCACACCATTATTTCAGTACTGTTAAT 58.541 33.333 21.99 21.50 0.00 1.40
98 99 7.360522 CGCACACCATTATTTCAGTACTGTTAA 60.361 37.037 21.99 16.87 0.00 2.01
99 100 6.091577 CGCACACCATTATTTCAGTACTGTTA 59.908 38.462 21.99 11.78 0.00 2.41
100 101 5.106712 CGCACACCATTATTTCAGTACTGTT 60.107 40.000 21.99 11.06 0.00 3.16
101 102 4.391830 CGCACACCATTATTTCAGTACTGT 59.608 41.667 21.99 6.25 0.00 3.55
102 103 4.391830 ACGCACACCATTATTTCAGTACTG 59.608 41.667 17.17 17.17 0.00 2.74
103 104 4.575885 ACGCACACCATTATTTCAGTACT 58.424 39.130 0.00 0.00 0.00 2.73
104 105 4.939509 ACGCACACCATTATTTCAGTAC 57.060 40.909 0.00 0.00 0.00 2.73
105 106 5.470437 TGAAACGCACACCATTATTTCAGTA 59.530 36.000 0.00 0.00 32.61 2.74
106 107 4.277174 TGAAACGCACACCATTATTTCAGT 59.723 37.500 0.00 0.00 32.61 3.41
107 108 4.793071 TGAAACGCACACCATTATTTCAG 58.207 39.130 0.00 0.00 32.61 3.02
108 109 4.837896 TGAAACGCACACCATTATTTCA 57.162 36.364 0.00 0.00 34.57 2.69
109 110 5.512788 CAGATGAAACGCACACCATTATTTC 59.487 40.000 0.00 0.00 0.00 2.17
110 111 5.401550 CAGATGAAACGCACACCATTATTT 58.598 37.500 0.00 0.00 0.00 1.40
111 112 4.142403 CCAGATGAAACGCACACCATTATT 60.142 41.667 0.00 0.00 0.00 1.40
112 113 3.378112 CCAGATGAAACGCACACCATTAT 59.622 43.478 0.00 0.00 0.00 1.28
113 114 2.746904 CCAGATGAAACGCACACCATTA 59.253 45.455 0.00 0.00 0.00 1.90
114 115 1.541147 CCAGATGAAACGCACACCATT 59.459 47.619 0.00 0.00 0.00 3.16
115 116 1.167851 CCAGATGAAACGCACACCAT 58.832 50.000 0.00 0.00 0.00 3.55
116 117 0.107643 TCCAGATGAAACGCACACCA 59.892 50.000 0.00 0.00 0.00 4.17
117 118 1.234821 TTCCAGATGAAACGCACACC 58.765 50.000 0.00 0.00 0.00 4.16
118 119 3.483574 CGTATTCCAGATGAAACGCACAC 60.484 47.826 0.00 0.00 36.33 3.82
119 120 2.670905 CGTATTCCAGATGAAACGCACA 59.329 45.455 0.00 0.00 36.33 4.57
120 121 3.304382 CGTATTCCAGATGAAACGCAC 57.696 47.619 0.00 0.00 36.33 5.34
122 123 2.368980 GCGTATTCCAGATGAAACGC 57.631 50.000 14.04 14.04 46.01 4.84
123 124 2.540101 GGAGCGTATTCCAGATGAAACG 59.460 50.000 0.00 0.00 38.91 3.60
124 125 2.540101 CGGAGCGTATTCCAGATGAAAC 59.460 50.000 4.14 0.00 37.05 2.78
125 126 2.821546 CGGAGCGTATTCCAGATGAAA 58.178 47.619 4.14 0.00 37.05 2.69
126 127 2.509052 CGGAGCGTATTCCAGATGAA 57.491 50.000 4.14 0.00 37.05 2.57
141 142 0.529337 CTGTCATACTGCCAGCGGAG 60.529 60.000 5.26 0.00 0.00 4.63
142 143 1.257750 ACTGTCATACTGCCAGCGGA 61.258 55.000 5.26 0.00 0.00 5.54
143 144 0.391661 AACTGTCATACTGCCAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
144 145 0.723414 CAACTGTCATACTGCCAGCG 59.277 55.000 0.00 0.00 0.00 5.18
145 146 1.734465 GTCAACTGTCATACTGCCAGC 59.266 52.381 0.00 0.00 0.00 4.85
146 147 2.998670 CTGTCAACTGTCATACTGCCAG 59.001 50.000 0.00 0.00 0.00 4.85
147 148 2.871637 GCTGTCAACTGTCATACTGCCA 60.872 50.000 0.00 0.00 32.56 4.92
148 149 1.734465 GCTGTCAACTGTCATACTGCC 59.266 52.381 0.00 0.00 32.56 4.85
149 150 2.414481 CTGCTGTCAACTGTCATACTGC 59.586 50.000 10.13 10.13 37.33 4.40
150 151 3.657634 ACTGCTGTCAACTGTCATACTG 58.342 45.455 0.00 0.00 0.00 2.74
151 152 4.280929 TGTACTGCTGTCAACTGTCATACT 59.719 41.667 0.00 0.00 0.00 2.12
152 153 4.556233 TGTACTGCTGTCAACTGTCATAC 58.444 43.478 0.00 0.00 0.00 2.39
153 154 4.864704 TGTACTGCTGTCAACTGTCATA 57.135 40.909 0.00 0.00 0.00 2.15
154 155 3.751479 TGTACTGCTGTCAACTGTCAT 57.249 42.857 0.00 0.00 0.00 3.06
155 156 3.132111 TCTTGTACTGCTGTCAACTGTCA 59.868 43.478 0.00 0.00 0.00 3.58
156 157 3.491267 GTCTTGTACTGCTGTCAACTGTC 59.509 47.826 0.00 0.00 0.00 3.51
157 158 3.133003 AGTCTTGTACTGCTGTCAACTGT 59.867 43.478 0.00 0.00 36.93 3.55
158 159 3.722147 AGTCTTGTACTGCTGTCAACTG 58.278 45.455 0.00 0.00 36.93 3.16
159 160 4.341235 TGTAGTCTTGTACTGCTGTCAACT 59.659 41.667 0.00 3.36 41.10 3.16
160 161 4.617959 TGTAGTCTTGTACTGCTGTCAAC 58.382 43.478 0.00 0.00 41.10 3.18
161 162 4.929819 TGTAGTCTTGTACTGCTGTCAA 57.070 40.909 0.00 4.25 41.10 3.18
162 163 4.929819 TTGTAGTCTTGTACTGCTGTCA 57.070 40.909 0.00 0.00 41.10 3.58
163 164 5.529791 TCTTTGTAGTCTTGTACTGCTGTC 58.470 41.667 0.00 0.00 41.10 3.51
164 165 5.302059 TCTCTTTGTAGTCTTGTACTGCTGT 59.698 40.000 0.66 0.66 41.10 4.40
165 166 5.773575 TCTCTTTGTAGTCTTGTACTGCTG 58.226 41.667 0.00 0.00 41.10 4.41
166 167 6.406692 TTCTCTTTGTAGTCTTGTACTGCT 57.593 37.500 0.00 0.00 41.10 4.24
167 168 5.635700 CCTTCTCTTTGTAGTCTTGTACTGC 59.364 44.000 0.00 0.00 39.39 4.40
168 169 6.982852 TCCTTCTCTTTGTAGTCTTGTACTG 58.017 40.000 0.00 0.00 39.39 2.74
169 170 7.598759 TTCCTTCTCTTTGTAGTCTTGTACT 57.401 36.000 0.00 0.00 42.62 2.73
170 171 8.834749 ATTTCCTTCTCTTTGTAGTCTTGTAC 57.165 34.615 0.00 0.00 0.00 2.90
172 173 9.274206 GTAATTTCCTTCTCTTTGTAGTCTTGT 57.726 33.333 0.00 0.00 0.00 3.16
173 174 9.273016 TGTAATTTCCTTCTCTTTGTAGTCTTG 57.727 33.333 0.00 0.00 0.00 3.02
174 175 9.274206 GTGTAATTTCCTTCTCTTTGTAGTCTT 57.726 33.333 0.00 0.00 0.00 3.01
175 176 7.599245 CGTGTAATTTCCTTCTCTTTGTAGTCT 59.401 37.037 0.00 0.00 0.00 3.24
176 177 7.597743 TCGTGTAATTTCCTTCTCTTTGTAGTC 59.402 37.037 0.00 0.00 0.00 2.59
177 178 7.439381 TCGTGTAATTTCCTTCTCTTTGTAGT 58.561 34.615 0.00 0.00 0.00 2.73
178 179 7.412020 GCTCGTGTAATTTCCTTCTCTTTGTAG 60.412 40.741 0.00 0.00 0.00 2.74
179 180 6.367969 GCTCGTGTAATTTCCTTCTCTTTGTA 59.632 38.462 0.00 0.00 0.00 2.41
180 181 5.179555 GCTCGTGTAATTTCCTTCTCTTTGT 59.820 40.000 0.00 0.00 0.00 2.83
181 182 5.390991 GGCTCGTGTAATTTCCTTCTCTTTG 60.391 44.000 0.00 0.00 0.00 2.77
182 183 4.695928 GGCTCGTGTAATTTCCTTCTCTTT 59.304 41.667 0.00 0.00 0.00 2.52
183 184 4.020128 AGGCTCGTGTAATTTCCTTCTCTT 60.020 41.667 0.00 0.00 0.00 2.85
184 185 3.515901 AGGCTCGTGTAATTTCCTTCTCT 59.484 43.478 0.00 0.00 0.00 3.10
185 186 3.863041 AGGCTCGTGTAATTTCCTTCTC 58.137 45.455 0.00 0.00 0.00 2.87
186 187 3.983044 AGGCTCGTGTAATTTCCTTCT 57.017 42.857 0.00 0.00 0.00 2.85
187 188 6.403309 CCTTTTAGGCTCGTGTAATTTCCTTC 60.403 42.308 0.00 0.00 0.00 3.46
188 189 5.414765 CCTTTTAGGCTCGTGTAATTTCCTT 59.585 40.000 0.00 0.00 0.00 3.36
189 190 4.941873 CCTTTTAGGCTCGTGTAATTTCCT 59.058 41.667 0.00 0.00 0.00 3.36
190 191 4.095932 CCCTTTTAGGCTCGTGTAATTTCC 59.904 45.833 0.00 0.00 32.73 3.13
191 192 4.698780 ACCCTTTTAGGCTCGTGTAATTTC 59.301 41.667 0.00 0.00 32.73 2.17
192 193 4.457949 CACCCTTTTAGGCTCGTGTAATTT 59.542 41.667 0.00 0.00 32.73 1.82
193 194 4.007659 CACCCTTTTAGGCTCGTGTAATT 58.992 43.478 0.00 0.00 32.73 1.40
194 195 3.606687 CACCCTTTTAGGCTCGTGTAAT 58.393 45.455 0.00 0.00 32.73 1.89
195 196 2.872842 GCACCCTTTTAGGCTCGTGTAA 60.873 50.000 0.00 0.00 32.73 2.41
196 197 1.338389 GCACCCTTTTAGGCTCGTGTA 60.338 52.381 0.00 0.00 32.73 2.90
197 198 0.605589 GCACCCTTTTAGGCTCGTGT 60.606 55.000 0.00 0.00 32.73 4.49
198 199 1.305930 GGCACCCTTTTAGGCTCGTG 61.306 60.000 0.00 0.00 32.73 4.35
199 200 1.002502 GGCACCCTTTTAGGCTCGT 60.003 57.895 0.00 0.00 32.73 4.18
200 201 0.394352 ATGGCACCCTTTTAGGCTCG 60.394 55.000 0.00 0.00 32.73 5.03
201 202 2.729028 TATGGCACCCTTTTAGGCTC 57.271 50.000 0.00 0.00 32.73 4.70
202 203 3.052944 TCAATATGGCACCCTTTTAGGCT 60.053 43.478 0.00 0.00 32.73 4.58
259 260 4.193826 TCTAGACAGGTTTGCAGTGATC 57.806 45.455 0.00 0.00 0.00 2.92
286 287 1.304381 TGGCTTGTCCAATGAGGCC 60.304 57.895 0.00 0.00 43.21 5.19
294 295 0.037326 CGCTAGTCTTGGCTTGTCCA 60.037 55.000 0.00 0.00 44.85 4.02
295 296 0.246635 TCGCTAGTCTTGGCTTGTCC 59.753 55.000 0.00 0.00 0.00 4.02
331 353 3.118920 TCAGTGTCCCATACGGTTATGTG 60.119 47.826 0.00 0.00 34.27 3.21
332 354 3.101437 TCAGTGTCCCATACGGTTATGT 58.899 45.455 0.00 0.00 34.27 2.29
334 356 2.698797 CCTCAGTGTCCCATACGGTTAT 59.301 50.000 0.00 0.00 0.00 1.89
335 357 2.104967 CCTCAGTGTCCCATACGGTTA 58.895 52.381 0.00 0.00 0.00 2.85
336 358 0.902531 CCTCAGTGTCCCATACGGTT 59.097 55.000 0.00 0.00 0.00 4.44
338 360 1.823295 CCCTCAGTGTCCCATACGG 59.177 63.158 0.00 0.00 0.00 4.02
339 361 1.144057 GCCCTCAGTGTCCCATACG 59.856 63.158 0.00 0.00 0.00 3.06
340 362 0.107654 GTGCCCTCAGTGTCCCATAC 60.108 60.000 0.00 0.00 0.00 2.39
341 363 0.546507 TGTGCCCTCAGTGTCCCATA 60.547 55.000 0.00 0.00 0.00 2.74
359 395 1.445871 TTACACTCTGCTGCATGCTG 58.554 50.000 20.33 19.80 43.37 4.41
361 397 2.223433 GGAATTACACTCTGCTGCATGC 60.223 50.000 11.82 11.82 43.25 4.06
374 410 6.938030 AGAAACGTGTAATTCTGGGAATTACA 59.062 34.615 27.54 27.54 45.51 2.41
375 411 7.373778 AGAAACGTGTAATTCTGGGAATTAC 57.626 36.000 24.48 24.48 41.24 1.89
376 412 9.158233 CTTAGAAACGTGTAATTCTGGGAATTA 57.842 33.333 9.89 8.17 36.59 1.40
377 413 7.120726 CCTTAGAAACGTGTAATTCTGGGAATT 59.879 37.037 9.89 9.86 36.59 2.17
379 415 5.935789 CCTTAGAAACGTGTAATTCTGGGAA 59.064 40.000 9.89 0.00 36.59 3.97
381 417 4.634443 CCCTTAGAAACGTGTAATTCTGGG 59.366 45.833 9.89 8.92 36.59 4.45
382 418 4.094442 GCCCTTAGAAACGTGTAATTCTGG 59.906 45.833 9.89 4.83 36.59 3.86
383 419 4.201685 CGCCCTTAGAAACGTGTAATTCTG 60.202 45.833 9.89 0.00 36.59 3.02
384 420 3.930848 CGCCCTTAGAAACGTGTAATTCT 59.069 43.478 5.61 5.61 39.19 2.40
385 421 3.928375 TCGCCCTTAGAAACGTGTAATTC 59.072 43.478 0.00 0.00 0.00 2.17
386 422 3.929094 TCGCCCTTAGAAACGTGTAATT 58.071 40.909 0.00 0.00 0.00 1.40
390 426 1.505425 GTTCGCCCTTAGAAACGTGT 58.495 50.000 0.00 0.00 0.00 4.49
394 430 1.538512 GGTTGGTTCGCCCTTAGAAAC 59.461 52.381 0.00 0.00 35.96 2.78
403 439 0.609681 TAACCCATGGTTGGTTCGCC 60.610 55.000 11.73 0.00 46.35 5.54
419 457 2.273370 TCGAGCGTTCTGGATGTAAC 57.727 50.000 0.00 0.00 0.00 2.50
442 480 6.650807 GTGTCCAGATATGACAAGTTCTTTGA 59.349 38.462 0.00 0.00 43.82 2.69
447 485 6.428159 ACAAAGTGTCCAGATATGACAAGTTC 59.572 38.462 0.00 0.00 43.82 3.01
501 864 4.859304 AAAGGATAAAACCAACGGGAAC 57.141 40.909 0.00 0.00 38.05 3.62
502 865 6.973460 TTTAAAGGATAAAACCAACGGGAA 57.027 33.333 0.00 0.00 38.05 3.97
503 866 7.452189 AGAATTTAAAGGATAAAACCAACGGGA 59.548 33.333 0.00 0.00 38.05 5.14
504 867 7.608153 AGAATTTAAAGGATAAAACCAACGGG 58.392 34.615 0.00 0.00 41.29 5.28
505 868 9.483916 AAAGAATTTAAAGGATAAAACCAACGG 57.516 29.630 0.00 0.00 35.86 4.44
517 880 9.142014 TGAGAACCAATGAAAGAATTTAAAGGA 57.858 29.630 0.00 0.00 39.27 3.36
518 881 9.933723 ATGAGAACCAATGAAAGAATTTAAAGG 57.066 29.630 0.00 0.00 39.27 3.11
532 895 9.655769 CGAATCTACAAAATATGAGAACCAATG 57.344 33.333 0.00 0.00 0.00 2.82
533 896 9.396022 ACGAATCTACAAAATATGAGAACCAAT 57.604 29.630 0.00 0.00 0.00 3.16
534 897 8.786826 ACGAATCTACAAAATATGAGAACCAA 57.213 30.769 0.00 0.00 0.00 3.67
535 898 8.786826 AACGAATCTACAAAATATGAGAACCA 57.213 30.769 0.00 0.00 0.00 3.67
573 936 9.511272 AACGAAGGGAGTACAAGTTATTTAAAT 57.489 29.630 5.89 5.89 0.00 1.40
574 937 8.907222 AACGAAGGGAGTACAAGTTATTTAAA 57.093 30.769 0.00 0.00 0.00 1.52
575 938 8.907222 AAACGAAGGGAGTACAAGTTATTTAA 57.093 30.769 0.00 0.00 0.00 1.52
576 939 8.370182 AGAAACGAAGGGAGTACAAGTTATTTA 58.630 33.333 0.00 0.00 0.00 1.40
577 940 7.222161 AGAAACGAAGGGAGTACAAGTTATTT 58.778 34.615 0.00 0.00 0.00 1.40
578 941 6.766429 AGAAACGAAGGGAGTACAAGTTATT 58.234 36.000 0.00 0.00 0.00 1.40
579 942 6.356186 AGAAACGAAGGGAGTACAAGTTAT 57.644 37.500 0.00 0.00 0.00 1.89
580 943 5.796424 AGAAACGAAGGGAGTACAAGTTA 57.204 39.130 0.00 0.00 0.00 2.24
581 944 4.684484 AGAAACGAAGGGAGTACAAGTT 57.316 40.909 0.00 0.00 0.00 2.66
582 945 5.796424 TTAGAAACGAAGGGAGTACAAGT 57.204 39.130 0.00 0.00 0.00 3.16
583 946 8.943909 ATATTTAGAAACGAAGGGAGTACAAG 57.056 34.615 0.00 0.00 0.00 3.16
588 951 8.979534 AGACTTATATTTAGAAACGAAGGGAGT 58.020 33.333 0.00 0.00 0.00 3.85
589 952 9.819267 AAGACTTATATTTAGAAACGAAGGGAG 57.181 33.333 0.00 0.00 0.00 4.30
618 981 9.961265 CCGTATGTAGTCATAGTAAAATCTTCA 57.039 33.333 0.00 0.00 37.23 3.02
621 984 8.298140 GCTCCGTATGTAGTCATAGTAAAATCT 58.702 37.037 0.00 0.00 37.23 2.40
622 985 8.080417 TGCTCCGTATGTAGTCATAGTAAAATC 58.920 37.037 0.00 0.00 37.23 2.17
623 986 7.948357 TGCTCCGTATGTAGTCATAGTAAAAT 58.052 34.615 0.00 0.00 37.23 1.82
624 987 7.337480 TGCTCCGTATGTAGTCATAGTAAAA 57.663 36.000 0.00 0.00 37.23 1.52
625 988 6.947644 TGCTCCGTATGTAGTCATAGTAAA 57.052 37.500 0.00 0.00 37.23 2.01
626 989 6.947644 TTGCTCCGTATGTAGTCATAGTAA 57.052 37.500 0.00 0.00 37.23 2.24
627 990 6.947644 TTTGCTCCGTATGTAGTCATAGTA 57.052 37.500 0.00 0.00 37.23 1.82
628 991 5.847111 TTTGCTCCGTATGTAGTCATAGT 57.153 39.130 0.00 0.00 37.23 2.12
629 992 6.923508 TCATTTTGCTCCGTATGTAGTCATAG 59.076 38.462 0.00 0.00 37.23 2.23
630 993 6.811954 TCATTTTGCTCCGTATGTAGTCATA 58.188 36.000 0.00 0.00 35.70 2.15
631 994 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
632 995 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
633 996 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
634 997 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
635 998 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
636 999 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
637 1000 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
638 1001 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
639 1002 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
640 1003 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
641 1004 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
642 1005 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
643 1006 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
644 1007 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
655 1018 6.037098 AGATGCGTTAAGAGTGTAGATTCAC 58.963 40.000 0.00 0.00 38.46 3.18
656 1019 6.208988 AGATGCGTTAAGAGTGTAGATTCA 57.791 37.500 0.00 0.00 0.00 2.57
660 1023 9.498176 TGTATATAGATGCGTTAAGAGTGTAGA 57.502 33.333 0.00 0.00 0.00 2.59
663 1026 8.244802 GGATGTATATAGATGCGTTAAGAGTGT 58.755 37.037 0.00 0.00 0.00 3.55
664 1027 7.429630 CGGATGTATATAGATGCGTTAAGAGTG 59.570 40.741 20.95 0.00 36.36 3.51
665 1028 7.473366 CGGATGTATATAGATGCGTTAAGAGT 58.527 38.462 20.95 0.00 36.36 3.24
666 1029 7.900299 CGGATGTATATAGATGCGTTAAGAG 57.100 40.000 20.95 0.00 36.36 2.85
673 1036 5.915196 CCACATACGGATGTATATAGATGCG 59.085 44.000 25.46 25.46 44.82 4.73
674 1037 5.692204 GCCACATACGGATGTATATAGATGC 59.308 44.000 14.23 2.82 44.82 3.91
675 1038 6.805713 TGCCACATACGGATGTATATAGATG 58.194 40.000 14.23 0.00 44.82 2.90
676 1039 6.040955 CCTGCCACATACGGATGTATATAGAT 59.959 42.308 14.23 0.00 44.82 1.98
677 1040 5.359860 CCTGCCACATACGGATGTATATAGA 59.640 44.000 14.23 0.00 44.82 1.98
678 1041 5.127194 ACCTGCCACATACGGATGTATATAG 59.873 44.000 14.23 9.40 44.82 1.31
679 1042 5.020795 ACCTGCCACATACGGATGTATATA 58.979 41.667 14.23 0.00 44.82 0.86
680 1043 3.838317 ACCTGCCACATACGGATGTATAT 59.162 43.478 14.23 0.00 44.82 0.86
681 1044 3.236047 ACCTGCCACATACGGATGTATA 58.764 45.455 14.23 1.74 44.82 1.47
682 1045 2.037251 GACCTGCCACATACGGATGTAT 59.963 50.000 14.23 0.00 44.82 2.29
683 1046 1.411246 GACCTGCCACATACGGATGTA 59.589 52.381 14.23 0.00 44.82 2.29
685 1048 0.177836 TGACCTGCCACATACGGATG 59.822 55.000 5.94 5.94 39.16 3.51
686 1049 0.908910 TTGACCTGCCACATACGGAT 59.091 50.000 0.00 0.00 0.00 4.18
687 1050 0.908910 ATTGACCTGCCACATACGGA 59.091 50.000 0.00 0.00 0.00 4.69
688 1051 2.158957 ACTATTGACCTGCCACATACGG 60.159 50.000 0.00 0.00 0.00 4.02
689 1052 2.866156 CACTATTGACCTGCCACATACG 59.134 50.000 0.00 0.00 0.00 3.06
690 1053 4.137116 TCACTATTGACCTGCCACATAC 57.863 45.455 0.00 0.00 0.00 2.39
691 1054 4.835284 TTCACTATTGACCTGCCACATA 57.165 40.909 0.00 0.00 0.00 2.29
692 1055 3.719268 TTCACTATTGACCTGCCACAT 57.281 42.857 0.00 0.00 0.00 3.21
693 1056 3.500448 TTTCACTATTGACCTGCCACA 57.500 42.857 0.00 0.00 0.00 4.17
694 1057 6.058183 AGATATTTCACTATTGACCTGCCAC 58.942 40.000 0.00 0.00 0.00 5.01
695 1058 6.252599 AGATATTTCACTATTGACCTGCCA 57.747 37.500 0.00 0.00 0.00 4.92
696 1059 9.944376 TTATAGATATTTCACTATTGACCTGCC 57.056 33.333 0.00 0.00 32.57 4.85
720 1083 9.991906 CCATCCGTTCCTAAATATAAGTCTTTA 57.008 33.333 0.00 0.00 0.00 1.85
721 1084 8.711170 TCCATCCGTTCCTAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
722 1085 8.258850 TCCATCCGTTCCTAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
723 1086 7.509659 ACTCCATCCGTTCCTAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
724 1087 7.668492 ACTCCATCCGTTCCTAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
725 1088 7.613551 ACTCCATCCGTTCCTAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
731 1094 9.862149 AAAAATATACTCCATCCGTTCCTAAAT 57.138 29.630 0.00 0.00 0.00 1.40
754 1117 6.581919 CACATCACGATCTTTGCACATAAAAA 59.418 34.615 0.00 0.00 0.00 1.94
755 1118 6.085573 CACATCACGATCTTTGCACATAAAA 58.914 36.000 0.00 0.00 0.00 1.52
756 1119 5.181056 ACACATCACGATCTTTGCACATAAA 59.819 36.000 0.00 0.00 0.00 1.40
757 1120 4.694982 ACACATCACGATCTTTGCACATAA 59.305 37.500 0.00 0.00 0.00 1.90
758 1121 4.252878 ACACATCACGATCTTTGCACATA 58.747 39.130 0.00 0.00 0.00 2.29
759 1122 3.076621 ACACATCACGATCTTTGCACAT 58.923 40.909 0.00 0.00 0.00 3.21
760 1123 2.493035 ACACATCACGATCTTTGCACA 58.507 42.857 0.00 0.00 0.00 4.57
761 1124 3.058983 TCAACACATCACGATCTTTGCAC 60.059 43.478 0.00 0.00 0.00 4.57
762 1125 3.137533 TCAACACATCACGATCTTTGCA 58.862 40.909 0.00 0.00 0.00 4.08
763 1126 3.425359 CCTCAACACATCACGATCTTTGC 60.425 47.826 0.00 0.00 0.00 3.68
764 1127 3.425359 GCCTCAACACATCACGATCTTTG 60.425 47.826 0.00 0.00 0.00 2.77
765 1128 2.744202 GCCTCAACACATCACGATCTTT 59.256 45.455 0.00 0.00 0.00 2.52
766 1129 2.350522 GCCTCAACACATCACGATCTT 58.649 47.619 0.00 0.00 0.00 2.40
767 1130 1.406069 GGCCTCAACACATCACGATCT 60.406 52.381 0.00 0.00 0.00 2.75
768 1131 1.009829 GGCCTCAACACATCACGATC 58.990 55.000 0.00 0.00 0.00 3.69
769 1132 0.324614 TGGCCTCAACACATCACGAT 59.675 50.000 3.32 0.00 0.00 3.73
770 1133 0.107643 TTGGCCTCAACACATCACGA 59.892 50.000 3.32 0.00 0.00 4.35
771 1134 1.131126 GATTGGCCTCAACACATCACG 59.869 52.381 3.32 0.00 35.48 4.35
772 1135 1.474077 GGATTGGCCTCAACACATCAC 59.526 52.381 3.32 0.00 35.48 3.06
773 1136 1.355381 AGGATTGGCCTCAACACATCA 59.645 47.619 3.32 0.00 46.97 3.07
774 1137 2.134789 AGGATTGGCCTCAACACATC 57.865 50.000 3.32 0.00 46.97 3.06
784 1147 5.143369 AGGAAATCATTAGAAGGATTGGCC 58.857 41.667 0.00 0.00 38.34 5.36
785 1148 8.414629 AATAGGAAATCATTAGAAGGATTGGC 57.585 34.615 3.14 0.11 38.34 4.52
786 1149 9.804977 AGAATAGGAAATCATTAGAAGGATTGG 57.195 33.333 3.14 0.00 38.34 3.16
815 1178 9.838339 AGTGTTAAAAGATCCCATTGATAGTAG 57.162 33.333 0.00 0.00 32.41 2.57
821 1184 6.778821 TCTGAGTGTTAAAAGATCCCATTGA 58.221 36.000 0.00 0.00 0.00 2.57
827 1190 7.878644 GGGGTATATCTGAGTGTTAAAAGATCC 59.121 40.741 0.00 0.00 31.90 3.36
828 1191 7.878644 GGGGGTATATCTGAGTGTTAAAAGATC 59.121 40.741 0.00 0.00 31.90 2.75
832 1195 7.519347 AAGGGGGTATATCTGAGTGTTAAAA 57.481 36.000 0.00 0.00 0.00 1.52
833 1196 8.626917 TTAAGGGGGTATATCTGAGTGTTAAA 57.373 34.615 0.00 0.00 0.00 1.52
835 1198 8.656806 CAATTAAGGGGGTATATCTGAGTGTTA 58.343 37.037 0.00 0.00 0.00 2.41
838 1201 7.316393 TCAATTAAGGGGGTATATCTGAGTG 57.684 40.000 0.00 0.00 0.00 3.51
840 1203 9.813826 AAATTCAATTAAGGGGGTATATCTGAG 57.186 33.333 0.00 0.00 0.00 3.35
849 1212 8.637108 ATCCAAATAAATTCAATTAAGGGGGT 57.363 30.769 0.00 0.00 0.00 4.95
860 1223 6.494842 GCTCGTGCTTATCCAAATAAATTCA 58.505 36.000 1.41 0.00 36.03 2.57
913 1404 9.132923 TGTTTGGTCTTAACAAATACCACATAA 57.867 29.630 0.00 0.00 41.58 1.90
914 1405 8.693120 TGTTTGGTCTTAACAAATACCACATA 57.307 30.769 0.00 0.00 41.58 2.29
915 1406 7.589958 TGTTTGGTCTTAACAAATACCACAT 57.410 32.000 0.00 0.00 41.58 3.21
916 1407 7.589958 ATGTTTGGTCTTAACAAATACCACA 57.410 32.000 0.00 0.00 41.58 4.17
917 1408 9.968870 TTTATGTTTGGTCTTAACAAATACCAC 57.031 29.630 0.00 0.00 41.58 4.16
918 1409 9.968870 GTTTATGTTTGGTCTTAACAAATACCA 57.031 29.630 0.00 0.00 39.68 3.25
919 1410 9.968870 TGTTTATGTTTGGTCTTAACAAATACC 57.031 29.630 0.00 0.00 39.68 2.73
940 2366 6.869913 CACTACTCTTTTCACCGGTATGTTTA 59.130 38.462 6.87 0.00 0.00 2.01
950 2376 5.552178 ACAATCTCCACTACTCTTTTCACC 58.448 41.667 0.00 0.00 0.00 4.02
968 2394 2.614057 CACGGAGCAATAGGGAACAATC 59.386 50.000 0.00 0.00 0.00 2.67
970 2396 1.349688 ACACGGAGCAATAGGGAACAA 59.650 47.619 0.00 0.00 0.00 2.83
976 2402 3.799232 GCCTAAGTACACGGAGCAATAGG 60.799 52.174 0.00 0.00 33.42 2.57
986 2412 0.650512 CGCCATTGCCTAAGTACACG 59.349 55.000 0.00 0.00 0.00 4.49
1005 3194 6.709397 TGAAGACATGAAGGATGCTATCATTC 59.291 38.462 0.00 13.21 46.89 2.67
1009 3198 6.485984 ACAATGAAGACATGAAGGATGCTATC 59.514 38.462 0.00 0.00 36.79 2.08
1023 3477 5.239306 AGCGATGAGAAAAACAATGAAGACA 59.761 36.000 0.00 0.00 0.00 3.41
1072 3526 1.521457 CATGTGTCACCGGCGCTAT 60.521 57.895 7.64 0.00 0.00 2.97
1251 3706 2.778299 AGCAACAAGGCGATGTAGAAA 58.222 42.857 0.00 0.00 39.27 2.52
1284 3742 5.938322 ACATTTATTGAAAGTAGTGGCACG 58.062 37.500 12.71 0.00 0.00 5.34
1325 3787 3.562108 TCTCCTCCCACCTCTTTAACT 57.438 47.619 0.00 0.00 0.00 2.24
1332 3794 3.970640 AGATAACAATCTCCTCCCACCTC 59.029 47.826 0.00 0.00 0.00 3.85
1453 3919 7.825761 CAGCTACATATGGTCCATTATGATCAA 59.174 37.037 10.33 0.00 0.00 2.57
1477 3944 5.911421 TGTGTCGAAATACGTTGAAATCAG 58.089 37.500 0.00 0.00 43.13 2.90
1495 3962 8.438676 AAATAGCTGGATTAACTGTATGTGTC 57.561 34.615 0.00 0.00 0.00 3.67
1648 4117 0.107654 GCTGTAGGCCGACTGGAATT 60.108 55.000 21.31 0.00 37.49 2.17
1700 4169 1.352156 GACCGACAGGACGCAATCAC 61.352 60.000 0.00 0.00 41.02 3.06
1718 4187 3.625897 CAGTCGGCCCACAGTGGA 61.626 66.667 22.37 0.00 40.96 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.