Multiple sequence alignment - TraesCS5A01G464000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G464000 chr5A 100.000 2831 0 0 1 2831 643856458 643853628 0.000000e+00 5228.0
1 TraesCS5A01G464000 chr5A 88.868 1617 144 23 977 2577 643735021 643733425 0.000000e+00 1956.0
2 TraesCS5A01G464000 chr5A 100.000 329 0 0 3135 3463 643853324 643852996 2.960000e-170 608.0
3 TraesCS5A01G464000 chr5A 88.496 452 45 6 917 1366 643453889 643453443 1.090000e-149 540.0
4 TraesCS5A01G464000 chr5A 87.059 170 16 6 2630 2796 643739394 643739228 1.640000e-43 187.0
5 TraesCS5A01G464000 chr5B 93.636 1587 83 9 845 2415 648260658 648259074 0.000000e+00 2355.0
6 TraesCS5A01G464000 chr5B 86.599 1470 168 17 959 2412 648180847 648179391 0.000000e+00 1596.0
7 TraesCS5A01G464000 chr5B 81.873 993 156 16 1459 2437 648135553 648134571 0.000000e+00 815.0
8 TraesCS5A01G464000 chr5B 83.981 849 122 10 1549 2393 648145330 648144492 0.000000e+00 802.0
9 TraesCS5A01G464000 chr5B 80.967 993 165 16 1459 2437 648122857 648123839 0.000000e+00 765.0
10 TraesCS5A01G464000 chr5B 87.838 444 50 2 917 1359 647994573 647994133 5.120000e-143 518.0
11 TraesCS5A01G464000 chr5B 84.984 313 26 11 208 511 648261145 648260845 7.270000e-77 298.0
12 TraesCS5A01G464000 chr5B 89.677 155 12 3 2630 2783 648257584 648257433 9.810000e-46 195.0
13 TraesCS5A01G464000 chr5B 87.324 71 8 1 2570 2640 648258940 648258871 2.870000e-11 80.5
14 TraesCS5A01G464000 chr5D 87.461 1922 168 29 665 2577 551244329 551242472 0.000000e+00 2146.0
15 TraesCS5A01G464000 chr5D 88.229 1750 160 26 845 2577 515466327 515464607 0.000000e+00 2049.0
16 TraesCS5A01G464000 chr5D 89.474 1558 118 15 899 2452 515568884 515567369 0.000000e+00 1927.0
17 TraesCS5A01G464000 chr5D 86.227 1198 135 22 962 2144 515424957 515423775 0.000000e+00 1271.0
18 TraesCS5A01G464000 chr5D 86.850 327 32 6 3144 3460 551240501 551240176 4.250000e-94 355.0
19 TraesCS5A01G464000 chr5D 93.846 65 3 1 2575 2639 551242265 551242202 2.840000e-16 97.1
20 TraesCS5A01G464000 chr6B 88.889 126 12 2 3 126 581872231 581872356 1.660000e-33 154.0
21 TraesCS5A01G464000 chr6B 87.097 124 14 2 5 126 713882620 713882497 4.660000e-29 139.0
22 TraesCS5A01G464000 chr1D 88.710 124 12 2 3 125 375373531 375373653 2.150000e-32 150.0
23 TraesCS5A01G464000 chr2B 87.302 126 15 1 1 125 195520080 195520205 3.600000e-30 143.0
24 TraesCS5A01G464000 chr7A 87.097 124 15 1 3 125 673004401 673004278 4.660000e-29 139.0
25 TraesCS5A01G464000 chr6D 86.508 126 15 2 3 126 38435510 38435385 1.680000e-28 137.0
26 TraesCS5A01G464000 chr6D 86.508 126 15 2 3 126 38448774 38448649 1.680000e-28 137.0
27 TraesCS5A01G464000 chr6A 86.614 127 14 3 1 125 129252551 129252676 1.680000e-28 137.0
28 TraesCS5A01G464000 chr1B 86.508 126 15 2 3 126 575708964 575708839 1.680000e-28 137.0
29 TraesCS5A01G464000 chr4A 86.957 69 2 7 120 184 621239743 621239808 1.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G464000 chr5A 643852996 643856458 3462 True 2918.000000 5228 100.000000 1 3463 2 chr5A.!!$R4 3462
1 TraesCS5A01G464000 chr5A 643733425 643735021 1596 True 1956.000000 1956 88.868000 977 2577 1 chr5A.!!$R2 1600
2 TraesCS5A01G464000 chr5B 648179391 648180847 1456 True 1596.000000 1596 86.599000 959 2412 1 chr5B.!!$R4 1453
3 TraesCS5A01G464000 chr5B 648134571 648135553 982 True 815.000000 815 81.873000 1459 2437 1 chr5B.!!$R2 978
4 TraesCS5A01G464000 chr5B 648144492 648145330 838 True 802.000000 802 83.981000 1549 2393 1 chr5B.!!$R3 844
5 TraesCS5A01G464000 chr5B 648122857 648123839 982 False 765.000000 765 80.967000 1459 2437 1 chr5B.!!$F1 978
6 TraesCS5A01G464000 chr5B 648257433 648261145 3712 True 732.125000 2355 88.905250 208 2783 4 chr5B.!!$R5 2575
7 TraesCS5A01G464000 chr5D 515464607 515466327 1720 True 2049.000000 2049 88.229000 845 2577 1 chr5D.!!$R2 1732
8 TraesCS5A01G464000 chr5D 515567369 515568884 1515 True 1927.000000 1927 89.474000 899 2452 1 chr5D.!!$R3 1553
9 TraesCS5A01G464000 chr5D 515423775 515424957 1182 True 1271.000000 1271 86.227000 962 2144 1 chr5D.!!$R1 1182
10 TraesCS5A01G464000 chr5D 551240176 551244329 4153 True 866.033333 2146 89.385667 665 3460 3 chr5D.!!$R4 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.030235 GGACGCTTTGGGTTGTTGTC 59.970 55.0 0.00 0.0 0.00 3.18 F
290 291 0.035343 TGATCGGTCGGTCTGAGACT 60.035 55.0 12.92 0.0 38.58 3.24 F
1475 1537 0.539438 TTCACCAGGTTCCATGTGCC 60.539 55.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2268 1.432270 CGCCTTCTTCGCCTCCATTC 61.432 60.000 0.0 0.0 0.00 2.67 R
2311 2385 1.375908 GCACCTGCCACGAATCTCA 60.376 57.895 0.0 0.0 34.31 3.27 R
2808 4606 0.167908 CCACACACACACACACACAC 59.832 55.000 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.741425 CACATACATTCATCCTTACAAGCG 58.259 41.667 0.00 0.00 0.00 4.68
24 25 4.273480 ACATACATTCATCCTTACAAGCGC 59.727 41.667 0.00 0.00 0.00 5.92
25 26 2.710377 ACATTCATCCTTACAAGCGCA 58.290 42.857 11.47 0.00 0.00 6.09
26 27 2.420022 ACATTCATCCTTACAAGCGCAC 59.580 45.455 11.47 0.00 0.00 5.34
27 28 2.177394 TTCATCCTTACAAGCGCACA 57.823 45.000 11.47 0.00 0.00 4.57
28 29 1.438651 TCATCCTTACAAGCGCACAC 58.561 50.000 11.47 0.00 0.00 3.82
29 30 1.155889 CATCCTTACAAGCGCACACA 58.844 50.000 11.47 0.00 0.00 3.72
30 31 1.739466 CATCCTTACAAGCGCACACAT 59.261 47.619 11.47 0.00 0.00 3.21
31 32 1.155889 TCCTTACAAGCGCACACATG 58.844 50.000 11.47 2.69 0.00 3.21
41 42 3.177600 CACACATGCACGCCCTAC 58.822 61.111 0.00 0.00 0.00 3.18
42 43 2.046314 ACACATGCACGCCCTACC 60.046 61.111 0.00 0.00 0.00 3.18
43 44 2.824041 CACATGCACGCCCTACCC 60.824 66.667 0.00 0.00 0.00 3.69
44 45 4.109675 ACATGCACGCCCTACCCC 62.110 66.667 0.00 0.00 0.00 4.95
45 46 3.797353 CATGCACGCCCTACCCCT 61.797 66.667 0.00 0.00 0.00 4.79
46 47 2.041301 ATGCACGCCCTACCCCTA 60.041 61.111 0.00 0.00 0.00 3.53
47 48 1.461461 ATGCACGCCCTACCCCTAT 60.461 57.895 0.00 0.00 0.00 2.57
48 49 1.768684 ATGCACGCCCTACCCCTATG 61.769 60.000 0.00 0.00 0.00 2.23
49 50 3.148084 CACGCCCTACCCCTATGG 58.852 66.667 0.00 0.00 41.37 2.74
60 61 3.798794 CCCTATGGGCACATTCGAA 57.201 52.632 6.84 0.00 38.53 3.71
61 62 2.051334 CCCTATGGGCACATTCGAAA 57.949 50.000 6.84 0.00 38.53 3.46
62 63 1.949525 CCCTATGGGCACATTCGAAAG 59.050 52.381 6.84 0.00 38.53 2.62
63 64 2.421388 CCCTATGGGCACATTCGAAAGA 60.421 50.000 6.84 0.00 38.53 2.52
64 65 2.614057 CCTATGGGCACATTCGAAAGAC 59.386 50.000 6.84 0.00 41.84 3.01
65 66 2.496899 ATGGGCACATTCGAAAGACT 57.503 45.000 7.49 0.00 41.84 3.24
66 67 1.522668 TGGGCACATTCGAAAGACTG 58.477 50.000 7.49 0.84 45.23 3.51
67 68 1.071542 TGGGCACATTCGAAAGACTGA 59.928 47.619 7.49 0.00 42.73 3.41
68 69 1.734465 GGGCACATTCGAAAGACTGAG 59.266 52.381 7.49 0.00 42.73 3.35
69 70 2.517321 GCACATTCGAAAGACTGAGC 57.483 50.000 7.49 5.32 46.03 4.26
70 71 1.129437 GCACATTCGAAAGACTGAGCC 59.871 52.381 7.49 0.00 46.23 4.70
71 72 1.391485 CACATTCGAAAGACTGAGCCG 59.609 52.381 7.49 0.00 42.73 5.52
72 73 1.002366 CATTCGAAAGACTGAGCCGG 58.998 55.000 0.00 0.00 42.73 6.13
73 74 0.741221 ATTCGAAAGACTGAGCCGGC 60.741 55.000 21.89 21.89 41.84 6.13
74 75 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
75 76 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
76 77 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
77 78 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
78 79 2.565841 GAAAGACTGAGCCGGCATATT 58.434 47.619 31.54 7.63 0.00 1.28
79 80 3.728845 GAAAGACTGAGCCGGCATATTA 58.271 45.455 31.54 8.60 0.00 0.98
80 81 4.319177 GAAAGACTGAGCCGGCATATTAT 58.681 43.478 31.54 6.18 0.00 1.28
81 82 3.601443 AGACTGAGCCGGCATATTATC 57.399 47.619 31.54 16.99 0.00 1.75
82 83 3.169099 AGACTGAGCCGGCATATTATCT 58.831 45.455 31.54 19.47 0.00 1.98
83 84 3.580458 AGACTGAGCCGGCATATTATCTT 59.420 43.478 31.54 3.33 0.00 2.40
84 85 3.668447 ACTGAGCCGGCATATTATCTTG 58.332 45.455 31.54 14.73 0.00 3.02
85 86 3.324846 ACTGAGCCGGCATATTATCTTGA 59.675 43.478 31.54 0.00 0.00 3.02
86 87 3.930336 TGAGCCGGCATATTATCTTGAG 58.070 45.455 31.54 0.00 0.00 3.02
87 88 3.578282 TGAGCCGGCATATTATCTTGAGA 59.422 43.478 31.54 0.00 0.00 3.27
88 89 4.223700 TGAGCCGGCATATTATCTTGAGAT 59.776 41.667 31.54 0.06 38.51 2.75
89 90 5.171339 AGCCGGCATATTATCTTGAGATT 57.829 39.130 31.54 0.00 36.05 2.40
90 91 5.564550 AGCCGGCATATTATCTTGAGATTT 58.435 37.500 31.54 0.00 36.05 2.17
91 92 6.711277 AGCCGGCATATTATCTTGAGATTTA 58.289 36.000 31.54 0.00 36.05 1.40
92 93 6.595716 AGCCGGCATATTATCTTGAGATTTAC 59.404 38.462 31.54 0.00 36.05 2.01
93 94 6.455646 GCCGGCATATTATCTTGAGATTTACG 60.456 42.308 24.80 0.00 36.05 3.18
94 95 6.811665 CCGGCATATTATCTTGAGATTTACGA 59.188 38.462 0.00 0.00 36.05 3.43
95 96 7.330946 CCGGCATATTATCTTGAGATTTACGAA 59.669 37.037 0.00 0.00 36.05 3.85
96 97 8.376203 CGGCATATTATCTTGAGATTTACGAAG 58.624 37.037 0.00 0.00 36.05 3.79
97 98 9.209175 GGCATATTATCTTGAGATTTACGAAGT 57.791 33.333 0.00 0.00 39.31 3.01
102 103 9.877178 ATTATCTTGAGATTTACGAAGTCACTT 57.123 29.630 0.00 0.00 37.74 3.16
104 105 8.918961 ATCTTGAGATTTACGAAGTCACTTAG 57.081 34.615 0.00 0.00 43.93 2.18
105 106 7.313646 TCTTGAGATTTACGAAGTCACTTAGG 58.686 38.462 2.47 0.00 43.93 2.69
106 107 6.585695 TGAGATTTACGAAGTCACTTAGGT 57.414 37.500 2.47 1.08 43.93 3.08
107 108 6.387465 TGAGATTTACGAAGTCACTTAGGTG 58.613 40.000 2.47 0.00 43.93 4.00
108 109 5.169295 AGATTTACGAAGTCACTTAGGTGC 58.831 41.667 2.47 0.00 43.93 5.01
109 110 3.308438 TTACGAAGTCACTTAGGTGCC 57.692 47.619 2.47 0.00 43.93 5.01
110 111 1.339097 ACGAAGTCACTTAGGTGCCT 58.661 50.000 2.47 0.00 42.72 4.75
111 112 1.272769 ACGAAGTCACTTAGGTGCCTC 59.727 52.381 2.47 0.00 42.72 4.70
112 113 1.732732 CGAAGTCACTTAGGTGCCTCG 60.733 57.143 0.00 4.71 42.72 4.63
113 114 1.272769 GAAGTCACTTAGGTGCCTCGT 59.727 52.381 0.00 0.00 42.72 4.18
114 115 0.889306 AGTCACTTAGGTGCCTCGTC 59.111 55.000 0.00 0.00 42.72 4.20
115 116 0.601558 GTCACTTAGGTGCCTCGTCA 59.398 55.000 0.00 0.00 42.72 4.35
116 117 1.204941 GTCACTTAGGTGCCTCGTCAT 59.795 52.381 0.00 0.00 42.72 3.06
117 118 1.476891 TCACTTAGGTGCCTCGTCATC 59.523 52.381 0.00 0.00 42.72 2.92
118 119 0.456221 ACTTAGGTGCCTCGTCATCG 59.544 55.000 0.00 0.00 38.55 3.84
119 120 0.738975 CTTAGGTGCCTCGTCATCGA 59.261 55.000 0.00 0.00 44.12 3.59
120 121 0.454600 TTAGGTGCCTCGTCATCGAC 59.545 55.000 0.00 0.00 41.35 4.20
129 130 4.496670 GTCATCGACGGAACCCTG 57.503 61.111 0.00 0.00 0.00 4.45
130 131 1.888018 GTCATCGACGGAACCCTGA 59.112 57.895 0.00 0.00 0.00 3.86
131 132 0.460311 GTCATCGACGGAACCCTGAT 59.540 55.000 0.00 0.00 0.00 2.90
132 133 0.459899 TCATCGACGGAACCCTGATG 59.540 55.000 0.00 0.00 38.18 3.07
133 134 0.530650 CATCGACGGAACCCTGATGG 60.531 60.000 0.00 0.00 41.37 3.51
134 135 0.686441 ATCGACGGAACCCTGATGGA 60.686 55.000 0.00 0.00 38.00 3.41
135 136 1.153628 CGACGGAACCCTGATGGAC 60.154 63.158 0.00 0.00 38.00 4.02
136 137 1.605058 CGACGGAACCCTGATGGACT 61.605 60.000 0.00 0.00 38.00 3.85
137 138 0.108138 GACGGAACCCTGATGGACTG 60.108 60.000 0.00 0.00 38.00 3.51
138 139 0.544357 ACGGAACCCTGATGGACTGA 60.544 55.000 0.00 0.00 38.00 3.41
139 140 0.613260 CGGAACCCTGATGGACTGAA 59.387 55.000 0.00 0.00 38.00 3.02
140 141 1.003118 CGGAACCCTGATGGACTGAAA 59.997 52.381 0.00 0.00 38.00 2.69
141 142 2.552155 CGGAACCCTGATGGACTGAAAA 60.552 50.000 0.00 0.00 38.00 2.29
142 143 3.701664 GGAACCCTGATGGACTGAAAAT 58.298 45.455 0.00 0.00 38.00 1.82
143 144 4.625324 CGGAACCCTGATGGACTGAAAATA 60.625 45.833 0.00 0.00 38.00 1.40
144 145 4.640647 GGAACCCTGATGGACTGAAAATAC 59.359 45.833 0.00 0.00 38.00 1.89
145 146 4.236527 ACCCTGATGGACTGAAAATACC 57.763 45.455 0.00 0.00 38.00 2.73
146 147 3.591527 ACCCTGATGGACTGAAAATACCA 59.408 43.478 0.00 0.00 38.00 3.25
147 148 3.947834 CCCTGATGGACTGAAAATACCAC 59.052 47.826 0.00 0.00 35.19 4.16
148 149 4.324563 CCCTGATGGACTGAAAATACCACT 60.325 45.833 0.00 0.00 35.19 4.00
149 150 4.637534 CCTGATGGACTGAAAATACCACTG 59.362 45.833 0.00 0.00 35.19 3.66
150 151 5.241403 TGATGGACTGAAAATACCACTGT 57.759 39.130 0.00 0.00 35.19 3.55
151 152 5.630121 TGATGGACTGAAAATACCACTGTT 58.370 37.500 0.00 0.00 35.19 3.16
152 153 5.705441 TGATGGACTGAAAATACCACTGTTC 59.295 40.000 0.00 0.00 35.19 3.18
153 154 4.394729 TGGACTGAAAATACCACTGTTCC 58.605 43.478 0.00 0.00 0.00 3.62
154 155 4.104102 TGGACTGAAAATACCACTGTTCCT 59.896 41.667 0.00 0.00 0.00 3.36
155 156 4.695928 GGACTGAAAATACCACTGTTCCTC 59.304 45.833 0.00 0.00 0.00 3.71
156 157 5.513267 GGACTGAAAATACCACTGTTCCTCT 60.513 44.000 0.00 0.00 0.00 3.69
157 158 6.295688 GGACTGAAAATACCACTGTTCCTCTA 60.296 42.308 0.00 0.00 0.00 2.43
158 159 6.702329 ACTGAAAATACCACTGTTCCTCTAG 58.298 40.000 0.00 0.00 0.00 2.43
159 160 5.488341 TGAAAATACCACTGTTCCTCTAGC 58.512 41.667 0.00 0.00 0.00 3.42
160 161 4.489306 AAATACCACTGTTCCTCTAGCC 57.511 45.455 0.00 0.00 0.00 3.93
161 162 2.615986 TACCACTGTTCCTCTAGCCA 57.384 50.000 0.00 0.00 0.00 4.75
162 163 1.958288 ACCACTGTTCCTCTAGCCAT 58.042 50.000 0.00 0.00 0.00 4.40
163 164 1.834263 ACCACTGTTCCTCTAGCCATC 59.166 52.381 0.00 0.00 0.00 3.51
164 165 1.139853 CCACTGTTCCTCTAGCCATCC 59.860 57.143 0.00 0.00 0.00 3.51
165 166 1.833630 CACTGTTCCTCTAGCCATCCA 59.166 52.381 0.00 0.00 0.00 3.41
166 167 2.114616 ACTGTTCCTCTAGCCATCCAG 58.885 52.381 0.00 0.00 0.00 3.86
167 168 2.292521 ACTGTTCCTCTAGCCATCCAGA 60.293 50.000 0.00 0.00 0.00 3.86
168 169 2.102252 CTGTTCCTCTAGCCATCCAGAC 59.898 54.545 0.00 0.00 0.00 3.51
169 170 2.111384 GTTCCTCTAGCCATCCAGACA 58.889 52.381 0.00 0.00 0.00 3.41
170 171 1.781786 TCCTCTAGCCATCCAGACAC 58.218 55.000 0.00 0.00 0.00 3.67
171 172 1.007118 TCCTCTAGCCATCCAGACACA 59.993 52.381 0.00 0.00 0.00 3.72
172 173 1.833630 CCTCTAGCCATCCAGACACAA 59.166 52.381 0.00 0.00 0.00 3.33
173 174 2.158986 CCTCTAGCCATCCAGACACAAG 60.159 54.545 0.00 0.00 0.00 3.16
174 175 2.499289 CTCTAGCCATCCAGACACAAGT 59.501 50.000 0.00 0.00 0.00 3.16
175 176 2.906389 TCTAGCCATCCAGACACAAGTT 59.094 45.455 0.00 0.00 0.00 2.66
176 177 1.901591 AGCCATCCAGACACAAGTTG 58.098 50.000 0.00 0.00 0.00 3.16
177 178 0.883833 GCCATCCAGACACAAGTTGG 59.116 55.000 7.96 0.00 0.00 3.77
178 179 1.819305 GCCATCCAGACACAAGTTGGT 60.819 52.381 7.96 2.21 33.65 3.67
179 180 2.586425 CCATCCAGACACAAGTTGGTT 58.414 47.619 7.96 0.00 33.65 3.67
180 181 2.554032 CCATCCAGACACAAGTTGGTTC 59.446 50.000 7.96 2.92 33.65 3.62
181 182 1.948104 TCCAGACACAAGTTGGTTCG 58.052 50.000 7.96 0.00 33.65 3.95
182 183 0.307760 CCAGACACAAGTTGGTTCGC 59.692 55.000 7.96 0.00 0.00 4.70
183 184 1.013596 CAGACACAAGTTGGTTCGCA 58.986 50.000 7.96 0.00 0.00 5.10
184 185 1.603802 CAGACACAAGTTGGTTCGCAT 59.396 47.619 7.96 0.00 0.00 4.73
185 186 1.873591 AGACACAAGTTGGTTCGCATC 59.126 47.619 7.96 0.00 0.00 3.91
186 187 1.873591 GACACAAGTTGGTTCGCATCT 59.126 47.619 7.96 0.00 0.00 2.90
187 188 1.873591 ACACAAGTTGGTTCGCATCTC 59.126 47.619 7.96 0.00 0.00 2.75
188 189 1.872952 CACAAGTTGGTTCGCATCTCA 59.127 47.619 7.96 0.00 0.00 3.27
189 190 2.290367 CACAAGTTGGTTCGCATCTCAA 59.710 45.455 7.96 0.00 0.00 3.02
190 191 2.948979 ACAAGTTGGTTCGCATCTCAAA 59.051 40.909 7.96 0.00 0.00 2.69
191 192 3.003689 ACAAGTTGGTTCGCATCTCAAAG 59.996 43.478 7.96 0.00 0.00 2.77
192 193 1.537202 AGTTGGTTCGCATCTCAAAGC 59.463 47.619 0.00 0.00 0.00 3.51
193 194 1.266718 GTTGGTTCGCATCTCAAAGCA 59.733 47.619 0.00 0.00 0.00 3.91
194 195 1.603456 TGGTTCGCATCTCAAAGCAA 58.397 45.000 0.00 0.00 0.00 3.91
195 196 1.266718 TGGTTCGCATCTCAAAGCAAC 59.733 47.619 0.00 0.00 0.00 4.17
196 197 1.537202 GGTTCGCATCTCAAAGCAACT 59.463 47.619 0.00 0.00 0.00 3.16
197 198 2.030805 GGTTCGCATCTCAAAGCAACTT 60.031 45.455 0.00 0.00 0.00 2.66
198 199 2.975410 TCGCATCTCAAAGCAACTTG 57.025 45.000 0.00 0.00 0.00 3.16
199 200 1.536766 TCGCATCTCAAAGCAACTTGG 59.463 47.619 0.00 0.00 0.00 3.61
200 201 1.536766 CGCATCTCAAAGCAACTTGGA 59.463 47.619 0.00 0.00 0.00 3.53
201 202 2.666619 CGCATCTCAAAGCAACTTGGAC 60.667 50.000 0.00 0.00 0.00 4.02
202 203 2.666619 GCATCTCAAAGCAACTTGGACG 60.667 50.000 0.00 0.00 0.00 4.79
203 204 0.944386 TCTCAAAGCAACTTGGACGC 59.056 50.000 0.00 0.00 0.00 5.19
204 205 0.947244 CTCAAAGCAACTTGGACGCT 59.053 50.000 0.00 0.00 37.68 5.07
217 218 0.030235 GGACGCTTTGGGTTGTTGTC 59.970 55.000 0.00 0.00 0.00 3.18
234 235 0.172803 GTCGTCAACGCCTCTATGGT 59.827 55.000 0.00 0.00 39.60 3.55
249 250 0.322816 ATGGTGCAGGTGATGACCAC 60.323 55.000 3.51 0.00 45.98 4.16
255 256 1.473965 GCAGGTGATGACCACGATCAT 60.474 52.381 3.51 0.00 45.98 2.45
256 257 2.910199 CAGGTGATGACCACGATCATT 58.090 47.619 3.51 0.00 45.98 2.57
274 275 6.404293 CGATCATTTTTCCGGGTTACTTTGAT 60.404 38.462 0.00 2.29 0.00 2.57
275 276 6.262193 TCATTTTTCCGGGTTACTTTGATC 57.738 37.500 0.00 0.00 0.00 2.92
276 277 4.752661 TTTTTCCGGGTTACTTTGATCG 57.247 40.909 0.00 0.00 0.00 3.69
277 278 2.389962 TTCCGGGTTACTTTGATCGG 57.610 50.000 0.00 0.00 38.92 4.18
278 279 1.269012 TCCGGGTTACTTTGATCGGT 58.731 50.000 0.00 0.00 38.70 4.69
279 280 1.205417 TCCGGGTTACTTTGATCGGTC 59.795 52.381 0.00 0.00 38.70 4.79
280 281 1.274596 CGGGTTACTTTGATCGGTCG 58.725 55.000 0.00 0.00 0.00 4.79
281 282 1.648504 GGGTTACTTTGATCGGTCGG 58.351 55.000 0.00 0.00 0.00 4.79
282 283 1.066645 GGGTTACTTTGATCGGTCGGT 60.067 52.381 0.00 0.00 0.00 4.69
283 284 2.265683 GGTTACTTTGATCGGTCGGTC 58.734 52.381 0.00 0.00 0.00 4.79
284 285 2.094338 GGTTACTTTGATCGGTCGGTCT 60.094 50.000 5.22 0.00 0.00 3.85
286 287 1.254026 ACTTTGATCGGTCGGTCTGA 58.746 50.000 5.22 0.00 35.75 3.27
287 288 1.202582 ACTTTGATCGGTCGGTCTGAG 59.797 52.381 5.22 5.49 34.66 3.35
288 289 1.472878 CTTTGATCGGTCGGTCTGAGA 59.527 52.381 5.22 0.00 34.66 3.27
289 290 0.809385 TTGATCGGTCGGTCTGAGAC 59.191 55.000 3.47 3.47 37.86 3.36
290 291 0.035343 TGATCGGTCGGTCTGAGACT 60.035 55.000 12.92 0.00 38.58 3.24
291 292 1.208776 TGATCGGTCGGTCTGAGACTA 59.791 52.381 12.92 0.00 38.58 2.59
303 304 0.976641 TGAGACTACAAGTGGGCTGG 59.023 55.000 0.00 0.00 25.46 4.85
333 334 5.418676 CAAAATTGTCACCAACCATATCCC 58.581 41.667 0.00 0.00 32.26 3.85
352 353 5.414789 TCCCTCATGATCGTGAGTTTAAA 57.585 39.130 32.91 16.68 43.22 1.52
353 354 5.419542 TCCCTCATGATCGTGAGTTTAAAG 58.580 41.667 32.91 20.87 43.22 1.85
354 355 4.572389 CCCTCATGATCGTGAGTTTAAAGG 59.428 45.833 32.91 24.53 43.22 3.11
355 356 4.034510 CCTCATGATCGTGAGTTTAAAGGC 59.965 45.833 32.91 0.00 43.22 4.35
360 361 4.819630 TGATCGTGAGTTTAAAGGCTGTTT 59.180 37.500 0.00 0.00 0.00 2.83
398 405 2.174764 GTAGAGTACATGTGACGTGCG 58.825 52.381 9.11 0.00 0.00 5.34
402 409 1.538512 AGTACATGTGACGTGCGTACT 59.461 47.619 9.11 3.65 38.30 2.73
415 422 6.742718 TGACGTGCGTACTTATTTTCTACTAC 59.257 38.462 0.00 0.00 0.00 2.73
417 424 7.083858 ACGTGCGTACTTATTTTCTACTACAA 58.916 34.615 1.24 0.00 0.00 2.41
419 426 7.482743 CGTGCGTACTTATTTTCTACTACAAGA 59.517 37.037 1.24 0.00 0.00 3.02
420 427 8.582096 GTGCGTACTTATTTTCTACTACAAGAC 58.418 37.037 0.00 0.00 0.00 3.01
421 428 8.298854 TGCGTACTTATTTTCTACTACAAGACA 58.701 33.333 0.00 0.00 0.00 3.41
486 496 6.028368 GCATCATGCATGATATCAAAGTAGC 58.972 40.000 35.47 27.07 45.23 3.58
493 503 6.938596 TGCATGATATCAAAGTAGCAGCTAAT 59.061 34.615 9.99 0.00 0.00 1.73
494 504 7.118825 TGCATGATATCAAAGTAGCAGCTAATC 59.881 37.037 9.99 2.50 0.00 1.75
495 505 7.333921 GCATGATATCAAAGTAGCAGCTAATCT 59.666 37.037 9.99 0.00 0.00 2.40
496 506 9.866798 CATGATATCAAAGTAGCAGCTAATCTA 57.133 33.333 9.99 0.00 0.00 1.98
509 519 5.457799 GCAGCTAATCTAAATCGTCAACGTA 59.542 40.000 2.09 0.00 40.80 3.57
510 520 6.144080 GCAGCTAATCTAAATCGTCAACGTAT 59.856 38.462 2.09 0.00 40.80 3.06
511 521 7.325338 GCAGCTAATCTAAATCGTCAACGTATA 59.675 37.037 2.09 0.00 40.80 1.47
512 522 9.343103 CAGCTAATCTAAATCGTCAACGTATAT 57.657 33.333 2.09 0.00 40.80 0.86
513 523 9.909644 AGCTAATCTAAATCGTCAACGTATATT 57.090 29.630 2.09 0.00 40.80 1.28
522 532 8.922058 AATCGTCAACGTATATTACTTCAAGT 57.078 30.769 0.00 0.00 40.80 3.16
523 533 8.922058 ATCGTCAACGTATATTACTTCAAGTT 57.078 30.769 0.00 0.00 40.80 2.66
524 534 8.746922 TCGTCAACGTATATTACTTCAAGTTT 57.253 30.769 0.00 0.00 40.80 2.66
525 535 9.838975 TCGTCAACGTATATTACTTCAAGTTTA 57.161 29.630 0.00 0.00 40.80 2.01
538 548 9.871175 TTACTTCAAGTTTAGGATTTAGGGTTT 57.129 29.630 0.00 0.00 0.00 3.27
540 550 9.516546 ACTTCAAGTTTAGGATTTAGGGTTTAG 57.483 33.333 0.00 0.00 0.00 1.85
541 551 9.734984 CTTCAAGTTTAGGATTTAGGGTTTAGA 57.265 33.333 0.00 0.00 0.00 2.10
601 611 8.824756 TGTTATTCTCATACACTACTCCTCTT 57.175 34.615 0.00 0.00 0.00 2.85
602 612 9.256228 TGTTATTCTCATACACTACTCCTCTTT 57.744 33.333 0.00 0.00 0.00 2.52
603 613 9.522804 GTTATTCTCATACACTACTCCTCTTTG 57.477 37.037 0.00 0.00 0.00 2.77
604 614 7.726033 ATTCTCATACACTACTCCTCTTTGT 57.274 36.000 0.00 0.00 0.00 2.83
605 615 8.824756 ATTCTCATACACTACTCCTCTTTGTA 57.175 34.615 0.00 0.00 0.00 2.41
606 616 8.824756 TTCTCATACACTACTCCTCTTTGTAT 57.175 34.615 0.00 0.00 34.42 2.29
607 617 8.453238 TCTCATACACTACTCCTCTTTGTATC 57.547 38.462 0.00 0.00 32.30 2.24
608 618 8.053355 TCTCATACACTACTCCTCTTTGTATCA 58.947 37.037 0.00 0.00 32.30 2.15
609 619 8.768501 TCATACACTACTCCTCTTTGTATCAT 57.231 34.615 0.00 0.00 32.30 2.45
610 620 8.633561 TCATACACTACTCCTCTTTGTATCATG 58.366 37.037 0.00 0.00 32.30 3.07
611 621 5.665459 ACACTACTCCTCTTTGTATCATGC 58.335 41.667 0.00 0.00 0.00 4.06
612 622 5.053145 CACTACTCCTCTTTGTATCATGCC 58.947 45.833 0.00 0.00 0.00 4.40
613 623 3.185246 ACTCCTCTTTGTATCATGCCG 57.815 47.619 0.00 0.00 0.00 5.69
614 624 1.869767 CTCCTCTTTGTATCATGCCGC 59.130 52.381 0.00 0.00 0.00 6.53
615 625 0.947244 CCTCTTTGTATCATGCCGCC 59.053 55.000 0.00 0.00 0.00 6.13
616 626 1.475751 CCTCTTTGTATCATGCCGCCT 60.476 52.381 0.00 0.00 0.00 5.52
617 627 2.292267 CTCTTTGTATCATGCCGCCTT 58.708 47.619 0.00 0.00 0.00 4.35
618 628 2.684881 CTCTTTGTATCATGCCGCCTTT 59.315 45.455 0.00 0.00 0.00 3.11
619 629 3.088532 TCTTTGTATCATGCCGCCTTTT 58.911 40.909 0.00 0.00 0.00 2.27
620 630 3.509575 TCTTTGTATCATGCCGCCTTTTT 59.490 39.130 0.00 0.00 0.00 1.94
649 659 9.647797 TTTTAGAGTACGCAAATTCATTCTAGA 57.352 29.630 0.00 0.00 0.00 2.43
651 661 9.817809 TTAGAGTACGCAAATTCATTCTAGAAT 57.182 29.630 12.37 12.37 39.81 2.40
678 688 2.485426 TGTTTACTACCACTCCGTCGAG 59.515 50.000 0.00 0.00 42.32 4.04
679 689 1.742761 TTACTACCACTCCGTCGAGG 58.257 55.000 0.00 0.00 40.77 4.63
687 697 3.856309 TCCGTCGAGGATCATGGG 58.144 61.111 6.70 0.00 45.98 4.00
690 700 1.832608 CGTCGAGGATCATGGGGGA 60.833 63.158 0.00 0.00 33.17 4.81
691 701 1.810606 CGTCGAGGATCATGGGGGAG 61.811 65.000 0.00 0.00 33.17 4.30
692 702 1.152247 TCGAGGATCATGGGGGAGG 60.152 63.158 0.00 0.00 33.17 4.30
725 735 2.223595 CCGCTGGACATACTCTACACAG 60.224 54.545 0.00 0.00 0.00 3.66
726 736 2.796383 CGCTGGACATACTCTACACAGC 60.796 54.545 0.00 0.00 44.52 4.40
727 737 2.166459 GCTGGACATACTCTACACAGCA 59.834 50.000 8.68 0.00 46.51 4.41
728 738 3.736433 GCTGGACATACTCTACACAGCAG 60.736 52.174 8.68 0.00 46.51 4.24
733 745 5.425577 ACATACTCTACACAGCAGTATCG 57.574 43.478 0.00 0.00 32.11 2.92
768 780 3.446799 GCAGATTGCAAATGGCGATAAA 58.553 40.909 1.71 0.00 46.90 1.40
769 781 4.053295 GCAGATTGCAAATGGCGATAAAT 58.947 39.130 1.71 0.00 46.90 1.40
779 791 6.307155 CAAATGGCGATAAATTAGTCGGATC 58.693 40.000 12.52 0.00 38.24 3.36
783 795 3.979495 GCGATAAATTAGTCGGATCGTGT 59.021 43.478 12.52 0.00 41.07 4.49
794 806 2.048222 ATCGTGTGTGGCGTGGAG 60.048 61.111 0.00 0.00 0.00 3.86
816 828 4.079710 GCTTATTTAACGTTCGACACTGC 58.920 43.478 2.82 0.00 0.00 4.40
817 829 2.848562 ATTTAACGTTCGACACTGCG 57.151 45.000 2.82 0.00 0.00 5.18
818 830 0.854062 TTTAACGTTCGACACTGCGG 59.146 50.000 2.82 0.00 0.00 5.69
841 853 7.007995 GCGGAAAATAAGAAACAAAATACTCCG 59.992 37.037 0.00 0.00 41.81 4.63
861 899 1.908340 ATCTGAGCAGAGCACCACCC 61.908 60.000 6.34 0.00 41.33 4.61
876 914 1.002134 ACCCATCTGCCGGTTCTTG 60.002 57.895 1.90 0.00 0.00 3.02
921 959 4.277593 CAGGCCGAGCTAGCTCCG 62.278 72.222 33.57 28.49 39.77 4.63
1026 1065 3.138798 TACCTGGAGCTCGCCGAC 61.139 66.667 7.83 0.00 0.00 4.79
1472 1534 0.850100 TGGTTCACCAGGTTCCATGT 59.150 50.000 0.00 0.00 42.01 3.21
1475 1537 0.539438 TTCACCAGGTTCCATGTGCC 60.539 55.000 0.00 0.00 0.00 5.01
1718 1789 1.302511 GGTGCCAAAGCTCCTCGAA 60.303 57.895 0.00 0.00 46.96 3.71
1755 1826 2.045926 GCCTTCTGCCACCGTCAT 60.046 61.111 0.00 0.00 0.00 3.06
2000 2074 2.268920 GCCGACATGCTTCCTCCA 59.731 61.111 0.00 0.00 0.00 3.86
2311 2385 2.683916 TTGACGGAGAGGCAAGGAT 58.316 52.632 0.00 0.00 44.35 3.24
2360 2434 3.067742 TGCAAGAGGTCGTAGCTAATACC 59.932 47.826 15.09 15.09 0.00 2.73
2361 2435 3.552478 GCAAGAGGTCGTAGCTAATACCC 60.552 52.174 17.99 11.71 32.10 3.69
2366 2440 2.358898 GGTCGTAGCTAATACCCAACGA 59.641 50.000 12.77 7.16 37.05 3.85
2395 2469 3.120338 AGGTACATTGACGAATTTGTGCG 60.120 43.478 2.13 0.00 0.00 5.34
2416 2490 2.341101 ACCTTCGATCTCACGGCGT 61.341 57.895 6.77 6.77 0.00 5.68
2469 2547 2.028883 GCCGCTACTTCGTGAACAATAC 59.971 50.000 0.00 0.00 0.00 1.89
2519 2597 2.137523 CATGTTTGCTTTTCCACAGCC 58.862 47.619 0.00 0.00 36.33 4.85
2573 2861 7.201696 GGTGATGAAACACTGAAACTGTAGAAA 60.202 37.037 0.00 0.00 40.22 2.52
2587 2875 8.918202 AAACTGTAGAAATGTAGAAATGGTCA 57.082 30.769 0.00 0.00 0.00 4.02
2604 2892 9.997482 GAAATGGTCAAGCGTATATTTTCTTTA 57.003 29.630 0.00 0.00 0.00 1.85
2651 4424 0.818040 ACGTGGTTTTGAGAGTGGCC 60.818 55.000 0.00 0.00 0.00 5.36
2692 4465 6.433404 ACTCGTAGAACATCTTGAAGACCTAA 59.567 38.462 0.00 0.00 34.09 2.69
2693 4466 7.122948 ACTCGTAGAACATCTTGAAGACCTAAT 59.877 37.037 0.00 0.00 34.09 1.73
2735 4508 3.165071 TCTCACAGTGGCTGATAGTTCA 58.835 45.455 0.00 0.00 35.18 3.18
2753 4526 4.702131 AGTTCAAGAAATTATTGCTCGCCT 59.298 37.500 0.00 0.00 0.00 5.52
2779 4552 5.131142 AGGGTCACTATCCTTTTGTGATAGG 59.869 44.000 10.93 0.00 43.86 2.57
2781 4554 6.049790 GGTCACTATCCTTTTGTGATAGGTC 58.950 44.000 10.93 2.80 43.86 3.85
2794 4592 3.879892 GTGATAGGTCTTGAGGGCATTTC 59.120 47.826 0.00 0.00 0.00 2.17
2795 4593 3.782523 TGATAGGTCTTGAGGGCATTTCT 59.217 43.478 0.00 0.00 0.00 2.52
2796 4594 2.797177 AGGTCTTGAGGGCATTTCTC 57.203 50.000 0.00 0.00 0.00 2.87
2797 4595 1.065854 AGGTCTTGAGGGCATTTCTCG 60.066 52.381 0.00 0.00 34.19 4.04
2798 4596 1.339151 GGTCTTGAGGGCATTTCTCGT 60.339 52.381 0.00 0.00 34.19 4.18
2799 4597 2.093658 GGTCTTGAGGGCATTTCTCGTA 60.094 50.000 0.00 0.00 34.19 3.43
2800 4598 3.596214 GTCTTGAGGGCATTTCTCGTAA 58.404 45.455 0.00 0.00 34.19 3.18
2801 4599 4.000988 GTCTTGAGGGCATTTCTCGTAAA 58.999 43.478 0.00 0.00 34.19 2.01
2802 4600 4.636206 GTCTTGAGGGCATTTCTCGTAAAT 59.364 41.667 0.00 0.00 34.19 1.40
2803 4601 5.123979 GTCTTGAGGGCATTTCTCGTAAATT 59.876 40.000 0.00 0.00 34.19 1.82
2804 4602 5.710099 TCTTGAGGGCATTTCTCGTAAATTT 59.290 36.000 0.00 0.00 34.19 1.82
2805 4603 5.975693 TGAGGGCATTTCTCGTAAATTTT 57.024 34.783 0.00 0.00 34.19 1.82
2806 4604 5.708948 TGAGGGCATTTCTCGTAAATTTTG 58.291 37.500 0.00 0.00 34.19 2.44
2807 4605 5.242838 TGAGGGCATTTCTCGTAAATTTTGT 59.757 36.000 0.00 0.00 34.19 2.83
2808 4606 5.469479 AGGGCATTTCTCGTAAATTTTGTG 58.531 37.500 0.00 0.00 0.00 3.33
2809 4607 5.010617 AGGGCATTTCTCGTAAATTTTGTGT 59.989 36.000 0.00 0.00 0.00 3.72
2810 4608 5.118510 GGGCATTTCTCGTAAATTTTGTGTG 59.881 40.000 0.00 0.00 0.00 3.82
2811 4609 5.689961 GGCATTTCTCGTAAATTTTGTGTGT 59.310 36.000 0.00 0.00 0.00 3.72
2812 4610 6.345723 GGCATTTCTCGTAAATTTTGTGTGTG 60.346 38.462 0.00 0.00 0.00 3.82
2813 4611 6.198216 GCATTTCTCGTAAATTTTGTGTGTGT 59.802 34.615 0.00 0.00 0.00 3.72
2814 4612 7.546277 CATTTCTCGTAAATTTTGTGTGTGTG 58.454 34.615 0.00 0.00 0.00 3.82
2815 4613 5.804692 TCTCGTAAATTTTGTGTGTGTGT 57.195 34.783 0.00 0.00 0.00 3.72
2816 4614 5.564768 TCTCGTAAATTTTGTGTGTGTGTG 58.435 37.500 0.00 0.00 0.00 3.82
2817 4615 5.122554 TCTCGTAAATTTTGTGTGTGTGTGT 59.877 36.000 0.00 0.00 0.00 3.72
2818 4616 5.089411 TCGTAAATTTTGTGTGTGTGTGTG 58.911 37.500 0.00 0.00 0.00 3.82
2819 4617 4.854291 CGTAAATTTTGTGTGTGTGTGTGT 59.146 37.500 0.00 0.00 0.00 3.72
2820 4618 5.219932 CGTAAATTTTGTGTGTGTGTGTGTG 60.220 40.000 0.00 0.00 0.00 3.82
2821 4619 3.932545 ATTTTGTGTGTGTGTGTGTGT 57.067 38.095 0.00 0.00 0.00 3.72
2822 4620 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
2823 4621 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2824 4622 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2825 4623 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2826 4624 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2827 4625 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2828 4626 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
2829 4627 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
2830 4628 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
3161 4967 4.747009 GCCCTTTGTCAAAGAAGTAGGAGT 60.747 45.833 24.09 0.00 41.02 3.85
3181 4987 3.322828 AGTTGAACCATTCATGCTTGCTT 59.677 39.130 0.00 0.00 39.84 3.91
3184 4990 0.248289 ACCATTCATGCTTGCTTGGC 59.752 50.000 15.88 0.00 31.41 4.52
3200 5006 2.394563 GGCGAGCAAAGAGAGGCAC 61.395 63.158 0.00 0.00 0.00 5.01
3202 5008 1.373497 CGAGCAAAGAGAGGCACGT 60.373 57.895 0.00 0.00 38.88 4.49
3206 5012 1.294659 GCAAAGAGAGGCACGTGAGG 61.295 60.000 22.23 0.00 0.00 3.86
3209 5015 0.605589 AAGAGAGGCACGTGAGGAAG 59.394 55.000 22.23 0.00 0.00 3.46
3215 5021 1.021390 GGCACGTGAGGAAGGTGATG 61.021 60.000 22.23 0.00 45.59 3.07
3223 5029 1.004745 GAGGAAGGTGATGGGCTTTGA 59.995 52.381 0.00 0.00 0.00 2.69
3230 5036 2.424956 GGTGATGGGCTTTGAAGTCATC 59.575 50.000 15.56 15.56 38.29 2.92
3248 5054 4.925646 GTCATCTTGTTTCCCATGCTTTTC 59.074 41.667 0.00 0.00 0.00 2.29
3249 5055 4.834496 TCATCTTGTTTCCCATGCTTTTCT 59.166 37.500 0.00 0.00 0.00 2.52
3261 5068 5.990996 CCCATGCTTTTCTTTTGCTTCTTTA 59.009 36.000 0.00 0.00 0.00 1.85
3287 5094 6.348213 GGCGTCTGTTAATTTGTTATGAGTGT 60.348 38.462 0.00 0.00 0.00 3.55
3289 5096 7.059488 GCGTCTGTTAATTTGTTATGAGTGTTG 59.941 37.037 0.00 0.00 0.00 3.33
3321 5128 2.493278 GCTAGGTGTTGGTGCATGAAAT 59.507 45.455 0.00 0.00 0.00 2.17
3322 5129 3.056607 GCTAGGTGTTGGTGCATGAAATT 60.057 43.478 0.00 0.00 0.00 1.82
3323 5130 4.561326 GCTAGGTGTTGGTGCATGAAATTT 60.561 41.667 0.00 0.00 0.00 1.82
3324 5131 4.420522 AGGTGTTGGTGCATGAAATTTT 57.579 36.364 0.00 0.00 0.00 1.82
3325 5132 4.779696 AGGTGTTGGTGCATGAAATTTTT 58.220 34.783 0.00 0.00 0.00 1.94
3354 5170 2.111162 CCAAAAGTCCGTTGTGGCA 58.889 52.632 0.00 0.00 37.80 4.92
3385 5201 3.954258 ACTTGGATTGCCTTAAGGTATGC 59.046 43.478 22.55 19.53 37.57 3.14
3427 5243 8.856153 TGGACTTTATATGAGCAACAAGTTTA 57.144 30.769 0.00 0.00 0.00 2.01
3432 5248 9.425893 CTTTATATGAGCAACAAGTTTATCACG 57.574 33.333 0.00 0.00 0.00 4.35
3436 5252 5.483811 TGAGCAACAAGTTTATCACGGATA 58.516 37.500 0.00 0.00 0.00 2.59
3440 5256 6.597672 AGCAACAAGTTTATCACGGATATTGA 59.402 34.615 10.25 0.00 0.00 2.57
3445 5261 9.661563 ACAAGTTTATCACGGATATTGAAAGTA 57.338 29.630 10.25 0.00 0.00 2.24
3460 5276 6.478512 TTGAAAGTAGTTTTTGGCAATCCT 57.521 33.333 0.00 0.00 0.00 3.24
3461 5277 6.478512 TGAAAGTAGTTTTTGGCAATCCTT 57.521 33.333 0.00 0.00 0.00 3.36
3462 5278 7.589958 TGAAAGTAGTTTTTGGCAATCCTTA 57.410 32.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.741425 CGCTTGTAAGGATGAATGTATGTG 58.259 41.667 0.00 0.00 0.00 3.21
1 2 4.273480 GCGCTTGTAAGGATGAATGTATGT 59.727 41.667 0.00 0.00 0.00 2.29
2 3 4.273235 TGCGCTTGTAAGGATGAATGTATG 59.727 41.667 9.73 0.00 0.00 2.39
3 4 4.273480 GTGCGCTTGTAAGGATGAATGTAT 59.727 41.667 9.73 0.00 0.00 2.29
4 5 3.621268 GTGCGCTTGTAAGGATGAATGTA 59.379 43.478 9.73 0.00 0.00 2.29
5 6 2.420022 GTGCGCTTGTAAGGATGAATGT 59.580 45.455 9.73 0.00 0.00 2.71
6 7 2.419673 TGTGCGCTTGTAAGGATGAATG 59.580 45.455 9.73 0.00 0.00 2.67
7 8 2.420022 GTGTGCGCTTGTAAGGATGAAT 59.580 45.455 9.73 0.00 0.00 2.57
8 9 1.804151 GTGTGCGCTTGTAAGGATGAA 59.196 47.619 9.73 0.00 0.00 2.57
9 10 1.270571 TGTGTGCGCTTGTAAGGATGA 60.271 47.619 9.73 0.00 0.00 2.92
10 11 1.155889 TGTGTGCGCTTGTAAGGATG 58.844 50.000 9.73 0.00 0.00 3.51
11 12 1.739466 CATGTGTGCGCTTGTAAGGAT 59.261 47.619 9.73 0.00 0.00 3.24
12 13 1.155889 CATGTGTGCGCTTGTAAGGA 58.844 50.000 9.73 0.00 0.00 3.36
13 14 0.454957 GCATGTGTGCGCTTGTAAGG 60.455 55.000 9.73 0.00 42.28 2.69
14 15 3.005823 GCATGTGTGCGCTTGTAAG 57.994 52.632 9.73 0.00 42.28 2.34
24 25 2.398554 GGTAGGGCGTGCATGTGTG 61.399 63.158 7.93 0.00 0.00 3.82
25 26 2.046314 GGTAGGGCGTGCATGTGT 60.046 61.111 7.93 0.00 0.00 3.72
26 27 2.824041 GGGTAGGGCGTGCATGTG 60.824 66.667 7.93 0.00 0.00 3.21
27 28 4.109675 GGGGTAGGGCGTGCATGT 62.110 66.667 7.93 0.00 0.00 3.21
28 29 1.768684 ATAGGGGTAGGGCGTGCATG 61.769 60.000 0.09 0.09 0.00 4.06
29 30 1.461461 ATAGGGGTAGGGCGTGCAT 60.461 57.895 0.00 0.00 0.00 3.96
30 31 2.041301 ATAGGGGTAGGGCGTGCA 60.041 61.111 0.00 0.00 0.00 4.57
31 32 2.426023 CATAGGGGTAGGGCGTGC 59.574 66.667 0.00 0.00 0.00 5.34
32 33 3.148084 CCATAGGGGTAGGGCGTG 58.852 66.667 0.00 0.00 0.00 5.34
43 44 2.614057 GTCTTTCGAATGTGCCCATAGG 59.386 50.000 10.48 0.00 0.00 2.57
44 45 3.310774 CAGTCTTTCGAATGTGCCCATAG 59.689 47.826 10.48 0.00 30.98 2.23
45 46 3.055458 TCAGTCTTTCGAATGTGCCCATA 60.055 43.478 10.48 0.00 36.65 2.74
46 47 2.086869 CAGTCTTTCGAATGTGCCCAT 58.913 47.619 10.48 0.00 30.98 4.00
47 48 1.071542 TCAGTCTTTCGAATGTGCCCA 59.928 47.619 10.48 0.00 36.65 5.36
48 49 1.734465 CTCAGTCTTTCGAATGTGCCC 59.266 52.381 10.48 0.00 36.65 5.36
49 50 1.129437 GCTCAGTCTTTCGAATGTGCC 59.871 52.381 10.48 1.67 44.35 5.01
50 51 2.517321 GCTCAGTCTTTCGAATGTGC 57.483 50.000 10.48 8.90 44.03 4.57
51 52 1.391485 CGGCTCAGTCTTTCGAATGTG 59.609 52.381 10.48 3.09 36.65 3.21
52 53 1.673033 CCGGCTCAGTCTTTCGAATGT 60.673 52.381 10.48 0.00 36.65 2.71
53 54 1.002366 CCGGCTCAGTCTTTCGAATG 58.998 55.000 0.00 0.78 36.62 2.67
54 55 0.741221 GCCGGCTCAGTCTTTCGAAT 60.741 55.000 22.15 0.00 0.00 3.34
55 56 1.374252 GCCGGCTCAGTCTTTCGAA 60.374 57.895 22.15 0.00 0.00 3.71
56 57 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
57 58 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
58 59 2.246719 ATATGCCGGCTCAGTCTTTC 57.753 50.000 29.70 0.00 0.00 2.62
59 60 2.717639 AATATGCCGGCTCAGTCTTT 57.282 45.000 29.70 8.64 0.00 2.52
60 61 3.580458 AGATAATATGCCGGCTCAGTCTT 59.420 43.478 29.70 14.20 0.00 3.01
61 62 3.169099 AGATAATATGCCGGCTCAGTCT 58.831 45.455 29.70 19.01 0.00 3.24
62 63 3.601443 AGATAATATGCCGGCTCAGTC 57.399 47.619 29.70 17.11 0.00 3.51
63 64 3.324846 TCAAGATAATATGCCGGCTCAGT 59.675 43.478 29.70 16.71 0.00 3.41
64 65 3.930336 TCAAGATAATATGCCGGCTCAG 58.070 45.455 29.70 12.02 0.00 3.35
65 66 3.578282 TCTCAAGATAATATGCCGGCTCA 59.422 43.478 29.70 15.91 0.00 4.26
66 67 4.193826 TCTCAAGATAATATGCCGGCTC 57.806 45.455 29.70 15.82 0.00 4.70
67 68 4.833478 ATCTCAAGATAATATGCCGGCT 57.167 40.909 29.70 15.76 32.01 5.52
68 69 5.886960 AAATCTCAAGATAATATGCCGGC 57.113 39.130 22.73 22.73 33.73 6.13
69 70 6.811665 TCGTAAATCTCAAGATAATATGCCGG 59.188 38.462 0.00 0.00 33.73 6.13
70 71 7.812309 TCGTAAATCTCAAGATAATATGCCG 57.188 36.000 0.00 0.00 33.73 5.69
71 72 9.209175 ACTTCGTAAATCTCAAGATAATATGCC 57.791 33.333 0.00 0.00 33.73 4.40
76 77 9.877178 AAGTGACTTCGTAAATCTCAAGATAAT 57.123 29.630 0.00 0.00 33.73 1.28
79 80 7.976734 CCTAAGTGACTTCGTAAATCTCAAGAT 59.023 37.037 0.00 0.00 36.07 2.40
80 81 7.039923 ACCTAAGTGACTTCGTAAATCTCAAGA 60.040 37.037 0.00 0.00 0.00 3.02
81 82 7.091443 ACCTAAGTGACTTCGTAAATCTCAAG 58.909 38.462 0.00 0.00 0.00 3.02
82 83 6.989659 ACCTAAGTGACTTCGTAAATCTCAA 58.010 36.000 0.00 0.00 0.00 3.02
83 84 6.585695 ACCTAAGTGACTTCGTAAATCTCA 57.414 37.500 0.00 0.00 0.00 3.27
97 98 4.088211 CGATGACGAGGCACCTAAGTGA 62.088 54.545 0.00 0.00 43.69 3.41
98 99 1.799181 CGATGACGAGGCACCTAAGTG 60.799 57.143 2.44 0.00 43.76 3.16
99 100 0.456221 CGATGACGAGGCACCTAAGT 59.544 55.000 0.00 0.00 42.66 2.24
100 101 0.738975 TCGATGACGAGGCACCTAAG 59.261 55.000 0.00 0.00 43.81 2.18
101 102 2.876581 TCGATGACGAGGCACCTAA 58.123 52.632 0.00 0.00 43.81 2.69
102 103 4.649845 TCGATGACGAGGCACCTA 57.350 55.556 0.00 0.00 43.81 3.08
112 113 0.460311 ATCAGGGTTCCGTCGATGAC 59.540 55.000 6.11 0.00 0.00 3.06
113 114 0.459899 CATCAGGGTTCCGTCGATGA 59.540 55.000 6.11 0.00 34.11 2.92
114 115 0.530650 CCATCAGGGTTCCGTCGATG 60.531 60.000 0.00 0.00 32.96 3.84
115 116 0.686441 TCCATCAGGGTTCCGTCGAT 60.686 55.000 0.00 0.00 38.11 3.59
116 117 1.304630 TCCATCAGGGTTCCGTCGA 60.305 57.895 0.00 0.00 38.11 4.20
117 118 1.153628 GTCCATCAGGGTTCCGTCG 60.154 63.158 0.00 0.00 38.11 5.12
118 119 0.108138 CAGTCCATCAGGGTTCCGTC 60.108 60.000 0.00 0.00 38.11 4.79
119 120 0.544357 TCAGTCCATCAGGGTTCCGT 60.544 55.000 0.00 0.00 38.11 4.69
120 121 0.613260 TTCAGTCCATCAGGGTTCCG 59.387 55.000 0.00 0.00 38.11 4.30
121 122 2.879103 TTTCAGTCCATCAGGGTTCC 57.121 50.000 0.00 0.00 38.11 3.62
122 123 4.640647 GGTATTTTCAGTCCATCAGGGTTC 59.359 45.833 0.00 0.00 38.11 3.62
123 124 4.044065 TGGTATTTTCAGTCCATCAGGGTT 59.956 41.667 0.00 0.00 38.11 4.11
124 125 3.591527 TGGTATTTTCAGTCCATCAGGGT 59.408 43.478 0.00 0.00 38.11 4.34
125 126 3.947834 GTGGTATTTTCAGTCCATCAGGG 59.052 47.826 0.00 0.00 34.83 4.45
126 127 4.637534 CAGTGGTATTTTCAGTCCATCAGG 59.362 45.833 0.00 0.00 32.45 3.86
127 128 5.248640 ACAGTGGTATTTTCAGTCCATCAG 58.751 41.667 0.00 0.00 32.45 2.90
128 129 5.241403 ACAGTGGTATTTTCAGTCCATCA 57.759 39.130 0.00 0.00 32.45 3.07
129 130 5.123979 GGAACAGTGGTATTTTCAGTCCATC 59.876 44.000 0.00 0.00 32.45 3.51
130 131 5.010282 GGAACAGTGGTATTTTCAGTCCAT 58.990 41.667 0.00 0.00 32.45 3.41
131 132 4.104102 AGGAACAGTGGTATTTTCAGTCCA 59.896 41.667 0.00 0.00 0.00 4.02
132 133 4.652822 AGGAACAGTGGTATTTTCAGTCC 58.347 43.478 0.00 0.00 0.00 3.85
133 134 5.552178 AGAGGAACAGTGGTATTTTCAGTC 58.448 41.667 0.00 0.00 0.00 3.51
134 135 5.568620 AGAGGAACAGTGGTATTTTCAGT 57.431 39.130 0.00 0.00 0.00 3.41
135 136 5.582665 GCTAGAGGAACAGTGGTATTTTCAG 59.417 44.000 0.00 0.00 0.00 3.02
136 137 5.488341 GCTAGAGGAACAGTGGTATTTTCA 58.512 41.667 0.00 0.00 0.00 2.69
137 138 4.876679 GGCTAGAGGAACAGTGGTATTTTC 59.123 45.833 0.00 0.00 0.00 2.29
138 139 4.288626 TGGCTAGAGGAACAGTGGTATTTT 59.711 41.667 0.00 0.00 0.00 1.82
139 140 3.844211 TGGCTAGAGGAACAGTGGTATTT 59.156 43.478 0.00 0.00 0.00 1.40
140 141 3.450904 TGGCTAGAGGAACAGTGGTATT 58.549 45.455 0.00 0.00 0.00 1.89
141 142 3.116096 TGGCTAGAGGAACAGTGGTAT 57.884 47.619 0.00 0.00 0.00 2.73
142 143 2.615986 TGGCTAGAGGAACAGTGGTA 57.384 50.000 0.00 0.00 0.00 3.25
143 144 1.834263 GATGGCTAGAGGAACAGTGGT 59.166 52.381 0.00 0.00 0.00 4.16
144 145 1.139853 GGATGGCTAGAGGAACAGTGG 59.860 57.143 0.00 0.00 0.00 4.00
145 146 1.833630 TGGATGGCTAGAGGAACAGTG 59.166 52.381 0.00 0.00 0.00 3.66
146 147 2.114616 CTGGATGGCTAGAGGAACAGT 58.885 52.381 0.00 0.00 0.00 3.55
147 148 2.102252 GTCTGGATGGCTAGAGGAACAG 59.898 54.545 0.00 0.00 31.77 3.16
148 149 2.111384 GTCTGGATGGCTAGAGGAACA 58.889 52.381 0.00 0.00 31.77 3.18
149 150 2.111384 TGTCTGGATGGCTAGAGGAAC 58.889 52.381 0.00 0.00 31.77 3.62
150 151 2.111384 GTGTCTGGATGGCTAGAGGAA 58.889 52.381 0.00 0.00 31.77 3.36
151 152 1.007118 TGTGTCTGGATGGCTAGAGGA 59.993 52.381 0.00 0.00 31.77 3.71
152 153 1.489481 TGTGTCTGGATGGCTAGAGG 58.511 55.000 0.00 0.00 31.77 3.69
153 154 2.499289 ACTTGTGTCTGGATGGCTAGAG 59.501 50.000 0.00 0.00 31.77 2.43
154 155 2.540383 ACTTGTGTCTGGATGGCTAGA 58.460 47.619 0.00 0.00 0.00 2.43
155 156 3.005554 CAACTTGTGTCTGGATGGCTAG 58.994 50.000 0.00 0.00 0.00 3.42
156 157 2.290260 CCAACTTGTGTCTGGATGGCTA 60.290 50.000 0.00 0.00 31.38 3.93
157 158 1.546323 CCAACTTGTGTCTGGATGGCT 60.546 52.381 0.00 0.00 31.38 4.75
158 159 0.883833 CCAACTTGTGTCTGGATGGC 59.116 55.000 0.00 0.00 31.38 4.40
159 160 2.276732 ACCAACTTGTGTCTGGATGG 57.723 50.000 0.00 0.00 34.16 3.51
160 161 2.224079 CGAACCAACTTGTGTCTGGATG 59.776 50.000 0.00 0.00 34.16 3.51
161 162 2.494059 CGAACCAACTTGTGTCTGGAT 58.506 47.619 0.00 0.00 34.16 3.41
162 163 1.948104 CGAACCAACTTGTGTCTGGA 58.052 50.000 0.00 0.00 34.16 3.86
163 164 0.307760 GCGAACCAACTTGTGTCTGG 59.692 55.000 0.00 0.00 36.24 3.86
164 165 1.013596 TGCGAACCAACTTGTGTCTG 58.986 50.000 0.00 0.00 0.00 3.51
165 166 1.873591 GATGCGAACCAACTTGTGTCT 59.126 47.619 0.00 0.00 0.00 3.41
166 167 1.873591 AGATGCGAACCAACTTGTGTC 59.126 47.619 0.00 0.00 0.00 3.67
167 168 1.873591 GAGATGCGAACCAACTTGTGT 59.126 47.619 0.00 0.00 0.00 3.72
168 169 1.872952 TGAGATGCGAACCAACTTGTG 59.127 47.619 0.00 0.00 0.00 3.33
169 170 2.254546 TGAGATGCGAACCAACTTGT 57.745 45.000 0.00 0.00 0.00 3.16
170 171 3.558505 CTTTGAGATGCGAACCAACTTG 58.441 45.455 0.00 0.00 0.00 3.16
171 172 2.030805 GCTTTGAGATGCGAACCAACTT 60.031 45.455 0.00 0.00 0.00 2.66
172 173 1.537202 GCTTTGAGATGCGAACCAACT 59.463 47.619 0.00 0.00 0.00 3.16
173 174 1.266718 TGCTTTGAGATGCGAACCAAC 59.733 47.619 0.00 0.00 0.00 3.77
174 175 1.603456 TGCTTTGAGATGCGAACCAA 58.397 45.000 0.00 0.00 0.00 3.67
175 176 1.266718 GTTGCTTTGAGATGCGAACCA 59.733 47.619 0.00 0.00 0.00 3.67
176 177 1.537202 AGTTGCTTTGAGATGCGAACC 59.463 47.619 0.00 0.00 0.00 3.62
177 178 2.975851 CAAGTTGCTTTGAGATGCGAAC 59.024 45.455 0.00 0.00 0.00 3.95
178 179 2.030893 CCAAGTTGCTTTGAGATGCGAA 60.031 45.455 0.00 0.00 0.00 4.70
179 180 1.536766 CCAAGTTGCTTTGAGATGCGA 59.463 47.619 0.00 0.00 0.00 5.10
180 181 1.536766 TCCAAGTTGCTTTGAGATGCG 59.463 47.619 0.00 0.00 0.00 4.73
181 182 2.666619 CGTCCAAGTTGCTTTGAGATGC 60.667 50.000 0.00 0.00 0.00 3.91
182 183 2.666619 GCGTCCAAGTTGCTTTGAGATG 60.667 50.000 0.00 0.00 0.00 2.90
183 184 1.537202 GCGTCCAAGTTGCTTTGAGAT 59.463 47.619 0.00 0.00 0.00 2.75
184 185 0.944386 GCGTCCAAGTTGCTTTGAGA 59.056 50.000 0.00 0.00 0.00 3.27
185 186 0.947244 AGCGTCCAAGTTGCTTTGAG 59.053 50.000 0.00 0.00 34.80 3.02
186 187 1.388547 AAGCGTCCAAGTTGCTTTGA 58.611 45.000 0.00 0.00 46.12 2.69
187 188 3.944871 AAGCGTCCAAGTTGCTTTG 57.055 47.368 0.00 0.00 46.12 2.77
190 191 1.455383 CCCAAAGCGTCCAAGTTGCT 61.455 55.000 0.00 0.00 41.60 3.91
191 192 1.007387 CCCAAAGCGTCCAAGTTGC 60.007 57.895 0.00 0.00 0.00 4.17
192 193 0.744281 AACCCAAAGCGTCCAAGTTG 59.256 50.000 0.00 0.00 0.00 3.16
193 194 0.744281 CAACCCAAAGCGTCCAAGTT 59.256 50.000 0.00 0.00 0.00 2.66
194 195 0.395173 ACAACCCAAAGCGTCCAAGT 60.395 50.000 0.00 0.00 0.00 3.16
195 196 0.744281 AACAACCCAAAGCGTCCAAG 59.256 50.000 0.00 0.00 0.00 3.61
196 197 0.457851 CAACAACCCAAAGCGTCCAA 59.542 50.000 0.00 0.00 0.00 3.53
197 198 0.681564 ACAACAACCCAAAGCGTCCA 60.682 50.000 0.00 0.00 0.00 4.02
198 199 0.030235 GACAACAACCCAAAGCGTCC 59.970 55.000 0.00 0.00 0.00 4.79
199 200 0.316689 CGACAACAACCCAAAGCGTC 60.317 55.000 0.00 0.00 0.00 5.19
200 201 1.027792 ACGACAACAACCCAAAGCGT 61.028 50.000 0.00 0.00 0.00 5.07
201 202 0.316689 GACGACAACAACCCAAAGCG 60.317 55.000 0.00 0.00 0.00 4.68
202 203 0.736053 TGACGACAACAACCCAAAGC 59.264 50.000 0.00 0.00 0.00 3.51
217 218 1.421410 GCACCATAGAGGCGTTGACG 61.421 60.000 0.00 0.00 43.14 4.35
234 235 0.108186 GATCGTGGTCATCACCTGCA 60.108 55.000 0.00 0.00 44.17 4.41
237 238 3.634397 AAATGATCGTGGTCATCACCT 57.366 42.857 0.00 0.00 44.17 4.00
249 250 4.957759 AAGTAACCCGGAAAAATGATCG 57.042 40.909 0.73 0.00 0.00 3.69
255 256 3.502979 CCGATCAAAGTAACCCGGAAAAA 59.497 43.478 0.73 0.00 39.31 1.94
256 257 3.075884 CCGATCAAAGTAACCCGGAAAA 58.924 45.455 0.73 0.00 39.31 2.29
274 275 0.322648 TGTAGTCTCAGACCGACCGA 59.677 55.000 0.00 0.00 32.18 4.69
275 276 1.130749 CTTGTAGTCTCAGACCGACCG 59.869 57.143 0.00 0.00 32.18 4.79
276 277 2.095161 CACTTGTAGTCTCAGACCGACC 60.095 54.545 0.00 0.00 32.18 4.79
277 278 2.095161 CCACTTGTAGTCTCAGACCGAC 60.095 54.545 0.00 0.48 32.18 4.79
278 279 2.160205 CCACTTGTAGTCTCAGACCGA 58.840 52.381 0.00 0.00 32.18 4.69
279 280 1.202582 CCCACTTGTAGTCTCAGACCG 59.797 57.143 0.00 0.00 32.18 4.79
280 281 1.066787 GCCCACTTGTAGTCTCAGACC 60.067 57.143 0.00 0.00 32.18 3.85
281 282 1.896465 AGCCCACTTGTAGTCTCAGAC 59.104 52.381 0.00 0.00 0.00 3.51
282 283 1.895798 CAGCCCACTTGTAGTCTCAGA 59.104 52.381 0.00 0.00 0.00 3.27
283 284 1.066573 CCAGCCCACTTGTAGTCTCAG 60.067 57.143 0.00 0.00 0.00 3.35
284 285 0.976641 CCAGCCCACTTGTAGTCTCA 59.023 55.000 0.00 0.00 0.00 3.27
286 287 0.687354 CACCAGCCCACTTGTAGTCT 59.313 55.000 0.00 0.00 0.00 3.24
287 288 0.321653 CCACCAGCCCACTTGTAGTC 60.322 60.000 0.00 0.00 0.00 2.59
288 289 1.761174 CCACCAGCCCACTTGTAGT 59.239 57.895 0.00 0.00 0.00 2.73
289 290 1.675641 GCCACCAGCCCACTTGTAG 60.676 63.158 0.00 0.00 34.35 2.74
290 291 2.124507 GAGCCACCAGCCCACTTGTA 62.125 60.000 0.00 0.00 45.47 2.41
291 292 3.497884 GAGCCACCAGCCCACTTGT 62.498 63.158 0.00 0.00 45.47 3.16
303 304 1.686052 TGGTGACAATTTTGGAGCCAC 59.314 47.619 0.00 0.00 37.44 5.01
352 353 4.096190 CATAGATGATGGGAAACAGCCT 57.904 45.455 0.00 0.00 33.62 4.58
381 382 1.909532 GTACGCACGTCACATGTACTC 59.090 52.381 0.00 0.00 34.15 2.59
382 383 1.538512 AGTACGCACGTCACATGTACT 59.461 47.619 0.00 8.28 40.50 2.73
383 384 1.973138 AGTACGCACGTCACATGTAC 58.027 50.000 0.00 0.00 36.52 2.90
384 385 2.710220 AAGTACGCACGTCACATGTA 57.290 45.000 0.00 0.00 0.00 2.29
393 400 7.482743 TCTTGTAGTAGAAAATAAGTACGCACG 59.517 37.037 0.00 0.00 0.00 5.34
394 401 8.582096 GTCTTGTAGTAGAAAATAAGTACGCAC 58.418 37.037 0.00 0.00 0.00 5.34
398 405 9.635520 TGCTGTCTTGTAGTAGAAAATAAGTAC 57.364 33.333 0.00 0.00 0.00 2.73
402 409 7.386851 AGCTGCTGTCTTGTAGTAGAAAATAA 58.613 34.615 0.00 0.00 30.56 1.40
415 422 4.633126 TGCTATTTCTAAGCTGCTGTCTTG 59.367 41.667 1.35 0.00 40.73 3.02
417 424 4.187694 GTGCTATTTCTAAGCTGCTGTCT 58.812 43.478 1.35 0.00 40.73 3.41
419 426 3.942829 TGTGCTATTTCTAAGCTGCTGT 58.057 40.909 1.35 0.00 40.73 4.40
420 427 4.261072 CCATGTGCTATTTCTAAGCTGCTG 60.261 45.833 1.35 0.00 40.73 4.41
421 428 3.881688 CCATGTGCTATTTCTAAGCTGCT 59.118 43.478 0.00 0.00 40.73 4.24
475 485 9.411801 CGATTTAGATTAGCTGCTACTTTGATA 57.588 33.333 9.27 0.00 0.00 2.15
486 496 5.950965 ACGTTGACGATTTAGATTAGCTG 57.049 39.130 10.87 0.00 43.02 4.24
496 506 9.362539 ACTTGAAGTAATATACGTTGACGATTT 57.637 29.630 10.87 1.34 43.02 2.17
497 507 8.922058 ACTTGAAGTAATATACGTTGACGATT 57.078 30.769 10.87 2.71 43.02 3.34
512 522 9.871175 AAACCCTAAATCCTAAACTTGAAGTAA 57.129 29.630 0.00 0.00 0.00 2.24
514 524 9.516546 CTAAACCCTAAATCCTAAACTTGAAGT 57.483 33.333 0.00 0.00 0.00 3.01
515 525 9.734984 TCTAAACCCTAAATCCTAAACTTGAAG 57.265 33.333 0.00 0.00 0.00 3.02
575 585 9.427821 AAGAGGAGTAGTGTATGAGAATAACAT 57.572 33.333 0.00 0.00 0.00 2.71
576 586 8.824756 AAGAGGAGTAGTGTATGAGAATAACA 57.175 34.615 0.00 0.00 0.00 2.41
577 587 9.522804 CAAAGAGGAGTAGTGTATGAGAATAAC 57.477 37.037 0.00 0.00 0.00 1.89
578 588 9.256228 ACAAAGAGGAGTAGTGTATGAGAATAA 57.744 33.333 0.00 0.00 0.00 1.40
579 589 8.824756 ACAAAGAGGAGTAGTGTATGAGAATA 57.175 34.615 0.00 0.00 0.00 1.75
580 590 7.726033 ACAAAGAGGAGTAGTGTATGAGAAT 57.274 36.000 0.00 0.00 0.00 2.40
581 591 8.824756 ATACAAAGAGGAGTAGTGTATGAGAA 57.175 34.615 0.00 0.00 34.83 2.87
582 592 8.053355 TGATACAAAGAGGAGTAGTGTATGAGA 58.947 37.037 0.00 0.00 35.94 3.27
583 593 8.226819 TGATACAAAGAGGAGTAGTGTATGAG 57.773 38.462 0.00 0.00 35.94 2.90
584 594 8.633561 CATGATACAAAGAGGAGTAGTGTATGA 58.366 37.037 0.00 0.00 35.94 2.15
585 595 7.383572 GCATGATACAAAGAGGAGTAGTGTATG 59.616 40.741 0.00 0.00 35.94 2.39
586 596 7.437748 GCATGATACAAAGAGGAGTAGTGTAT 58.562 38.462 0.00 0.00 37.94 2.29
587 597 6.183360 GGCATGATACAAAGAGGAGTAGTGTA 60.183 42.308 0.00 0.00 0.00 2.90
588 598 5.395768 GGCATGATACAAAGAGGAGTAGTGT 60.396 44.000 0.00 0.00 0.00 3.55
589 599 5.053145 GGCATGATACAAAGAGGAGTAGTG 58.947 45.833 0.00 0.00 0.00 2.74
590 600 4.202161 CGGCATGATACAAAGAGGAGTAGT 60.202 45.833 0.00 0.00 0.00 2.73
591 601 4.302455 CGGCATGATACAAAGAGGAGTAG 58.698 47.826 0.00 0.00 0.00 2.57
592 602 3.492656 GCGGCATGATACAAAGAGGAGTA 60.493 47.826 0.00 0.00 0.00 2.59
593 603 2.743183 GCGGCATGATACAAAGAGGAGT 60.743 50.000 0.00 0.00 0.00 3.85
594 604 1.869767 GCGGCATGATACAAAGAGGAG 59.130 52.381 0.00 0.00 0.00 3.69
595 605 1.475034 GGCGGCATGATACAAAGAGGA 60.475 52.381 3.07 0.00 0.00 3.71
596 606 0.947244 GGCGGCATGATACAAAGAGG 59.053 55.000 3.07 0.00 0.00 3.69
597 607 1.959042 AGGCGGCATGATACAAAGAG 58.041 50.000 13.08 0.00 0.00 2.85
598 608 2.418368 AAGGCGGCATGATACAAAGA 57.582 45.000 13.08 0.00 0.00 2.52
599 609 3.508744 AAAAGGCGGCATGATACAAAG 57.491 42.857 13.08 0.00 0.00 2.77
600 610 3.951775 AAAAAGGCGGCATGATACAAA 57.048 38.095 13.08 0.00 0.00 2.83
623 633 9.647797 TCTAGAATGAATTTGCGTACTCTAAAA 57.352 29.630 0.00 0.00 0.00 1.52
624 634 9.647797 TTCTAGAATGAATTTGCGTACTCTAAA 57.352 29.630 0.00 0.00 0.00 1.85
625 635 9.817809 ATTCTAGAATGAATTTGCGTACTCTAA 57.182 29.630 17.26 0.00 33.33 2.10
627 637 9.250624 GTATTCTAGAATGAATTTGCGTACTCT 57.749 33.333 25.22 0.00 37.73 3.24
628 638 9.250624 AGTATTCTAGAATGAATTTGCGTACTC 57.749 33.333 25.22 0.00 37.73 2.59
632 642 9.035607 CAGTAGTATTCTAGAATGAATTTGCGT 57.964 33.333 25.22 1.02 37.73 5.24
633 643 9.035607 ACAGTAGTATTCTAGAATGAATTTGCG 57.964 33.333 25.22 10.81 37.73 4.85
647 657 7.066766 CGGAGTGGTAGTAAACAGTAGTATTCT 59.933 40.741 0.00 0.00 0.00 2.40
649 659 6.660949 ACGGAGTGGTAGTAAACAGTAGTATT 59.339 38.462 0.00 0.00 42.51 1.89
651 661 5.560724 ACGGAGTGGTAGTAAACAGTAGTA 58.439 41.667 0.00 0.00 42.51 1.82
678 688 2.778278 TGGCCTCCCCCATGATCC 60.778 66.667 3.32 0.00 0.00 3.36
679 689 2.517919 GTGGCCTCCCCCATGATC 59.482 66.667 3.32 0.00 37.20 2.92
680 690 3.105928 GGTGGCCTCCCCCATGAT 61.106 66.667 13.20 0.00 37.20 2.45
727 737 1.476891 CAGCCACACCAGTACGATACT 59.523 52.381 0.00 0.00 40.28 2.12
728 738 1.922570 CAGCCACACCAGTACGATAC 58.077 55.000 0.00 0.00 0.00 2.24
733 745 0.036010 ATCTGCAGCCACACCAGTAC 60.036 55.000 9.47 0.00 0.00 2.73
768 780 1.470979 GCCACACACGATCCGACTAAT 60.471 52.381 0.00 0.00 0.00 1.73
769 781 0.108992 GCCACACACGATCCGACTAA 60.109 55.000 0.00 0.00 0.00 2.24
779 791 4.969196 AGCTCCACGCCACACACG 62.969 66.667 0.00 0.00 40.39 4.49
783 795 2.745281 GTTAAATAAGCTCCACGCCACA 59.255 45.455 0.00 0.00 40.39 4.17
794 806 4.079710 GCAGTGTCGAACGTTAAATAAGC 58.920 43.478 0.00 0.00 0.00 3.09
816 828 8.231837 TCGGAGTATTTTGTTTCTTATTTTCCG 58.768 33.333 0.00 0.00 41.78 4.30
841 853 0.461693 GGTGGTGCTCTGCTCAGATC 60.462 60.000 0.00 0.00 36.76 2.75
843 855 2.587247 GGGTGGTGCTCTGCTCAGA 61.587 63.158 0.00 0.00 35.85 3.27
861 899 1.734465 GAAGTCAAGAACCGGCAGATG 59.266 52.381 0.00 0.00 0.00 2.90
921 959 3.482232 CTGTCCATGGCGGGGATCC 62.482 68.421 6.96 1.92 36.67 3.36
1384 1428 3.279434 GGAAGTATGGAACCAAAGCGAT 58.721 45.455 0.00 0.00 0.00 4.58
1451 1513 2.094675 CATGGAACCTGGTGAACCATC 58.905 52.381 22.04 7.68 46.46 3.51
1472 1534 1.971167 GGTCGGTTGAAGCATGGCA 60.971 57.895 0.00 0.00 0.00 4.92
1475 1537 2.034879 AGCGGTCGGTTGAAGCATG 61.035 57.895 0.00 0.00 33.84 4.06
1718 1789 4.329545 AGTGGCACGACCGGCATT 62.330 61.111 12.71 0.00 44.06 3.56
2000 2074 3.050275 GCGCGCTCTTGGAAACCT 61.050 61.111 26.67 0.00 0.00 3.50
2024 2098 4.660938 GTGGTCACCAGCCCCACC 62.661 72.222 0.00 0.00 42.27 4.61
2049 2123 2.372504 CCAGGATGCTCATCTGAGGAAT 59.627 50.000 5.47 0.00 45.49 3.01
2194 2268 1.432270 CGCCTTCTTCGCCTCCATTC 61.432 60.000 0.00 0.00 0.00 2.67
2311 2385 1.375908 GCACCTGCCACGAATCTCA 60.376 57.895 0.00 0.00 34.31 3.27
2342 2416 3.589951 TGGGTATTAGCTACGACCTCT 57.410 47.619 18.45 0.00 32.24 3.69
2360 2434 1.254026 TGTACCTCTCCTGTCGTTGG 58.746 55.000 0.00 0.00 0.00 3.77
2361 2435 3.056821 TCAATGTACCTCTCCTGTCGTTG 60.057 47.826 0.00 0.00 0.00 4.10
2366 2440 2.803956 TCGTCAATGTACCTCTCCTGT 58.196 47.619 0.00 0.00 0.00 4.00
2395 2469 0.802607 GCCGTGAGATCGAAGGTGTC 60.803 60.000 0.00 0.00 0.00 3.67
2416 2490 2.182496 CCATCAGTTGCAATGGCGA 58.818 52.632 0.59 0.00 45.35 5.54
2438 2516 2.202892 GTAGCGGCAGTAGTGGCC 60.203 66.667 17.73 10.78 46.64 5.36
2447 2525 0.249531 TTGTTCACGAAGTAGCGGCA 60.250 50.000 1.45 0.00 41.61 5.69
2469 2547 7.707774 AAGTATCAAACACAAAATTTTCCCG 57.292 32.000 0.00 0.00 0.00 5.14
2573 2861 8.677148 AAATATACGCTTGACCATTTCTACAT 57.323 30.769 0.00 0.00 0.00 2.29
2604 2892 2.903784 TGTGTAGCACCACCTTAGTGAT 59.096 45.455 3.66 0.00 44.22 3.06
2610 2898 3.263170 TCACATATGTGTAGCACCACCTT 59.737 43.478 30.03 0.00 45.76 3.50
2692 4465 7.898100 TGAGAGGCCTCTATATGATCAAACTAT 59.102 37.037 35.26 7.11 40.61 2.12
2693 4466 7.177568 GTGAGAGGCCTCTATATGATCAAACTA 59.822 40.741 35.26 6.51 40.61 2.24
2729 4502 5.880332 AGGCGAGCAATAATTTCTTGAACTA 59.120 36.000 0.00 0.00 0.00 2.24
2735 4508 4.580580 CCCTTAGGCGAGCAATAATTTCTT 59.419 41.667 0.00 0.00 0.00 2.52
2753 4526 6.636454 ATCACAAAAGGATAGTGACCCTTA 57.364 37.500 0.00 0.00 44.15 2.69
2779 4552 2.100605 ACGAGAAATGCCCTCAAGAC 57.899 50.000 0.00 0.00 0.00 3.01
2781 4554 5.567138 AATTTACGAGAAATGCCCTCAAG 57.433 39.130 0.00 0.00 0.00 3.02
2794 4592 5.226978 CACACACACACACAAAATTTACGAG 59.773 40.000 0.00 0.00 0.00 4.18
2795 4593 5.089411 CACACACACACACAAAATTTACGA 58.911 37.500 0.00 0.00 0.00 3.43
2796 4594 4.854291 ACACACACACACACAAAATTTACG 59.146 37.500 0.00 0.00 0.00 3.18
2797 4595 5.631512 ACACACACACACACACAAAATTTAC 59.368 36.000 0.00 0.00 0.00 2.01
2798 4596 5.631096 CACACACACACACACACAAAATTTA 59.369 36.000 0.00 0.00 0.00 1.40
2799 4597 4.447054 CACACACACACACACACAAAATTT 59.553 37.500 0.00 0.00 0.00 1.82
2800 4598 3.986572 CACACACACACACACACAAAATT 59.013 39.130 0.00 0.00 0.00 1.82
2801 4599 3.005261 ACACACACACACACACACAAAAT 59.995 39.130 0.00 0.00 0.00 1.82
2802 4600 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
2803 4601 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2804 4602 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2805 4603 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2806 4604 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2807 4605 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2808 4606 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
2809 4607 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2810 4608 1.653094 CCCCACACACACACACACAC 61.653 60.000 0.00 0.00 0.00 3.82
2811 4609 1.377856 CCCCACACACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
2812 4610 2.118404 CCCCCACACACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
2813 4611 2.273776 CCCCCACACACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
3134 4932 2.695147 ACTTCTTTGACAAAGGGCAAGG 59.305 45.455 24.22 10.53 39.01 3.61
3135 4933 4.022849 CCTACTTCTTTGACAAAGGGCAAG 60.023 45.833 24.22 21.29 39.01 4.01
3136 4934 3.888930 CCTACTTCTTTGACAAAGGGCAA 59.111 43.478 24.22 12.64 39.01 4.52
3137 4935 3.137544 TCCTACTTCTTTGACAAAGGGCA 59.862 43.478 24.22 10.53 39.01 5.36
3138 4936 3.751518 TCCTACTTCTTTGACAAAGGGC 58.248 45.455 24.22 0.00 39.01 5.19
3139 4937 4.974399 ACTCCTACTTCTTTGACAAAGGG 58.026 43.478 24.22 17.59 39.01 3.95
3140 4938 6.055588 TCAACTCCTACTTCTTTGACAAAGG 58.944 40.000 24.22 13.67 39.01 3.11
3141 4939 7.410485 GTTCAACTCCTACTTCTTTGACAAAG 58.590 38.462 19.93 19.93 39.88 2.77
3142 4940 6.317893 GGTTCAACTCCTACTTCTTTGACAAA 59.682 38.462 0.00 0.00 0.00 2.83
3161 4967 3.555377 CCAAGCAAGCATGAATGGTTCAA 60.555 43.478 11.27 0.00 45.69 2.69
3181 4987 2.046892 GCCTCTCTTTGCTCGCCA 60.047 61.111 0.00 0.00 0.00 5.69
3184 4990 1.373497 ACGTGCCTCTCTTTGCTCG 60.373 57.895 4.66 4.66 46.43 5.03
3200 5006 1.450312 GCCCATCACCTTCCTCACG 60.450 63.158 0.00 0.00 0.00 4.35
3202 5008 1.075601 AAAGCCCATCACCTTCCTCA 58.924 50.000 0.00 0.00 0.00 3.86
3206 5012 2.489722 GACTTCAAAGCCCATCACCTTC 59.510 50.000 0.00 0.00 0.00 3.46
3209 5015 1.909700 TGACTTCAAAGCCCATCACC 58.090 50.000 0.00 0.00 0.00 4.02
3215 5021 4.550422 GAAACAAGATGACTTCAAAGCCC 58.450 43.478 0.00 0.00 33.70 5.19
3223 5029 3.771216 AGCATGGGAAACAAGATGACTT 58.229 40.909 0.00 0.00 36.73 3.01
3230 5036 5.504501 GCAAAAGAAAAGCATGGGAAACAAG 60.505 40.000 0.00 0.00 0.00 3.16
3248 5054 3.251004 ACAGACGCCTAAAGAAGCAAAAG 59.749 43.478 0.00 0.00 0.00 2.27
3249 5055 3.211045 ACAGACGCCTAAAGAAGCAAAA 58.789 40.909 0.00 0.00 0.00 2.44
3261 5068 5.938125 ACTCATAACAAATTAACAGACGCCT 59.062 36.000 0.00 0.00 0.00 5.52
3287 5094 1.599518 CCTAGCCGCCACAACACAA 60.600 57.895 0.00 0.00 0.00 3.33
3289 5096 2.032071 ACCTAGCCGCCACAACAC 59.968 61.111 0.00 0.00 0.00 3.32
3322 5129 5.666462 GGACTTTTGGCTTCCACTTAAAAA 58.334 37.500 0.00 0.00 30.78 1.94
3323 5130 4.202070 CGGACTTTTGGCTTCCACTTAAAA 60.202 41.667 0.00 0.00 30.78 1.52
3324 5131 3.316868 CGGACTTTTGGCTTCCACTTAAA 59.683 43.478 0.00 0.00 30.78 1.52
3325 5132 2.882137 CGGACTTTTGGCTTCCACTTAA 59.118 45.455 0.00 0.00 30.78 1.85
3333 5140 0.744281 CCACAACGGACTTTTGGCTT 59.256 50.000 0.00 0.00 36.56 4.35
3338 5145 1.021968 GAGTGCCACAACGGACTTTT 58.978 50.000 0.00 0.00 36.56 2.27
3339 5146 0.180406 AGAGTGCCACAACGGACTTT 59.820 50.000 0.00 0.00 36.56 2.66
3354 5170 0.610232 GCAATCCAAGTGGCCAGAGT 60.610 55.000 5.11 0.00 34.44 3.24
3402 5218 7.759489 AAACTTGTTGCTCATATAAAGTCCA 57.241 32.000 0.00 0.00 0.00 4.02
3406 5222 9.425893 CGTGATAAACTTGTTGCTCATATAAAG 57.574 33.333 0.00 0.00 0.00 1.85
3427 5243 8.458843 CCAAAAACTACTTTCAATATCCGTGAT 58.541 33.333 0.00 0.00 0.00 3.06
3431 5247 6.616947 TGCCAAAAACTACTTTCAATATCCG 58.383 36.000 0.00 0.00 0.00 4.18
3432 5248 9.087424 GATTGCCAAAAACTACTTTCAATATCC 57.913 33.333 0.00 0.00 0.00 2.59
3436 5252 7.066307 AGGATTGCCAAAAACTACTTTCAAT 57.934 32.000 0.00 0.00 36.29 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.