Multiple sequence alignment - TraesCS5A01G463800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G463800 chr5A 100.000 2589 0 0 1 2589 643653800 643651212 0.000000e+00 4782.0
1 TraesCS5A01G463800 chr5A 94.918 551 25 2 2042 2589 643630078 643629528 0.000000e+00 859.0
2 TraesCS5A01G463800 chr5A 94.161 548 29 3 2042 2589 132380907 132381451 0.000000e+00 832.0
3 TraesCS5A01G463800 chr5A 79.551 1247 175 42 845 2039 643735278 643734060 0.000000e+00 817.0
4 TraesCS5A01G463800 chr5A 81.773 1004 141 28 1056 2039 643855500 643854519 0.000000e+00 802.0
5 TraesCS5A01G463800 chr5A 86.775 431 53 2 1029 1456 643453876 643453447 6.480000e-131 477.0
6 TraesCS5A01G463800 chr5A 81.159 345 50 13 1700 2039 643577936 643577602 1.980000e-66 263.0
7 TraesCS5A01G463800 chr5A 75.093 269 41 12 392 638 402545385 402545649 4.560000e-18 102.0
8 TraesCS5A01G463800 chr5B 86.531 1225 117 30 845 2039 648181069 648179863 0.000000e+00 1304.0
9 TraesCS5A01G463800 chr5B 86.247 429 56 1 1029 1454 647994561 647994133 1.810000e-126 462.0
10 TraesCS5A01G463800 chr5B 78.175 504 79 21 1542 2039 648135553 648135075 2.520000e-75 292.0
11 TraesCS5A01G463800 chr5B 81.977 344 49 10 1700 2039 648130608 648130274 1.960000e-71 279.0
12 TraesCS5A01G463800 chr5B 79.381 388 63 15 1658 2039 648122959 648123335 9.190000e-65 257.0
13 TraesCS5A01G463800 chr5B 82.867 286 45 3 1755 2039 648000812 648000530 1.190000e-63 254.0
14 TraesCS5A01G463800 chr5D 85.158 1233 125 32 849 2039 515425196 515423980 0.000000e+00 1210.0
15 TraesCS5A01G463800 chr5D 79.251 1041 175 28 1015 2039 515466258 515465243 0.000000e+00 688.0
16 TraesCS5A01G463800 chr5D 76.226 265 41 14 1542 1802 515338600 515338354 1.260000e-23 121.0
17 TraesCS5A01G463800 chr2A 96.168 548 21 0 2042 2589 501877385 501877932 0.000000e+00 896.0
18 TraesCS5A01G463800 chr2A 94.891 548 28 0 2042 2589 603367842 603367295 0.000000e+00 857.0
19 TraesCS5A01G463800 chr2A 94.708 548 28 1 2042 2589 501903275 501903821 0.000000e+00 850.0
20 TraesCS5A01G463800 chr2A 94.353 549 29 2 2042 2589 603343713 603343166 0.000000e+00 841.0
21 TraesCS5A01G463800 chr2A 83.047 407 61 5 1055 1456 766593083 766593486 1.890000e-96 363.0
22 TraesCS5A01G463800 chr1A 95.264 549 24 2 2042 2589 305080369 305079822 0.000000e+00 869.0
23 TraesCS5A01G463800 chr1A 94.698 547 25 2 2042 2587 305048201 305047658 0.000000e+00 846.0
24 TraesCS5A01G463800 chr4A 94.161 548 28 3 2042 2589 157634937 157635480 0.000000e+00 832.0
25 TraesCS5A01G463800 chr4A 88.347 472 50 4 375 846 174115705 174115239 1.740000e-156 562.0
26 TraesCS5A01G463800 chr4A 82.209 326 49 8 4 323 174115954 174115632 3.280000e-69 272.0
27 TraesCS5A01G463800 chr3D 76.173 277 46 15 373 638 591038547 591038814 7.520000e-26 128.0
28 TraesCS5A01G463800 chr2D 86.667 75 7 3 396 468 608510750 608510823 2.140000e-11 80.5
29 TraesCS5A01G463800 chr6D 86.301 73 7 3 398 468 387880144 387880215 2.760000e-10 76.8
30 TraesCS5A01G463800 chr6D 86.301 73 7 3 398 468 446536878 446536807 2.760000e-10 76.8
31 TraesCS5A01G463800 chr3B 94.595 37 2 0 523 559 519476062 519476098 1.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G463800 chr5A 643651212 643653800 2588 True 4782 4782 100.000 1 2589 1 chr5A.!!$R4 2588
1 TraesCS5A01G463800 chr5A 643629528 643630078 550 True 859 859 94.918 2042 2589 1 chr5A.!!$R3 547
2 TraesCS5A01G463800 chr5A 132380907 132381451 544 False 832 832 94.161 2042 2589 1 chr5A.!!$F1 547
3 TraesCS5A01G463800 chr5A 643734060 643735278 1218 True 817 817 79.551 845 2039 1 chr5A.!!$R5 1194
4 TraesCS5A01G463800 chr5A 643854519 643855500 981 True 802 802 81.773 1056 2039 1 chr5A.!!$R6 983
5 TraesCS5A01G463800 chr5B 648179863 648181069 1206 True 1304 1304 86.531 845 2039 1 chr5B.!!$R5 1194
6 TraesCS5A01G463800 chr5D 515423980 515425196 1216 True 1210 1210 85.158 849 2039 1 chr5D.!!$R2 1190
7 TraesCS5A01G463800 chr5D 515465243 515466258 1015 True 688 688 79.251 1015 2039 1 chr5D.!!$R3 1024
8 TraesCS5A01G463800 chr2A 501877385 501877932 547 False 896 896 96.168 2042 2589 1 chr2A.!!$F1 547
9 TraesCS5A01G463800 chr2A 603367295 603367842 547 True 857 857 94.891 2042 2589 1 chr2A.!!$R2 547
10 TraesCS5A01G463800 chr2A 501903275 501903821 546 False 850 850 94.708 2042 2589 1 chr2A.!!$F2 547
11 TraesCS5A01G463800 chr2A 603343166 603343713 547 True 841 841 94.353 2042 2589 1 chr2A.!!$R1 547
12 TraesCS5A01G463800 chr1A 305079822 305080369 547 True 869 869 95.264 2042 2589 1 chr1A.!!$R2 547
13 TraesCS5A01G463800 chr1A 305047658 305048201 543 True 846 846 94.698 2042 2587 1 chr1A.!!$R1 545
14 TraesCS5A01G463800 chr4A 157634937 157635480 543 False 832 832 94.161 2042 2589 1 chr4A.!!$F1 547
15 TraesCS5A01G463800 chr4A 174115239 174115954 715 True 417 562 85.278 4 846 2 chr4A.!!$R1 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 826 0.028902 CGCACGATCAGTATCCGTCA 59.971 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1793 0.324183 TGCTGTCTCCTCCTCCTCAG 60.324 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.422303 GCGACGCTTCATGGTGCA 61.422 61.111 13.73 0.00 0.00 4.57
59 60 2.029288 CGACGCTTCATGGTGCAGT 61.029 57.895 10.49 8.88 0.00 4.40
75 76 0.647410 CAGTAAAGCGATGTCTGGCG 59.353 55.000 0.00 0.00 0.00 5.69
104 105 2.677944 TCGTGGTGTTGCCAACATGAC 61.678 52.381 14.22 11.90 46.78 3.06
109 110 0.534877 TGTTGCCAACATGACGAGCT 60.535 50.000 6.08 0.00 36.25 4.09
114 115 1.690283 CCAACATGACGAGCTCTGCG 61.690 60.000 12.85 1.35 0.00 5.18
125 126 4.007644 CTCTGCGGGTGGTGCTGA 62.008 66.667 0.00 0.00 37.87 4.26
136 137 2.328099 GGTGCTGAAGGGAAGTGCG 61.328 63.158 0.00 0.00 0.00 5.34
156 157 3.064324 GGGTTGCAATGGAGCGCT 61.064 61.111 11.27 11.27 37.31 5.92
157 158 2.180017 GGTTGCAATGGAGCGCTG 59.820 61.111 18.48 0.53 37.31 5.18
176 177 0.106819 GATGGAGGCTGCAATGGAGT 60.107 55.000 14.16 0.00 0.00 3.85
178 179 1.001641 GGAGGCTGCAATGGAGTGT 60.002 57.895 0.00 0.00 0.00 3.55
189 236 2.502080 GGAGTGTCGCGTGAGTCG 60.502 66.667 5.77 0.00 43.12 4.18
197 244 2.465920 GCGTGAGTCGTTGAAGCG 59.534 61.111 0.00 0.00 42.13 4.68
209 256 4.189188 GAAGCGACGCCGGAGCTA 62.189 66.667 17.79 0.00 40.78 3.32
219 266 1.766143 GCCGGAGCTACAATGAAGCG 61.766 60.000 5.05 0.00 44.87 4.68
220 267 1.638467 CGGAGCTACAATGAAGCGC 59.362 57.895 0.00 0.00 44.87 5.92
221 268 1.083806 CGGAGCTACAATGAAGCGCA 61.084 55.000 11.47 0.00 44.87 6.09
222 269 0.375106 GGAGCTACAATGAAGCGCAC 59.625 55.000 11.47 3.52 44.87 5.34
223 270 0.375106 GAGCTACAATGAAGCGCACC 59.625 55.000 11.47 0.05 44.87 5.01
224 271 1.060937 GCTACAATGAAGCGCACCG 59.939 57.895 11.47 0.00 0.00 4.94
225 272 1.715585 CTACAATGAAGCGCACCGG 59.284 57.895 11.47 0.00 0.00 5.28
226 273 0.739462 CTACAATGAAGCGCACCGGA 60.739 55.000 9.46 0.00 0.00 5.14
227 274 0.739462 TACAATGAAGCGCACCGGAG 60.739 55.000 9.46 0.00 0.00 4.63
228 275 3.127533 AATGAAGCGCACCGGAGC 61.128 61.111 14.54 14.54 40.48 4.70
235 282 3.777925 CGCACCGGAGCTTCGTTG 61.778 66.667 21.78 11.18 0.00 4.10
236 283 2.357034 GCACCGGAGCTTCGTTGA 60.357 61.111 17.13 0.00 0.00 3.18
237 284 1.959226 GCACCGGAGCTTCGTTGAA 60.959 57.895 17.13 0.00 0.00 2.69
238 285 1.901650 GCACCGGAGCTTCGTTGAAG 61.902 60.000 17.13 0.52 42.03 3.02
245 292 2.170985 CTTCGTTGAAGCACGCCG 59.829 61.111 0.00 0.00 40.14 6.46
246 293 3.295228 CTTCGTTGAAGCACGCCGG 62.295 63.158 0.00 0.00 40.14 6.13
247 294 4.595538 TCGTTGAAGCACGCCGGT 62.596 61.111 1.90 0.00 40.14 5.28
249 296 3.276846 GTTGAAGCACGCCGGTGT 61.277 61.111 16.69 16.69 46.13 4.16
250 297 2.515057 TTGAAGCACGCCGGTGTT 60.515 55.556 20.30 3.68 46.13 3.32
251 298 2.829206 TTGAAGCACGCCGGTGTTG 61.829 57.895 20.30 15.04 46.13 3.33
252 299 4.683334 GAAGCACGCCGGTGTTGC 62.683 66.667 25.45 25.45 46.13 4.17
255 302 4.341502 GCACGCCGGTGTTGCAAT 62.342 61.111 26.88 3.06 46.13 3.56
256 303 2.428902 CACGCCGGTGTTGCAATG 60.429 61.111 20.30 1.65 39.38 2.82
257 304 2.593148 ACGCCGGTGTTGCAATGA 60.593 55.556 16.69 0.00 0.00 2.57
258 305 2.190170 ACGCCGGTGTTGCAATGAA 61.190 52.632 16.69 0.00 0.00 2.57
259 306 1.442520 CGCCGGTGTTGCAATGAAG 60.443 57.895 6.91 0.00 0.00 3.02
260 307 1.734117 GCCGGTGTTGCAATGAAGC 60.734 57.895 0.59 0.46 0.00 3.86
261 308 1.659233 CCGGTGTTGCAATGAAGCA 59.341 52.632 0.59 0.00 43.99 3.91
262 309 0.664166 CCGGTGTTGCAATGAAGCAC 60.664 55.000 0.59 5.44 45.61 4.40
263 310 0.998226 CGGTGTTGCAATGAAGCACG 60.998 55.000 0.59 0.00 45.61 5.34
264 311 1.277495 GGTGTTGCAATGAAGCACGC 61.277 55.000 0.59 0.00 45.61 5.34
265 312 1.007502 TGTTGCAATGAAGCACGCC 60.008 52.632 0.59 0.00 45.61 5.68
266 313 2.082366 GTTGCAATGAAGCACGCCG 61.082 57.895 0.59 0.00 45.61 6.46
267 314 3.266230 TTGCAATGAAGCACGCCGG 62.266 57.895 0.00 0.00 45.61 6.13
268 315 3.430862 GCAATGAAGCACGCCGGA 61.431 61.111 5.05 0.00 0.00 5.14
269 316 2.787249 CAATGAAGCACGCCGGAG 59.213 61.111 5.05 3.72 0.00 4.63
270 317 3.127533 AATGAAGCACGCCGGAGC 61.128 61.111 5.05 5.59 0.00 4.70
271 318 3.899981 AATGAAGCACGCCGGAGCA 62.900 57.895 5.05 0.00 39.83 4.26
280 327 3.267860 GCCGGAGCAGCGATGAAG 61.268 66.667 5.05 0.00 39.53 3.02
281 328 3.267860 CCGGAGCAGCGATGAAGC 61.268 66.667 4.02 0.00 37.41 3.86
282 329 3.624300 CGGAGCAGCGATGAAGCG 61.624 66.667 4.02 0.00 43.00 4.68
283 330 2.510238 GGAGCAGCGATGAAGCGT 60.510 61.111 4.02 0.00 43.00 5.07
284 331 2.699809 GAGCAGCGATGAAGCGTG 59.300 61.111 4.02 0.00 43.00 5.34
285 332 3.431683 GAGCAGCGATGAAGCGTGC 62.432 63.158 4.02 7.21 43.00 5.34
286 333 4.527157 GCAGCGATGAAGCGTGCC 62.527 66.667 4.02 0.00 43.00 5.01
287 334 4.214383 CAGCGATGAAGCGTGCCG 62.214 66.667 0.00 0.00 43.00 5.69
290 337 3.257561 CGATGAAGCGTGCCGGAG 61.258 66.667 5.05 0.00 0.00 4.63
291 338 3.567797 GATGAAGCGTGCCGGAGC 61.568 66.667 5.05 7.36 40.48 4.70
292 339 4.087892 ATGAAGCGTGCCGGAGCT 62.088 61.111 5.05 10.05 46.97 4.09
296 343 4.087892 AGCGTGCCGGAGCTTCAT 62.088 61.111 5.05 0.00 41.52 2.57
297 344 3.127533 GCGTGCCGGAGCTTCATT 61.128 61.111 5.05 0.00 40.80 2.57
298 345 2.787249 CGTGCCGGAGCTTCATTG 59.213 61.111 5.05 0.00 40.80 2.82
299 346 1.741401 CGTGCCGGAGCTTCATTGA 60.741 57.895 5.05 0.00 40.80 2.57
300 347 1.298157 CGTGCCGGAGCTTCATTGAA 61.298 55.000 5.05 0.00 40.80 2.69
301 348 0.449388 GTGCCGGAGCTTCATTGAAG 59.551 55.000 19.92 19.92 42.03 3.02
308 355 4.751539 CTTCATTGAAGCACGCCG 57.248 55.556 13.20 0.00 32.78 6.46
309 356 1.135315 CTTCATTGAAGCACGCCGG 59.865 57.895 13.20 0.00 32.78 6.13
310 357 1.298157 CTTCATTGAAGCACGCCGGA 61.298 55.000 13.20 0.00 32.78 5.14
311 358 1.298157 TTCATTGAAGCACGCCGGAG 61.298 55.000 5.05 3.72 0.00 4.63
312 359 3.127533 ATTGAAGCACGCCGGAGC 61.128 61.111 5.05 5.59 0.00 4.70
313 360 3.612247 ATTGAAGCACGCCGGAGCT 62.612 57.895 5.05 8.39 42.15 4.09
322 369 3.267860 GCCGGAGCTGCGATGAAG 61.268 66.667 30.34 12.90 35.50 3.02
323 370 3.267860 CCGGAGCTGCGATGAAGC 61.268 66.667 30.34 0.00 41.15 3.86
324 371 3.624300 CGGAGCTGCGATGAAGCG 61.624 66.667 24.56 0.00 45.59 4.68
325 372 2.510238 GGAGCTGCGATGAAGCGT 60.510 61.111 0.00 0.00 45.59 5.07
326 373 2.699809 GAGCTGCGATGAAGCGTG 59.300 61.111 0.00 0.00 45.59 5.34
327 374 1.807165 GAGCTGCGATGAAGCGTGA 60.807 57.895 0.00 0.00 45.59 4.35
328 375 2.018582 GAGCTGCGATGAAGCGTGAC 62.019 60.000 0.00 0.00 45.59 3.67
329 376 2.691522 CTGCGATGAAGCGTGACG 59.308 61.111 0.00 0.00 40.67 4.35
330 377 2.792290 CTGCGATGAAGCGTGACGG 61.792 63.158 7.25 0.00 40.67 4.79
331 378 2.506217 GCGATGAAGCGTGACGGA 60.506 61.111 7.25 0.00 0.00 4.69
332 379 2.508891 GCGATGAAGCGTGACGGAG 61.509 63.158 7.25 0.00 0.00 4.63
333 380 2.508891 CGATGAAGCGTGACGGAGC 61.509 63.158 7.25 0.00 0.00 4.70
334 381 1.153745 GATGAAGCGTGACGGAGCT 60.154 57.895 7.25 0.00 46.97 4.09
338 385 2.973899 AGCGTGACGGAGCTTCAT 59.026 55.556 7.25 0.00 41.52 2.57
339 386 1.293498 AGCGTGACGGAGCTTCATT 59.707 52.632 7.25 0.00 41.52 2.57
340 387 1.016130 AGCGTGACGGAGCTTCATTG 61.016 55.000 7.25 0.00 41.52 2.82
341 388 1.014044 GCGTGACGGAGCTTCATTGA 61.014 55.000 7.25 0.00 0.00 2.57
342 389 1.428448 CGTGACGGAGCTTCATTGAA 58.572 50.000 0.00 0.00 0.00 2.69
343 390 1.391485 CGTGACGGAGCTTCATTGAAG 59.609 52.381 19.92 19.92 42.03 3.02
351 398 3.955429 CTTCATTGAAGCACGTCGG 57.045 52.632 13.20 0.00 32.78 4.79
352 399 1.428448 CTTCATTGAAGCACGTCGGA 58.572 50.000 13.20 0.00 32.78 4.55
353 400 1.391485 CTTCATTGAAGCACGTCGGAG 59.609 52.381 13.20 0.00 32.78 4.63
354 401 1.014044 TCATTGAAGCACGTCGGAGC 61.014 55.000 0.00 0.00 0.00 4.70
355 402 1.005037 ATTGAAGCACGTCGGAGCA 60.005 52.632 13.29 0.00 31.58 4.26
356 403 1.016130 ATTGAAGCACGTCGGAGCAG 61.016 55.000 13.29 0.00 31.58 4.24
357 404 3.482783 GAAGCACGTCGGAGCAGC 61.483 66.667 13.29 2.03 31.58 5.25
364 411 2.876645 GTCGGAGCAGCGACGAAG 60.877 66.667 14.68 0.00 38.46 3.79
365 412 4.778415 TCGGAGCAGCGACGAAGC 62.778 66.667 11.34 0.65 33.21 3.86
401 448 2.267681 GAAGCATGCCAGAGCTGCAC 62.268 60.000 15.66 0.00 42.38 4.57
402 449 2.750637 GCATGCCAGAGCTGCACT 60.751 61.111 6.36 0.00 42.38 4.40
403 450 1.450848 GCATGCCAGAGCTGCACTA 60.451 57.895 6.36 0.00 42.38 2.74
404 451 1.028330 GCATGCCAGAGCTGCACTAA 61.028 55.000 6.36 0.00 42.38 2.24
405 452 1.456296 CATGCCAGAGCTGCACTAAA 58.544 50.000 1.02 0.00 42.38 1.85
406 453 1.400846 CATGCCAGAGCTGCACTAAAG 59.599 52.381 1.02 0.00 42.38 1.85
407 454 0.397941 TGCCAGAGCTGCACTAAAGT 59.602 50.000 1.02 0.00 40.80 2.66
408 455 1.623311 TGCCAGAGCTGCACTAAAGTA 59.377 47.619 1.02 0.00 40.80 2.24
409 456 2.003301 GCCAGAGCTGCACTAAAGTAC 58.997 52.381 1.02 0.00 35.50 2.73
410 457 2.612972 GCCAGAGCTGCACTAAAGTACA 60.613 50.000 1.02 0.00 35.50 2.90
411 458 2.996621 CCAGAGCTGCACTAAAGTACAC 59.003 50.000 1.02 0.00 0.00 2.90
412 459 2.996621 CAGAGCTGCACTAAAGTACACC 59.003 50.000 1.02 0.00 0.00 4.16
413 460 1.993370 GAGCTGCACTAAAGTACACCG 59.007 52.381 1.02 0.00 0.00 4.94
414 461 1.076332 GCTGCACTAAAGTACACCGG 58.924 55.000 0.00 0.00 0.00 5.28
415 462 1.337447 GCTGCACTAAAGTACACCGGA 60.337 52.381 9.46 0.00 0.00 5.14
416 463 2.607187 CTGCACTAAAGTACACCGGAG 58.393 52.381 9.46 1.26 0.00 4.63
417 464 1.337447 TGCACTAAAGTACACCGGAGC 60.337 52.381 9.46 0.00 0.00 4.70
418 465 1.067071 GCACTAAAGTACACCGGAGCT 60.067 52.381 9.46 0.00 0.00 4.09
419 466 2.607187 CACTAAAGTACACCGGAGCTG 58.393 52.381 9.46 0.00 0.00 4.24
420 467 1.067071 ACTAAAGTACACCGGAGCTGC 60.067 52.381 9.46 0.00 0.00 5.25
421 468 0.970640 TAAAGTACACCGGAGCTGCA 59.029 50.000 9.46 0.00 0.00 4.41
422 469 0.320771 AAAGTACACCGGAGCTGCAG 60.321 55.000 9.46 10.11 0.00 4.41
423 470 1.472662 AAGTACACCGGAGCTGCAGT 61.473 55.000 16.64 0.00 0.00 4.40
434 481 0.033920 AGCTGCAGTGAATCACGTCA 59.966 50.000 16.64 8.79 39.64 4.35
448 495 2.027625 CGTCAGGGGTCGTTGAAGC 61.028 63.158 0.00 0.00 0.00 3.86
454 501 1.006571 GGGTCGTTGAAGCTCGTCA 60.007 57.895 0.00 0.00 0.00 4.35
455 502 1.009389 GGGTCGTTGAAGCTCGTCAG 61.009 60.000 0.00 0.00 0.00 3.51
456 503 1.009389 GGTCGTTGAAGCTCGTCAGG 61.009 60.000 0.00 0.00 0.00 3.86
467 514 2.111999 CTCGTCAGGGGTTGCAAGGA 62.112 60.000 0.00 0.00 0.00 3.36
472 519 4.056125 GGGGTTGCAAGGAAGCGC 62.056 66.667 0.00 0.00 37.31 5.92
474 521 2.564721 GGGTTGCAAGGAAGCGCTT 61.565 57.895 25.35 25.35 37.31 4.68
486 533 2.439156 GCGCTTCCAGGGATTGCT 60.439 61.111 0.00 0.00 0.00 3.91
495 542 1.492176 CCAGGGATTGCTATGGAGTGT 59.508 52.381 0.00 0.00 34.60 3.55
522 569 3.332493 CTGCAATGGAGTGCCGCAC 62.332 63.158 16.04 16.04 44.26 5.34
534 581 3.803082 CCGCACGGTGCTTCCATG 61.803 66.667 28.42 13.13 42.25 3.66
535 582 3.803082 CGCACGGTGCTTCCATGG 61.803 66.667 28.42 4.97 42.25 3.66
586 633 1.796617 GCTCGTCATTGCCATTTGAGC 60.797 52.381 0.00 0.00 40.31 4.26
588 635 1.469703 TCGTCATTGCCATTTGAGCAG 59.530 47.619 0.00 0.00 42.17 4.24
594 641 2.277591 GCCATTTGAGCAGCACCCA 61.278 57.895 0.00 0.00 0.00 4.51
595 642 1.888018 CCATTTGAGCAGCACCCAG 59.112 57.895 0.00 0.00 0.00 4.45
624 671 1.302511 GGTGCTGTGATGGAACGGT 60.303 57.895 0.00 0.00 0.00 4.83
625 672 1.298859 GGTGCTGTGATGGAACGGTC 61.299 60.000 0.00 0.00 0.00 4.79
626 673 1.374125 TGCTGTGATGGAACGGTCG 60.374 57.895 0.00 0.00 0.00 4.79
627 674 2.740714 GCTGTGATGGAACGGTCGC 61.741 63.158 0.00 0.00 0.00 5.19
628 675 2.047655 TGTGATGGAACGGTCGCC 60.048 61.111 0.00 0.00 0.00 5.54
660 707 3.403057 CGCGAGGTCACCAACGTG 61.403 66.667 0.00 12.49 41.72 4.49
661 708 3.712881 GCGAGGTCACCAACGTGC 61.713 66.667 13.52 0.00 40.04 5.34
662 709 2.029073 CGAGGTCACCAACGTGCT 59.971 61.111 0.00 0.00 40.04 4.40
663 710 2.310233 CGAGGTCACCAACGTGCTG 61.310 63.158 0.00 0.00 40.04 4.41
664 711 1.227556 GAGGTCACCAACGTGCTGT 60.228 57.895 0.00 0.00 40.04 4.40
665 712 1.498865 GAGGTCACCAACGTGCTGTG 61.499 60.000 0.00 6.13 40.04 3.66
666 713 1.522806 GGTCACCAACGTGCTGTGA 60.523 57.895 10.07 10.07 40.04 3.58
667 714 1.498865 GGTCACCAACGTGCTGTGAG 61.499 60.000 13.42 0.00 39.50 3.51
668 715 1.227527 TCACCAACGTGCTGTGAGG 60.228 57.895 10.07 0.00 40.04 3.86
669 716 1.523711 CACCAACGTGCTGTGAGGT 60.524 57.895 6.53 0.00 39.61 3.85
670 717 0.249699 CACCAACGTGCTGTGAGGTA 60.250 55.000 6.53 0.00 37.62 3.08
671 718 0.033504 ACCAACGTGCTGTGAGGTAG 59.966 55.000 0.00 0.00 37.86 3.18
672 719 1.291877 CCAACGTGCTGTGAGGTAGC 61.292 60.000 0.00 0.00 41.49 3.58
677 724 1.586541 TGCTGTGAGGTAGCAGACG 59.413 57.895 0.00 0.00 45.52 4.18
678 725 1.153745 GCTGTGAGGTAGCAGACGG 60.154 63.158 0.00 0.00 40.81 4.79
679 726 1.513158 CTGTGAGGTAGCAGACGGG 59.487 63.158 0.00 0.00 34.87 5.28
680 727 1.228769 TGTGAGGTAGCAGACGGGT 60.229 57.895 0.00 0.00 0.00 5.28
681 728 1.215647 GTGAGGTAGCAGACGGGTG 59.784 63.158 0.00 0.00 0.00 4.61
682 729 2.184579 GAGGTAGCAGACGGGTGC 59.815 66.667 3.18 3.18 44.35 5.01
683 730 2.603473 AGGTAGCAGACGGGTGCA 60.603 61.111 13.07 0.00 46.60 4.57
684 731 2.125512 GGTAGCAGACGGGTGCAG 60.126 66.667 13.07 0.00 46.60 4.41
685 732 2.646175 GGTAGCAGACGGGTGCAGA 61.646 63.158 13.07 0.00 46.60 4.26
686 733 1.292223 GTAGCAGACGGGTGCAGAA 59.708 57.895 13.07 0.00 46.60 3.02
687 734 1.014564 GTAGCAGACGGGTGCAGAAC 61.015 60.000 13.07 5.22 46.60 3.01
688 735 1.185618 TAGCAGACGGGTGCAGAACT 61.186 55.000 13.07 0.00 46.60 3.01
689 736 2.320587 GCAGACGGGTGCAGAACTG 61.321 63.158 6.40 0.00 43.41 3.16
704 751 5.199024 CAGAACTGCAGATACTAGATGCT 57.801 43.478 23.35 0.00 40.62 3.79
705 752 4.983538 CAGAACTGCAGATACTAGATGCTG 59.016 45.833 23.35 5.44 42.51 4.41
707 754 4.319139 ACTGCAGATACTAGATGCTGTG 57.681 45.455 23.35 11.41 46.22 3.66
708 755 3.058450 CTGCAGATACTAGATGCTGTGC 58.942 50.000 8.42 0.00 40.62 4.57
709 756 2.057316 GCAGATACTAGATGCTGTGCG 58.943 52.381 0.00 0.00 37.00 5.34
710 757 2.544694 GCAGATACTAGATGCTGTGCGT 60.545 50.000 0.00 0.00 37.00 5.24
711 758 3.048501 CAGATACTAGATGCTGTGCGTG 58.951 50.000 0.00 0.00 0.00 5.34
712 759 2.035193 AGATACTAGATGCTGTGCGTGG 59.965 50.000 0.00 0.00 0.00 4.94
713 760 1.182667 TACTAGATGCTGTGCGTGGT 58.817 50.000 0.00 0.00 0.00 4.16
714 761 0.390340 ACTAGATGCTGTGCGTGGTG 60.390 55.000 0.00 0.00 0.00 4.17
715 762 1.079197 TAGATGCTGTGCGTGGTGG 60.079 57.895 0.00 0.00 0.00 4.61
716 763 1.540435 TAGATGCTGTGCGTGGTGGA 61.540 55.000 0.00 0.00 0.00 4.02
717 764 2.669569 ATGCTGTGCGTGGTGGAC 60.670 61.111 0.00 0.00 39.78 4.02
723 770 3.228017 TGCGTGGTGGACGGAAGA 61.228 61.111 0.00 0.00 46.46 2.87
724 771 2.798364 TGCGTGGTGGACGGAAGAA 61.798 57.895 0.00 0.00 46.46 2.52
725 772 2.981977 TGCGTGGTGGACGGAAGAAC 62.982 60.000 0.00 0.00 46.46 3.01
726 773 1.068417 CGTGGTGGACGGAAGAACA 59.932 57.895 0.00 0.00 44.85 3.18
727 774 0.531090 CGTGGTGGACGGAAGAACAA 60.531 55.000 0.00 0.00 44.85 2.83
728 775 1.670791 GTGGTGGACGGAAGAACAAA 58.329 50.000 0.00 0.00 0.00 2.83
729 776 1.602377 GTGGTGGACGGAAGAACAAAG 59.398 52.381 0.00 0.00 0.00 2.77
730 777 1.235724 GGTGGACGGAAGAACAAAGG 58.764 55.000 0.00 0.00 0.00 3.11
731 778 1.202722 GGTGGACGGAAGAACAAAGGA 60.203 52.381 0.00 0.00 0.00 3.36
732 779 2.143925 GTGGACGGAAGAACAAAGGAG 58.856 52.381 0.00 0.00 0.00 3.69
733 780 1.071699 TGGACGGAAGAACAAAGGAGG 59.928 52.381 0.00 0.00 0.00 4.30
734 781 1.346722 GGACGGAAGAACAAAGGAGGA 59.653 52.381 0.00 0.00 0.00 3.71
735 782 2.224450 GGACGGAAGAACAAAGGAGGAA 60.224 50.000 0.00 0.00 0.00 3.36
736 783 3.067833 GACGGAAGAACAAAGGAGGAAG 58.932 50.000 0.00 0.00 0.00 3.46
737 784 2.704065 ACGGAAGAACAAAGGAGGAAGA 59.296 45.455 0.00 0.00 0.00 2.87
738 785 3.135895 ACGGAAGAACAAAGGAGGAAGAA 59.864 43.478 0.00 0.00 0.00 2.52
739 786 3.748568 CGGAAGAACAAAGGAGGAAGAAG 59.251 47.826 0.00 0.00 0.00 2.85
740 787 4.720046 GGAAGAACAAAGGAGGAAGAAGT 58.280 43.478 0.00 0.00 0.00 3.01
741 788 5.133941 GGAAGAACAAAGGAGGAAGAAGTT 58.866 41.667 0.00 0.00 0.00 2.66
742 789 5.009110 GGAAGAACAAAGGAGGAAGAAGTTG 59.991 44.000 0.00 0.00 0.00 3.16
743 790 5.373812 AGAACAAAGGAGGAAGAAGTTGA 57.626 39.130 0.00 0.00 0.00 3.18
744 791 5.126779 AGAACAAAGGAGGAAGAAGTTGAC 58.873 41.667 0.00 0.00 0.00 3.18
745 792 4.779993 ACAAAGGAGGAAGAAGTTGACT 57.220 40.909 0.00 0.00 0.00 3.41
746 793 4.709250 ACAAAGGAGGAAGAAGTTGACTC 58.291 43.478 0.00 0.00 0.00 3.36
747 794 4.068599 CAAAGGAGGAAGAAGTTGACTCC 58.931 47.826 0.00 0.00 46.27 3.85
748 795 2.371910 GGAGGAAGAAGTTGACTCCG 57.628 55.000 0.00 0.00 38.44 4.63
749 796 1.619332 GGAGGAAGAAGTTGACTCCGT 59.381 52.381 0.00 0.00 38.44 4.69
750 797 2.352912 GGAGGAAGAAGTTGACTCCGTC 60.353 54.545 0.00 0.00 38.44 4.79
751 798 2.559231 GAGGAAGAAGTTGACTCCGTCT 59.441 50.000 0.00 0.00 33.15 4.18
752 799 2.297597 AGGAAGAAGTTGACTCCGTCTG 59.702 50.000 0.00 0.00 33.15 3.51
753 800 2.036089 GGAAGAAGTTGACTCCGTCTGT 59.964 50.000 0.00 0.00 33.15 3.41
754 801 3.492829 GGAAGAAGTTGACTCCGTCTGTT 60.493 47.826 0.00 0.00 33.15 3.16
755 802 3.099267 AGAAGTTGACTCCGTCTGTTG 57.901 47.619 0.00 0.00 33.15 3.33
756 803 2.431057 AGAAGTTGACTCCGTCTGTTGT 59.569 45.455 0.00 0.00 33.15 3.32
757 804 2.225068 AGTTGACTCCGTCTGTTGTG 57.775 50.000 0.00 0.00 33.15 3.33
758 805 1.754803 AGTTGACTCCGTCTGTTGTGA 59.245 47.619 0.00 0.00 33.15 3.58
759 806 2.365617 AGTTGACTCCGTCTGTTGTGAT 59.634 45.455 0.00 0.00 33.15 3.06
760 807 2.724977 TGACTCCGTCTGTTGTGATC 57.275 50.000 0.00 0.00 33.15 2.92
761 808 1.068541 TGACTCCGTCTGTTGTGATCG 60.069 52.381 0.00 0.00 33.15 3.69
762 809 0.388649 ACTCCGTCTGTTGTGATCGC 60.389 55.000 0.00 0.00 0.00 4.58
763 810 0.388520 CTCCGTCTGTTGTGATCGCA 60.389 55.000 4.45 4.45 0.00 5.10
764 811 0.666274 TCCGTCTGTTGTGATCGCAC 60.666 55.000 8.86 5.25 45.35 5.34
776 823 3.775065 ATCGCACGATCAGTATCCG 57.225 52.632 0.00 0.00 0.00 4.18
777 824 0.952280 ATCGCACGATCAGTATCCGT 59.048 50.000 0.00 0.00 0.00 4.69
778 825 0.306840 TCGCACGATCAGTATCCGTC 59.693 55.000 0.00 0.00 0.00 4.79
779 826 0.028902 CGCACGATCAGTATCCGTCA 59.971 55.000 0.00 0.00 0.00 4.35
780 827 1.759994 GCACGATCAGTATCCGTCAG 58.240 55.000 0.00 0.00 0.00 3.51
781 828 1.333931 GCACGATCAGTATCCGTCAGA 59.666 52.381 0.00 0.00 0.00 3.27
782 829 2.030717 GCACGATCAGTATCCGTCAGAT 60.031 50.000 0.00 0.00 39.15 2.90
783 830 3.816091 CACGATCAGTATCCGTCAGATC 58.184 50.000 0.00 0.00 36.33 2.75
793 840 2.105128 GTCAGATCGGACGGCTGG 59.895 66.667 10.29 0.00 0.00 4.85
794 841 3.838271 TCAGATCGGACGGCTGGC 61.838 66.667 0.00 0.00 0.00 4.85
795 842 3.842923 CAGATCGGACGGCTGGCT 61.843 66.667 0.00 0.00 0.00 4.75
796 843 2.123854 AGATCGGACGGCTGGCTA 60.124 61.111 0.00 0.00 0.00 3.93
797 844 2.196925 AGATCGGACGGCTGGCTAG 61.197 63.158 0.00 0.00 0.00 3.42
798 845 3.214250 GATCGGACGGCTGGCTAGG 62.214 68.421 0.00 0.00 0.00 3.02
805 852 3.861797 GGCTGGCTAGGCGGCTTA 61.862 66.667 39.24 11.24 39.88 3.09
806 853 2.189521 GCTGGCTAGGCGGCTTAA 59.810 61.111 35.85 7.20 39.32 1.85
807 854 1.227973 GCTGGCTAGGCGGCTTAAT 60.228 57.895 35.85 0.00 39.32 1.40
808 855 0.819666 GCTGGCTAGGCGGCTTAATT 60.820 55.000 35.85 0.00 39.32 1.40
809 856 1.230324 CTGGCTAGGCGGCTTAATTC 58.770 55.000 19.76 3.69 39.32 2.17
810 857 0.837272 TGGCTAGGCGGCTTAATTCT 59.163 50.000 19.76 0.00 39.32 2.40
811 858 1.230324 GGCTAGGCGGCTTAATTCTG 58.770 55.000 19.76 0.37 34.85 3.02
812 859 1.230324 GCTAGGCGGCTTAATTCTGG 58.770 55.000 19.76 0.00 0.00 3.86
813 860 1.202651 GCTAGGCGGCTTAATTCTGGA 60.203 52.381 19.76 0.00 0.00 3.86
814 861 2.745152 GCTAGGCGGCTTAATTCTGGAA 60.745 50.000 19.76 0.00 0.00 3.53
815 862 1.751437 AGGCGGCTTAATTCTGGAAC 58.249 50.000 5.25 0.00 0.00 3.62
816 863 1.004277 AGGCGGCTTAATTCTGGAACA 59.996 47.619 5.25 0.00 0.00 3.18
817 864 1.816224 GGCGGCTTAATTCTGGAACAA 59.184 47.619 0.00 0.00 38.70 2.83
818 865 2.230266 GGCGGCTTAATTCTGGAACAAA 59.770 45.455 0.00 0.00 38.70 2.83
819 866 3.119137 GGCGGCTTAATTCTGGAACAAAT 60.119 43.478 0.00 0.00 38.70 2.32
820 867 4.105486 GCGGCTTAATTCTGGAACAAATC 58.895 43.478 0.00 0.00 38.70 2.17
821 868 4.380444 GCGGCTTAATTCTGGAACAAATCA 60.380 41.667 0.00 0.00 38.70 2.57
822 869 5.679638 GCGGCTTAATTCTGGAACAAATCAT 60.680 40.000 0.00 0.00 38.70 2.45
823 870 5.973565 CGGCTTAATTCTGGAACAAATCATC 59.026 40.000 0.00 0.00 38.70 2.92
824 871 6.183360 CGGCTTAATTCTGGAACAAATCATCT 60.183 38.462 0.00 0.00 38.70 2.90
825 872 6.976925 GGCTTAATTCTGGAACAAATCATCTG 59.023 38.462 0.00 0.00 38.70 2.90
826 873 6.976925 GCTTAATTCTGGAACAAATCATCTGG 59.023 38.462 0.00 0.00 38.70 3.86
827 874 4.996788 ATTCTGGAACAAATCATCTGGC 57.003 40.909 0.00 0.00 38.70 4.85
828 875 3.726557 TCTGGAACAAATCATCTGGCT 57.273 42.857 0.00 0.00 38.70 4.75
829 876 3.349927 TCTGGAACAAATCATCTGGCTG 58.650 45.455 0.00 0.00 38.70 4.85
830 877 3.009363 TCTGGAACAAATCATCTGGCTGA 59.991 43.478 0.00 0.00 38.70 4.26
831 878 3.952323 CTGGAACAAATCATCTGGCTGAT 59.048 43.478 0.45 0.45 38.70 2.90
832 879 4.346730 TGGAACAAATCATCTGGCTGATT 58.653 39.130 3.90 0.00 45.48 2.57
838 885 1.466856 TCATCTGGCTGATTTGTGGC 58.533 50.000 3.90 0.00 32.05 5.01
839 886 1.179152 CATCTGGCTGATTTGTGGCA 58.821 50.000 3.90 0.00 37.22 4.92
982 1040 2.124320 GAGCCCATTAAGCCGCCA 60.124 61.111 0.00 0.00 0.00 5.69
983 1041 1.529244 GAGCCCATTAAGCCGCCAT 60.529 57.895 0.00 0.00 0.00 4.40
992 1050 0.908910 TAAGCCGCCATTCCTTCTCA 59.091 50.000 0.00 0.00 0.00 3.27
996 1054 0.322456 CCGCCATTCCTTCTCACCAA 60.322 55.000 0.00 0.00 0.00 3.67
997 1055 0.804989 CGCCATTCCTTCTCACCAAC 59.195 55.000 0.00 0.00 0.00 3.77
1020 1091 2.281761 CACCGGCAAGTCCAGCTT 60.282 61.111 0.00 0.00 38.08 3.74
1230 1326 3.334751 CGCGCGTGGACTTTGTCA 61.335 61.111 24.19 0.00 33.68 3.58
1231 1327 2.667318 CGCGCGTGGACTTTGTCAT 61.667 57.895 24.19 0.00 33.68 3.06
1241 1337 0.250901 ACTTTGTCATGCTCCCGCTT 60.251 50.000 0.00 0.00 36.97 4.68
1245 1341 3.074369 TCATGCTCCCGCTTCCGA 61.074 61.111 0.00 0.00 36.97 4.55
1403 1499 1.687612 CAGGCCTCACTGGGTCATT 59.312 57.895 0.00 0.00 34.84 2.57
1406 1502 1.001641 GCCTCACTGGGTCATTGCT 60.002 57.895 0.00 0.00 36.00 3.91
1409 1505 1.064906 CCTCACTGGGTCATTGCTGAT 60.065 52.381 0.00 0.00 32.98 2.90
1463 1562 2.353803 GCACAAGGTTCGGTAGATCTGT 60.354 50.000 5.18 0.00 0.00 3.41
1483 1602 2.620112 CCGCTTGGCTCCACACTTG 61.620 63.158 0.00 0.00 0.00 3.16
1496 1627 3.758023 TCCACACTTGCACTAATTCCATG 59.242 43.478 0.00 0.00 0.00 3.66
1531 1665 6.883756 AGTATATCTCAGATCTTGCTCGATGA 59.116 38.462 0.00 0.00 0.00 2.92
1567 1701 2.420129 GGTCCCATGCGTGATACTTCTT 60.420 50.000 7.72 0.00 0.00 2.52
1591 1725 1.083806 CCGCTGCTTTGATCGCTACA 61.084 55.000 0.00 0.00 0.00 2.74
1593 1727 1.363744 GCTGCTTTGATCGCTACAGT 58.636 50.000 0.00 0.00 0.00 3.55
1604 1738 2.258591 CTACAGTGCACCGCGACT 59.741 61.111 14.63 0.00 0.00 4.18
1618 1752 2.856089 CGACTCGCTATCGGAACAC 58.144 57.895 0.00 0.00 35.92 3.32
1619 1753 0.924363 CGACTCGCTATCGGAACACG 60.924 60.000 0.00 0.00 46.11 4.49
1620 1754 0.591741 GACTCGCTATCGGAACACGG 60.592 60.000 0.00 0.00 44.45 4.94
1623 1757 2.108362 GCTATCGGAACACGGGGG 59.892 66.667 0.00 0.00 44.45 5.40
1629 1763 4.717313 GGAACACGGGGGAGCACC 62.717 72.222 0.00 0.00 39.11 5.01
1678 1816 2.681778 AGGAGGAGACAGCACCCG 60.682 66.667 0.00 0.00 0.00 5.28
1686 1824 0.680280 AGACAGCACCCGTCTACGAT 60.680 55.000 3.65 0.00 41.91 3.73
1725 1863 1.741770 GTCCATCGTCCAGCGCTTT 60.742 57.895 7.50 0.00 41.07 3.51
1752 1890 0.861837 CGAAAGAGAAGTGTGCGCTT 59.138 50.000 9.73 0.00 0.00 4.68
1782 1920 1.219124 GAGCTGCATCGAGTGGGAA 59.781 57.895 1.02 0.00 0.00 3.97
1821 1959 2.897207 CCAACGGTCATCGGCCTA 59.103 61.111 0.00 0.00 44.45 3.93
1868 2006 3.399181 GTCACCCGATGGAGGCCA 61.399 66.667 5.01 0.00 38.19 5.36
1875 2013 4.101448 GATGGAGGCCACCGTGCT 62.101 66.667 19.75 0.58 35.80 4.40
1923 2061 4.320456 ACCGTGCACTGGCTGGAG 62.320 66.667 22.27 2.83 41.91 3.86
1924 2062 4.320456 CCGTGCACTGGCTGGAGT 62.320 66.667 16.19 0.00 41.91 3.85
1949 2088 1.450312 GCTGGGCTCGTTGCTGTAT 60.450 57.895 3.58 0.00 42.39 2.29
2039 2178 2.636412 CGGGACACGCTTCCTCTGA 61.636 63.158 3.07 0.00 35.76 3.27
2040 2179 1.216710 GGGACACGCTTCCTCTGAG 59.783 63.158 0.00 0.00 35.76 3.35
2160 2299 4.405680 TCATCCACTCGACCATAGACATTT 59.594 41.667 0.00 0.00 0.00 2.32
2230 2369 3.558109 GGGCAGAAGAGCTAAAGTCACTT 60.558 47.826 0.00 0.00 34.17 3.16
2486 2642 0.108281 GGGCTGTTACTTCCTCCGAC 60.108 60.000 0.00 0.00 0.00 4.79
2565 2725 3.862923 CCTCTACATCCCTACCCCCTATA 59.137 52.174 0.00 0.00 0.00 1.31
2575 2735 4.776308 CCCTACCCCCTATATTACTGTCAC 59.224 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.375268 GCGAGATCCATGGCTAGCC 60.375 63.158 27.71 27.71 0.00 3.93
16 17 4.794199 CATGCGAGATCCATGGCT 57.206 55.556 6.96 0.00 37.12 4.75
20 21 3.164479 CCCCCATGCGAGATCCAT 58.836 61.111 0.00 0.00 0.00 3.41
57 58 1.084370 GCGCCAGACATCGCTTTACT 61.084 55.000 0.00 0.00 46.92 2.24
59 60 3.794270 GCGCCAGACATCGCTTTA 58.206 55.556 0.00 0.00 46.92 1.85
92 93 0.035317 AGAGCTCGTCATGTTGGCAA 59.965 50.000 8.37 0.00 0.00 4.52
97 98 1.446792 CCGCAGAGCTCGTCATGTT 60.447 57.895 8.37 0.00 0.00 2.71
101 102 4.056125 CACCCGCAGAGCTCGTCA 62.056 66.667 8.37 0.00 0.00 4.35
109 110 3.535629 CTTCAGCACCACCCGCAGA 62.536 63.158 0.00 0.00 0.00 4.26
114 115 1.303643 CTTCCCTTCAGCACCACCC 60.304 63.158 0.00 0.00 0.00 4.61
136 137 4.133796 GCTCCATTGCAACCCGGC 62.134 66.667 0.00 0.50 0.00 6.13
156 157 0.106868 CTCCATTGCAGCCTCCATCA 60.107 55.000 0.00 0.00 0.00 3.07
157 158 0.106819 ACTCCATTGCAGCCTCCATC 60.107 55.000 0.00 0.00 0.00 3.51
176 177 0.933047 CTTCAACGACTCACGCGACA 60.933 55.000 15.93 0.00 46.94 4.35
178 179 2.014554 GCTTCAACGACTCACGCGA 61.015 57.895 15.93 0.00 46.94 5.87
189 236 3.479269 CTCCGGCGTCGCTTCAAC 61.479 66.667 18.11 0.00 34.56 3.18
197 244 0.459585 TTCATTGTAGCTCCGGCGTC 60.460 55.000 6.01 0.00 44.37 5.19
202 249 1.083806 TGCGCTTCATTGTAGCTCCG 61.084 55.000 9.73 0.13 36.49 4.63
209 256 2.031919 TCCGGTGCGCTTCATTGT 59.968 55.556 9.73 0.00 0.00 2.71
219 266 1.901650 CTTCAACGAAGCTCCGGTGC 61.902 60.000 20.71 20.71 45.97 5.01
221 268 4.675404 CTTCAACGAAGCTCCGGT 57.325 55.556 0.00 0.00 32.78 5.28
228 275 2.170985 CGGCGTGCTTCAACGAAG 59.829 61.111 0.00 0.00 46.49 3.79
229 276 3.342627 CCGGCGTGCTTCAACGAA 61.343 61.111 6.01 0.00 46.49 3.85
230 277 4.595538 ACCGGCGTGCTTCAACGA 62.596 61.111 6.01 0.00 46.49 3.85
231 278 4.368808 CACCGGCGTGCTTCAACG 62.369 66.667 6.01 0.00 46.30 4.10
232 279 2.830285 AACACCGGCGTGCTTCAAC 61.830 57.895 6.01 0.00 44.40 3.18
233 280 2.515057 AACACCGGCGTGCTTCAA 60.515 55.556 6.01 0.00 44.40 2.69
234 281 3.276091 CAACACCGGCGTGCTTCA 61.276 61.111 6.01 0.00 44.40 3.02
235 282 4.683334 GCAACACCGGCGTGCTTC 62.683 66.667 15.36 0.00 44.40 3.86
238 285 4.341502 ATTGCAACACCGGCGTGC 62.342 61.111 15.68 15.68 44.40 5.34
239 286 2.399511 TTCATTGCAACACCGGCGTG 62.400 55.000 0.00 7.05 46.11 5.34
240 287 2.128853 CTTCATTGCAACACCGGCGT 62.129 55.000 0.00 0.00 0.00 5.68
241 288 1.442520 CTTCATTGCAACACCGGCG 60.443 57.895 0.00 0.00 0.00 6.46
242 289 1.734117 GCTTCATTGCAACACCGGC 60.734 57.895 0.00 0.00 0.00 6.13
243 290 0.664166 GTGCTTCATTGCAACACCGG 60.664 55.000 0.00 0.00 45.12 5.28
244 291 0.998226 CGTGCTTCATTGCAACACCG 60.998 55.000 0.00 0.00 45.12 4.94
245 292 1.277495 GCGTGCTTCATTGCAACACC 61.277 55.000 0.00 0.00 45.12 4.16
246 293 1.277495 GGCGTGCTTCATTGCAACAC 61.277 55.000 0.00 3.98 45.12 3.32
247 294 1.007502 GGCGTGCTTCATTGCAACA 60.008 52.632 0.00 0.00 45.12 3.33
248 295 2.082366 CGGCGTGCTTCATTGCAAC 61.082 57.895 0.00 0.00 45.12 4.17
249 296 2.254951 CGGCGTGCTTCATTGCAA 59.745 55.556 0.00 0.00 45.12 4.08
250 297 3.736100 CCGGCGTGCTTCATTGCA 61.736 61.111 6.01 0.00 41.05 4.08
251 298 3.386867 CTCCGGCGTGCTTCATTGC 62.387 63.158 6.01 0.00 0.00 3.56
252 299 2.787249 CTCCGGCGTGCTTCATTG 59.213 61.111 6.01 0.00 0.00 2.82
253 300 3.127533 GCTCCGGCGTGCTTCATT 61.128 61.111 6.01 0.00 0.00 2.57
254 301 4.393155 TGCTCCGGCGTGCTTCAT 62.393 61.111 19.57 0.00 42.25 2.57
263 310 3.267860 CTTCATCGCTGCTCCGGC 61.268 66.667 0.00 0.00 39.26 6.13
264 311 3.267860 GCTTCATCGCTGCTCCGG 61.268 66.667 0.00 0.00 0.00 5.14
265 312 3.624300 CGCTTCATCGCTGCTCCG 61.624 66.667 0.00 0.00 0.00 4.63
266 313 2.510238 ACGCTTCATCGCTGCTCC 60.510 61.111 0.00 0.00 0.00 4.70
267 314 2.699809 CACGCTTCATCGCTGCTC 59.300 61.111 0.00 0.00 0.00 4.26
268 315 3.494336 GCACGCTTCATCGCTGCT 61.494 61.111 0.00 0.00 35.36 4.24
269 316 4.527157 GGCACGCTTCATCGCTGC 62.527 66.667 0.00 0.00 36.50 5.25
281 328 3.181557 CTTCAATGAAGCTCCGGCACG 62.182 57.143 10.30 0.00 41.74 5.34
282 329 0.449388 CTTCAATGAAGCTCCGGCAC 59.551 55.000 10.30 0.00 41.70 5.01
283 330 2.858622 CTTCAATGAAGCTCCGGCA 58.141 52.632 10.30 0.00 41.70 5.69
291 338 1.135315 CCGGCGTGCTTCAATGAAG 59.865 57.895 18.02 18.02 42.03 3.02
292 339 1.298157 CTCCGGCGTGCTTCAATGAA 61.298 55.000 6.01 0.00 0.00 2.57
293 340 1.741401 CTCCGGCGTGCTTCAATGA 60.741 57.895 6.01 0.00 0.00 2.57
294 341 2.787249 CTCCGGCGTGCTTCAATG 59.213 61.111 6.01 0.00 0.00 2.82
295 342 3.127533 GCTCCGGCGTGCTTCAAT 61.128 61.111 6.01 0.00 0.00 2.57
296 343 4.314440 AGCTCCGGCGTGCTTCAA 62.314 61.111 16.80 0.00 44.37 2.69
305 352 3.267860 CTTCATCGCAGCTCCGGC 61.268 66.667 0.00 0.00 39.06 6.13
306 353 3.267860 GCTTCATCGCAGCTCCGG 61.268 66.667 0.00 0.00 34.15 5.14
307 354 3.624300 CGCTTCATCGCAGCTCCG 61.624 66.667 0.00 0.00 34.88 4.63
308 355 2.510238 ACGCTTCATCGCAGCTCC 60.510 61.111 0.00 0.00 34.88 4.70
309 356 1.807165 TCACGCTTCATCGCAGCTC 60.807 57.895 0.00 0.00 34.88 4.09
310 357 2.097038 GTCACGCTTCATCGCAGCT 61.097 57.895 0.00 0.00 34.88 4.24
311 358 2.397252 GTCACGCTTCATCGCAGC 59.603 61.111 0.00 0.00 0.00 5.25
312 359 2.691522 CGTCACGCTTCATCGCAG 59.308 61.111 0.00 0.00 0.00 5.18
313 360 2.809174 CCGTCACGCTTCATCGCA 60.809 61.111 0.00 0.00 0.00 5.10
314 361 2.506217 TCCGTCACGCTTCATCGC 60.506 61.111 0.00 0.00 0.00 4.58
315 362 2.508891 GCTCCGTCACGCTTCATCG 61.509 63.158 0.00 0.00 0.00 3.84
316 363 0.737715 AAGCTCCGTCACGCTTCATC 60.738 55.000 0.00 0.00 42.39 2.92
317 364 1.293498 AAGCTCCGTCACGCTTCAT 59.707 52.632 0.00 0.00 42.39 2.57
318 365 2.734591 AAGCTCCGTCACGCTTCA 59.265 55.556 0.00 0.00 42.39 3.02
321 368 1.016130 CAATGAAGCTCCGTCACGCT 61.016 55.000 0.00 0.00 38.30 5.07
322 369 1.014044 TCAATGAAGCTCCGTCACGC 61.014 55.000 0.00 0.00 0.00 5.34
323 370 1.391485 CTTCAATGAAGCTCCGTCACG 59.609 52.381 10.30 0.00 32.78 4.35
333 380 1.391485 CTCCGACGTGCTTCAATGAAG 59.609 52.381 18.02 18.02 42.03 3.02
334 381 1.428448 CTCCGACGTGCTTCAATGAA 58.572 50.000 0.00 0.00 0.00 2.57
335 382 1.014044 GCTCCGACGTGCTTCAATGA 61.014 55.000 0.00 0.00 0.00 2.57
336 383 1.291184 TGCTCCGACGTGCTTCAATG 61.291 55.000 0.00 0.00 0.00 2.82
337 384 1.005037 TGCTCCGACGTGCTTCAAT 60.005 52.632 0.00 0.00 0.00 2.57
338 385 1.664649 CTGCTCCGACGTGCTTCAA 60.665 57.895 0.00 0.00 0.00 2.69
339 386 2.049156 CTGCTCCGACGTGCTTCA 60.049 61.111 0.00 0.00 0.00 3.02
340 387 3.482783 GCTGCTCCGACGTGCTTC 61.483 66.667 0.00 0.88 0.00 3.86
348 395 4.778415 GCTTCGTCGCTGCTCCGA 62.778 66.667 6.44 6.44 34.40 4.55
350 397 2.510238 ATGCTTCGTCGCTGCTCC 60.510 61.111 0.00 0.00 0.00 4.70
351 398 2.018582 GACATGCTTCGTCGCTGCTC 62.019 60.000 0.00 0.00 0.00 4.26
352 399 2.047844 ACATGCTTCGTCGCTGCT 60.048 55.556 0.00 0.00 0.00 4.24
353 400 2.397252 GACATGCTTCGTCGCTGC 59.603 61.111 0.00 0.00 0.00 5.25
358 405 3.195698 GCCCCGACATGCTTCGTC 61.196 66.667 5.17 0.00 37.29 4.20
359 406 3.254024 AAGCCCCGACATGCTTCGT 62.254 57.895 5.17 0.00 44.12 3.85
360 407 2.436646 AAGCCCCGACATGCTTCG 60.437 61.111 0.00 0.00 44.12 3.79
363 410 1.033746 CAATGAAGCCCCGACATGCT 61.034 55.000 0.00 0.00 40.17 3.79
364 411 1.031571 TCAATGAAGCCCCGACATGC 61.032 55.000 0.00 0.00 0.00 4.06
365 412 1.402968 CTTCAATGAAGCCCCGACATG 59.597 52.381 10.30 0.00 32.78 3.21
377 424 1.100510 GCTCTGGCATGCTTCAATGA 58.899 50.000 18.92 6.21 38.54 2.57
387 434 1.004044 ACTTTAGTGCAGCTCTGGCAT 59.996 47.619 7.26 0.00 44.11 4.40
401 448 1.067142 TGCAGCTCCGGTGTACTTTAG 60.067 52.381 0.00 0.00 33.19 1.85
402 449 0.970640 TGCAGCTCCGGTGTACTTTA 59.029 50.000 0.00 0.00 33.19 1.85
403 450 0.320771 CTGCAGCTCCGGTGTACTTT 60.321 55.000 0.00 0.00 33.19 2.66
404 451 1.293498 CTGCAGCTCCGGTGTACTT 59.707 57.895 0.00 0.00 33.19 2.24
405 452 1.908793 ACTGCAGCTCCGGTGTACT 60.909 57.895 15.27 0.00 33.19 2.73
406 453 1.738099 CACTGCAGCTCCGGTGTAC 60.738 63.158 15.27 0.00 37.33 2.90
407 454 1.468506 TTCACTGCAGCTCCGGTGTA 61.469 55.000 16.23 4.02 41.68 2.90
408 455 2.116983 ATTCACTGCAGCTCCGGTGT 62.117 55.000 16.23 0.00 41.68 4.16
409 456 1.364626 GATTCACTGCAGCTCCGGTG 61.365 60.000 15.27 10.60 42.21 4.94
410 457 1.078848 GATTCACTGCAGCTCCGGT 60.079 57.895 15.27 0.00 0.00 5.28
411 458 1.078918 TGATTCACTGCAGCTCCGG 60.079 57.895 15.27 0.00 0.00 5.14
412 459 1.690283 CGTGATTCACTGCAGCTCCG 61.690 60.000 15.27 7.87 31.34 4.63
413 460 0.671781 ACGTGATTCACTGCAGCTCC 60.672 55.000 15.27 0.00 31.34 4.70
414 461 0.718343 GACGTGATTCACTGCAGCTC 59.282 55.000 15.27 6.44 31.34 4.09
415 462 0.033920 TGACGTGATTCACTGCAGCT 59.966 50.000 15.27 0.00 31.34 4.24
416 463 0.441533 CTGACGTGATTCACTGCAGC 59.558 55.000 15.27 0.00 30.93 5.25
417 464 1.073964 CCTGACGTGATTCACTGCAG 58.926 55.000 13.48 13.48 34.97 4.41
418 465 0.320683 CCCTGACGTGATTCACTGCA 60.321 55.000 14.54 10.76 31.34 4.41
419 466 1.021390 CCCCTGACGTGATTCACTGC 61.021 60.000 14.54 6.96 31.34 4.40
420 467 0.321671 ACCCCTGACGTGATTCACTG 59.678 55.000 14.54 10.35 31.34 3.66
421 468 0.608640 GACCCCTGACGTGATTCACT 59.391 55.000 14.54 2.27 31.34 3.41
422 469 0.736325 CGACCCCTGACGTGATTCAC 60.736 60.000 6.73 6.73 0.00 3.18
423 470 1.183030 ACGACCCCTGACGTGATTCA 61.183 55.000 0.00 0.00 41.15 2.57
434 481 2.156051 GACGAGCTTCAACGACCCCT 62.156 60.000 0.00 0.00 0.00 4.79
448 495 1.672356 CCTTGCAACCCCTGACGAG 60.672 63.158 0.00 0.00 0.00 4.18
454 501 2.282462 CGCTTCCTTGCAACCCCT 60.282 61.111 0.00 0.00 0.00 4.79
455 502 4.056125 GCGCTTCCTTGCAACCCC 62.056 66.667 0.00 0.00 0.00 4.95
456 503 2.477972 GAAGCGCTTCCTTGCAACCC 62.478 60.000 34.88 10.47 33.64 4.11
467 514 2.048603 GCAATCCCTGGAAGCGCTT 61.049 57.895 25.35 25.35 0.00 4.68
472 519 2.441001 ACTCCATAGCAATCCCTGGAAG 59.559 50.000 0.00 0.00 37.34 3.46
474 521 1.770658 CACTCCATAGCAATCCCTGGA 59.229 52.381 0.00 0.00 36.40 3.86
477 524 1.414181 CGACACTCCATAGCAATCCCT 59.586 52.381 0.00 0.00 0.00 4.20
479 526 2.604046 ACGACACTCCATAGCAATCC 57.396 50.000 0.00 0.00 0.00 3.01
486 533 0.907704 AGCCCCAACGACACTCCATA 60.908 55.000 0.00 0.00 0.00 2.74
495 542 2.676121 CCATTGCAGCCCCAACGA 60.676 61.111 0.00 0.00 0.00 3.85
529 576 0.111061 AGCACAACAGCTTCCATGGA 59.889 50.000 11.44 11.44 43.70 3.41
534 581 0.039708 GCTTCAGCACAACAGCTTCC 60.040 55.000 0.00 0.00 43.70 3.46
535 582 0.950116 AGCTTCAGCACAACAGCTTC 59.050 50.000 0.75 0.00 43.70 3.86
571 618 1.067425 GTGCTGCTCAAATGGCAATGA 60.067 47.619 0.00 6.24 39.30 2.57
595 642 4.864334 CAGCACCGGGGAGCCATC 62.864 72.222 8.67 0.00 32.18 3.51
613 660 4.444838 CCGGCGACCGTTCCATCA 62.445 66.667 9.30 0.00 46.80 3.07
634 681 4.803426 GACCTCGCGGCACTGGAG 62.803 72.222 6.13 0.00 0.00 3.86
639 686 4.980805 TTGGTGACCTCGCGGCAC 62.981 66.667 6.13 9.89 36.92 5.01
640 687 4.980805 GTTGGTGACCTCGCGGCA 62.981 66.667 6.13 0.00 0.00 5.69
642 689 4.657824 ACGTTGGTGACCTCGCGG 62.658 66.667 6.13 0.00 0.00 6.46
652 699 0.033504 CTACCTCACAGCACGTTGGT 59.966 55.000 0.00 0.00 36.28 3.67
653 700 1.291877 GCTACCTCACAGCACGTTGG 61.292 60.000 0.00 0.00 38.93 3.77
654 701 0.599991 TGCTACCTCACAGCACGTTG 60.600 55.000 0.00 0.00 43.90 4.10
655 702 0.319900 CTGCTACCTCACAGCACGTT 60.320 55.000 0.00 0.00 43.90 3.99
656 703 1.179174 TCTGCTACCTCACAGCACGT 61.179 55.000 0.00 0.00 43.90 4.49
657 704 0.734253 GTCTGCTACCTCACAGCACG 60.734 60.000 0.00 0.00 43.90 5.34
658 705 0.734253 CGTCTGCTACCTCACAGCAC 60.734 60.000 0.00 0.00 43.90 4.40
659 706 1.586541 CGTCTGCTACCTCACAGCA 59.413 57.895 0.00 0.00 46.47 4.41
660 707 1.153745 CCGTCTGCTACCTCACAGC 60.154 63.158 0.00 0.00 39.56 4.40
661 708 1.251527 ACCCGTCTGCTACCTCACAG 61.252 60.000 0.00 0.00 35.15 3.66
662 709 1.228769 ACCCGTCTGCTACCTCACA 60.229 57.895 0.00 0.00 0.00 3.58
663 710 1.215647 CACCCGTCTGCTACCTCAC 59.784 63.158 0.00 0.00 0.00 3.51
664 711 2.646175 GCACCCGTCTGCTACCTCA 61.646 63.158 0.00 0.00 34.06 3.86
665 712 2.184579 GCACCCGTCTGCTACCTC 59.815 66.667 0.00 0.00 34.06 3.85
666 713 2.603473 TGCACCCGTCTGCTACCT 60.603 61.111 3.50 0.00 38.07 3.08
667 714 2.125512 CTGCACCCGTCTGCTACC 60.126 66.667 3.50 0.00 38.07 3.18
668 715 1.014564 GTTCTGCACCCGTCTGCTAC 61.015 60.000 3.50 0.00 38.07 3.58
669 716 1.185618 AGTTCTGCACCCGTCTGCTA 61.186 55.000 3.50 0.00 38.07 3.49
670 717 2.031163 GTTCTGCACCCGTCTGCT 59.969 61.111 3.50 0.00 38.07 4.24
671 718 2.031163 AGTTCTGCACCCGTCTGC 59.969 61.111 0.00 0.00 37.70 4.26
672 719 2.320587 GCAGTTCTGCACCCGTCTG 61.321 63.158 18.26 0.00 34.41 3.51
673 720 2.031163 GCAGTTCTGCACCCGTCT 59.969 61.111 18.26 0.00 34.41 4.18
674 721 2.280797 TGCAGTTCTGCACCCGTC 60.281 61.111 21.30 0.00 40.23 4.79
675 722 2.116983 ATCTGCAGTTCTGCACCCGT 62.117 55.000 21.30 6.94 40.23 5.28
676 723 0.108186 TATCTGCAGTTCTGCACCCG 60.108 55.000 21.30 13.24 40.23 5.28
677 724 1.065854 AGTATCTGCAGTTCTGCACCC 60.066 52.381 21.30 10.52 40.23 4.61
678 725 2.393271 AGTATCTGCAGTTCTGCACC 57.607 50.000 21.30 10.81 40.23 5.01
679 726 4.377839 TCTAGTATCTGCAGTTCTGCAC 57.622 45.455 21.30 12.78 40.23 4.57
680 727 4.738839 GCATCTAGTATCTGCAGTTCTGCA 60.739 45.833 23.14 23.14 43.22 4.41
681 728 3.740321 GCATCTAGTATCTGCAGTTCTGC 59.260 47.826 14.67 16.65 35.96 4.26
682 729 4.983538 CAGCATCTAGTATCTGCAGTTCTG 59.016 45.833 14.67 2.80 38.37 3.02
683 730 4.648762 ACAGCATCTAGTATCTGCAGTTCT 59.351 41.667 14.67 12.53 38.37 3.01
684 731 4.744137 CACAGCATCTAGTATCTGCAGTTC 59.256 45.833 14.67 5.58 38.37 3.01
685 732 4.691175 CACAGCATCTAGTATCTGCAGTT 58.309 43.478 14.67 8.22 38.37 3.16
686 733 3.492309 GCACAGCATCTAGTATCTGCAGT 60.492 47.826 14.67 3.75 38.37 4.40
687 734 3.058450 GCACAGCATCTAGTATCTGCAG 58.942 50.000 7.63 7.63 38.37 4.41
688 735 2.544486 CGCACAGCATCTAGTATCTGCA 60.544 50.000 10.38 0.00 38.37 4.41
689 736 2.057316 CGCACAGCATCTAGTATCTGC 58.943 52.381 7.46 5.07 36.15 4.26
690 737 3.048501 CACGCACAGCATCTAGTATCTG 58.951 50.000 0.00 0.00 0.00 2.90
691 738 2.035193 CCACGCACAGCATCTAGTATCT 59.965 50.000 0.00 0.00 0.00 1.98
692 739 2.223829 ACCACGCACAGCATCTAGTATC 60.224 50.000 0.00 0.00 0.00 2.24
693 740 1.757118 ACCACGCACAGCATCTAGTAT 59.243 47.619 0.00 0.00 0.00 2.12
694 741 1.135112 CACCACGCACAGCATCTAGTA 60.135 52.381 0.00 0.00 0.00 1.82
695 742 0.390340 CACCACGCACAGCATCTAGT 60.390 55.000 0.00 0.00 0.00 2.57
696 743 1.086067 CCACCACGCACAGCATCTAG 61.086 60.000 0.00 0.00 0.00 2.43
697 744 1.079197 CCACCACGCACAGCATCTA 60.079 57.895 0.00 0.00 0.00 1.98
698 745 2.359107 CCACCACGCACAGCATCT 60.359 61.111 0.00 0.00 0.00 2.90
699 746 2.358615 TCCACCACGCACAGCATC 60.359 61.111 0.00 0.00 0.00 3.91
700 747 2.669569 GTCCACCACGCACAGCAT 60.670 61.111 0.00 0.00 0.00 3.79
709 756 1.602377 CTTTGTTCTTCCGTCCACCAC 59.398 52.381 0.00 0.00 0.00 4.16
710 757 1.476110 CCTTTGTTCTTCCGTCCACCA 60.476 52.381 0.00 0.00 0.00 4.17
711 758 1.202722 TCCTTTGTTCTTCCGTCCACC 60.203 52.381 0.00 0.00 0.00 4.61
712 759 2.143925 CTCCTTTGTTCTTCCGTCCAC 58.856 52.381 0.00 0.00 0.00 4.02
713 760 1.071699 CCTCCTTTGTTCTTCCGTCCA 59.928 52.381 0.00 0.00 0.00 4.02
714 761 1.346722 TCCTCCTTTGTTCTTCCGTCC 59.653 52.381 0.00 0.00 0.00 4.79
715 762 2.833631 TCCTCCTTTGTTCTTCCGTC 57.166 50.000 0.00 0.00 0.00 4.79
716 763 2.704065 TCTTCCTCCTTTGTTCTTCCGT 59.296 45.455 0.00 0.00 0.00 4.69
717 764 3.402628 TCTTCCTCCTTTGTTCTTCCG 57.597 47.619 0.00 0.00 0.00 4.30
718 765 4.720046 ACTTCTTCCTCCTTTGTTCTTCC 58.280 43.478 0.00 0.00 0.00 3.46
719 766 5.823045 TCAACTTCTTCCTCCTTTGTTCTTC 59.177 40.000 0.00 0.00 0.00 2.87
720 767 5.590663 GTCAACTTCTTCCTCCTTTGTTCTT 59.409 40.000 0.00 0.00 0.00 2.52
721 768 5.104318 AGTCAACTTCTTCCTCCTTTGTTCT 60.104 40.000 0.00 0.00 0.00 3.01
722 769 5.126779 AGTCAACTTCTTCCTCCTTTGTTC 58.873 41.667 0.00 0.00 0.00 3.18
723 770 5.117406 AGTCAACTTCTTCCTCCTTTGTT 57.883 39.130 0.00 0.00 0.00 2.83
724 771 4.445019 GGAGTCAACTTCTTCCTCCTTTGT 60.445 45.833 0.00 0.00 38.90 2.83
725 772 4.068599 GGAGTCAACTTCTTCCTCCTTTG 58.931 47.826 0.00 0.00 38.90 2.77
726 773 3.244249 CGGAGTCAACTTCTTCCTCCTTT 60.244 47.826 0.00 0.00 39.64 3.11
727 774 2.300437 CGGAGTCAACTTCTTCCTCCTT 59.700 50.000 0.00 0.00 39.64 3.36
728 775 1.896465 CGGAGTCAACTTCTTCCTCCT 59.104 52.381 0.00 0.00 39.64 3.69
729 776 1.619332 ACGGAGTCAACTTCTTCCTCC 59.381 52.381 0.00 0.00 29.74 4.30
744 791 0.388520 TGCGATCACAACAGACGGAG 60.389 55.000 0.00 0.00 0.00 4.63
745 792 0.666274 GTGCGATCACAACAGACGGA 60.666 55.000 0.00 0.00 42.66 4.69
746 793 1.781555 GTGCGATCACAACAGACGG 59.218 57.895 0.00 0.00 42.66 4.79
747 794 1.001745 TCGTGCGATCACAACAGACG 61.002 55.000 0.00 0.00 43.28 4.18
748 795 1.350193 ATCGTGCGATCACAACAGAC 58.650 50.000 0.77 0.00 43.28 3.51
749 796 3.812577 ATCGTGCGATCACAACAGA 57.187 47.368 0.77 0.00 43.28 3.41
758 805 0.952280 ACGGATACTGATCGTGCGAT 59.048 50.000 6.80 6.80 37.59 4.58
759 806 0.306840 GACGGATACTGATCGTGCGA 59.693 55.000 7.80 0.00 32.28 5.10
760 807 0.028902 TGACGGATACTGATCGTGCG 59.971 55.000 0.00 1.09 32.28 5.34
761 808 1.333931 TCTGACGGATACTGATCGTGC 59.666 52.381 0.00 0.00 32.28 5.34
762 809 3.816091 GATCTGACGGATACTGATCGTG 58.184 50.000 0.00 0.00 34.76 4.35
776 823 2.105128 CCAGCCGTCCGATCTGAC 59.895 66.667 7.18 7.18 0.00 3.51
777 824 2.904178 TAGCCAGCCGTCCGATCTGA 62.904 60.000 9.41 0.00 0.00 3.27
778 825 2.413437 CTAGCCAGCCGTCCGATCTG 62.413 65.000 0.00 0.00 0.00 2.90
779 826 2.123854 TAGCCAGCCGTCCGATCT 60.124 61.111 0.00 0.00 0.00 2.75
780 827 2.336809 CTAGCCAGCCGTCCGATC 59.663 66.667 0.00 0.00 0.00 3.69
781 828 3.227276 CCTAGCCAGCCGTCCGAT 61.227 66.667 0.00 0.00 0.00 4.18
788 835 2.682582 ATTAAGCCGCCTAGCCAGCC 62.683 60.000 0.00 0.00 0.00 4.85
789 836 0.819666 AATTAAGCCGCCTAGCCAGC 60.820 55.000 0.00 0.00 0.00 4.85
790 837 1.202698 AGAATTAAGCCGCCTAGCCAG 60.203 52.381 0.00 0.00 0.00 4.85
791 838 0.837272 AGAATTAAGCCGCCTAGCCA 59.163 50.000 0.00 0.00 0.00 4.75
792 839 1.230324 CAGAATTAAGCCGCCTAGCC 58.770 55.000 0.00 0.00 0.00 3.93
793 840 1.202651 TCCAGAATTAAGCCGCCTAGC 60.203 52.381 0.00 0.00 0.00 3.42
794 841 2.872858 GTTCCAGAATTAAGCCGCCTAG 59.127 50.000 0.00 0.00 0.00 3.02
795 842 2.237643 TGTTCCAGAATTAAGCCGCCTA 59.762 45.455 0.00 0.00 0.00 3.93
796 843 1.004277 TGTTCCAGAATTAAGCCGCCT 59.996 47.619 0.00 0.00 0.00 5.52
797 844 1.459450 TGTTCCAGAATTAAGCCGCC 58.541 50.000 0.00 0.00 0.00 6.13
798 845 3.569250 TTTGTTCCAGAATTAAGCCGC 57.431 42.857 0.00 0.00 0.00 6.53
799 846 5.309323 TGATTTGTTCCAGAATTAAGCCG 57.691 39.130 0.00 0.00 0.00 5.52
800 847 6.976925 CAGATGATTTGTTCCAGAATTAAGCC 59.023 38.462 0.00 0.00 0.00 4.35
801 848 6.976925 CCAGATGATTTGTTCCAGAATTAAGC 59.023 38.462 0.00 0.00 0.00 3.09
802 849 6.976925 GCCAGATGATTTGTTCCAGAATTAAG 59.023 38.462 0.00 0.00 0.00 1.85
803 850 6.664816 AGCCAGATGATTTGTTCCAGAATTAA 59.335 34.615 0.00 0.00 0.00 1.40
804 851 6.095860 CAGCCAGATGATTTGTTCCAGAATTA 59.904 38.462 0.00 0.00 0.00 1.40
805 852 5.021458 AGCCAGATGATTTGTTCCAGAATT 58.979 37.500 0.00 0.00 0.00 2.17
806 853 4.401519 CAGCCAGATGATTTGTTCCAGAAT 59.598 41.667 0.00 0.00 0.00 2.40
807 854 3.760151 CAGCCAGATGATTTGTTCCAGAA 59.240 43.478 0.00 0.00 0.00 3.02
808 855 3.009363 TCAGCCAGATGATTTGTTCCAGA 59.991 43.478 0.00 0.00 0.00 3.86
809 856 3.349927 TCAGCCAGATGATTTGTTCCAG 58.650 45.455 0.00 0.00 0.00 3.86
810 857 3.438216 TCAGCCAGATGATTTGTTCCA 57.562 42.857 0.00 0.00 0.00 3.53
811 858 4.996788 AATCAGCCAGATGATTTGTTCC 57.003 40.909 5.34 0.00 45.44 3.62
818 865 2.029623 GCCACAAATCAGCCAGATGAT 58.970 47.619 0.00 0.00 41.72 2.45
819 866 1.272037 TGCCACAAATCAGCCAGATGA 60.272 47.619 0.00 0.00 36.96 2.92
820 867 1.134367 CTGCCACAAATCAGCCAGATG 59.866 52.381 0.00 0.00 36.96 2.90
821 868 1.471119 CTGCCACAAATCAGCCAGAT 58.529 50.000 0.00 0.00 39.09 2.90
822 869 2.951269 CTGCCACAAATCAGCCAGA 58.049 52.632 0.00 0.00 0.00 3.86
827 874 2.180017 GCGGCTGCCACAAATCAG 59.820 61.111 20.29 0.12 33.98 2.90
837 884 1.811645 TTTAGGTTTTGGGCGGCTGC 61.812 55.000 9.72 9.72 41.71 5.25
838 885 0.038618 GTTTAGGTTTTGGGCGGCTG 60.039 55.000 9.56 0.00 0.00 4.85
839 886 0.468400 TGTTTAGGTTTTGGGCGGCT 60.468 50.000 9.56 0.00 0.00 5.52
840 887 0.389757 TTGTTTAGGTTTTGGGCGGC 59.610 50.000 0.00 0.00 0.00 6.53
841 888 2.036604 ACATTGTTTAGGTTTTGGGCGG 59.963 45.455 0.00 0.00 0.00 6.13
842 889 3.378911 ACATTGTTTAGGTTTTGGGCG 57.621 42.857 0.00 0.00 0.00 6.13
843 890 4.509970 GTGAACATTGTTTAGGTTTTGGGC 59.490 41.667 3.08 0.00 0.00 5.36
875 922 1.553248 TGCTACTTGCTATCCACGGTT 59.447 47.619 0.00 0.00 43.37 4.44
969 1017 1.338020 GAAGGAATGGCGGCTTAATGG 59.662 52.381 11.43 0.00 0.00 3.16
982 1040 0.322546 GGCGGTTGGTGAGAAGGAAT 60.323 55.000 0.00 0.00 0.00 3.01
983 1041 1.072505 GGCGGTTGGTGAGAAGGAA 59.927 57.895 0.00 0.00 0.00 3.36
1020 1091 2.106938 GTCCATGGCGCGATCAGA 59.893 61.111 12.10 0.00 0.00 3.27
1260 1356 3.681835 GGACTCAGCACCGTCGGT 61.682 66.667 12.23 12.23 35.62 4.69
1271 1367 1.614051 GGCACATCATTGGTGGACTCA 60.614 52.381 1.31 0.00 36.76 3.41
1283 1379 1.374125 CTTGTCGTCGGGCACATCA 60.374 57.895 0.00 0.00 0.00 3.07
1306 1402 0.962855 GAAGGCCTTGAAGTGGAGCC 60.963 60.000 26.25 0.00 44.20 4.70
1473 1592 3.411446 TGGAATTAGTGCAAGTGTGGAG 58.589 45.455 0.00 0.00 0.00 3.86
1474 1593 3.500448 TGGAATTAGTGCAAGTGTGGA 57.500 42.857 0.00 0.00 0.00 4.02
1475 1594 3.674138 GCATGGAATTAGTGCAAGTGTGG 60.674 47.826 0.00 0.00 38.68 4.17
1476 1595 3.504863 GCATGGAATTAGTGCAAGTGTG 58.495 45.455 0.00 0.00 38.68 3.82
1477 1596 2.493278 GGCATGGAATTAGTGCAAGTGT 59.507 45.455 10.25 0.00 40.53 3.55
1478 1597 2.492881 TGGCATGGAATTAGTGCAAGTG 59.507 45.455 10.25 0.00 40.53 3.16
1479 1598 2.806434 TGGCATGGAATTAGTGCAAGT 58.194 42.857 10.25 0.00 40.53 3.16
1480 1599 3.131577 ACATGGCATGGAATTAGTGCAAG 59.868 43.478 29.49 1.38 40.53 4.01
1483 1602 3.254166 CCTACATGGCATGGAATTAGTGC 59.746 47.826 29.49 1.65 38.12 4.40
1496 1627 6.833416 AGATCTGAGATATACTCCTACATGGC 59.167 42.308 0.00 0.00 44.34 4.40
1567 1701 1.447838 GATCAAAGCAGCGGTCGGA 60.448 57.895 0.00 0.00 0.00 4.55
1604 1738 2.777972 CCCCGTGTTCCGATAGCGA 61.778 63.158 0.00 0.00 40.82 4.93
1608 1742 2.428925 GCTCCCCCGTGTTCCGATA 61.429 63.158 0.00 0.00 39.56 2.92
1609 1743 3.782443 GCTCCCCCGTGTTCCGAT 61.782 66.667 0.00 0.00 39.56 4.18
1612 1746 4.717313 GGTGCTCCCCCGTGTTCC 62.717 72.222 0.00 0.00 0.00 3.62
1641 1778 3.075005 TCAGAGGGCGGGTAGTGC 61.075 66.667 0.00 0.00 0.00 4.40
1645 1782 2.279073 CTCCTCAGAGGGCGGGTA 59.721 66.667 17.10 0.00 35.59 3.69
1653 1791 2.023788 GCTGTCTCCTCCTCCTCAGAG 61.024 61.905 0.00 0.00 40.09 3.35
1655 1793 0.324183 TGCTGTCTCCTCCTCCTCAG 60.324 60.000 0.00 0.00 0.00 3.35
1656 1794 0.613292 GTGCTGTCTCCTCCTCCTCA 60.613 60.000 0.00 0.00 0.00 3.86
1671 1809 1.664321 GGTCATCGTAGACGGGTGCT 61.664 60.000 1.67 0.00 42.51 4.40
1678 1816 1.215655 GCGCCATGGTCATCGTAGAC 61.216 60.000 14.67 2.13 42.51 2.59
1725 1863 4.506654 GCACACTTCTCTTTCGTCAAGTAA 59.493 41.667 0.00 0.00 33.66 2.24
1782 1920 4.698625 AGCGGGAAGGACTCGGGT 62.699 66.667 0.00 0.00 43.48 5.28
1875 2013 0.392863 CTGATCCATTGGTGCCGTCA 60.393 55.000 1.86 0.95 0.00 4.35
1887 2025 2.125391 GCGTGCTCTGCTGATCCA 60.125 61.111 0.00 0.00 0.00 3.41
1941 2080 2.039974 CCAGCGCCACATACAGCAA 61.040 57.895 2.29 0.00 0.00 3.91
1944 2083 2.514592 CCCCAGCGCCACATACAG 60.515 66.667 2.29 0.00 0.00 2.74
1967 2106 4.367023 TCCACACGCAGCGGTACC 62.367 66.667 21.15 0.16 0.00 3.34
2039 2178 4.835615 CCCTAGGTACATAGCTTCATCACT 59.164 45.833 9.07 0.00 35.39 3.41
2040 2179 4.589374 ACCCTAGGTACATAGCTTCATCAC 59.411 45.833 9.07 0.00 32.11 3.06
2106 2245 6.484288 TCTTTGAATGATCTTGGCTTTAGGA 58.516 36.000 0.00 0.00 0.00 2.94
2180 2319 2.358582 TGACTTTTGTGACGGTCGAGTA 59.641 45.455 3.34 0.00 0.00 2.59
2230 2369 1.484227 CTCGACCGTTGTTCGTGCAA 61.484 55.000 0.00 0.00 37.94 4.08
2459 2615 2.233186 GGAAGTAACAGCCCTACGTCTT 59.767 50.000 0.00 0.00 31.08 3.01
2486 2642 2.178912 TTTACGAGTTCAGGCCCTTG 57.821 50.000 0.00 0.00 0.00 3.61
2565 2725 5.227908 CGTGGTTCTAAGTGTGACAGTAAT 58.772 41.667 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.