Multiple sequence alignment - TraesCS5A01G463600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G463600 chr5A 100.000 4307 0 0 1 4307 643620099 643624405 0.000000e+00 7954
1 TraesCS5A01G463600 chr5A 88.103 311 33 4 2 309 427836020 427835711 2.450000e-97 366
2 TraesCS5A01G463600 chr5B 93.945 3749 152 29 578 4307 648138858 648142550 0.000000e+00 5596
3 TraesCS5A01G463600 chr5D 96.360 3269 104 5 1047 4307 515406683 515409944 0.000000e+00 5363
4 TraesCS5A01G463600 chr5D 89.094 596 56 5 375 968 515406071 515406659 0.000000e+00 732
5 TraesCS5A01G463600 chr5D 87.190 242 30 1 2 243 328703510 328703750 1.530000e-69 274
6 TraesCS5A01G463600 chr5D 86.047 129 16 2 243 371 312433666 312433792 2.090000e-28 137
7 TraesCS5A01G463600 chr3D 93.979 382 21 2 1 381 588843478 588843098 1.040000e-160 577
8 TraesCS5A01G463600 chr3B 88.976 381 39 3 1 381 58444722 58444345 6.520000e-128 468
9 TraesCS5A01G463600 chr2B 88.451 381 41 3 1 381 64889831 64890208 1.410000e-124 457
10 TraesCS5A01G463600 chr2B 87.871 371 43 2 1 371 769931449 769931817 6.610000e-118 435
11 TraesCS5A01G463600 chr2A 87.990 383 43 3 1 383 691400470 691400091 2.360000e-122 449
12 TraesCS5A01G463600 chr7A 87.047 386 47 3 1 386 543362259 543361877 2.380000e-117 433
13 TraesCS5A01G463600 chr4A 86.877 381 48 2 1 381 601201309 601201687 3.980000e-115 425
14 TraesCS5A01G463600 chr6B 76.939 490 94 10 1125 1613 497054 496583 1.190000e-65 261
15 TraesCS5A01G463600 chr7D 77.193 342 59 16 383 716 94941513 94941183 9.510000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G463600 chr5A 643620099 643624405 4306 False 7954.0 7954 100.000 1 4307 1 chr5A.!!$F1 4306
1 TraesCS5A01G463600 chr5B 648138858 648142550 3692 False 5596.0 5596 93.945 578 4307 1 chr5B.!!$F1 3729
2 TraesCS5A01G463600 chr5D 515406071 515409944 3873 False 3047.5 5363 92.727 375 4307 2 chr5D.!!$F3 3932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.028637 GCTTTTAGGCATGCGAGCTC 59.971 55.0 12.44 2.73 34.17 4.09 F
158 159 0.034089 GCCAAGATGGTGGGCTACTT 60.034 55.0 0.00 0.00 44.32 2.24 F
237 238 0.321475 AGAGAGAGCAACAAGGCTGC 60.321 55.0 0.00 0.00 45.99 5.25 F
1947 1966 0.039978 TGGTTAACATTGGCGCAACG 60.040 50.0 10.83 0.00 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 1873 0.856641 TTTTGAAGACGCCGTTCTCG 59.143 50.000 0.00 0.0 0.00 4.04 R
1926 1945 1.032794 TTGCGCCAATGTTAACCACA 58.967 45.000 4.18 0.0 40.71 4.17 R
1980 1999 1.069765 ACTGACACCTGCTTCACCG 59.930 57.895 0.00 0.0 0.00 4.94 R
3428 3448 0.532573 TAGCCTTCGCAGTCTCCTTG 59.467 55.000 0.00 0.0 37.52 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.857217 AGTGATGCTGAAGAGGCTG 57.143 52.632 0.00 0.00 0.00 4.85
20 21 1.273759 AGTGATGCTGAAGAGGCTGA 58.726 50.000 0.00 0.00 0.00 4.26
21 22 1.627329 AGTGATGCTGAAGAGGCTGAA 59.373 47.619 0.00 0.00 0.00 3.02
22 23 2.008329 GTGATGCTGAAGAGGCTGAAG 58.992 52.381 0.00 0.00 0.00 3.02
23 24 1.065636 TGATGCTGAAGAGGCTGAAGG 60.066 52.381 0.00 0.00 0.00 3.46
24 25 0.255318 ATGCTGAAGAGGCTGAAGGG 59.745 55.000 0.00 0.00 0.00 3.95
25 26 1.748500 GCTGAAGAGGCTGAAGGGC 60.749 63.158 0.00 0.00 41.20 5.19
26 27 1.681666 CTGAAGAGGCTGAAGGGCA 59.318 57.895 0.00 0.00 43.56 5.36
28 29 1.077858 GAAGAGGCTGAAGGGCAGG 60.078 63.158 0.00 0.00 45.03 4.85
33 34 3.207669 GCTGAAGGGCAGGCGATG 61.208 66.667 0.00 0.00 45.03 3.84
43 44 2.481212 CAGGCGATGCTTTTAGGCA 58.519 52.632 0.00 0.00 46.63 4.75
50 51 1.802636 TGCTTTTAGGCATGCGAGC 59.197 52.632 12.44 15.08 37.29 5.03
51 52 0.677731 TGCTTTTAGGCATGCGAGCT 60.678 50.000 21.00 12.96 37.29 4.09
52 53 0.028637 GCTTTTAGGCATGCGAGCTC 59.971 55.000 12.44 2.73 34.17 4.09
53 54 1.661341 CTTTTAGGCATGCGAGCTCT 58.339 50.000 12.44 5.07 34.17 4.09
54 55 1.329906 CTTTTAGGCATGCGAGCTCTG 59.670 52.381 12.44 4.51 34.17 3.35
55 56 0.462581 TTTAGGCATGCGAGCTCTGG 60.463 55.000 12.44 0.00 34.17 3.86
56 57 1.329913 TTAGGCATGCGAGCTCTGGA 61.330 55.000 12.44 7.19 34.17 3.86
57 58 1.329913 TAGGCATGCGAGCTCTGGAA 61.330 55.000 12.44 0.00 34.17 3.53
58 59 1.746615 GGCATGCGAGCTCTGGAAA 60.747 57.895 12.44 0.00 34.17 3.13
59 60 1.308069 GGCATGCGAGCTCTGGAAAA 61.308 55.000 12.44 0.00 34.17 2.29
60 61 0.523072 GCATGCGAGCTCTGGAAAAA 59.477 50.000 12.85 0.00 0.00 1.94
82 83 7.884816 AAAAGTATATATTGGTCCGACGATG 57.115 36.000 0.00 0.00 0.00 3.84
83 84 6.585695 AAGTATATATTGGTCCGACGATGT 57.414 37.500 0.00 0.00 0.00 3.06
84 85 6.585695 AGTATATATTGGTCCGACGATGTT 57.414 37.500 0.00 0.00 0.00 2.71
85 86 6.618811 AGTATATATTGGTCCGACGATGTTC 58.381 40.000 0.00 0.00 0.00 3.18
86 87 2.197792 TATTGGTCCGACGATGTTCG 57.802 50.000 0.00 0.00 46.93 3.95
87 88 0.528924 ATTGGTCCGACGATGTTCGA 59.471 50.000 3.62 0.00 43.74 3.71
88 89 0.109458 TTGGTCCGACGATGTTCGAG 60.109 55.000 3.62 0.00 43.74 4.04
89 90 0.956902 TGGTCCGACGATGTTCGAGA 60.957 55.000 3.62 0.00 43.74 4.04
90 91 0.522915 GGTCCGACGATGTTCGAGAC 60.523 60.000 3.62 7.27 43.74 3.36
91 92 0.167470 GTCCGACGATGTTCGAGACA 59.833 55.000 3.62 3.49 43.74 3.41
92 93 0.446616 TCCGACGATGTTCGAGACAG 59.553 55.000 3.62 0.00 43.74 3.51
93 94 0.446616 CCGACGATGTTCGAGACAGA 59.553 55.000 3.62 0.00 43.74 3.41
94 95 1.525596 CGACGATGTTCGAGACAGAC 58.474 55.000 3.62 0.00 43.74 3.51
95 96 1.128878 CGACGATGTTCGAGACAGACT 59.871 52.381 3.62 0.00 43.74 3.24
96 97 2.347755 CGACGATGTTCGAGACAGACTA 59.652 50.000 3.62 0.00 43.74 2.59
97 98 3.672310 GACGATGTTCGAGACAGACTAC 58.328 50.000 3.62 0.00 43.74 2.73
98 99 2.093941 ACGATGTTCGAGACAGACTACG 59.906 50.000 3.62 0.00 43.74 3.51
99 100 2.442424 GATGTTCGAGACAGACTACGC 58.558 52.381 6.59 0.00 42.62 4.42
100 101 1.232119 TGTTCGAGACAGACTACGCA 58.768 50.000 0.00 0.00 33.40 5.24
101 102 1.197036 TGTTCGAGACAGACTACGCAG 59.803 52.381 0.00 0.00 33.40 5.18
102 103 0.168348 TTCGAGACAGACTACGCAGC 59.832 55.000 0.00 0.00 0.00 5.25
103 104 0.673956 TCGAGACAGACTACGCAGCT 60.674 55.000 0.00 0.00 0.00 4.24
104 105 0.522286 CGAGACAGACTACGCAGCTG 60.522 60.000 10.11 10.11 34.23 4.24
105 106 0.523966 GAGACAGACTACGCAGCTGT 59.476 55.000 16.64 11.08 39.95 4.40
106 107 0.242286 AGACAGACTACGCAGCTGTG 59.758 55.000 25.37 25.37 38.46 3.66
107 108 0.241213 GACAGACTACGCAGCTGTGA 59.759 55.000 32.90 15.51 38.46 3.58
108 109 0.891373 ACAGACTACGCAGCTGTGAT 59.109 50.000 32.90 18.84 37.59 3.06
109 110 1.273606 ACAGACTACGCAGCTGTGATT 59.726 47.619 32.90 14.69 37.59 2.57
110 111 1.657594 CAGACTACGCAGCTGTGATTG 59.342 52.381 32.90 21.81 0.00 2.67
111 112 1.546029 AGACTACGCAGCTGTGATTGA 59.454 47.619 32.90 13.77 0.00 2.57
112 113 1.923204 GACTACGCAGCTGTGATTGAG 59.077 52.381 32.90 22.90 0.00 3.02
113 114 1.284657 CTACGCAGCTGTGATTGAGG 58.715 55.000 32.90 11.75 0.00 3.86
114 115 0.740868 TACGCAGCTGTGATTGAGGC 60.741 55.000 32.90 5.48 0.00 4.70
115 116 2.758089 CGCAGCTGTGATTGAGGCC 61.758 63.158 22.94 0.00 0.00 5.19
116 117 2.413142 GCAGCTGTGATTGAGGCCC 61.413 63.158 16.64 0.00 0.00 5.80
117 118 1.302285 CAGCTGTGATTGAGGCCCT 59.698 57.895 5.25 0.00 0.00 5.19
118 119 0.747283 CAGCTGTGATTGAGGCCCTC 60.747 60.000 2.98 2.98 0.00 4.30
119 120 1.203441 AGCTGTGATTGAGGCCCTCA 61.203 55.000 10.05 10.05 38.87 3.86
126 127 3.453916 TTGAGGCCCTCAATGCAAA 57.546 47.368 22.25 0.00 44.27 3.68
127 128 1.941377 TTGAGGCCCTCAATGCAAAT 58.059 45.000 22.25 0.00 44.27 2.32
128 129 1.941377 TGAGGCCCTCAATGCAAATT 58.059 45.000 12.03 0.00 37.57 1.82
129 130 1.826720 TGAGGCCCTCAATGCAAATTC 59.173 47.619 12.03 0.00 37.57 2.17
130 131 2.105766 GAGGCCCTCAATGCAAATTCT 58.894 47.619 5.69 0.00 0.00 2.40
131 132 1.829222 AGGCCCTCAATGCAAATTCTG 59.171 47.619 0.00 0.00 0.00 3.02
132 133 1.551883 GGCCCTCAATGCAAATTCTGT 59.448 47.619 0.00 0.00 0.00 3.41
133 134 2.613691 GCCCTCAATGCAAATTCTGTG 58.386 47.619 0.00 0.00 0.00 3.66
134 135 2.231964 GCCCTCAATGCAAATTCTGTGA 59.768 45.455 0.00 0.00 0.00 3.58
135 136 3.118884 GCCCTCAATGCAAATTCTGTGAT 60.119 43.478 0.00 0.00 0.00 3.06
136 137 4.679662 CCCTCAATGCAAATTCTGTGATC 58.320 43.478 0.00 0.00 0.00 2.92
137 138 4.441079 CCCTCAATGCAAATTCTGTGATCC 60.441 45.833 0.00 0.00 0.00 3.36
138 139 4.401519 CCTCAATGCAAATTCTGTGATCCT 59.598 41.667 0.00 0.00 0.00 3.24
139 140 5.319140 TCAATGCAAATTCTGTGATCCTG 57.681 39.130 0.00 0.00 0.00 3.86
140 141 3.795623 ATGCAAATTCTGTGATCCTGC 57.204 42.857 0.00 0.00 0.00 4.85
141 142 1.820519 TGCAAATTCTGTGATCCTGCC 59.179 47.619 0.00 0.00 0.00 4.85
142 143 1.820519 GCAAATTCTGTGATCCTGCCA 59.179 47.619 0.00 0.00 0.00 4.92
143 144 2.231964 GCAAATTCTGTGATCCTGCCAA 59.768 45.455 0.00 0.00 0.00 4.52
144 145 3.675228 GCAAATTCTGTGATCCTGCCAAG 60.675 47.826 0.00 0.00 0.00 3.61
145 146 3.726557 AATTCTGTGATCCTGCCAAGA 57.273 42.857 0.00 0.00 0.00 3.02
146 147 3.947612 ATTCTGTGATCCTGCCAAGAT 57.052 42.857 0.00 0.00 0.00 2.40
147 148 2.704464 TCTGTGATCCTGCCAAGATG 57.296 50.000 0.00 0.00 0.00 2.90
148 149 1.211212 TCTGTGATCCTGCCAAGATGG 59.789 52.381 0.00 0.00 41.55 3.51
149 150 0.994247 TGTGATCCTGCCAAGATGGT 59.006 50.000 0.00 0.00 40.46 3.55
150 151 1.340308 TGTGATCCTGCCAAGATGGTG 60.340 52.381 0.00 0.00 40.46 4.17
151 152 0.256752 TGATCCTGCCAAGATGGTGG 59.743 55.000 0.00 1.81 40.46 4.61
152 153 0.466922 GATCCTGCCAAGATGGTGGG 60.467 60.000 9.51 6.95 40.46 4.61
156 157 4.242602 GCCAAGATGGTGGGCTAC 57.757 61.111 0.00 0.00 44.32 3.58
157 158 1.609783 GCCAAGATGGTGGGCTACT 59.390 57.895 0.00 0.00 44.32 2.57
158 159 0.034089 GCCAAGATGGTGGGCTACTT 60.034 55.000 0.00 0.00 44.32 2.24
159 160 1.211949 GCCAAGATGGTGGGCTACTTA 59.788 52.381 0.00 0.00 44.32 2.24
160 161 2.919228 CCAAGATGGTGGGCTACTTAC 58.081 52.381 0.00 0.00 34.77 2.34
161 162 2.238646 CCAAGATGGTGGGCTACTTACA 59.761 50.000 0.00 0.00 34.77 2.41
162 163 3.308117 CCAAGATGGTGGGCTACTTACAA 60.308 47.826 0.00 0.00 34.77 2.41
163 164 3.629142 AGATGGTGGGCTACTTACAAC 57.371 47.619 0.00 0.00 0.00 3.32
164 165 2.093658 AGATGGTGGGCTACTTACAACG 60.094 50.000 0.00 0.00 0.00 4.10
165 166 1.340088 TGGTGGGCTACTTACAACGA 58.660 50.000 0.00 0.00 0.00 3.85
166 167 1.903860 TGGTGGGCTACTTACAACGAT 59.096 47.619 0.00 0.00 0.00 3.73
167 168 2.303600 TGGTGGGCTACTTACAACGATT 59.696 45.455 0.00 0.00 0.00 3.34
168 169 2.934553 GGTGGGCTACTTACAACGATTC 59.065 50.000 0.00 0.00 0.00 2.52
169 170 2.601763 GTGGGCTACTTACAACGATTCG 59.398 50.000 4.14 4.14 0.00 3.34
170 171 2.231964 TGGGCTACTTACAACGATTCGT 59.768 45.455 5.75 5.75 43.97 3.85
180 181 3.606886 ACGATTCGTTGGACTTGCT 57.393 47.368 5.75 0.00 36.35 3.91
181 182 1.148310 ACGATTCGTTGGACTTGCTG 58.852 50.000 5.75 0.00 36.35 4.41
182 183 1.270094 ACGATTCGTTGGACTTGCTGA 60.270 47.619 5.75 0.00 36.35 4.26
183 184 1.798223 CGATTCGTTGGACTTGCTGAA 59.202 47.619 0.00 0.00 0.00 3.02
184 185 2.159787 CGATTCGTTGGACTTGCTGAAG 60.160 50.000 0.00 0.00 35.07 3.02
185 186 2.613026 TTCGTTGGACTTGCTGAAGA 57.387 45.000 0.00 0.00 32.98 2.87
186 187 2.613026 TCGTTGGACTTGCTGAAGAA 57.387 45.000 0.00 0.00 32.98 2.52
187 188 3.126001 TCGTTGGACTTGCTGAAGAAT 57.874 42.857 0.00 0.00 32.98 2.40
188 189 3.476552 TCGTTGGACTTGCTGAAGAATT 58.523 40.909 0.00 0.00 32.98 2.17
208 209 9.745018 AAGAATTCTCCATCTTGAAGAATAACA 57.255 29.630 8.78 0.00 34.70 2.41
209 210 9.745018 AGAATTCTCCATCTTGAAGAATAACAA 57.255 29.630 0.88 0.00 0.00 2.83
212 213 9.745018 ATTCTCCATCTTGAAGAATAACAAAGA 57.255 29.630 0.00 0.00 0.00 2.52
213 214 9.745018 TTCTCCATCTTGAAGAATAACAAAGAT 57.255 29.630 0.00 0.00 0.00 2.40
214 215 9.745018 TCTCCATCTTGAAGAATAACAAAGATT 57.255 29.630 0.00 0.00 0.00 2.40
215 216 9.784680 CTCCATCTTGAAGAATAACAAAGATTG 57.215 33.333 0.00 0.00 0.00 2.67
216 217 8.742777 TCCATCTTGAAGAATAACAAAGATTGG 58.257 33.333 0.00 0.00 34.12 3.16
217 218 8.742777 CCATCTTGAAGAATAACAAAGATTGGA 58.257 33.333 0.00 0.00 34.12 3.53
220 221 9.573166 TCTTGAAGAATAACAAAGATTGGAAGA 57.427 29.630 0.00 0.00 34.12 2.87
221 222 9.837525 CTTGAAGAATAACAAAGATTGGAAGAG 57.162 33.333 0.00 0.00 34.12 2.85
222 223 9.573166 TTGAAGAATAACAAAGATTGGAAGAGA 57.427 29.630 0.00 0.00 34.12 3.10
223 224 9.224267 TGAAGAATAACAAAGATTGGAAGAGAG 57.776 33.333 0.00 0.00 34.12 3.20
224 225 9.442047 GAAGAATAACAAAGATTGGAAGAGAGA 57.558 33.333 0.00 0.00 34.12 3.10
225 226 9.447157 AAGAATAACAAAGATTGGAAGAGAGAG 57.553 33.333 0.00 0.00 34.12 3.20
226 227 7.552330 AGAATAACAAAGATTGGAAGAGAGAGC 59.448 37.037 0.00 0.00 34.12 4.09
227 228 4.630644 ACAAAGATTGGAAGAGAGAGCA 57.369 40.909 0.00 0.00 34.12 4.26
228 229 4.978099 ACAAAGATTGGAAGAGAGAGCAA 58.022 39.130 0.00 0.00 34.12 3.91
229 230 4.759183 ACAAAGATTGGAAGAGAGAGCAAC 59.241 41.667 0.00 0.00 34.12 4.17
230 231 4.630644 AAGATTGGAAGAGAGAGCAACA 57.369 40.909 0.00 0.00 0.00 3.33
231 232 4.630644 AGATTGGAAGAGAGAGCAACAA 57.369 40.909 0.00 0.00 0.00 2.83
232 233 4.577875 AGATTGGAAGAGAGAGCAACAAG 58.422 43.478 0.00 0.00 0.00 3.16
233 234 2.847327 TGGAAGAGAGAGCAACAAGG 57.153 50.000 0.00 0.00 0.00 3.61
234 235 1.271054 TGGAAGAGAGAGCAACAAGGC 60.271 52.381 0.00 0.00 0.00 4.35
236 237 2.075338 GAAGAGAGAGCAACAAGGCTG 58.925 52.381 0.00 0.00 45.99 4.85
237 238 0.321475 AGAGAGAGCAACAAGGCTGC 60.321 55.000 0.00 0.00 45.99 5.25
245 246 2.599659 GCAACAAGGCTGCTCATAAAC 58.400 47.619 0.00 0.00 36.84 2.01
246 247 2.229784 GCAACAAGGCTGCTCATAAACT 59.770 45.455 0.00 0.00 36.84 2.66
247 248 3.305608 GCAACAAGGCTGCTCATAAACTT 60.306 43.478 0.00 0.00 36.84 2.66
248 249 4.232221 CAACAAGGCTGCTCATAAACTTG 58.768 43.478 0.00 5.37 40.66 3.16
249 250 2.229784 ACAAGGCTGCTCATAAACTTGC 59.770 45.455 10.93 0.00 38.99 4.01
250 251 2.490903 CAAGGCTGCTCATAAACTTGCT 59.509 45.455 0.00 0.00 0.00 3.91
251 252 2.089980 AGGCTGCTCATAAACTTGCTG 58.910 47.619 0.00 0.00 0.00 4.41
252 253 1.468736 GGCTGCTCATAAACTTGCTGC 60.469 52.381 0.00 0.00 45.28 5.25
253 254 1.471684 GCTGCTCATAAACTTGCTGCT 59.528 47.619 0.00 0.00 43.59 4.24
254 255 2.094854 GCTGCTCATAAACTTGCTGCTT 60.095 45.455 0.00 0.00 43.59 3.91
255 256 3.127548 GCTGCTCATAAACTTGCTGCTTA 59.872 43.478 0.00 0.00 43.59 3.09
256 257 4.201990 GCTGCTCATAAACTTGCTGCTTAT 60.202 41.667 0.00 0.00 43.59 1.73
257 258 5.239359 TGCTCATAAACTTGCTGCTTATG 57.761 39.130 11.16 11.16 36.54 1.90
258 259 4.096833 TGCTCATAAACTTGCTGCTTATGG 59.903 41.667 15.19 9.64 36.12 2.74
259 260 4.096984 GCTCATAAACTTGCTGCTTATGGT 59.903 41.667 15.19 0.52 36.12 3.55
260 261 5.296780 GCTCATAAACTTGCTGCTTATGGTA 59.703 40.000 15.19 2.09 36.12 3.25
261 262 6.512415 GCTCATAAACTTGCTGCTTATGGTAG 60.512 42.308 15.19 9.78 36.12 3.18
262 263 6.649155 TCATAAACTTGCTGCTTATGGTAGA 58.351 36.000 15.19 0.00 36.12 2.59
263 264 6.763135 TCATAAACTTGCTGCTTATGGTAGAG 59.237 38.462 15.19 0.00 36.12 2.43
264 265 2.911484 ACTTGCTGCTTATGGTAGAGC 58.089 47.619 0.00 0.00 39.33 4.09
265 266 2.503356 ACTTGCTGCTTATGGTAGAGCT 59.497 45.455 0.00 0.00 39.60 4.09
266 267 3.706594 ACTTGCTGCTTATGGTAGAGCTA 59.293 43.478 0.00 0.00 39.60 3.32
267 268 4.162320 ACTTGCTGCTTATGGTAGAGCTAA 59.838 41.667 0.00 0.00 39.60 3.09
268 269 4.963318 TGCTGCTTATGGTAGAGCTAAT 57.037 40.909 0.00 0.00 39.60 1.73
269 270 4.635223 TGCTGCTTATGGTAGAGCTAATG 58.365 43.478 0.00 0.00 39.60 1.90
270 271 3.999663 GCTGCTTATGGTAGAGCTAATGG 59.000 47.826 0.00 0.00 39.60 3.16
271 272 3.999663 CTGCTTATGGTAGAGCTAATGGC 59.000 47.826 0.00 0.00 39.60 4.40
272 273 3.390967 TGCTTATGGTAGAGCTAATGGCA 59.609 43.478 0.00 0.00 44.79 4.92
273 274 3.999663 GCTTATGGTAGAGCTAATGGCAG 59.000 47.826 0.00 0.00 44.79 4.85
274 275 4.503991 GCTTATGGTAGAGCTAATGGCAGT 60.504 45.833 0.00 0.00 44.79 4.40
275 276 5.615289 CTTATGGTAGAGCTAATGGCAGTT 58.385 41.667 0.00 0.00 44.79 3.16
276 277 4.510167 ATGGTAGAGCTAATGGCAGTTT 57.490 40.909 0.00 0.00 44.79 2.66
277 278 4.301072 TGGTAGAGCTAATGGCAGTTTT 57.699 40.909 0.00 0.00 44.79 2.43
278 279 4.662278 TGGTAGAGCTAATGGCAGTTTTT 58.338 39.130 0.00 0.00 44.79 1.94
294 295 3.548793 TTTTTGTGATGGGCAGGGT 57.451 47.368 0.00 0.00 0.00 4.34
295 296 1.047002 TTTTTGTGATGGGCAGGGTG 58.953 50.000 0.00 0.00 0.00 4.61
296 297 1.470996 TTTTGTGATGGGCAGGGTGC 61.471 55.000 0.00 0.00 44.08 5.01
310 311 5.485209 GCAGGGTGCCTTATAGTATAACT 57.515 43.478 0.00 0.00 37.42 2.24
311 312 5.238583 GCAGGGTGCCTTATAGTATAACTG 58.761 45.833 9.82 9.82 37.42 3.16
312 313 5.011738 GCAGGGTGCCTTATAGTATAACTGA 59.988 44.000 15.16 0.00 37.42 3.41
313 314 6.295916 GCAGGGTGCCTTATAGTATAACTGAT 60.296 42.308 15.16 0.00 37.42 2.90
314 315 7.099764 CAGGGTGCCTTATAGTATAACTGATG 58.900 42.308 9.00 0.00 0.00 3.07
315 316 6.787957 AGGGTGCCTTATAGTATAACTGATGT 59.212 38.462 0.00 0.00 0.00 3.06
316 317 7.954056 AGGGTGCCTTATAGTATAACTGATGTA 59.046 37.037 0.00 0.00 0.00 2.29
317 318 8.591072 GGGTGCCTTATAGTATAACTGATGTAA 58.409 37.037 0.00 0.00 0.00 2.41
331 332 9.950496 ATAACTGATGTAATCTTGAAAGACAGT 57.050 29.630 0.00 0.00 45.81 3.55
333 334 8.764524 ACTGATGTAATCTTGAAAGACAGTAC 57.235 34.615 8.97 6.67 45.81 2.73
334 335 8.589338 ACTGATGTAATCTTGAAAGACAGTACT 58.411 33.333 8.97 0.00 45.81 2.73
335 336 8.988064 TGATGTAATCTTGAAAGACAGTACTC 57.012 34.615 0.00 0.00 45.81 2.59
336 337 8.807118 TGATGTAATCTTGAAAGACAGTACTCT 58.193 33.333 0.00 0.00 45.81 3.24
337 338 8.994429 ATGTAATCTTGAAAGACAGTACTCTG 57.006 34.615 0.00 0.00 46.18 3.35
338 339 7.378966 TGTAATCTTGAAAGACAGTACTCTGG 58.621 38.462 0.00 0.00 45.14 3.86
339 340 4.873746 TCTTGAAAGACAGTACTCTGGG 57.126 45.455 0.00 0.00 45.14 4.45
340 341 4.223953 TCTTGAAAGACAGTACTCTGGGT 58.776 43.478 0.00 0.00 45.14 4.51
341 342 5.391256 TCTTGAAAGACAGTACTCTGGGTA 58.609 41.667 0.00 0.00 45.14 3.69
342 343 6.071278 ATCTTGAAAGACAGTACTCTGGGTAC 60.071 42.308 9.85 9.85 45.14 3.34
343 344 8.401784 ATCTTGAAAGACAGTACTCTGGGTACA 61.402 40.741 19.32 0.00 43.97 2.90
433 434 4.818546 GCATGACCACAAGCTTACATATCT 59.181 41.667 0.00 0.00 37.68 1.98
437 438 6.573434 TGACCACAAGCTTACATATCTAGTG 58.427 40.000 0.00 0.00 0.00 2.74
490 491 7.500992 AGTGTATTCGTCTCAATGGTATCATT 58.499 34.615 0.00 0.00 43.79 2.57
510 511 6.475504 TCATTGGAGTCTGCTTTCATTCTAA 58.524 36.000 0.00 0.00 0.00 2.10
511 512 7.114754 TCATTGGAGTCTGCTTTCATTCTAAT 58.885 34.615 0.00 0.00 0.00 1.73
550 551 4.382470 CGAGAGAGGAACCAATCTCACAAT 60.382 45.833 18.44 0.33 43.64 2.71
552 553 6.627087 AGAGAGGAACCAATCTCACAATTA 57.373 37.500 11.04 0.00 43.64 1.40
586 587 5.882000 TGACACTAATGACCATGAAAGATGG 59.118 40.000 0.00 0.00 44.54 3.51
588 589 5.044919 ACACTAATGACCATGAAAGATGGGA 60.045 40.000 5.70 0.00 43.32 4.37
601 602 2.551270 AGATGGGAAACTAGCCAGACA 58.449 47.619 0.00 0.00 0.00 3.41
625 626 0.881118 GCCCAACACACCACACATAG 59.119 55.000 0.00 0.00 0.00 2.23
642 643 5.306419 ACACATAGCACAGATCTACATCCAT 59.694 40.000 0.00 0.00 0.00 3.41
647 648 4.408270 AGCACAGATCTACATCCATGTTCT 59.592 41.667 0.00 0.00 41.97 3.01
675 676 8.854614 AATCTTTAGCTAGACAATGAACAACT 57.145 30.769 0.00 0.00 0.00 3.16
683 684 7.978975 AGCTAGACAATGAACAACTAGAAGATC 59.021 37.037 0.00 0.00 34.36 2.75
767 769 6.713731 TTCAAGGGGAGTTTTACCTAGAAT 57.286 37.500 0.00 0.00 33.37 2.40
946 949 2.056985 GGCTGAAATGGCCCACAAA 58.943 52.632 0.00 0.00 43.49 2.83
949 952 0.971386 CTGAAATGGCCCACAAAGCT 59.029 50.000 0.00 0.00 0.00 3.74
961 964 3.460103 CCACAAAGCTGAAAAGCAACAT 58.540 40.909 0.00 0.00 37.25 2.71
962 965 3.246699 CCACAAAGCTGAAAAGCAACATG 59.753 43.478 0.00 0.00 37.25 3.21
969 972 2.505635 GAAAAGCAACATGGGCCGGG 62.506 60.000 2.18 0.00 0.00 5.73
1045 1049 2.652941 CGCAGCCCATTTACAAATGT 57.347 45.000 12.42 0.00 43.24 2.71
1498 1517 2.685380 CTTCTCCTCCCCTGGCGT 60.685 66.667 0.00 0.00 0.00 5.68
1750 1769 1.690633 CTCAGGGAGCAGGGCCTTA 60.691 63.158 1.32 0.00 0.00 2.69
1842 1861 3.959991 GAAGGTCCGTGAGCTGGCC 62.960 68.421 0.00 0.00 39.62 5.36
1845 1864 4.148825 GTCCGTGAGCTGGCCGAT 62.149 66.667 0.00 0.00 0.00 4.18
1854 1873 1.526225 GCTGGCCGATAAGGAACCC 60.526 63.158 0.00 0.00 45.00 4.11
1926 1945 1.555075 ACCATACTCATCGGCACAACT 59.445 47.619 0.00 0.00 0.00 3.16
1944 1963 0.595588 CTGTGGTTAACATTGGCGCA 59.404 50.000 10.83 1.67 38.39 6.09
1947 1966 0.039978 TGGTTAACATTGGCGCAACG 60.040 50.000 10.83 0.00 0.00 4.10
1959 1978 1.282570 CGCAACGGCAATTGTCACT 59.717 52.632 11.22 0.00 41.24 3.41
1965 1984 1.503542 GGCAATTGTCACTGAGGCG 59.496 57.895 4.85 0.00 0.00 5.52
1980 1999 2.126346 GCGGCCACAGCAATGTTC 60.126 61.111 2.24 0.00 42.56 3.18
2031 2050 1.135489 GTCATGACTGTCGCCGTTCTA 60.135 52.381 18.83 0.00 0.00 2.10
2052 2071 7.540474 TCTACTTCTTACAGAAATCACACCT 57.460 36.000 0.00 0.00 33.19 4.00
2133 2152 4.439289 GCTTGGCTTTCAATCATCCTGTAC 60.439 45.833 0.00 0.00 34.45 2.90
2190 2209 5.441500 GGAATTCTAAAGCTTCTAGGCCTT 58.558 41.667 12.58 0.00 0.00 4.35
2220 2239 4.223700 AGAAGTGAGCCATATGTGACTGAA 59.776 41.667 1.24 0.00 0.00 3.02
2325 2344 5.805486 GCTCGAGATTAAAGACACACATGTA 59.195 40.000 18.75 0.00 39.95 2.29
2538 2557 4.583871 AGGACATCACTGTGAAGGAAATC 58.416 43.478 15.31 3.92 35.14 2.17
3051 3070 4.026356 AGCTAATGCAAGAAAGGTCAGT 57.974 40.909 0.00 0.00 42.74 3.41
3186 3205 1.202973 CCGACAGCGATGATGACGAC 61.203 60.000 8.12 0.00 39.07 4.34
3216 3235 6.096846 GCCCTGATATAACAGAAAATGGTTGT 59.903 38.462 11.35 0.00 39.94 3.32
3393 3413 5.063880 CCGAAGAAGAGAAAAGAGGGAAAA 58.936 41.667 0.00 0.00 0.00 2.29
3428 3448 2.032290 GGAAAACAGCGACAGTAACACC 60.032 50.000 0.00 0.00 0.00 4.16
3429 3449 2.319136 AAACAGCGACAGTAACACCA 57.681 45.000 0.00 0.00 0.00 4.17
3473 3493 7.676947 ACAGCTTAGGACAACATTTCTAGTAA 58.323 34.615 0.00 0.00 0.00 2.24
3476 3496 8.322091 AGCTTAGGACAACATTTCTAGTAACAT 58.678 33.333 0.00 0.00 0.00 2.71
3498 3518 7.942990 ACATTAGTAGTAATCTAGAGGTGCAC 58.057 38.462 8.80 8.80 0.00 4.57
3520 3540 2.079925 GAGGTGTCAGGCATCAACTTC 58.920 52.381 0.00 0.00 31.32 3.01
3604 3624 3.123050 GTTTTGCATTCCGAAGCAGTTT 58.877 40.909 0.00 0.00 42.39 2.66
3617 3637 1.067916 CAGTTTTGGTGGCTGGCAC 59.932 57.895 24.50 24.50 0.00 5.01
3621 3641 2.902423 TTTTGGTGGCTGGCACGACT 62.902 55.000 25.26 0.00 0.00 4.18
3632 3652 1.367840 GCACGACTGGACAGAAGGT 59.632 57.895 6.29 0.00 0.00 3.50
3642 3662 1.134560 GGACAGAAGGTAGTAGTGCCG 59.865 57.143 0.00 0.00 32.57 5.69
3750 3770 2.126031 GAGTGAAGTCGGGTCCGC 60.126 66.667 4.27 0.34 39.59 5.54
3775 3796 1.933853 GCGAGTATGTGGTAAAGCCTG 59.066 52.381 0.00 0.00 38.35 4.85
3782 3803 0.984995 GTGGTAAAGCCTGACCTCCT 59.015 55.000 0.00 0.00 36.62 3.69
3821 3842 1.968540 AGCTCGCTGAACCTTTGCC 60.969 57.895 0.00 0.00 0.00 4.52
3850 3871 1.863267 CGATGGAGGAGAACATCAGC 58.137 55.000 0.00 0.00 42.72 4.26
4025 4046 5.335191 GGGAAGAGCATTGTGAGTACTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
4031 4052 6.062095 AGCATTGTGAGTACTTTTGTAACCT 58.938 36.000 0.00 0.00 36.56 3.50
4155 4182 5.691896 ACTGTTATAGGTGGGGATTTTAGC 58.308 41.667 0.00 0.00 0.00 3.09
4281 4308 6.952358 ACTTATCTGGTAGACAGTTTACCTGA 59.048 38.462 23.95 23.95 46.42 3.86
4302 4329 5.057149 TGAGCTAACAACCAGAGAAACTTC 58.943 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.008329 CTTCAGCCTCTTCAGCATCAC 58.992 52.381 0.00 0.00 0.00 3.06
3 4 1.065636 CCTTCAGCCTCTTCAGCATCA 60.066 52.381 0.00 0.00 0.00 3.07
4 5 1.666054 CCTTCAGCCTCTTCAGCATC 58.334 55.000 0.00 0.00 0.00 3.91
5 6 0.255318 CCCTTCAGCCTCTTCAGCAT 59.745 55.000 0.00 0.00 0.00 3.79
6 7 1.681666 CCCTTCAGCCTCTTCAGCA 59.318 57.895 0.00 0.00 0.00 4.41
7 8 1.748500 GCCCTTCAGCCTCTTCAGC 60.749 63.158 0.00 0.00 0.00 4.26
8 9 0.392729 CTGCCCTTCAGCCTCTTCAG 60.393 60.000 0.00 0.00 35.78 3.02
9 10 1.681666 CTGCCCTTCAGCCTCTTCA 59.318 57.895 0.00 0.00 35.78 3.02
10 11 1.077858 CCTGCCCTTCAGCCTCTTC 60.078 63.158 0.00 0.00 41.50 2.87
11 12 3.085223 CCTGCCCTTCAGCCTCTT 58.915 61.111 0.00 0.00 41.50 2.85
12 13 3.726144 GCCTGCCCTTCAGCCTCT 61.726 66.667 0.00 0.00 41.50 3.69
15 16 4.496336 ATCGCCTGCCCTTCAGCC 62.496 66.667 0.00 0.00 41.50 4.85
16 17 3.207669 CATCGCCTGCCCTTCAGC 61.208 66.667 0.00 0.00 41.50 4.26
17 18 3.207669 GCATCGCCTGCCCTTCAG 61.208 66.667 0.00 0.00 45.66 3.02
25 26 2.481212 TGCCTAAAAGCATCGCCTG 58.519 52.632 0.00 0.00 38.00 4.85
33 34 0.028637 GAGCTCGCATGCCTAAAAGC 59.971 55.000 13.15 13.01 0.00 3.51
34 35 1.329906 CAGAGCTCGCATGCCTAAAAG 59.670 52.381 13.15 3.35 0.00 2.27
35 36 1.372582 CAGAGCTCGCATGCCTAAAA 58.627 50.000 13.15 0.00 0.00 1.52
36 37 0.462581 CCAGAGCTCGCATGCCTAAA 60.463 55.000 13.15 0.00 0.00 1.85
37 38 1.144716 CCAGAGCTCGCATGCCTAA 59.855 57.895 13.15 0.00 0.00 2.69
38 39 1.329913 TTCCAGAGCTCGCATGCCTA 61.330 55.000 13.15 0.00 0.00 3.93
39 40 2.189191 TTTCCAGAGCTCGCATGCCT 62.189 55.000 13.15 2.91 0.00 4.75
40 41 1.308069 TTTTCCAGAGCTCGCATGCC 61.308 55.000 13.15 0.00 0.00 4.40
41 42 0.523072 TTTTTCCAGAGCTCGCATGC 59.477 50.000 7.91 7.91 0.00 4.06
57 58 7.929785 ACATCGTCGGACCAATATATACTTTTT 59.070 33.333 1.91 0.00 0.00 1.94
58 59 7.439381 ACATCGTCGGACCAATATATACTTTT 58.561 34.615 1.91 0.00 0.00 2.27
59 60 6.989659 ACATCGTCGGACCAATATATACTTT 58.010 36.000 1.91 0.00 0.00 2.66
60 61 6.585695 ACATCGTCGGACCAATATATACTT 57.414 37.500 1.91 0.00 0.00 2.24
61 62 6.585695 AACATCGTCGGACCAATATATACT 57.414 37.500 1.91 0.00 0.00 2.12
62 63 5.510674 CGAACATCGTCGGACCAATATATAC 59.489 44.000 1.91 0.00 37.37 1.47
63 64 5.412286 TCGAACATCGTCGGACCAATATATA 59.588 40.000 1.91 0.00 41.35 0.86
64 65 4.216902 TCGAACATCGTCGGACCAATATAT 59.783 41.667 1.91 0.00 41.35 0.86
65 66 3.565063 TCGAACATCGTCGGACCAATATA 59.435 43.478 1.91 0.00 41.35 0.86
66 67 2.359848 TCGAACATCGTCGGACCAATAT 59.640 45.455 1.91 0.00 41.35 1.28
67 68 1.744522 TCGAACATCGTCGGACCAATA 59.255 47.619 1.91 0.00 41.35 1.90
68 69 0.528924 TCGAACATCGTCGGACCAAT 59.471 50.000 1.91 0.00 41.35 3.16
69 70 0.109458 CTCGAACATCGTCGGACCAA 60.109 55.000 1.91 0.00 41.35 3.67
70 71 0.956902 TCTCGAACATCGTCGGACCA 60.957 55.000 1.91 0.00 41.35 4.02
71 72 0.522915 GTCTCGAACATCGTCGGACC 60.523 60.000 1.91 0.00 41.35 4.46
72 73 0.167470 TGTCTCGAACATCGTCGGAC 59.833 55.000 0.00 0.00 41.35 4.79
73 74 0.446616 CTGTCTCGAACATCGTCGGA 59.553 55.000 0.00 0.00 41.35 4.55
74 75 0.446616 TCTGTCTCGAACATCGTCGG 59.553 55.000 0.00 0.00 41.35 4.79
75 76 1.128878 AGTCTGTCTCGAACATCGTCG 59.871 52.381 0.00 0.00 41.35 5.12
76 77 2.904011 AGTCTGTCTCGAACATCGTC 57.096 50.000 0.00 0.00 41.35 4.20
77 78 2.093941 CGTAGTCTGTCTCGAACATCGT 59.906 50.000 0.00 0.00 41.35 3.73
78 79 2.695148 CGTAGTCTGTCTCGAACATCG 58.305 52.381 1.76 0.00 42.10 3.84
79 80 2.159558 TGCGTAGTCTGTCTCGAACATC 60.160 50.000 1.76 0.37 37.23 3.06
80 81 1.810755 TGCGTAGTCTGTCTCGAACAT 59.189 47.619 1.76 0.00 37.23 2.71
81 82 1.197036 CTGCGTAGTCTGTCTCGAACA 59.803 52.381 0.00 0.00 36.18 3.18
82 83 1.884756 CTGCGTAGTCTGTCTCGAAC 58.115 55.000 0.00 0.00 0.00 3.95
83 84 0.168348 GCTGCGTAGTCTGTCTCGAA 59.832 55.000 1.53 0.00 0.00 3.71
84 85 0.673956 AGCTGCGTAGTCTGTCTCGA 60.674 55.000 1.53 0.00 0.00 4.04
85 86 0.522286 CAGCTGCGTAGTCTGTCTCG 60.522 60.000 0.00 0.00 0.00 4.04
86 87 0.523966 ACAGCTGCGTAGTCTGTCTC 59.476 55.000 15.27 0.00 36.96 3.36
87 88 0.242286 CACAGCTGCGTAGTCTGTCT 59.758 55.000 21.06 5.38 38.41 3.41
88 89 0.241213 TCACAGCTGCGTAGTCTGTC 59.759 55.000 21.06 0.00 38.41 3.51
89 90 0.891373 ATCACAGCTGCGTAGTCTGT 59.109 50.000 15.27 19.19 39.91 3.41
90 91 1.657594 CAATCACAGCTGCGTAGTCTG 59.342 52.381 15.27 18.18 35.53 3.51
91 92 1.546029 TCAATCACAGCTGCGTAGTCT 59.454 47.619 15.27 0.00 0.00 3.24
92 93 1.923204 CTCAATCACAGCTGCGTAGTC 59.077 52.381 15.27 0.00 0.00 2.59
93 94 1.404717 CCTCAATCACAGCTGCGTAGT 60.405 52.381 15.27 0.00 0.00 2.73
94 95 1.284657 CCTCAATCACAGCTGCGTAG 58.715 55.000 15.27 1.30 0.00 3.51
95 96 0.740868 GCCTCAATCACAGCTGCGTA 60.741 55.000 15.27 0.00 0.00 4.42
96 97 2.037136 GCCTCAATCACAGCTGCGT 61.037 57.895 15.27 0.00 0.00 5.24
97 98 2.758089 GGCCTCAATCACAGCTGCG 61.758 63.158 15.27 3.95 0.00 5.18
98 99 2.413142 GGGCCTCAATCACAGCTGC 61.413 63.158 15.27 0.00 0.00 5.25
99 100 0.747283 GAGGGCCTCAATCACAGCTG 60.747 60.000 28.55 13.48 0.00 4.24
100 101 1.203441 TGAGGGCCTCAATCACAGCT 61.203 55.000 33.38 0.00 37.57 4.24
101 102 0.322816 TTGAGGGCCTCAATCACAGC 60.323 55.000 38.53 10.42 44.27 4.40
102 103 3.963733 TTGAGGGCCTCAATCACAG 57.036 52.632 38.53 0.00 44.27 3.66
109 110 1.826720 GAATTTGCATTGAGGGCCTCA 59.173 47.619 32.01 32.01 38.87 3.86
110 111 2.105766 AGAATTTGCATTGAGGGCCTC 58.894 47.619 26.95 26.95 0.00 4.70
111 112 1.829222 CAGAATTTGCATTGAGGGCCT 59.171 47.619 5.25 5.25 0.00 5.19
112 113 1.551883 ACAGAATTTGCATTGAGGGCC 59.448 47.619 0.00 0.00 0.00 5.80
113 114 2.231964 TCACAGAATTTGCATTGAGGGC 59.768 45.455 0.00 0.00 0.00 5.19
114 115 4.441079 GGATCACAGAATTTGCATTGAGGG 60.441 45.833 0.00 0.00 0.00 4.30
115 116 4.401519 AGGATCACAGAATTTGCATTGAGG 59.598 41.667 0.00 0.00 0.00 3.86
116 117 5.340803 CAGGATCACAGAATTTGCATTGAG 58.659 41.667 0.00 0.00 0.00 3.02
117 118 4.381185 GCAGGATCACAGAATTTGCATTGA 60.381 41.667 0.00 0.00 0.00 2.57
118 119 3.863424 GCAGGATCACAGAATTTGCATTG 59.137 43.478 0.00 0.00 0.00 2.82
119 120 3.118884 GGCAGGATCACAGAATTTGCATT 60.119 43.478 0.00 0.00 0.00 3.56
120 121 2.429610 GGCAGGATCACAGAATTTGCAT 59.570 45.455 0.00 0.00 0.00 3.96
121 122 1.820519 GGCAGGATCACAGAATTTGCA 59.179 47.619 0.00 0.00 0.00 4.08
122 123 1.820519 TGGCAGGATCACAGAATTTGC 59.179 47.619 0.00 0.00 0.00 3.68
123 124 3.760151 TCTTGGCAGGATCACAGAATTTG 59.240 43.478 0.00 0.00 0.00 2.32
124 125 4.038271 TCTTGGCAGGATCACAGAATTT 57.962 40.909 0.00 0.00 0.00 1.82
125 126 3.726557 TCTTGGCAGGATCACAGAATT 57.273 42.857 0.00 0.00 0.00 2.17
126 127 3.552875 CATCTTGGCAGGATCACAGAAT 58.447 45.455 9.41 0.00 0.00 2.40
127 128 2.356432 CCATCTTGGCAGGATCACAGAA 60.356 50.000 9.41 0.00 0.00 3.02
128 129 1.211212 CCATCTTGGCAGGATCACAGA 59.789 52.381 9.41 0.00 0.00 3.41
129 130 1.064906 ACCATCTTGGCAGGATCACAG 60.065 52.381 9.41 1.98 42.67 3.66
130 131 0.994247 ACCATCTTGGCAGGATCACA 59.006 50.000 9.41 0.00 42.67 3.58
131 132 1.386533 CACCATCTTGGCAGGATCAC 58.613 55.000 9.41 0.00 42.67 3.06
132 133 0.256752 CCACCATCTTGGCAGGATCA 59.743 55.000 9.41 0.00 42.67 2.92
133 134 0.466922 CCCACCATCTTGGCAGGATC 60.467 60.000 9.41 0.00 42.67 3.36
134 135 1.616921 CCCACCATCTTGGCAGGAT 59.383 57.895 6.25 6.25 42.67 3.24
135 136 3.089838 CCCACCATCTTGGCAGGA 58.910 61.111 0.39 0.39 42.67 3.86
136 137 2.757099 GCCCACCATCTTGGCAGG 60.757 66.667 0.00 0.00 42.67 4.85
139 140 0.034089 AAGTAGCCCACCATCTTGGC 60.034 55.000 0.00 0.00 42.67 4.52
140 141 2.238646 TGTAAGTAGCCCACCATCTTGG 59.761 50.000 0.00 0.00 45.02 3.61
141 142 3.627395 TGTAAGTAGCCCACCATCTTG 57.373 47.619 0.00 0.00 0.00 3.02
142 143 3.618997 CGTTGTAAGTAGCCCACCATCTT 60.619 47.826 0.00 0.00 0.00 2.40
143 144 2.093658 CGTTGTAAGTAGCCCACCATCT 60.094 50.000 0.00 0.00 0.00 2.90
144 145 2.093869 TCGTTGTAAGTAGCCCACCATC 60.094 50.000 0.00 0.00 0.00 3.51
145 146 1.903860 TCGTTGTAAGTAGCCCACCAT 59.096 47.619 0.00 0.00 0.00 3.55
146 147 1.340088 TCGTTGTAAGTAGCCCACCA 58.660 50.000 0.00 0.00 0.00 4.17
147 148 2.685850 ATCGTTGTAAGTAGCCCACC 57.314 50.000 0.00 0.00 0.00 4.61
148 149 2.601763 CGAATCGTTGTAAGTAGCCCAC 59.398 50.000 0.00 0.00 0.00 4.61
149 150 2.231964 ACGAATCGTTGTAAGTAGCCCA 59.768 45.455 0.96 0.00 36.35 5.36
150 151 2.884827 ACGAATCGTTGTAAGTAGCCC 58.115 47.619 0.96 0.00 36.35 5.19
162 163 1.148310 CAGCAAGTCCAACGAATCGT 58.852 50.000 0.96 0.96 43.97 3.73
163 164 1.428448 TCAGCAAGTCCAACGAATCG 58.572 50.000 0.00 0.00 0.00 3.34
164 165 3.067106 TCTTCAGCAAGTCCAACGAATC 58.933 45.455 0.00 0.00 0.00 2.52
165 166 3.126001 TCTTCAGCAAGTCCAACGAAT 57.874 42.857 0.00 0.00 0.00 3.34
166 167 2.613026 TCTTCAGCAAGTCCAACGAA 57.387 45.000 0.00 0.00 0.00 3.85
167 168 2.613026 TTCTTCAGCAAGTCCAACGA 57.387 45.000 0.00 0.00 0.00 3.85
168 169 3.499918 AGAATTCTTCAGCAAGTCCAACG 59.500 43.478 0.88 0.00 0.00 4.10
169 170 4.083057 GGAGAATTCTTCAGCAAGTCCAAC 60.083 45.833 9.87 0.00 0.00 3.77
170 171 4.074970 GGAGAATTCTTCAGCAAGTCCAA 58.925 43.478 9.87 0.00 0.00 3.53
171 172 3.072915 TGGAGAATTCTTCAGCAAGTCCA 59.927 43.478 12.71 7.68 30.79 4.02
172 173 3.679389 TGGAGAATTCTTCAGCAAGTCC 58.321 45.455 12.71 5.10 0.00 3.85
173 174 5.184711 AGATGGAGAATTCTTCAGCAAGTC 58.815 41.667 29.03 17.65 40.25 3.01
174 175 5.176741 AGATGGAGAATTCTTCAGCAAGT 57.823 39.130 29.03 10.29 40.25 3.16
175 176 5.646793 TCAAGATGGAGAATTCTTCAGCAAG 59.353 40.000 29.03 21.21 40.25 4.01
176 177 5.563592 TCAAGATGGAGAATTCTTCAGCAA 58.436 37.500 29.03 14.29 40.25 3.91
177 178 5.169992 TCAAGATGGAGAATTCTTCAGCA 57.830 39.130 29.03 10.13 40.25 4.41
178 179 5.879223 TCTTCAAGATGGAGAATTCTTCAGC 59.121 40.000 22.09 22.09 38.13 4.26
179 180 7.918536 TTCTTCAAGATGGAGAATTCTTCAG 57.081 36.000 20.94 8.28 34.42 3.02
180 181 9.964354 TTATTCTTCAAGATGGAGAATTCTTCA 57.036 29.630 18.85 18.85 35.62 3.02
182 183 9.745018 TGTTATTCTTCAAGATGGAGAATTCTT 57.255 29.630 16.77 0.00 32.37 2.52
183 184 9.745018 TTGTTATTCTTCAAGATGGAGAATTCT 57.255 29.630 16.77 7.95 32.37 2.40
186 187 9.745018 TCTTTGTTATTCTTCAAGATGGAGAAT 57.255 29.630 16.03 16.03 34.20 2.40
187 188 9.745018 ATCTTTGTTATTCTTCAAGATGGAGAA 57.255 29.630 3.68 3.68 0.00 2.87
188 189 9.745018 AATCTTTGTTATTCTTCAAGATGGAGA 57.255 29.630 0.00 0.00 0.00 3.71
189 190 9.784680 CAATCTTTGTTATTCTTCAAGATGGAG 57.215 33.333 0.00 0.00 0.00 3.86
190 191 8.742777 CCAATCTTTGTTATTCTTCAAGATGGA 58.257 33.333 0.00 0.00 0.00 3.41
191 192 8.742777 TCCAATCTTTGTTATTCTTCAAGATGG 58.257 33.333 0.00 0.00 0.00 3.51
194 195 9.573166 TCTTCCAATCTTTGTTATTCTTCAAGA 57.427 29.630 0.00 0.00 0.00 3.02
195 196 9.837525 CTCTTCCAATCTTTGTTATTCTTCAAG 57.162 33.333 0.00 0.00 0.00 3.02
196 197 9.573166 TCTCTTCCAATCTTTGTTATTCTTCAA 57.427 29.630 0.00 0.00 0.00 2.69
197 198 9.224267 CTCTCTTCCAATCTTTGTTATTCTTCA 57.776 33.333 0.00 0.00 0.00 3.02
198 199 9.442047 TCTCTCTTCCAATCTTTGTTATTCTTC 57.558 33.333 0.00 0.00 0.00 2.87
199 200 9.447157 CTCTCTCTTCCAATCTTTGTTATTCTT 57.553 33.333 0.00 0.00 0.00 2.52
200 201 7.552330 GCTCTCTCTTCCAATCTTTGTTATTCT 59.448 37.037 0.00 0.00 0.00 2.40
201 202 7.335422 TGCTCTCTCTTCCAATCTTTGTTATTC 59.665 37.037 0.00 0.00 0.00 1.75
202 203 7.170965 TGCTCTCTCTTCCAATCTTTGTTATT 58.829 34.615 0.00 0.00 0.00 1.40
203 204 6.715280 TGCTCTCTCTTCCAATCTTTGTTAT 58.285 36.000 0.00 0.00 0.00 1.89
204 205 6.114187 TGCTCTCTCTTCCAATCTTTGTTA 57.886 37.500 0.00 0.00 0.00 2.41
205 206 4.978099 TGCTCTCTCTTCCAATCTTTGTT 58.022 39.130 0.00 0.00 0.00 2.83
206 207 4.630644 TGCTCTCTCTTCCAATCTTTGT 57.369 40.909 0.00 0.00 0.00 2.83
207 208 4.758674 TGTTGCTCTCTCTTCCAATCTTTG 59.241 41.667 0.00 0.00 0.00 2.77
208 209 4.978099 TGTTGCTCTCTCTTCCAATCTTT 58.022 39.130 0.00 0.00 0.00 2.52
209 210 4.630644 TGTTGCTCTCTCTTCCAATCTT 57.369 40.909 0.00 0.00 0.00 2.40
210 211 4.565236 CCTTGTTGCTCTCTCTTCCAATCT 60.565 45.833 0.00 0.00 0.00 2.40
211 212 3.688673 CCTTGTTGCTCTCTCTTCCAATC 59.311 47.826 0.00 0.00 0.00 2.67
212 213 3.683802 CCTTGTTGCTCTCTCTTCCAAT 58.316 45.455 0.00 0.00 0.00 3.16
213 214 2.811873 GCCTTGTTGCTCTCTCTTCCAA 60.812 50.000 0.00 0.00 0.00 3.53
214 215 1.271054 GCCTTGTTGCTCTCTCTTCCA 60.271 52.381 0.00 0.00 0.00 3.53
215 216 1.003003 AGCCTTGTTGCTCTCTCTTCC 59.997 52.381 0.00 0.00 36.75 3.46
216 217 2.075338 CAGCCTTGTTGCTCTCTCTTC 58.925 52.381 0.00 0.00 40.32 2.87
217 218 1.881498 GCAGCCTTGTTGCTCTCTCTT 60.881 52.381 0.00 0.00 40.32 2.85
218 219 0.321475 GCAGCCTTGTTGCTCTCTCT 60.321 55.000 0.00 0.00 40.32 3.10
219 220 0.321475 AGCAGCCTTGTTGCTCTCTC 60.321 55.000 0.00 0.00 46.49 3.20
220 221 1.759881 AGCAGCCTTGTTGCTCTCT 59.240 52.632 0.00 0.00 46.49 3.10
221 222 4.393693 AGCAGCCTTGTTGCTCTC 57.606 55.556 0.00 0.00 46.49 3.20
225 226 2.229784 AGTTTATGAGCAGCCTTGTTGC 59.770 45.455 0.00 0.00 40.00 4.17
226 227 4.232221 CAAGTTTATGAGCAGCCTTGTTG 58.768 43.478 0.00 0.00 0.00 3.33
227 228 3.305608 GCAAGTTTATGAGCAGCCTTGTT 60.306 43.478 7.03 0.00 33.57 2.83
228 229 2.229784 GCAAGTTTATGAGCAGCCTTGT 59.770 45.455 7.03 0.00 33.57 3.16
229 230 2.490903 AGCAAGTTTATGAGCAGCCTTG 59.509 45.455 0.00 0.00 34.03 3.61
230 231 2.490903 CAGCAAGTTTATGAGCAGCCTT 59.509 45.455 0.00 0.00 0.00 4.35
231 232 2.089980 CAGCAAGTTTATGAGCAGCCT 58.910 47.619 0.00 0.00 0.00 4.58
232 233 1.468736 GCAGCAAGTTTATGAGCAGCC 60.469 52.381 0.00 0.00 34.03 4.85
233 234 1.471684 AGCAGCAAGTTTATGAGCAGC 59.528 47.619 0.00 0.00 39.41 5.25
234 235 3.844577 AAGCAGCAAGTTTATGAGCAG 57.155 42.857 0.00 0.00 0.00 4.24
239 240 6.512415 GCTCTACCATAAGCAGCAAGTTTATG 60.512 42.308 14.56 14.56 45.57 1.90
240 241 5.529060 GCTCTACCATAAGCAGCAAGTTTAT 59.471 40.000 0.00 0.00 38.42 1.40
241 242 4.876107 GCTCTACCATAAGCAGCAAGTTTA 59.124 41.667 0.00 0.00 38.42 2.01
242 243 3.691609 GCTCTACCATAAGCAGCAAGTTT 59.308 43.478 0.00 0.00 38.42 2.66
243 244 3.054802 AGCTCTACCATAAGCAGCAAGTT 60.055 43.478 0.00 0.00 41.06 2.66
244 245 2.503356 AGCTCTACCATAAGCAGCAAGT 59.497 45.455 0.00 0.00 41.06 3.16
245 246 3.191078 AGCTCTACCATAAGCAGCAAG 57.809 47.619 0.00 0.00 41.06 4.01
246 247 4.753516 TTAGCTCTACCATAAGCAGCAA 57.246 40.909 0.00 0.00 41.06 3.91
247 248 4.503817 CCATTAGCTCTACCATAAGCAGCA 60.504 45.833 0.00 0.00 41.06 4.41
248 249 3.999663 CCATTAGCTCTACCATAAGCAGC 59.000 47.826 0.00 0.00 41.06 5.25
249 250 3.999663 GCCATTAGCTCTACCATAAGCAG 59.000 47.826 0.00 0.00 41.06 4.24
250 251 3.390967 TGCCATTAGCTCTACCATAAGCA 59.609 43.478 0.00 0.00 44.23 3.91
251 252 3.999663 CTGCCATTAGCTCTACCATAAGC 59.000 47.826 0.00 0.00 44.23 3.09
252 253 5.220710 ACTGCCATTAGCTCTACCATAAG 57.779 43.478 0.00 0.00 44.23 1.73
253 254 5.630415 AACTGCCATTAGCTCTACCATAA 57.370 39.130 0.00 0.00 44.23 1.90
254 255 5.630415 AAACTGCCATTAGCTCTACCATA 57.370 39.130 0.00 0.00 44.23 2.74
255 256 4.510167 AAACTGCCATTAGCTCTACCAT 57.490 40.909 0.00 0.00 44.23 3.55
256 257 4.301072 AAAACTGCCATTAGCTCTACCA 57.699 40.909 0.00 0.00 44.23 3.25
276 277 1.047002 CACCCTGCCCATCACAAAAA 58.953 50.000 0.00 0.00 0.00 1.94
277 278 1.470996 GCACCCTGCCCATCACAAAA 61.471 55.000 0.00 0.00 37.42 2.44
278 279 1.907807 GCACCCTGCCCATCACAAA 60.908 57.895 0.00 0.00 37.42 2.83
279 280 2.283101 GCACCCTGCCCATCACAA 60.283 61.111 0.00 0.00 37.42 3.33
288 289 5.011738 TCAGTTATACTATAAGGCACCCTGC 59.988 44.000 0.00 0.00 44.08 4.85
289 290 6.665992 TCAGTTATACTATAAGGCACCCTG 57.334 41.667 0.00 0.00 32.13 4.45
290 291 6.787957 ACATCAGTTATACTATAAGGCACCCT 59.212 38.462 0.00 0.00 33.87 4.34
291 292 7.005709 ACATCAGTTATACTATAAGGCACCC 57.994 40.000 0.00 0.00 0.00 4.61
305 306 9.950496 ACTGTCTTTCAAGATTACATCAGTTAT 57.050 29.630 3.56 0.00 33.67 1.89
307 308 9.209175 GTACTGTCTTTCAAGATTACATCAGTT 57.791 33.333 11.39 1.22 36.71 3.16
308 309 8.589338 AGTACTGTCTTTCAAGATTACATCAGT 58.411 33.333 0.00 11.07 38.04 3.41
309 310 8.994429 AGTACTGTCTTTCAAGATTACATCAG 57.006 34.615 0.00 0.00 37.39 2.90
310 311 8.807118 AGAGTACTGTCTTTCAAGATTACATCA 58.193 33.333 0.00 0.00 37.39 3.07
311 312 9.081997 CAGAGTACTGTCTTTCAAGATTACATC 57.918 37.037 0.00 0.00 39.11 3.06
312 313 8.037758 CCAGAGTACTGTCTTTCAAGATTACAT 58.962 37.037 0.00 0.00 42.05 2.29
313 314 7.378966 CCAGAGTACTGTCTTTCAAGATTACA 58.621 38.462 0.00 0.00 42.05 2.41
314 315 6.814146 CCCAGAGTACTGTCTTTCAAGATTAC 59.186 42.308 0.00 0.00 42.05 1.89
315 316 6.497259 ACCCAGAGTACTGTCTTTCAAGATTA 59.503 38.462 0.00 0.00 42.05 1.75
316 317 5.308237 ACCCAGAGTACTGTCTTTCAAGATT 59.692 40.000 0.00 0.00 42.05 2.40
317 318 4.841246 ACCCAGAGTACTGTCTTTCAAGAT 59.159 41.667 0.00 0.00 42.05 2.40
318 319 4.223953 ACCCAGAGTACTGTCTTTCAAGA 58.776 43.478 0.00 0.00 42.05 3.02
319 320 4.608948 ACCCAGAGTACTGTCTTTCAAG 57.391 45.455 0.00 0.00 42.05 3.02
320 321 5.464030 GTACCCAGAGTACTGTCTTTCAA 57.536 43.478 0.00 0.00 46.69 2.69
351 352 9.975218 TTTTACAGGGAAAAGAGAGCTTTATAT 57.025 29.630 0.00 0.00 43.32 0.86
352 353 9.802039 TTTTTACAGGGAAAAGAGAGCTTTATA 57.198 29.630 0.00 0.00 43.32 0.98
353 354 8.706322 TTTTTACAGGGAAAAGAGAGCTTTAT 57.294 30.769 0.00 0.00 43.32 1.40
433 434 9.264719 CATCTTGTGCTAATATGTCAATCACTA 57.735 33.333 0.00 0.00 0.00 2.74
466 467 7.715265 AATGATACCATTGAGACGAATACAC 57.285 36.000 0.00 0.00 41.18 2.90
490 491 5.649395 CCAATTAGAATGAAAGCAGACTCCA 59.351 40.000 0.00 0.00 0.00 3.86
510 511 6.295011 CCTCTCTCGCTGAGTATTATTCCAAT 60.295 42.308 5.66 0.00 43.13 3.16
511 512 5.010112 CCTCTCTCGCTGAGTATTATTCCAA 59.990 44.000 5.66 0.00 43.13 3.53
524 525 1.480137 AGATTGGTTCCTCTCTCGCTG 59.520 52.381 0.00 0.00 0.00 5.18
525 526 1.754226 GAGATTGGTTCCTCTCTCGCT 59.246 52.381 5.84 0.00 35.95 4.93
552 553 9.288576 CATGGTCATTAGTGTCATAACCATATT 57.711 33.333 7.83 0.00 42.55 1.28
560 561 7.716560 CCATCTTTCATGGTCATTAGTGTCATA 59.283 37.037 0.00 0.00 34.56 2.15
562 563 5.882000 CCATCTTTCATGGTCATTAGTGTCA 59.118 40.000 0.00 0.00 34.56 3.58
569 570 5.336102 AGTTTCCCATCTTTCATGGTCATT 58.664 37.500 0.00 0.00 37.48 2.57
576 577 4.228210 TCTGGCTAGTTTCCCATCTTTCAT 59.772 41.667 0.00 0.00 0.00 2.57
586 587 2.744741 GCTCTTTGTCTGGCTAGTTTCC 59.255 50.000 0.00 0.00 0.00 3.13
588 589 2.553247 GGGCTCTTTGTCTGGCTAGTTT 60.553 50.000 0.00 0.00 0.00 2.66
601 602 0.033601 TGTGGTGTGTTGGGCTCTTT 60.034 50.000 0.00 0.00 0.00 2.52
625 626 4.701765 AGAACATGGATGTAGATCTGTGC 58.298 43.478 5.18 0.00 40.80 4.57
658 659 7.761704 TGATCTTCTAGTTGTTCATTGTCTAGC 59.238 37.037 0.00 0.00 0.00 3.42
705 706 9.720667 GCTTGCTCAAAATTACAAAAAGAAAAT 57.279 25.926 0.00 0.00 0.00 1.82
711 712 8.038492 ACAAAGCTTGCTCAAAATTACAAAAA 57.962 26.923 0.00 0.00 0.00 1.94
905 908 6.420903 GCCATCCGAGCCTTTTATTTTTATTC 59.579 38.462 0.00 0.00 0.00 1.75
906 909 6.098266 AGCCATCCGAGCCTTTTATTTTTATT 59.902 34.615 0.00 0.00 0.00 1.40
907 910 5.598417 AGCCATCCGAGCCTTTTATTTTTAT 59.402 36.000 0.00 0.00 0.00 1.40
908 911 4.953579 AGCCATCCGAGCCTTTTATTTTTA 59.046 37.500 0.00 0.00 0.00 1.52
949 952 1.664873 CGGCCCATGTTGCTTTTCA 59.335 52.632 0.00 0.00 0.00 2.69
969 972 4.988486 GCACAACACAGCTGCGGC 62.988 66.667 15.27 10.33 39.06 6.53
1045 1049 4.429212 CGGCATGGACGTGTCGGA 62.429 66.667 10.43 0.00 43.05 4.55
1178 1188 4.506255 GGATTGGACGGGCAGGGG 62.506 72.222 0.00 0.00 0.00 4.79
1179 1189 3.727258 TGGATTGGACGGGCAGGG 61.727 66.667 0.00 0.00 0.00 4.45
1180 1190 2.438434 GTGGATTGGACGGGCAGG 60.438 66.667 0.00 0.00 0.00 4.85
1181 1191 2.438434 GGTGGATTGGACGGGCAG 60.438 66.667 0.00 0.00 0.00 4.85
1182 1192 2.933287 AGGTGGATTGGACGGGCA 60.933 61.111 0.00 0.00 0.00 5.36
1183 1193 2.124695 GAGGTGGATTGGACGGGC 60.125 66.667 0.00 0.00 0.00 6.13
1498 1517 1.043816 GATTCATCCTCAGCCTCCGA 58.956 55.000 0.00 0.00 0.00 4.55
1750 1769 1.272769 GCCGAGTAATAGGGCGAGAAT 59.727 52.381 0.00 0.00 37.06 2.40
1842 1861 1.836383 CGTTCTCGGGTTCCTTATCG 58.164 55.000 0.00 0.00 0.00 2.92
1854 1873 0.856641 TTTTGAAGACGCCGTTCTCG 59.143 50.000 0.00 0.00 0.00 4.04
1866 1885 5.404946 ACATCATTTCGGAGCATTTTGAAG 58.595 37.500 0.00 0.00 0.00 3.02
1926 1945 1.032794 TTGCGCCAATGTTAACCACA 58.967 45.000 4.18 0.00 40.71 4.17
1944 1963 1.238439 CCTCAGTGACAATTGCCGTT 58.762 50.000 5.05 0.00 0.00 4.44
1947 1966 1.503542 CGCCTCAGTGACAATTGCC 59.496 57.895 5.05 0.00 0.00 4.52
1950 1969 1.675641 GGCCGCCTCAGTGACAATT 60.676 57.895 0.71 0.00 0.00 2.32
1959 1978 4.349503 ATTGCTGTGGCCGCCTCA 62.350 61.111 15.15 12.60 37.74 3.86
1965 1984 2.268076 ACCGAACATTGCTGTGGCC 61.268 57.895 0.00 0.00 35.22 5.36
1980 1999 1.069765 ACTGACACCTGCTTCACCG 59.930 57.895 0.00 0.00 0.00 4.94
2022 2041 3.482722 TCTGTAAGAAGTAGAACGGCG 57.517 47.619 4.80 4.80 42.31 6.46
2052 2071 4.321156 GCATTGTGGACTGCAACATTCTTA 60.321 41.667 0.00 0.00 38.28 2.10
2190 2209 6.070251 TCACATATGGCTCACTTCTTCCTTTA 60.070 38.462 7.80 0.00 0.00 1.85
2271 2290 4.586421 TCAATCATATCCTGCTCGTCTTCT 59.414 41.667 0.00 0.00 0.00 2.85
3027 3046 4.397420 TGACCTTTCTTGCATTAGCTTCA 58.603 39.130 0.00 0.00 42.74 3.02
3051 3070 8.116651 TGCTTATTGGCTTGAAACATACTTTA 57.883 30.769 0.00 0.00 0.00 1.85
3186 3205 4.322080 TTCTGTTATATCAGGGCACTCG 57.678 45.455 10.27 0.00 36.25 4.18
3216 3235 4.026744 AGTATGAAACTAGCTCTGCAGGA 58.973 43.478 15.13 0.00 36.36 3.86
3277 3296 5.357596 TGTTTACTTTGTTACCTTGTCCCAC 59.642 40.000 0.00 0.00 0.00 4.61
3393 3413 4.814771 GCTGTTTTCCGTAGCCTATTATGT 59.185 41.667 0.00 0.00 0.00 2.29
3428 3448 0.532573 TAGCCTTCGCAGTCTCCTTG 59.467 55.000 0.00 0.00 37.52 3.61
3429 3449 1.066787 GTTAGCCTTCGCAGTCTCCTT 60.067 52.381 0.00 0.00 37.52 3.36
3473 3493 7.780745 AGTGCACCTCTAGATTACTACTAATGT 59.219 37.037 14.63 0.00 0.00 2.71
3476 3496 7.344134 TCAGTGCACCTCTAGATTACTACTAA 58.656 38.462 14.63 0.00 0.00 2.24
3498 3518 1.002888 AGTTGATGCCTGACACCTCAG 59.997 52.381 0.00 0.00 43.40 3.35
3510 3530 1.510623 CGTGCAGCGAAGTTGATGC 60.511 57.895 1.72 1.72 42.98 3.91
3530 3550 2.103042 CAGCGAGGCCTACAAGCAC 61.103 63.158 4.42 0.00 0.00 4.40
3604 3624 3.872603 AGTCGTGCCAGCCACCAA 61.873 61.111 0.00 0.00 41.53 3.67
3617 3637 3.127203 CACTACTACCTTCTGTCCAGTCG 59.873 52.174 0.00 0.00 0.00 4.18
3621 3641 2.176889 GGCACTACTACCTTCTGTCCA 58.823 52.381 0.00 0.00 0.00 4.02
3632 3652 1.945354 GCCTCTGTGCGGCACTACTA 61.945 60.000 30.81 12.23 46.77 1.82
3704 3724 7.026631 TGTCAGTAACAAAACCAGAATTGAG 57.973 36.000 0.00 0.00 34.03 3.02
3750 3770 0.742505 TTACCACATACTCGCCCTCG 59.257 55.000 0.00 0.00 0.00 4.63
3763 3784 0.984995 AGGAGGTCAGGCTTTACCAC 59.015 55.000 16.12 10.61 43.14 4.16
3775 3796 3.369997 GGATCAAGGAGAAACAGGAGGTC 60.370 52.174 0.00 0.00 0.00 3.85
3782 3803 3.517100 CTGGAGAGGATCAAGGAGAAACA 59.483 47.826 0.00 0.00 37.82 2.83
4025 4046 3.862845 CCACAACAAAACTTGCAGGTTAC 59.137 43.478 15.22 0.00 0.00 2.50
4031 4052 1.001293 TGCACCACAACAAAACTTGCA 59.999 42.857 0.00 0.00 0.00 4.08
4281 4308 5.036117 TGAAGTTTCTCTGGTTGTTAGCT 57.964 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.