Multiple sequence alignment - TraesCS5A01G462000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G462000 chr5A 100.000 3026 0 0 1 3026 642904649 642907674 0.000000e+00 5589.0
1 TraesCS5A01G462000 chr5A 84.607 1754 208 21 962 2698 641781622 641779914 0.000000e+00 1687.0
2 TraesCS5A01G462000 chr5A 82.996 1088 170 13 884 1963 642502635 642503715 0.000000e+00 970.0
3 TraesCS5A01G462000 chr5A 88.785 321 35 1 1955 2274 642503737 642504057 2.830000e-105 392.0
4 TraesCS5A01G462000 chr5A 86.400 250 31 2 2779 3025 642536534 642536783 1.380000e-68 270.0
5 TraesCS5A01G462000 chr5A 91.304 184 16 0 1986 2169 642695536 642695719 5.010000e-63 252.0
6 TraesCS5A01G462000 chr5A 91.617 167 12 2 2219 2385 642695720 642695884 2.350000e-56 230.0
7 TraesCS5A01G462000 chr5A 91.139 158 14 0 2797 2954 642142234 642142077 6.570000e-52 215.0
8 TraesCS5A01G462000 chr5A 82.243 214 32 5 2818 3026 643022129 643022341 2.400000e-41 180.0
9 TraesCS5A01G462000 chr5A 75.065 385 61 18 1951 2333 633150333 633150684 2.430000e-31 147.0
10 TraesCS5A01G462000 chr5D 94.696 2055 88 12 679 2716 514514909 514516959 0.000000e+00 3171.0
11 TraesCS5A01G462000 chr5D 86.037 974 129 4 994 1966 514412815 514411848 0.000000e+00 1038.0
12 TraesCS5A01G462000 chr5D 83.456 1088 168 11 884 1963 514294519 514295602 0.000000e+00 1002.0
13 TraesCS5A01G462000 chr5D 84.326 772 67 28 1955 2706 514295624 514296361 0.000000e+00 706.0
14 TraesCS5A01G462000 chr5D 93.966 232 10 3 2796 3026 514518049 514518277 6.210000e-92 348.0
15 TraesCS5A01G462000 chr5D 87.712 236 14 7 414 645 514514686 514514910 8.320000e-66 261.0
16 TraesCS5A01G462000 chr5D 76.289 388 69 14 1951 2333 505780672 505781041 5.150000e-43 185.0
17 TraesCS5A01G462000 chr5D 87.719 57 4 2 2735 2791 514521840 514521893 2.520000e-06 63.9
18 TraesCS5A01G462000 chr5B 94.196 1654 79 9 1074 2711 646627111 646628763 0.000000e+00 2507.0
19 TraesCS5A01G462000 chr5B 83.721 1892 242 27 831 2698 645063175 645061326 0.000000e+00 1727.0
20 TraesCS5A01G462000 chr5B 83.749 1083 164 11 890 1963 645993287 645992208 0.000000e+00 1014.0
21 TraesCS5A01G462000 chr5B 85.052 970 145 0 994 1963 646229876 646230845 0.000000e+00 989.0
22 TraesCS5A01G462000 chr5B 89.207 593 31 10 452 1029 646626538 646627112 0.000000e+00 710.0
23 TraesCS5A01G462000 chr5B 83.769 727 71 26 1955 2662 646267715 646268413 0.000000e+00 645.0
24 TraesCS5A01G462000 chr5B 88.319 351 41 0 1958 2308 645992183 645991833 3.610000e-114 422.0
25 TraesCS5A01G462000 chr5B 94.348 230 13 0 2797 3026 646629968 646630197 1.330000e-93 353.0
26 TraesCS5A01G462000 chr5B 89.453 256 26 1 1958 2213 645980524 645980270 3.760000e-84 322.0
27 TraesCS5A01G462000 chr5B 85.593 236 28 2 2797 3026 645903193 645902958 3.010000e-60 243.0
28 TraesCS5A01G462000 chr5B 84.848 231 27 4 2802 3026 646353128 646353356 3.040000e-55 226.0
29 TraesCS5A01G462000 chr5B 84.034 238 27 7 2792 3026 646480596 646480825 5.080000e-53 219.0
30 TraesCS5A01G462000 chr5B 82.710 214 31 5 2818 3026 647397065 647397277 5.150000e-43 185.0
31 TraesCS5A01G462000 chr1D 89.209 417 40 5 2 415 343523420 343523006 1.610000e-142 516.0
32 TraesCS5A01G462000 chr4D 88.942 416 44 2 1 414 102159035 102158620 2.080000e-141 512.0
33 TraesCS5A01G462000 chr2A 89.268 410 40 4 11 418 20961078 20960671 7.480000e-141 510.0
34 TraesCS5A01G462000 chr2A 88.095 420 46 4 1 418 554593834 554593417 2.100000e-136 496.0
35 TraesCS5A01G462000 chr3D 88.571 420 43 5 1 418 236667324 236666908 3.480000e-139 505.0
36 TraesCS5A01G462000 chr7B 89.136 405 40 4 14 415 615182194 615182597 4.500000e-138 501.0
37 TraesCS5A01G462000 chr2D 88.489 417 45 3 1 415 627064935 627064520 4.500000e-138 501.0
38 TraesCS5A01G462000 chr6D 88.517 418 41 5 2 415 75644200 75643786 1.620000e-137 499.0
39 TraesCS5A01G462000 chr6D 88.489 417 43 5 1 415 449665687 449666100 1.620000e-137 499.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G462000 chr5A 642904649 642907674 3025 False 5589.000 5589 100.000000 1 3026 1 chr5A.!!$F3 3025
1 TraesCS5A01G462000 chr5A 641779914 641781622 1708 True 1687.000 1687 84.607000 962 2698 1 chr5A.!!$R1 1736
2 TraesCS5A01G462000 chr5A 642502635 642504057 1422 False 681.000 970 85.890500 884 2274 2 chr5A.!!$F5 1390
3 TraesCS5A01G462000 chr5D 514411848 514412815 967 True 1038.000 1038 86.037000 994 1966 1 chr5D.!!$R1 972
4 TraesCS5A01G462000 chr5D 514514686 514521893 7207 False 960.975 3171 91.023250 414 3026 4 chr5D.!!$F3 2612
5 TraesCS5A01G462000 chr5D 514294519 514296361 1842 False 854.000 1002 83.891000 884 2706 2 chr5D.!!$F2 1822
6 TraesCS5A01G462000 chr5B 645061326 645063175 1849 True 1727.000 1727 83.721000 831 2698 1 chr5B.!!$R1 1867
7 TraesCS5A01G462000 chr5B 646626538 646630197 3659 False 1190.000 2507 92.583667 452 3026 3 chr5B.!!$F6 2574
8 TraesCS5A01G462000 chr5B 646229876 646230845 969 False 989.000 989 85.052000 994 1963 1 chr5B.!!$F1 969
9 TraesCS5A01G462000 chr5B 645991833 645993287 1454 True 718.000 1014 86.034000 890 2308 2 chr5B.!!$R4 1418
10 TraesCS5A01G462000 chr5B 646267715 646268413 698 False 645.000 645 83.769000 1955 2662 1 chr5B.!!$F2 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.107945 GCCAGATTGTTCGAGAGGCT 60.108 55.0 0.00 0.00 37.67 4.58 F
505 508 0.323451 TAGAGGAACAGCTGGCTCGA 60.323 55.0 19.93 3.47 0.00 4.04 F
1125 1160 0.666913 ACCGCGACAGCTATATTCGT 59.333 50.0 8.23 0.00 42.32 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1150 1185 0.325296 AAGGAGATGGCCCAGTCGTA 60.325 55.0 0.00 0.0 0.00 3.43 R
1755 1791 0.605589 CCATCTCAGTATCCTCGCCC 59.394 60.0 0.00 0.0 0.00 6.13 R
2793 3987 0.173935 TGTTCACTGTCCGACAACGT 59.826 50.0 2.19 0.0 37.88 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.524717 AACACCTATTATAATTGACCCATGC 57.475 36.000 2.68 0.00 0.00 4.06
48 49 5.705441 ACACCTATTATAATTGACCCATGCG 59.295 40.000 2.68 0.00 0.00 4.73
49 50 5.123820 CACCTATTATAATTGACCCATGCGG 59.876 44.000 2.68 0.00 37.81 5.69
59 60 4.157607 CCATGCGGGTGTAATCCC 57.842 61.111 0.00 0.00 43.78 3.85
70 71 5.986501 GGGTGTAATCCCATGTGTAAAAA 57.013 39.130 0.00 0.00 46.30 1.94
71 72 5.716094 GGGTGTAATCCCATGTGTAAAAAC 58.284 41.667 0.00 0.00 46.30 2.43
72 73 5.479027 GGGTGTAATCCCATGTGTAAAAACT 59.521 40.000 0.00 0.00 46.30 2.66
73 74 6.660094 GGGTGTAATCCCATGTGTAAAAACTA 59.340 38.462 0.00 0.00 46.30 2.24
74 75 7.340999 GGGTGTAATCCCATGTGTAAAAACTAT 59.659 37.037 0.00 0.00 46.30 2.12
75 76 8.745590 GGTGTAATCCCATGTGTAAAAACTATT 58.254 33.333 0.00 0.00 0.00 1.73
76 77 9.567848 GTGTAATCCCATGTGTAAAAACTATTG 57.432 33.333 0.00 0.00 0.00 1.90
77 78 9.303116 TGTAATCCCATGTGTAAAAACTATTGT 57.697 29.630 0.00 0.00 0.00 2.71
82 83 9.747898 TCCCATGTGTAAAAACTATTGTTATCT 57.252 29.630 0.00 0.00 34.96 1.98
84 85 9.702726 CCATGTGTAAAAACTATTGTTATCTCG 57.297 33.333 0.00 0.00 34.96 4.04
87 88 9.917129 TGTGTAAAAACTATTGTTATCTCGAGA 57.083 29.630 19.19 19.19 34.96 4.04
99 100 9.829507 ATTGTTATCTCGAGAAAGATGAAAGAT 57.170 29.630 20.91 0.19 36.66 2.40
103 104 9.973450 TTATCTCGAGAAAGATGAAAGATAAGG 57.027 33.333 20.91 0.00 36.66 2.69
104 105 7.411486 TCTCGAGAAAGATGAAAGATAAGGT 57.589 36.000 14.01 0.00 0.00 3.50
105 106 7.261325 TCTCGAGAAAGATGAAAGATAAGGTG 58.739 38.462 14.01 0.00 0.00 4.00
106 107 7.122799 TCTCGAGAAAGATGAAAGATAAGGTGA 59.877 37.037 14.01 0.00 0.00 4.02
107 108 7.261325 TCGAGAAAGATGAAAGATAAGGTGAG 58.739 38.462 0.00 0.00 0.00 3.51
108 109 6.478344 CGAGAAAGATGAAAGATAAGGTGAGG 59.522 42.308 0.00 0.00 0.00 3.86
109 110 7.502060 AGAAAGATGAAAGATAAGGTGAGGA 57.498 36.000 0.00 0.00 0.00 3.71
110 111 7.563906 AGAAAGATGAAAGATAAGGTGAGGAG 58.436 38.462 0.00 0.00 0.00 3.69
111 112 5.885449 AGATGAAAGATAAGGTGAGGAGG 57.115 43.478 0.00 0.00 0.00 4.30
112 113 5.533112 AGATGAAAGATAAGGTGAGGAGGA 58.467 41.667 0.00 0.00 0.00 3.71
113 114 5.602145 AGATGAAAGATAAGGTGAGGAGGAG 59.398 44.000 0.00 0.00 0.00 3.69
114 115 4.689062 TGAAAGATAAGGTGAGGAGGAGT 58.311 43.478 0.00 0.00 0.00 3.85
115 116 4.467795 TGAAAGATAAGGTGAGGAGGAGTG 59.532 45.833 0.00 0.00 0.00 3.51
116 117 3.039252 AGATAAGGTGAGGAGGAGTGG 57.961 52.381 0.00 0.00 0.00 4.00
117 118 2.316372 AGATAAGGTGAGGAGGAGTGGT 59.684 50.000 0.00 0.00 0.00 4.16
118 119 1.938585 TAAGGTGAGGAGGAGTGGTG 58.061 55.000 0.00 0.00 0.00 4.17
119 120 1.484444 AAGGTGAGGAGGAGTGGTGC 61.484 60.000 0.00 0.00 0.00 5.01
120 121 2.262915 GTGAGGAGGAGTGGTGCG 59.737 66.667 0.00 0.00 0.00 5.34
121 122 2.203640 TGAGGAGGAGTGGTGCGT 60.204 61.111 0.00 0.00 0.00 5.24
122 123 2.262915 GAGGAGGAGTGGTGCGTG 59.737 66.667 0.00 0.00 0.00 5.34
123 124 3.302347 GAGGAGGAGTGGTGCGTGG 62.302 68.421 0.00 0.00 0.00 4.94
124 125 3.626924 GGAGGAGTGGTGCGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
125 126 2.357517 GAGGAGTGGTGCGTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
126 127 3.883744 GAGGAGTGGTGCGTGGTGG 62.884 68.421 0.00 0.00 0.00 4.61
127 128 4.250305 GGAGTGGTGCGTGGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
128 129 2.972505 GAGTGGTGCGTGGTGGTG 60.973 66.667 0.00 0.00 0.00 4.17
129 130 3.454587 GAGTGGTGCGTGGTGGTGA 62.455 63.158 0.00 0.00 0.00 4.02
130 131 2.281484 GTGGTGCGTGGTGGTGAT 60.281 61.111 0.00 0.00 0.00 3.06
131 132 1.896660 GTGGTGCGTGGTGGTGATT 60.897 57.895 0.00 0.00 0.00 2.57
132 133 1.896183 TGGTGCGTGGTGGTGATTG 60.896 57.895 0.00 0.00 0.00 2.67
133 134 2.625823 GGTGCGTGGTGGTGATTGG 61.626 63.158 0.00 0.00 0.00 3.16
134 135 1.896660 GTGCGTGGTGGTGATTGGT 60.897 57.895 0.00 0.00 0.00 3.67
135 136 1.896183 TGCGTGGTGGTGATTGGTG 60.896 57.895 0.00 0.00 0.00 4.17
136 137 2.625823 GCGTGGTGGTGATTGGTGG 61.626 63.158 0.00 0.00 0.00 4.61
137 138 1.228124 CGTGGTGGTGATTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
138 139 1.234615 CGTGGTGGTGATTGGTGGTC 61.235 60.000 0.00 0.00 0.00 4.02
139 140 1.072332 TGGTGGTGATTGGTGGTCG 59.928 57.895 0.00 0.00 0.00 4.79
140 141 1.674322 GGTGGTGATTGGTGGTCGG 60.674 63.158 0.00 0.00 0.00 4.79
141 142 1.373435 GTGGTGATTGGTGGTCGGA 59.627 57.895 0.00 0.00 0.00 4.55
142 143 0.953960 GTGGTGATTGGTGGTCGGAC 60.954 60.000 0.00 0.00 0.00 4.79
143 144 1.125093 TGGTGATTGGTGGTCGGACT 61.125 55.000 8.23 0.00 0.00 3.85
144 145 0.673644 GGTGATTGGTGGTCGGACTG 60.674 60.000 8.23 0.00 0.00 3.51
145 146 0.320374 GTGATTGGTGGTCGGACTGA 59.680 55.000 8.23 0.00 0.00 3.41
146 147 0.608130 TGATTGGTGGTCGGACTGAG 59.392 55.000 8.23 0.00 0.00 3.35
147 148 0.741221 GATTGGTGGTCGGACTGAGC 60.741 60.000 8.23 6.53 45.46 4.26
152 153 3.827898 GGTCGGACTGAGCGGAGG 61.828 72.222 8.23 0.00 35.01 4.30
153 154 4.500116 GTCGGACTGAGCGGAGGC 62.500 72.222 0.00 0.00 40.37 4.70
155 156 3.842923 CGGACTGAGCGGAGGCAT 61.843 66.667 0.00 0.00 43.41 4.40
156 157 2.202987 GGACTGAGCGGAGGCATG 60.203 66.667 0.00 0.00 43.41 4.06
157 158 2.202987 GACTGAGCGGAGGCATGG 60.203 66.667 0.00 0.00 43.41 3.66
158 159 2.685017 ACTGAGCGGAGGCATGGA 60.685 61.111 0.00 0.00 43.41 3.41
159 160 2.244117 GACTGAGCGGAGGCATGGAA 62.244 60.000 0.00 0.00 43.41 3.53
160 161 1.078214 CTGAGCGGAGGCATGGAAA 60.078 57.895 0.00 0.00 43.41 3.13
161 162 0.465097 CTGAGCGGAGGCATGGAAAT 60.465 55.000 0.00 0.00 43.41 2.17
162 163 0.749091 TGAGCGGAGGCATGGAAATG 60.749 55.000 0.00 0.00 43.41 2.32
163 164 1.450531 GAGCGGAGGCATGGAAATGG 61.451 60.000 0.00 0.00 43.41 3.16
164 165 1.453745 GCGGAGGCATGGAAATGGA 60.454 57.895 0.00 0.00 39.62 3.41
165 166 1.728490 GCGGAGGCATGGAAATGGAC 61.728 60.000 0.00 0.00 39.62 4.02
166 167 1.439353 CGGAGGCATGGAAATGGACG 61.439 60.000 0.00 0.00 0.00 4.79
167 168 1.103398 GGAGGCATGGAAATGGACGG 61.103 60.000 0.00 0.00 0.00 4.79
168 169 0.394352 GAGGCATGGAAATGGACGGT 60.394 55.000 0.00 0.00 0.00 4.83
169 170 0.680921 AGGCATGGAAATGGACGGTG 60.681 55.000 0.00 0.00 0.00 4.94
170 171 1.139520 GCATGGAAATGGACGGTGC 59.860 57.895 0.00 0.00 0.00 5.01
171 172 1.315257 GCATGGAAATGGACGGTGCT 61.315 55.000 0.31 0.00 0.00 4.40
172 173 0.452987 CATGGAAATGGACGGTGCTG 59.547 55.000 0.31 0.00 0.00 4.41
173 174 0.680921 ATGGAAATGGACGGTGCTGG 60.681 55.000 0.31 0.00 0.00 4.85
174 175 2.700773 GGAAATGGACGGTGCTGGC 61.701 63.158 0.31 0.00 0.00 4.85
175 176 1.971167 GAAATGGACGGTGCTGGCA 60.971 57.895 0.31 0.00 0.00 4.92
176 177 1.926511 GAAATGGACGGTGCTGGCAG 61.927 60.000 10.94 10.94 0.00 4.85
196 197 4.023137 GCCACCATGCCAGATTGT 57.977 55.556 0.00 0.00 0.00 2.71
197 198 2.279842 GCCACCATGCCAGATTGTT 58.720 52.632 0.00 0.00 0.00 2.83
198 199 0.174162 GCCACCATGCCAGATTGTTC 59.826 55.000 0.00 0.00 0.00 3.18
199 200 0.452987 CCACCATGCCAGATTGTTCG 59.547 55.000 0.00 0.00 0.00 3.95
200 201 1.452110 CACCATGCCAGATTGTTCGA 58.548 50.000 0.00 0.00 0.00 3.71
201 202 1.399440 CACCATGCCAGATTGTTCGAG 59.601 52.381 0.00 0.00 0.00 4.04
202 203 1.278985 ACCATGCCAGATTGTTCGAGA 59.721 47.619 0.00 0.00 0.00 4.04
203 204 1.938577 CCATGCCAGATTGTTCGAGAG 59.061 52.381 0.00 0.00 0.00 3.20
204 205 1.938577 CATGCCAGATTGTTCGAGAGG 59.061 52.381 0.00 0.00 0.00 3.69
205 206 0.391661 TGCCAGATTGTTCGAGAGGC 60.392 55.000 0.00 0.00 40.93 4.70
206 207 0.107945 GCCAGATTGTTCGAGAGGCT 60.108 55.000 0.00 0.00 37.67 4.58
207 208 1.677217 GCCAGATTGTTCGAGAGGCTT 60.677 52.381 0.00 0.00 37.67 4.35
208 209 2.704572 CCAGATTGTTCGAGAGGCTTT 58.295 47.619 0.00 0.00 0.00 3.51
209 210 2.675348 CCAGATTGTTCGAGAGGCTTTC 59.325 50.000 0.00 0.00 0.00 2.62
210 211 3.594134 CAGATTGTTCGAGAGGCTTTCT 58.406 45.455 3.35 0.00 39.43 2.52
211 212 3.999663 CAGATTGTTCGAGAGGCTTTCTT 59.000 43.478 3.35 0.00 35.87 2.52
212 213 4.453819 CAGATTGTTCGAGAGGCTTTCTTT 59.546 41.667 3.35 0.00 35.87 2.52
213 214 5.049129 CAGATTGTTCGAGAGGCTTTCTTTT 60.049 40.000 3.35 0.00 35.87 2.27
214 215 5.532779 AGATTGTTCGAGAGGCTTTCTTTTT 59.467 36.000 3.35 0.00 35.87 1.94
249 250 5.982356 CAATGAGGTTGTGAGAGATAAGGA 58.018 41.667 0.00 0.00 33.01 3.36
250 251 6.590068 CAATGAGGTTGTGAGAGATAAGGAT 58.410 40.000 0.00 0.00 33.01 3.24
251 252 5.604758 TGAGGTTGTGAGAGATAAGGATG 57.395 43.478 0.00 0.00 0.00 3.51
252 253 5.272402 TGAGGTTGTGAGAGATAAGGATGA 58.728 41.667 0.00 0.00 0.00 2.92
253 254 5.721480 TGAGGTTGTGAGAGATAAGGATGAA 59.279 40.000 0.00 0.00 0.00 2.57
254 255 6.385176 TGAGGTTGTGAGAGATAAGGATGAAT 59.615 38.462 0.00 0.00 0.00 2.57
255 256 6.590068 AGGTTGTGAGAGATAAGGATGAATG 58.410 40.000 0.00 0.00 0.00 2.67
256 257 6.385176 AGGTTGTGAGAGATAAGGATGAATGA 59.615 38.462 0.00 0.00 0.00 2.57
257 258 6.705381 GGTTGTGAGAGATAAGGATGAATGAG 59.295 42.308 0.00 0.00 0.00 2.90
258 259 6.416631 TGTGAGAGATAAGGATGAATGAGG 57.583 41.667 0.00 0.00 0.00 3.86
259 260 5.306419 TGTGAGAGATAAGGATGAATGAGGG 59.694 44.000 0.00 0.00 0.00 4.30
260 261 5.541868 GTGAGAGATAAGGATGAATGAGGGA 59.458 44.000 0.00 0.00 0.00 4.20
261 262 6.042552 GTGAGAGATAAGGATGAATGAGGGAA 59.957 42.308 0.00 0.00 0.00 3.97
262 263 6.269538 TGAGAGATAAGGATGAATGAGGGAAG 59.730 42.308 0.00 0.00 0.00 3.46
263 264 5.547276 AGAGATAAGGATGAATGAGGGAAGG 59.453 44.000 0.00 0.00 0.00 3.46
264 265 5.230759 AGATAAGGATGAATGAGGGAAGGT 58.769 41.667 0.00 0.00 0.00 3.50
265 266 3.941704 AAGGATGAATGAGGGAAGGTC 57.058 47.619 0.00 0.00 0.00 3.85
266 267 3.142579 AGGATGAATGAGGGAAGGTCT 57.857 47.619 0.00 0.00 0.00 3.85
267 268 3.468850 AGGATGAATGAGGGAAGGTCTT 58.531 45.455 0.00 0.00 0.00 3.01
268 269 4.635473 AGGATGAATGAGGGAAGGTCTTA 58.365 43.478 0.00 0.00 0.00 2.10
269 270 5.230759 AGGATGAATGAGGGAAGGTCTTAT 58.769 41.667 0.00 0.00 0.00 1.73
270 271 5.309282 AGGATGAATGAGGGAAGGTCTTATC 59.691 44.000 0.00 0.00 0.00 1.75
271 272 5.309282 GGATGAATGAGGGAAGGTCTTATCT 59.691 44.000 0.00 0.00 0.00 1.98
272 273 5.620738 TGAATGAGGGAAGGTCTTATCTG 57.379 43.478 0.00 0.00 0.00 2.90
273 274 4.141620 TGAATGAGGGAAGGTCTTATCTGC 60.142 45.833 0.00 0.00 0.00 4.26
274 275 2.832838 TGAGGGAAGGTCTTATCTGCA 58.167 47.619 0.00 0.00 0.00 4.41
275 276 3.181329 TGAGGGAAGGTCTTATCTGCAA 58.819 45.455 0.00 0.00 0.00 4.08
276 277 3.587061 TGAGGGAAGGTCTTATCTGCAAA 59.413 43.478 0.00 0.00 0.00 3.68
277 278 4.228210 TGAGGGAAGGTCTTATCTGCAAAT 59.772 41.667 0.00 0.00 0.00 2.32
278 279 4.530875 AGGGAAGGTCTTATCTGCAAATG 58.469 43.478 0.00 0.00 0.00 2.32
279 280 4.018050 AGGGAAGGTCTTATCTGCAAATGT 60.018 41.667 0.00 0.00 0.00 2.71
280 281 4.096984 GGGAAGGTCTTATCTGCAAATGTG 59.903 45.833 0.00 0.00 0.00 3.21
281 282 4.943705 GGAAGGTCTTATCTGCAAATGTGA 59.056 41.667 0.00 0.00 0.00 3.58
282 283 5.415701 GGAAGGTCTTATCTGCAAATGTGAA 59.584 40.000 0.00 0.00 0.00 3.18
283 284 6.404074 GGAAGGTCTTATCTGCAAATGTGAAG 60.404 42.308 0.00 0.00 0.00 3.02
284 285 5.809001 AGGTCTTATCTGCAAATGTGAAGA 58.191 37.500 0.00 0.00 44.02 2.87
285 286 5.879223 AGGTCTTATCTGCAAATGTGAAGAG 59.121 40.000 0.00 0.00 43.08 2.85
286 287 5.877012 GGTCTTATCTGCAAATGTGAAGAGA 59.123 40.000 0.00 0.00 43.08 3.10
287 288 6.036953 GGTCTTATCTGCAAATGTGAAGAGAG 59.963 42.308 0.00 0.63 43.08 3.20
288 289 6.815641 GTCTTATCTGCAAATGTGAAGAGAGA 59.184 38.462 0.00 3.01 43.08 3.10
289 290 7.495279 GTCTTATCTGCAAATGTGAAGAGAGAT 59.505 37.037 11.23 0.00 43.08 2.75
290 291 7.494952 TCTTATCTGCAAATGTGAAGAGAGATG 59.505 37.037 0.00 0.00 43.08 2.90
291 292 3.688185 TCTGCAAATGTGAAGAGAGATGC 59.312 43.478 0.00 0.00 34.14 3.91
292 293 2.417586 TGCAAATGTGAAGAGAGATGCG 59.582 45.455 0.00 0.00 35.40 4.73
293 294 2.223203 GCAAATGTGAAGAGAGATGCGG 60.223 50.000 0.00 0.00 0.00 5.69
294 295 2.322355 AATGTGAAGAGAGATGCGGG 57.678 50.000 0.00 0.00 0.00 6.13
295 296 1.198713 ATGTGAAGAGAGATGCGGGT 58.801 50.000 0.00 0.00 0.00 5.28
296 297 1.847328 TGTGAAGAGAGATGCGGGTA 58.153 50.000 0.00 0.00 0.00 3.69
297 298 2.388735 TGTGAAGAGAGATGCGGGTAT 58.611 47.619 0.00 0.00 0.00 2.73
298 299 2.362397 TGTGAAGAGAGATGCGGGTATC 59.638 50.000 0.00 0.00 0.00 2.24
299 300 2.625790 GTGAAGAGAGATGCGGGTATCT 59.374 50.000 0.00 0.00 40.02 1.98
300 301 3.821600 GTGAAGAGAGATGCGGGTATCTA 59.178 47.826 0.00 0.00 37.53 1.98
301 302 4.461081 GTGAAGAGAGATGCGGGTATCTAT 59.539 45.833 0.00 0.00 37.53 1.98
302 303 5.047660 GTGAAGAGAGATGCGGGTATCTATT 60.048 44.000 0.00 0.00 37.53 1.73
303 304 5.540337 TGAAGAGAGATGCGGGTATCTATTT 59.460 40.000 0.00 0.00 37.53 1.40
304 305 6.719829 TGAAGAGAGATGCGGGTATCTATTTA 59.280 38.462 0.00 0.00 37.53 1.40
305 306 6.518208 AGAGAGATGCGGGTATCTATTTAC 57.482 41.667 0.00 0.00 37.53 2.01
306 307 6.010850 AGAGAGATGCGGGTATCTATTTACA 58.989 40.000 0.00 0.00 37.53 2.41
307 308 6.493802 AGAGAGATGCGGGTATCTATTTACAA 59.506 38.462 0.00 0.00 37.53 2.41
308 309 7.015292 AGAGAGATGCGGGTATCTATTTACAAA 59.985 37.037 0.00 0.00 37.53 2.83
309 310 7.506114 AGAGATGCGGGTATCTATTTACAAAA 58.494 34.615 0.00 0.00 37.53 2.44
310 311 8.157476 AGAGATGCGGGTATCTATTTACAAAAT 58.843 33.333 0.00 0.00 37.53 1.82
311 312 8.691661 AGATGCGGGTATCTATTTACAAAATT 57.308 30.769 0.00 0.00 35.70 1.82
312 313 9.787435 AGATGCGGGTATCTATTTACAAAATTA 57.213 29.630 0.00 0.00 35.70 1.40
315 316 9.562408 TGCGGGTATCTATTTACAAAATTATCA 57.438 29.630 0.00 0.00 0.00 2.15
337 338 8.798748 ATCATAGTTTACTTTCTATTCGTCGG 57.201 34.615 0.00 0.00 0.00 4.79
338 339 7.988737 TCATAGTTTACTTTCTATTCGTCGGA 58.011 34.615 0.00 0.00 0.00 4.55
339 340 8.627403 TCATAGTTTACTTTCTATTCGTCGGAT 58.373 33.333 0.00 0.00 0.00 4.18
340 341 9.888878 CATAGTTTACTTTCTATTCGTCGGATA 57.111 33.333 0.00 0.00 0.00 2.59
350 351 8.516811 TTCTATTCGTCGGATATAAAAGAAGC 57.483 34.615 0.00 0.00 0.00 3.86
351 352 5.824243 ATTCGTCGGATATAAAAGAAGCG 57.176 39.130 0.00 0.00 0.00 4.68
352 353 3.635331 TCGTCGGATATAAAAGAAGCGG 58.365 45.455 0.00 0.00 0.00 5.52
353 354 3.067180 TCGTCGGATATAAAAGAAGCGGT 59.933 43.478 0.00 0.00 0.00 5.68
354 355 3.424529 CGTCGGATATAAAAGAAGCGGTC 59.575 47.826 0.00 0.00 0.00 4.79
355 356 4.618965 GTCGGATATAAAAGAAGCGGTCT 58.381 43.478 0.00 0.00 38.69 3.85
356 357 5.561532 CGTCGGATATAAAAGAAGCGGTCTA 60.562 44.000 0.00 0.00 34.56 2.59
357 358 6.388278 GTCGGATATAAAAGAAGCGGTCTAT 58.612 40.000 0.00 0.00 34.56 1.98
358 359 7.533426 GTCGGATATAAAAGAAGCGGTCTATA 58.467 38.462 0.00 0.00 34.56 1.31
359 360 8.189460 GTCGGATATAAAAGAAGCGGTCTATAT 58.811 37.037 0.00 0.38 34.56 0.86
360 361 8.746530 TCGGATATAAAAGAAGCGGTCTATATT 58.253 33.333 0.00 0.00 34.56 1.28
361 362 8.808529 CGGATATAAAAGAAGCGGTCTATATTG 58.191 37.037 0.00 0.00 34.56 1.90
362 363 9.654663 GGATATAAAAGAAGCGGTCTATATTGT 57.345 33.333 0.00 0.00 34.56 2.71
368 369 8.594881 AAAGAAGCGGTCTATATTGTAAGATG 57.405 34.615 0.00 0.00 34.56 2.90
369 370 7.526142 AGAAGCGGTCTATATTGTAAGATGA 57.474 36.000 0.00 0.00 33.56 2.92
370 371 7.371936 AGAAGCGGTCTATATTGTAAGATGAC 58.628 38.462 0.00 0.00 33.56 3.06
371 372 6.650427 AGCGGTCTATATTGTAAGATGACA 57.350 37.500 0.00 0.00 0.00 3.58
372 373 7.050970 AGCGGTCTATATTGTAAGATGACAA 57.949 36.000 0.00 0.00 43.23 3.18
373 374 7.148641 AGCGGTCTATATTGTAAGATGACAAG 58.851 38.462 0.00 0.00 42.38 3.16
374 375 6.128795 GCGGTCTATATTGTAAGATGACAAGC 60.129 42.308 0.00 0.00 42.38 4.01
375 376 6.923508 CGGTCTATATTGTAAGATGACAAGCA 59.076 38.462 0.00 0.00 42.38 3.91
376 377 7.096023 CGGTCTATATTGTAAGATGACAAGCAC 60.096 40.741 0.00 0.00 42.38 4.40
377 378 7.710907 GGTCTATATTGTAAGATGACAAGCACA 59.289 37.037 0.00 0.00 42.38 4.57
378 379 8.543774 GTCTATATTGTAAGATGACAAGCACAC 58.456 37.037 0.00 0.00 42.38 3.82
379 380 6.683974 ATATTGTAAGATGACAAGCACACC 57.316 37.500 0.00 0.00 42.38 4.16
380 381 3.483808 TGTAAGATGACAAGCACACCA 57.516 42.857 0.00 0.00 0.00 4.17
381 382 4.019792 TGTAAGATGACAAGCACACCAT 57.980 40.909 0.00 0.00 0.00 3.55
382 383 4.002982 TGTAAGATGACAAGCACACCATC 58.997 43.478 0.00 0.00 36.56 3.51
383 384 2.865119 AGATGACAAGCACACCATCA 57.135 45.000 0.00 0.00 38.22 3.07
384 385 3.361281 AGATGACAAGCACACCATCAT 57.639 42.857 0.00 0.00 38.22 2.45
385 386 3.276857 AGATGACAAGCACACCATCATC 58.723 45.455 0.00 4.70 43.92 2.92
386 387 2.565046 TGACAAGCACACCATCATCA 57.435 45.000 0.00 0.00 0.00 3.07
387 388 3.076079 TGACAAGCACACCATCATCAT 57.924 42.857 0.00 0.00 0.00 2.45
388 389 3.011818 TGACAAGCACACCATCATCATC 58.988 45.455 0.00 0.00 0.00 2.92
389 390 3.011818 GACAAGCACACCATCATCATCA 58.988 45.455 0.00 0.00 0.00 3.07
390 391 3.423749 ACAAGCACACCATCATCATCAA 58.576 40.909 0.00 0.00 0.00 2.57
391 392 3.192001 ACAAGCACACCATCATCATCAAC 59.808 43.478 0.00 0.00 0.00 3.18
392 393 3.361281 AGCACACCATCATCATCAACT 57.639 42.857 0.00 0.00 0.00 3.16
393 394 3.276857 AGCACACCATCATCATCAACTC 58.723 45.455 0.00 0.00 0.00 3.01
394 395 2.031314 GCACACCATCATCATCAACTCG 59.969 50.000 0.00 0.00 0.00 4.18
395 396 2.610833 CACACCATCATCATCAACTCGG 59.389 50.000 0.00 0.00 0.00 4.63
396 397 2.237143 ACACCATCATCATCAACTCGGT 59.763 45.455 0.00 0.00 0.00 4.69
397 398 3.273434 CACCATCATCATCAACTCGGTT 58.727 45.455 0.00 0.00 0.00 4.44
398 399 3.691118 CACCATCATCATCAACTCGGTTT 59.309 43.478 0.00 0.00 0.00 3.27
399 400 4.156556 CACCATCATCATCAACTCGGTTTT 59.843 41.667 0.00 0.00 0.00 2.43
400 401 4.766891 ACCATCATCATCAACTCGGTTTTT 59.233 37.500 0.00 0.00 0.00 1.94
401 402 5.943416 ACCATCATCATCAACTCGGTTTTTA 59.057 36.000 0.00 0.00 0.00 1.52
402 403 6.603201 ACCATCATCATCAACTCGGTTTTTAT 59.397 34.615 0.00 0.00 0.00 1.40
403 404 7.773224 ACCATCATCATCAACTCGGTTTTTATA 59.227 33.333 0.00 0.00 0.00 0.98
404 405 8.620416 CCATCATCATCAACTCGGTTTTTATAA 58.380 33.333 0.00 0.00 0.00 0.98
405 406 9.655769 CATCATCATCAACTCGGTTTTTATAAG 57.344 33.333 0.00 0.00 0.00 1.73
406 407 9.613428 ATCATCATCAACTCGGTTTTTATAAGA 57.387 29.630 0.00 0.00 0.00 2.10
407 408 9.443323 TCATCATCAACTCGGTTTTTATAAGAA 57.557 29.630 0.00 0.00 0.00 2.52
431 432 3.575256 AGAGATGATCTCAGTGATGGCTC 59.425 47.826 23.17 0.00 45.73 4.70
432 433 3.575256 GAGATGATCTCAGTGATGGCTCT 59.425 47.826 17.16 0.00 42.90 4.09
433 434 3.575256 AGATGATCTCAGTGATGGCTCTC 59.425 47.826 0.00 0.00 35.14 3.20
440 441 1.761198 CAGTGATGGCTCTCTGGATCA 59.239 52.381 0.00 0.00 38.67 2.92
448 449 3.519107 TGGCTCTCTGGATCATGTTACAA 59.481 43.478 0.00 0.00 0.00 2.41
449 450 4.125703 GGCTCTCTGGATCATGTTACAAG 58.874 47.826 0.00 0.00 0.00 3.16
451 452 4.141846 GCTCTCTGGATCATGTTACAAGGA 60.142 45.833 0.00 0.00 0.00 3.36
505 508 0.323451 TAGAGGAACAGCTGGCTCGA 60.323 55.000 19.93 3.47 0.00 4.04
512 515 1.253593 ACAGCTGGCTCGAGACATCA 61.254 55.000 23.99 9.52 29.25 3.07
530 533 4.853142 AGATAGGGACGCCGGCCA 62.853 66.667 23.46 0.00 0.00 5.36
744 753 2.570302 CTCCCCCGAAAGAAGGAAAGTA 59.430 50.000 0.00 0.00 32.76 2.24
745 754 3.187112 TCCCCCGAAAGAAGGAAAGTAT 58.813 45.455 0.00 0.00 0.00 2.12
866 881 1.516423 GGAGGCCTGAAGGTACGAC 59.484 63.158 12.00 0.00 37.57 4.34
981 1010 1.749634 GATTCTTTCTCCTCCGTCCGA 59.250 52.381 0.00 0.00 0.00 4.55
1017 1052 5.245977 TCACCAGATGAAGACATGTAAGACA 59.754 40.000 0.00 0.00 36.82 3.41
1030 1065 1.037493 TAAGACAGTGTCCACGTGCT 58.963 50.000 19.71 0.00 36.20 4.40
1125 1160 0.666913 ACCGCGACAGCTATATTCGT 59.333 50.000 8.23 0.00 42.32 3.85
1129 1164 2.739292 GCGACAGCTATATTCGTTCCA 58.261 47.619 7.71 0.00 41.01 3.53
1248 1284 4.150897 TGTGAGCCACAGAACTAAAGTT 57.849 40.909 4.16 0.00 39.62 2.66
1279 1315 1.892819 CGACATGAGGCTGGTGGACT 61.893 60.000 0.00 0.00 34.86 3.85
1472 1508 1.468520 CAAGAAGCCACATGTTACCGG 59.531 52.381 0.00 0.00 0.00 5.28
1585 1621 3.755378 CAGTTTCATTGTTGGAGGAGAGG 59.245 47.826 0.00 0.00 0.00 3.69
1609 1645 5.336372 GCCATTGAAGCACATAGGTTTGTTA 60.336 40.000 0.00 0.00 38.24 2.41
1627 1663 0.956902 TATCGCTATGCGGTCGCCTA 60.957 55.000 12.94 6.54 44.10 3.93
1755 1791 4.730966 TCTATACTGACTCCTTGCCTAGG 58.269 47.826 3.67 3.67 46.27 3.02
1928 1968 2.570135 CCTCCAGCTTAAGGATGCTTC 58.430 52.381 1.37 0.00 37.44 3.86
2009 2079 7.825331 TCATAGAGGACGTATTGAAGAAGAT 57.175 36.000 0.00 0.00 0.00 2.40
2046 2116 4.276678 TGAAGCATGAGCAGTTATATTGGC 59.723 41.667 0.00 0.00 45.49 4.52
2104 2174 6.529220 AGGGATAATCAGCTCAATGTTAGAC 58.471 40.000 0.00 0.00 0.00 2.59
2172 2242 4.927425 GTGAAAGTCGCACTAATCAACCTA 59.073 41.667 0.00 0.00 33.57 3.08
2236 2306 2.291605 TGGAGTGCTTCTCTGCTACCTA 60.292 50.000 8.78 0.00 42.40 3.08
2240 2310 5.245075 GGAGTGCTTCTCTGCTACCTATAAT 59.755 44.000 8.78 0.00 42.40 1.28
2388 2462 7.813148 CACTTTCTATAAAAGTTCGTCTCCTCA 59.187 37.037 0.58 0.00 38.32 3.86
2412 2486 5.005740 CAGATTTGTGTGATTTCCCTCTCA 58.994 41.667 0.00 0.00 0.00 3.27
2484 2572 1.805945 CCTCGGTAGCGTGACTTGC 60.806 63.158 17.15 0.00 0.00 4.01
2630 2720 1.080638 AGGGATAAAAGGGTGTGGCA 58.919 50.000 0.00 0.00 0.00 4.92
2793 3987 7.658179 CTGAAGCTTACATCAGTTAAACAGA 57.342 36.000 0.00 0.00 36.96 3.41
2794 3988 7.421530 TGAAGCTTACATCAGTTAAACAGAC 57.578 36.000 0.00 0.00 0.00 3.51
2806 4045 1.567504 AAACAGACGTTGTCGGACAG 58.432 50.000 11.14 3.42 39.73 3.51
2814 4053 1.535226 CGTTGTCGGACAGTGAACAGA 60.535 52.381 11.14 0.00 0.00 3.41
2859 4098 6.018180 GGACGTTGATCTTTTACAAGTGAAGT 60.018 38.462 0.00 0.00 0.00 3.01
2873 4112 0.175760 TGAAGTGCATCCTAGCCGTC 59.824 55.000 0.00 0.00 0.00 4.79
2912 4151 4.449068 TGTCGAATTCTTCAGAGAAGTTGC 59.551 41.667 3.52 0.00 44.65 4.17
2920 4159 3.401033 TCAGAGAAGTTGCCGATTTCA 57.599 42.857 0.00 0.00 0.00 2.69
2959 4198 6.544650 AGACAGGAAGTTCAGAGAACTAGTA 58.455 40.000 12.31 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.421002 GCATGGGTCAATTATAATAGGTGTTTT 58.579 33.333 0.00 0.00 0.00 2.43
22 23 7.255451 CGCATGGGTCAATTATAATAGGTGTTT 60.255 37.037 0.68 0.00 0.00 2.83
23 24 6.206634 CGCATGGGTCAATTATAATAGGTGTT 59.793 38.462 0.68 0.00 0.00 3.32
24 25 5.705441 CGCATGGGTCAATTATAATAGGTGT 59.295 40.000 0.68 0.00 0.00 4.16
25 26 5.123820 CCGCATGGGTCAATTATAATAGGTG 59.876 44.000 9.14 0.00 0.00 4.00
26 27 5.253330 CCGCATGGGTCAATTATAATAGGT 58.747 41.667 9.14 0.00 0.00 3.08
27 28 5.818136 CCGCATGGGTCAATTATAATAGG 57.182 43.478 9.14 0.00 0.00 2.57
42 43 4.157607 GGGATTACACCCGCATGG 57.842 61.111 0.00 0.00 40.49 3.66
49 50 6.584185 AGTTTTTACACATGGGATTACACC 57.416 37.500 0.00 0.00 0.00 4.16
50 51 9.567848 CAATAGTTTTTACACATGGGATTACAC 57.432 33.333 0.00 0.00 0.00 2.90
51 52 9.303116 ACAATAGTTTTTACACATGGGATTACA 57.697 29.630 0.00 0.00 0.00 2.41
56 57 9.747898 AGATAACAATAGTTTTTACACATGGGA 57.252 29.630 0.00 0.00 39.15 4.37
58 59 9.702726 CGAGATAACAATAGTTTTTACACATGG 57.297 33.333 0.00 0.00 39.15 3.66
61 62 9.917129 TCTCGAGATAACAATAGTTTTTACACA 57.083 29.630 12.08 0.00 39.15 3.72
73 74 9.829507 ATCTTTCATCTTTCTCGAGATAACAAT 57.170 29.630 17.44 3.41 34.68 2.71
77 78 9.973450 CCTTATCTTTCATCTTTCTCGAGATAA 57.027 33.333 17.44 12.15 34.68 1.75
78 79 9.137459 ACCTTATCTTTCATCTTTCTCGAGATA 57.863 33.333 17.44 10.92 34.68 1.98
79 80 7.925483 CACCTTATCTTTCATCTTTCTCGAGAT 59.075 37.037 17.44 0.00 36.84 2.75
80 81 7.122799 TCACCTTATCTTTCATCTTTCTCGAGA 59.877 37.037 12.08 12.08 0.00 4.04
81 82 7.261325 TCACCTTATCTTTCATCTTTCTCGAG 58.739 38.462 5.93 5.93 0.00 4.04
82 83 7.170393 TCACCTTATCTTTCATCTTTCTCGA 57.830 36.000 0.00 0.00 0.00 4.04
83 84 6.478344 CCTCACCTTATCTTTCATCTTTCTCG 59.522 42.308 0.00 0.00 0.00 4.04
84 85 7.560368 TCCTCACCTTATCTTTCATCTTTCTC 58.440 38.462 0.00 0.00 0.00 2.87
85 86 7.365473 CCTCCTCACCTTATCTTTCATCTTTCT 60.365 40.741 0.00 0.00 0.00 2.52
86 87 6.765512 CCTCCTCACCTTATCTTTCATCTTTC 59.234 42.308 0.00 0.00 0.00 2.62
87 88 6.445139 TCCTCCTCACCTTATCTTTCATCTTT 59.555 38.462 0.00 0.00 0.00 2.52
88 89 5.966935 TCCTCCTCACCTTATCTTTCATCTT 59.033 40.000 0.00 0.00 0.00 2.40
89 90 5.533112 TCCTCCTCACCTTATCTTTCATCT 58.467 41.667 0.00 0.00 0.00 2.90
90 91 5.365314 ACTCCTCCTCACCTTATCTTTCATC 59.635 44.000 0.00 0.00 0.00 2.92
91 92 5.130145 CACTCCTCCTCACCTTATCTTTCAT 59.870 44.000 0.00 0.00 0.00 2.57
92 93 4.467795 CACTCCTCCTCACCTTATCTTTCA 59.532 45.833 0.00 0.00 0.00 2.69
93 94 4.141824 CCACTCCTCCTCACCTTATCTTTC 60.142 50.000 0.00 0.00 0.00 2.62
94 95 3.777522 CCACTCCTCCTCACCTTATCTTT 59.222 47.826 0.00 0.00 0.00 2.52
95 96 3.246167 ACCACTCCTCCTCACCTTATCTT 60.246 47.826 0.00 0.00 0.00 2.40
96 97 2.316372 ACCACTCCTCCTCACCTTATCT 59.684 50.000 0.00 0.00 0.00 1.98
97 98 2.432510 CACCACTCCTCCTCACCTTATC 59.567 54.545 0.00 0.00 0.00 1.75
98 99 2.472029 CACCACTCCTCCTCACCTTAT 58.528 52.381 0.00 0.00 0.00 1.73
99 100 1.938585 CACCACTCCTCCTCACCTTA 58.061 55.000 0.00 0.00 0.00 2.69
100 101 1.484444 GCACCACTCCTCCTCACCTT 61.484 60.000 0.00 0.00 0.00 3.50
101 102 1.915769 GCACCACTCCTCCTCACCT 60.916 63.158 0.00 0.00 0.00 4.00
102 103 2.665603 GCACCACTCCTCCTCACC 59.334 66.667 0.00 0.00 0.00 4.02
103 104 2.262915 CGCACCACTCCTCCTCAC 59.737 66.667 0.00 0.00 0.00 3.51
104 105 2.203640 ACGCACCACTCCTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
105 106 2.262915 CACGCACCACTCCTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
106 107 3.314331 CCACGCACCACTCCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
107 108 3.626924 ACCACGCACCACTCCTCC 61.627 66.667 0.00 0.00 0.00 4.30
108 109 2.357517 CACCACGCACCACTCCTC 60.358 66.667 0.00 0.00 0.00 3.71
109 110 3.941188 CCACCACGCACCACTCCT 61.941 66.667 0.00 0.00 0.00 3.69
110 111 4.250305 ACCACCACGCACCACTCC 62.250 66.667 0.00 0.00 0.00 3.85
111 112 2.731691 ATCACCACCACGCACCACTC 62.732 60.000 0.00 0.00 0.00 3.51
112 113 2.337879 AATCACCACCACGCACCACT 62.338 55.000 0.00 0.00 0.00 4.00
113 114 1.896660 AATCACCACCACGCACCAC 60.897 57.895 0.00 0.00 0.00 4.16
114 115 1.896183 CAATCACCACCACGCACCA 60.896 57.895 0.00 0.00 0.00 4.17
115 116 2.625823 CCAATCACCACCACGCACC 61.626 63.158 0.00 0.00 0.00 5.01
116 117 1.896660 ACCAATCACCACCACGCAC 60.897 57.895 0.00 0.00 0.00 5.34
117 118 1.896183 CACCAATCACCACCACGCA 60.896 57.895 0.00 0.00 0.00 5.24
118 119 2.625823 CCACCAATCACCACCACGC 61.626 63.158 0.00 0.00 0.00 5.34
119 120 1.228124 ACCACCAATCACCACCACG 60.228 57.895 0.00 0.00 0.00 4.94
120 121 1.234615 CGACCACCAATCACCACCAC 61.235 60.000 0.00 0.00 0.00 4.16
121 122 1.072332 CGACCACCAATCACCACCA 59.928 57.895 0.00 0.00 0.00 4.17
122 123 1.674322 CCGACCACCAATCACCACC 60.674 63.158 0.00 0.00 0.00 4.61
123 124 0.953960 GTCCGACCACCAATCACCAC 60.954 60.000 0.00 0.00 0.00 4.16
124 125 1.125093 AGTCCGACCACCAATCACCA 61.125 55.000 0.00 0.00 0.00 4.17
125 126 0.673644 CAGTCCGACCACCAATCACC 60.674 60.000 0.00 0.00 0.00 4.02
126 127 0.320374 TCAGTCCGACCACCAATCAC 59.680 55.000 0.00 0.00 0.00 3.06
127 128 0.608130 CTCAGTCCGACCACCAATCA 59.392 55.000 0.00 0.00 0.00 2.57
128 129 0.741221 GCTCAGTCCGACCACCAATC 60.741 60.000 0.00 0.00 0.00 2.67
129 130 1.296715 GCTCAGTCCGACCACCAAT 59.703 57.895 0.00 0.00 0.00 3.16
130 131 2.741092 GCTCAGTCCGACCACCAA 59.259 61.111 0.00 0.00 0.00 3.67
131 132 3.680786 CGCTCAGTCCGACCACCA 61.681 66.667 0.00 0.00 0.00 4.17
132 133 4.436998 CCGCTCAGTCCGACCACC 62.437 72.222 0.00 0.00 0.00 4.61
133 134 3.343788 CTCCGCTCAGTCCGACCAC 62.344 68.421 0.00 0.00 0.00 4.16
134 135 3.062466 CTCCGCTCAGTCCGACCA 61.062 66.667 0.00 0.00 0.00 4.02
135 136 3.827898 CCTCCGCTCAGTCCGACC 61.828 72.222 0.00 0.00 0.00 4.79
136 137 4.500116 GCCTCCGCTCAGTCCGAC 62.500 72.222 0.00 0.00 0.00 4.79
138 139 3.842923 ATGCCTCCGCTCAGTCCG 61.843 66.667 0.00 0.00 35.36 4.79
139 140 2.202987 CATGCCTCCGCTCAGTCC 60.203 66.667 0.00 0.00 35.36 3.85
140 141 2.202987 CCATGCCTCCGCTCAGTC 60.203 66.667 0.00 0.00 35.36 3.51
141 142 1.841302 TTTCCATGCCTCCGCTCAGT 61.841 55.000 0.00 0.00 35.36 3.41
142 143 0.465097 ATTTCCATGCCTCCGCTCAG 60.465 55.000 0.00 0.00 35.36 3.35
143 144 0.749091 CATTTCCATGCCTCCGCTCA 60.749 55.000 0.00 0.00 35.36 4.26
144 145 1.450531 CCATTTCCATGCCTCCGCTC 61.451 60.000 0.00 0.00 35.36 5.03
145 146 1.454479 CCATTTCCATGCCTCCGCT 60.454 57.895 0.00 0.00 35.36 5.52
146 147 1.453745 TCCATTTCCATGCCTCCGC 60.454 57.895 0.00 0.00 0.00 5.54
147 148 1.439353 CGTCCATTTCCATGCCTCCG 61.439 60.000 0.00 0.00 0.00 4.63
148 149 1.103398 CCGTCCATTTCCATGCCTCC 61.103 60.000 0.00 0.00 0.00 4.30
149 150 0.394352 ACCGTCCATTTCCATGCCTC 60.394 55.000 0.00 0.00 0.00 4.70
150 151 0.680921 CACCGTCCATTTCCATGCCT 60.681 55.000 0.00 0.00 0.00 4.75
151 152 1.809207 CACCGTCCATTTCCATGCC 59.191 57.895 0.00 0.00 0.00 4.40
152 153 1.139520 GCACCGTCCATTTCCATGC 59.860 57.895 0.00 0.00 0.00 4.06
153 154 0.452987 CAGCACCGTCCATTTCCATG 59.547 55.000 0.00 0.00 0.00 3.66
154 155 0.680921 CCAGCACCGTCCATTTCCAT 60.681 55.000 0.00 0.00 0.00 3.41
155 156 1.303236 CCAGCACCGTCCATTTCCA 60.303 57.895 0.00 0.00 0.00 3.53
156 157 2.700773 GCCAGCACCGTCCATTTCC 61.701 63.158 0.00 0.00 0.00 3.13
157 158 1.926511 CTGCCAGCACCGTCCATTTC 61.927 60.000 0.00 0.00 0.00 2.17
158 159 1.973281 CTGCCAGCACCGTCCATTT 60.973 57.895 0.00 0.00 0.00 2.32
159 160 2.360350 CTGCCAGCACCGTCCATT 60.360 61.111 0.00 0.00 0.00 3.16
179 180 0.174162 GAACAATCTGGCATGGTGGC 59.826 55.000 0.00 0.00 44.03 5.01
180 181 0.452987 CGAACAATCTGGCATGGTGG 59.547 55.000 0.00 0.00 0.00 4.61
181 182 1.399440 CTCGAACAATCTGGCATGGTG 59.601 52.381 0.00 0.00 0.00 4.17
182 183 1.278985 TCTCGAACAATCTGGCATGGT 59.721 47.619 0.00 0.00 0.00 3.55
183 184 1.938577 CTCTCGAACAATCTGGCATGG 59.061 52.381 0.00 0.00 0.00 3.66
184 185 1.938577 CCTCTCGAACAATCTGGCATG 59.061 52.381 0.00 0.00 0.00 4.06
185 186 1.745141 GCCTCTCGAACAATCTGGCAT 60.745 52.381 0.00 0.00 38.79 4.40
186 187 0.391661 GCCTCTCGAACAATCTGGCA 60.392 55.000 0.00 0.00 38.79 4.92
187 188 0.107945 AGCCTCTCGAACAATCTGGC 60.108 55.000 0.00 0.00 39.19 4.85
188 189 2.393271 AAGCCTCTCGAACAATCTGG 57.607 50.000 0.00 0.00 0.00 3.86
189 190 3.594134 AGAAAGCCTCTCGAACAATCTG 58.406 45.455 0.00 0.00 0.00 2.90
190 191 3.971245 AGAAAGCCTCTCGAACAATCT 57.029 42.857 0.00 0.00 0.00 2.40
191 192 5.363979 AAAAGAAAGCCTCTCGAACAATC 57.636 39.130 0.00 0.00 31.02 2.67
192 193 5.774498 AAAAAGAAAGCCTCTCGAACAAT 57.226 34.783 0.00 0.00 31.02 2.71
211 212 8.140677 CAACCTCATTGTTGAGCAATTAAAAA 57.859 30.769 0.00 0.00 46.77 1.94
212 213 7.712264 CAACCTCATTGTTGAGCAATTAAAA 57.288 32.000 0.00 0.00 46.77 1.52
226 227 5.982356 TCCTTATCTCTCACAACCTCATTG 58.018 41.667 0.00 0.00 44.60 2.82
227 228 6.385176 TCATCCTTATCTCTCACAACCTCATT 59.615 38.462 0.00 0.00 0.00 2.57
228 229 5.901853 TCATCCTTATCTCTCACAACCTCAT 59.098 40.000 0.00 0.00 0.00 2.90
229 230 5.272402 TCATCCTTATCTCTCACAACCTCA 58.728 41.667 0.00 0.00 0.00 3.86
230 231 5.860941 TCATCCTTATCTCTCACAACCTC 57.139 43.478 0.00 0.00 0.00 3.85
231 232 6.385176 TCATTCATCCTTATCTCTCACAACCT 59.615 38.462 0.00 0.00 0.00 3.50
232 233 6.586344 TCATTCATCCTTATCTCTCACAACC 58.414 40.000 0.00 0.00 0.00 3.77
233 234 6.705381 CCTCATTCATCCTTATCTCTCACAAC 59.295 42.308 0.00 0.00 0.00 3.32
234 235 6.183361 CCCTCATTCATCCTTATCTCTCACAA 60.183 42.308 0.00 0.00 0.00 3.33
235 236 5.306419 CCCTCATTCATCCTTATCTCTCACA 59.694 44.000 0.00 0.00 0.00 3.58
236 237 5.541868 TCCCTCATTCATCCTTATCTCTCAC 59.458 44.000 0.00 0.00 0.00 3.51
237 238 5.720162 TCCCTCATTCATCCTTATCTCTCA 58.280 41.667 0.00 0.00 0.00 3.27
238 239 6.295802 CCTTCCCTCATTCATCCTTATCTCTC 60.296 46.154 0.00 0.00 0.00 3.20
239 240 5.547276 CCTTCCCTCATTCATCCTTATCTCT 59.453 44.000 0.00 0.00 0.00 3.10
240 241 5.309282 ACCTTCCCTCATTCATCCTTATCTC 59.691 44.000 0.00 0.00 0.00 2.75
241 242 5.230759 ACCTTCCCTCATTCATCCTTATCT 58.769 41.667 0.00 0.00 0.00 1.98
242 243 5.309282 AGACCTTCCCTCATTCATCCTTATC 59.691 44.000 0.00 0.00 0.00 1.75
243 244 5.230759 AGACCTTCCCTCATTCATCCTTAT 58.769 41.667 0.00 0.00 0.00 1.73
244 245 4.635473 AGACCTTCCCTCATTCATCCTTA 58.365 43.478 0.00 0.00 0.00 2.69
245 246 3.468850 AGACCTTCCCTCATTCATCCTT 58.531 45.455 0.00 0.00 0.00 3.36
246 247 3.142579 AGACCTTCCCTCATTCATCCT 57.857 47.619 0.00 0.00 0.00 3.24
247 248 3.941704 AAGACCTTCCCTCATTCATCC 57.058 47.619 0.00 0.00 0.00 3.51
248 249 6.229733 CAGATAAGACCTTCCCTCATTCATC 58.770 44.000 0.00 0.00 0.00 2.92
249 250 5.455899 GCAGATAAGACCTTCCCTCATTCAT 60.456 44.000 0.00 0.00 0.00 2.57
250 251 4.141620 GCAGATAAGACCTTCCCTCATTCA 60.142 45.833 0.00 0.00 0.00 2.57
251 252 4.141620 TGCAGATAAGACCTTCCCTCATTC 60.142 45.833 0.00 0.00 0.00 2.67
252 253 3.782523 TGCAGATAAGACCTTCCCTCATT 59.217 43.478 0.00 0.00 0.00 2.57
253 254 3.387962 TGCAGATAAGACCTTCCCTCAT 58.612 45.455 0.00 0.00 0.00 2.90
254 255 2.832838 TGCAGATAAGACCTTCCCTCA 58.167 47.619 0.00 0.00 0.00 3.86
255 256 3.914426 TTGCAGATAAGACCTTCCCTC 57.086 47.619 0.00 0.00 0.00 4.30
256 257 4.018050 ACATTTGCAGATAAGACCTTCCCT 60.018 41.667 0.00 0.00 0.00 4.20
257 258 4.096984 CACATTTGCAGATAAGACCTTCCC 59.903 45.833 0.00 0.00 0.00 3.97
258 259 4.943705 TCACATTTGCAGATAAGACCTTCC 59.056 41.667 0.00 0.00 0.00 3.46
259 260 6.372659 TCTTCACATTTGCAGATAAGACCTTC 59.627 38.462 0.00 0.00 0.00 3.46
260 261 6.240894 TCTTCACATTTGCAGATAAGACCTT 58.759 36.000 0.00 0.00 0.00 3.50
261 262 5.809001 TCTTCACATTTGCAGATAAGACCT 58.191 37.500 0.00 0.00 0.00 3.85
262 263 5.877012 TCTCTTCACATTTGCAGATAAGACC 59.123 40.000 0.00 0.00 0.00 3.85
263 264 6.815641 TCTCTCTTCACATTTGCAGATAAGAC 59.184 38.462 0.00 0.00 0.00 3.01
264 265 6.939622 TCTCTCTTCACATTTGCAGATAAGA 58.060 36.000 0.00 0.00 0.00 2.10
265 266 7.631822 CATCTCTCTTCACATTTGCAGATAAG 58.368 38.462 0.00 0.00 0.00 1.73
266 267 6.037940 GCATCTCTCTTCACATTTGCAGATAA 59.962 38.462 0.00 0.00 0.00 1.75
267 268 5.526479 GCATCTCTCTTCACATTTGCAGATA 59.474 40.000 0.00 0.00 0.00 1.98
268 269 4.335874 GCATCTCTCTTCACATTTGCAGAT 59.664 41.667 0.00 0.00 0.00 2.90
269 270 3.688185 GCATCTCTCTTCACATTTGCAGA 59.312 43.478 0.00 0.00 0.00 4.26
270 271 3.485381 CGCATCTCTCTTCACATTTGCAG 60.485 47.826 0.00 0.00 0.00 4.41
271 272 2.417586 CGCATCTCTCTTCACATTTGCA 59.582 45.455 0.00 0.00 0.00 4.08
272 273 2.223203 CCGCATCTCTCTTCACATTTGC 60.223 50.000 0.00 0.00 0.00 3.68
273 274 2.353889 CCCGCATCTCTCTTCACATTTG 59.646 50.000 0.00 0.00 0.00 2.32
274 275 2.026822 ACCCGCATCTCTCTTCACATTT 60.027 45.455 0.00 0.00 0.00 2.32
275 276 1.556911 ACCCGCATCTCTCTTCACATT 59.443 47.619 0.00 0.00 0.00 2.71
276 277 1.198713 ACCCGCATCTCTCTTCACAT 58.801 50.000 0.00 0.00 0.00 3.21
277 278 1.847328 TACCCGCATCTCTCTTCACA 58.153 50.000 0.00 0.00 0.00 3.58
278 279 2.625790 AGATACCCGCATCTCTCTTCAC 59.374 50.000 0.00 0.00 28.83 3.18
279 280 2.950781 AGATACCCGCATCTCTCTTCA 58.049 47.619 0.00 0.00 28.83 3.02
280 281 5.652994 AATAGATACCCGCATCTCTCTTC 57.347 43.478 0.00 0.00 36.63 2.87
281 282 6.493802 TGTAAATAGATACCCGCATCTCTCTT 59.506 38.462 0.00 0.00 36.63 2.85
282 283 6.010850 TGTAAATAGATACCCGCATCTCTCT 58.989 40.000 0.00 0.00 36.63 3.10
283 284 6.268825 TGTAAATAGATACCCGCATCTCTC 57.731 41.667 0.00 0.00 36.63 3.20
284 285 6.665992 TTGTAAATAGATACCCGCATCTCT 57.334 37.500 0.00 0.00 36.63 3.10
285 286 7.724305 TTTTGTAAATAGATACCCGCATCTC 57.276 36.000 0.00 0.00 36.63 2.75
286 287 8.691661 AATTTTGTAAATAGATACCCGCATCT 57.308 30.769 0.00 0.00 38.76 2.90
289 290 9.562408 TGATAATTTTGTAAATAGATACCCGCA 57.438 29.630 0.00 0.00 0.00 5.69
311 312 9.888878 CCGACGAATAGAAAGTAAACTATGATA 57.111 33.333 0.00 0.00 30.98 2.15
312 313 8.627403 TCCGACGAATAGAAAGTAAACTATGAT 58.373 33.333 0.00 0.00 30.98 2.45
313 314 7.988737 TCCGACGAATAGAAAGTAAACTATGA 58.011 34.615 0.00 0.00 30.98 2.15
314 315 8.798748 ATCCGACGAATAGAAAGTAAACTATG 57.201 34.615 0.00 0.00 30.98 2.23
324 325 8.975439 GCTTCTTTTATATCCGACGAATAGAAA 58.025 33.333 0.00 0.00 0.00 2.52
325 326 7.325338 CGCTTCTTTTATATCCGACGAATAGAA 59.675 37.037 0.00 0.00 0.00 2.10
326 327 6.800408 CGCTTCTTTTATATCCGACGAATAGA 59.200 38.462 0.00 0.00 0.00 1.98
327 328 6.033619 CCGCTTCTTTTATATCCGACGAATAG 59.966 42.308 0.00 0.00 0.00 1.73
328 329 5.860182 CCGCTTCTTTTATATCCGACGAATA 59.140 40.000 0.00 0.00 0.00 1.75
329 330 4.684703 CCGCTTCTTTTATATCCGACGAAT 59.315 41.667 0.00 0.00 0.00 3.34
330 331 4.046462 CCGCTTCTTTTATATCCGACGAA 58.954 43.478 0.00 0.00 0.00 3.85
331 332 3.067180 ACCGCTTCTTTTATATCCGACGA 59.933 43.478 0.00 0.00 0.00 4.20
332 333 3.378339 ACCGCTTCTTTTATATCCGACG 58.622 45.455 0.00 0.00 0.00 5.12
333 334 4.618965 AGACCGCTTCTTTTATATCCGAC 58.381 43.478 0.00 0.00 0.00 4.79
334 335 4.931661 AGACCGCTTCTTTTATATCCGA 57.068 40.909 0.00 0.00 0.00 4.55
335 336 8.808529 CAATATAGACCGCTTCTTTTATATCCG 58.191 37.037 0.00 0.00 35.55 4.18
336 337 9.654663 ACAATATAGACCGCTTCTTTTATATCC 57.345 33.333 0.00 0.00 35.55 2.59
342 343 9.046296 CATCTTACAATATAGACCGCTTCTTTT 57.954 33.333 0.00 0.00 35.55 2.27
343 344 8.421784 TCATCTTACAATATAGACCGCTTCTTT 58.578 33.333 0.00 0.00 35.55 2.52
344 345 7.868415 GTCATCTTACAATATAGACCGCTTCTT 59.132 37.037 0.00 0.00 35.55 2.52
345 346 7.014326 TGTCATCTTACAATATAGACCGCTTCT 59.986 37.037 0.00 0.00 38.51 2.85
346 347 7.145985 TGTCATCTTACAATATAGACCGCTTC 58.854 38.462 0.00 0.00 0.00 3.86
347 348 7.050970 TGTCATCTTACAATATAGACCGCTT 57.949 36.000 0.00 0.00 0.00 4.68
348 349 6.650427 TGTCATCTTACAATATAGACCGCT 57.350 37.500 0.00 0.00 0.00 5.52
349 350 6.128795 GCTTGTCATCTTACAATATAGACCGC 60.129 42.308 0.00 0.00 38.61 5.68
350 351 6.923508 TGCTTGTCATCTTACAATATAGACCG 59.076 38.462 0.00 0.00 38.61 4.79
351 352 7.710907 TGTGCTTGTCATCTTACAATATAGACC 59.289 37.037 0.00 0.00 38.61 3.85
352 353 8.543774 GTGTGCTTGTCATCTTACAATATAGAC 58.456 37.037 0.00 0.00 38.61 2.59
353 354 7.710907 GGTGTGCTTGTCATCTTACAATATAGA 59.289 37.037 0.00 0.00 38.61 1.98
354 355 7.495606 TGGTGTGCTTGTCATCTTACAATATAG 59.504 37.037 0.00 0.00 38.61 1.31
355 356 7.334858 TGGTGTGCTTGTCATCTTACAATATA 58.665 34.615 0.00 0.00 38.61 0.86
356 357 6.179756 TGGTGTGCTTGTCATCTTACAATAT 58.820 36.000 0.00 0.00 38.61 1.28
357 358 5.555966 TGGTGTGCTTGTCATCTTACAATA 58.444 37.500 0.00 0.00 38.61 1.90
358 359 4.397420 TGGTGTGCTTGTCATCTTACAAT 58.603 39.130 0.00 0.00 38.61 2.71
359 360 3.814625 TGGTGTGCTTGTCATCTTACAA 58.185 40.909 0.00 0.00 37.75 2.41
360 361 3.483808 TGGTGTGCTTGTCATCTTACA 57.516 42.857 0.00 0.00 0.00 2.41
361 362 4.002982 TGATGGTGTGCTTGTCATCTTAC 58.997 43.478 0.00 0.00 37.48 2.34
362 363 4.284829 TGATGGTGTGCTTGTCATCTTA 57.715 40.909 0.00 0.00 37.48 2.10
363 364 3.144657 TGATGGTGTGCTTGTCATCTT 57.855 42.857 0.00 0.00 37.48 2.40
364 365 2.865119 TGATGGTGTGCTTGTCATCT 57.135 45.000 0.00 0.00 37.48 2.90
365 366 3.011818 TGATGATGGTGTGCTTGTCATC 58.988 45.455 6.69 6.69 43.29 2.92
366 367 3.076079 TGATGATGGTGTGCTTGTCAT 57.924 42.857 0.00 0.00 32.59 3.06
367 368 2.565046 TGATGATGGTGTGCTTGTCA 57.435 45.000 0.00 0.00 0.00 3.58
368 369 3.011818 TGATGATGATGGTGTGCTTGTC 58.988 45.455 0.00 0.00 0.00 3.18
369 370 3.076079 TGATGATGATGGTGTGCTTGT 57.924 42.857 0.00 0.00 0.00 3.16
370 371 3.442625 AGTTGATGATGATGGTGTGCTTG 59.557 43.478 0.00 0.00 0.00 4.01
371 372 3.693085 GAGTTGATGATGATGGTGTGCTT 59.307 43.478 0.00 0.00 0.00 3.91
372 373 3.276857 GAGTTGATGATGATGGTGTGCT 58.723 45.455 0.00 0.00 0.00 4.40
373 374 2.031314 CGAGTTGATGATGATGGTGTGC 59.969 50.000 0.00 0.00 0.00 4.57
374 375 2.610833 CCGAGTTGATGATGATGGTGTG 59.389 50.000 0.00 0.00 0.00 3.82
375 376 2.237143 ACCGAGTTGATGATGATGGTGT 59.763 45.455 0.00 0.00 0.00 4.16
376 377 2.910199 ACCGAGTTGATGATGATGGTG 58.090 47.619 0.00 0.00 0.00 4.17
377 378 3.634397 AACCGAGTTGATGATGATGGT 57.366 42.857 0.00 0.00 0.00 3.55
378 379 4.970662 AAAACCGAGTTGATGATGATGG 57.029 40.909 0.00 0.00 0.00 3.51
379 380 9.655769 CTTATAAAAACCGAGTTGATGATGATG 57.344 33.333 0.00 0.00 0.00 3.07
380 381 9.613428 TCTTATAAAAACCGAGTTGATGATGAT 57.387 29.630 0.00 0.00 0.00 2.45
381 382 9.443323 TTCTTATAAAAACCGAGTTGATGATGA 57.557 29.630 0.00 0.00 0.00 2.92
402 403 9.022884 CCATCACTGAGATCATCTCTATTCTTA 57.977 37.037 15.89 0.00 43.73 2.10
403 404 7.525859 GCCATCACTGAGATCATCTCTATTCTT 60.526 40.741 15.89 0.00 43.73 2.52
404 405 6.071221 GCCATCACTGAGATCATCTCTATTCT 60.071 42.308 15.89 0.00 43.73 2.40
405 406 6.071221 AGCCATCACTGAGATCATCTCTATTC 60.071 42.308 15.89 0.00 43.73 1.75
406 407 5.781306 AGCCATCACTGAGATCATCTCTATT 59.219 40.000 15.89 0.00 43.73 1.73
407 408 5.335261 AGCCATCACTGAGATCATCTCTAT 58.665 41.667 15.89 0.95 43.73 1.98
408 409 4.738685 AGCCATCACTGAGATCATCTCTA 58.261 43.478 15.89 1.86 43.73 2.43
409 410 3.575256 GAGCCATCACTGAGATCATCTCT 59.425 47.826 15.89 0.00 43.73 3.10
410 411 3.575256 AGAGCCATCACTGAGATCATCTC 59.425 47.826 7.83 7.83 43.65 2.75
411 412 3.575256 GAGAGCCATCACTGAGATCATCT 59.425 47.826 0.00 0.00 33.72 2.90
412 413 3.575256 AGAGAGCCATCACTGAGATCATC 59.425 47.826 0.00 0.00 33.72 2.92
420 421 1.761198 TGATCCAGAGAGCCATCACTG 59.239 52.381 0.00 0.00 42.04 3.66
421 422 2.171568 TGATCCAGAGAGCCATCACT 57.828 50.000 0.00 0.00 0.00 3.41
431 432 6.351711 TGATTCCTTGTAACATGATCCAGAG 58.648 40.000 0.00 0.00 0.00 3.35
432 433 6.312141 TGATTCCTTGTAACATGATCCAGA 57.688 37.500 0.00 0.00 0.00 3.86
433 434 6.769341 TGATGATTCCTTGTAACATGATCCAG 59.231 38.462 0.00 0.00 0.00 3.86
440 441 7.415989 GCACAAGATGATGATTCCTTGTAACAT 60.416 37.037 0.00 0.00 44.97 2.71
448 449 3.552875 CAGGCACAAGATGATGATTCCT 58.447 45.455 0.00 0.00 0.00 3.36
449 450 2.621998 CCAGGCACAAGATGATGATTCC 59.378 50.000 0.00 0.00 0.00 3.01
451 452 3.552875 CTCCAGGCACAAGATGATGATT 58.447 45.455 0.00 0.00 0.00 2.57
505 508 1.689273 GGCGTCCCTATCTTGATGTCT 59.311 52.381 0.00 0.00 0.00 3.41
512 515 3.547513 GGCCGGCGTCCCTATCTT 61.548 66.667 22.54 0.00 0.00 2.40
617 622 6.207025 TCAAAAACGGAAAAGGATATCGGAAA 59.793 34.615 0.00 0.00 0.00 3.13
673 682 2.963599 TGGGGTTTAGTTTCTGGTCC 57.036 50.000 0.00 0.00 0.00 4.46
744 753 8.507249 CCTCGTTTTCTTTTTGATGAGAACTAT 58.493 33.333 0.00 0.00 32.01 2.12
745 754 7.519970 GCCTCGTTTTCTTTTTGATGAGAACTA 60.520 37.037 0.00 0.00 32.01 2.24
959 986 1.477295 GGACGGAGGAGAAAGAATCGT 59.523 52.381 0.00 0.00 0.00 3.73
981 1010 5.768980 TCATCTGGTGAGAGGAAAATTCT 57.231 39.130 0.00 0.00 36.09 2.40
1017 1052 3.626924 GGGGAGCACGTGGACACT 61.627 66.667 18.88 5.28 0.00 3.55
1030 1065 1.690633 GAGCATCCTCCAGTGGGGA 60.691 63.158 11.89 16.00 45.89 4.81
1125 1160 2.147958 CCGACGGTGAAAAATCTGGAA 58.852 47.619 5.48 0.00 0.00 3.53
1129 1164 2.159181 CGCCGACGGTGAAAAATCT 58.841 52.632 22.98 0.00 34.74 2.40
1150 1185 0.325296 AAGGAGATGGCCCAGTCGTA 60.325 55.000 0.00 0.00 0.00 3.43
1257 1293 1.672030 CACCAGCCTCATGTCGCAA 60.672 57.895 9.00 0.00 0.00 4.85
1279 1315 1.466856 AACGAGCATCCGGTGTACTA 58.533 50.000 0.00 0.00 0.00 1.82
1585 1621 3.056607 ACAAACCTATGTGCTTCAATGGC 60.057 43.478 0.00 0.00 30.82 4.40
1627 1663 6.190587 ACCCATAGAGCTCTGCTTTAAAAAT 58.809 36.000 26.78 5.23 39.88 1.82
1755 1791 0.605589 CCATCTCAGTATCCTCGCCC 59.394 60.000 0.00 0.00 0.00 6.13
1778 1814 2.303022 TCAGCAGCCACTAGTAAAAGCT 59.697 45.455 0.00 0.36 0.00 3.74
1849 1885 3.392616 ACAGTGTCCTTGTTCAGATCCTT 59.607 43.478 0.00 0.00 0.00 3.36
1928 1968 6.992715 ACCTGATAATTCGATAAACTGAAGGG 59.007 38.462 0.00 0.00 0.00 3.95
2213 2283 1.134848 GTAGCAGAGAAGCACTCCAGG 60.135 57.143 7.20 0.00 45.96 4.45
2388 2462 4.990526 AGAGGGAAATCACACAAATCTGT 58.009 39.130 0.00 0.00 35.63 3.41
2484 2572 9.185192 GTTCTTTCTCTTGTTTTACAATGATGG 57.815 33.333 0.00 0.00 37.48 3.51
2716 2837 5.329493 GTTCACGCAGTTAACTGAAGTTTT 58.671 37.500 34.43 12.09 46.59 2.43
2717 2838 4.905269 GTTCACGCAGTTAACTGAAGTTT 58.095 39.130 34.43 13.01 46.59 2.66
2718 2839 4.531659 GTTCACGCAGTTAACTGAAGTT 57.468 40.909 34.43 14.63 46.59 2.66
2725 2846 1.529865 GGGACAGTTCACGCAGTTAAC 59.470 52.381 0.00 0.00 44.14 2.01
2726 2847 1.541670 GGGGACAGTTCACGCAGTTAA 60.542 52.381 0.00 0.00 41.61 2.01
2728 2849 1.227853 GGGGACAGTTCACGCAGTT 60.228 57.895 0.00 0.00 41.61 3.16
2730 2851 2.358737 GGGGGACAGTTCACGCAG 60.359 66.667 0.00 0.00 38.02 5.18
2731 2852 4.308458 CGGGGGACAGTTCACGCA 62.308 66.667 0.00 0.00 38.00 5.24
2733 2854 3.818121 TTGCGGGGGACAGTTCACG 62.818 63.158 0.00 0.00 0.00 4.35
2791 3985 0.742505 TTCACTGTCCGACAACGTCT 59.257 50.000 2.19 0.00 37.88 4.18
2792 3986 0.850856 GTTCACTGTCCGACAACGTC 59.149 55.000 2.19 0.00 37.88 4.34
2793 3987 0.173935 TGTTCACTGTCCGACAACGT 59.826 50.000 2.19 0.00 37.88 3.99
2794 3988 0.852777 CTGTTCACTGTCCGACAACG 59.147 55.000 2.19 0.00 39.43 4.10
2806 4045 0.322008 CCAAGGGCTCCTCTGTTCAC 60.322 60.000 0.00 0.00 30.89 3.18
2814 4053 1.229209 TCGAAGACCAAGGGCTCCT 60.229 57.895 0.00 0.00 33.87 3.69
2836 4075 6.715464 CACTTCACTTGTAAAAGATCAACGT 58.285 36.000 0.00 0.00 0.00 3.99
2859 4098 2.758327 ACGGACGGCTAGGATGCA 60.758 61.111 0.00 0.00 34.04 3.96
2873 4112 1.732732 CGACAGCTACCAGAAAGACGG 60.733 57.143 0.00 0.00 0.00 4.79
2920 4159 2.301296 CCTGTCTCTGAACACACCTGAT 59.699 50.000 0.00 0.00 0.00 2.90
2959 4198 4.983671 TGTTCAGAGTATGCGTCAGTAT 57.016 40.909 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.