Multiple sequence alignment - TraesCS5A01G461900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G461900 chr5A 100.000 4587 0 0 1 4587 642653702 642658288 0.000000e+00 8471.0
1 TraesCS5A01G461900 chr5A 81.105 561 72 17 1 533 642647080 642647634 7.100000e-113 418.0
2 TraesCS5A01G461900 chr5A 90.625 96 9 0 1743 1838 642537742 642537837 1.340000e-25 128.0
3 TraesCS5A01G461900 chr5A 82.051 117 13 7 3732 3840 642505012 642505128 4.890000e-15 93.5
4 TraesCS5A01G461900 chr5D 93.398 3908 143 25 388 4185 514456832 514460734 0.000000e+00 5681.0
5 TraesCS5A01G461900 chr5D 87.407 270 33 1 1743 2011 514519494 514519763 4.460000e-80 309.0
6 TraesCS5A01G461900 chr5D 88.268 179 18 2 3321 3498 514517173 514517349 1.290000e-50 211.0
7 TraesCS5A01G461900 chr5D 78.313 166 10 6 3669 3808 514517565 514517730 2.940000e-12 84.2
8 TraesCS5A01G461900 chr5D 89.231 65 7 0 3232 3296 514432801 514432737 1.060000e-11 82.4
9 TraesCS5A01G461900 chr5B 93.233 2187 64 26 1 2127 646475887 646478049 0.000000e+00 3142.0
10 TraesCS5A01G461900 chr5B 94.174 944 35 8 1068 2007 645545948 645545021 0.000000e+00 1421.0
11 TraesCS5A01G461900 chr5B 90.490 999 48 13 1297 2291 645942539 645941584 0.000000e+00 1275.0
12 TraesCS5A01G461900 chr5B 92.982 798 33 13 2122 2897 646478160 646478956 0.000000e+00 1142.0
13 TraesCS5A01G461900 chr5B 90.824 752 26 15 2989 3729 646478958 646479677 0.000000e+00 966.0
14 TraesCS5A01G461900 chr5B 91.599 619 48 4 694 1310 645945207 645944591 0.000000e+00 852.0
15 TraesCS5A01G461900 chr5B 85.961 406 38 6 3775 4165 646479815 646480216 2.550000e-112 416.0
16 TraesCS5A01G461900 chr5B 97.119 243 4 2 768 1008 645546223 645545982 1.540000e-109 407.0
17 TraesCS5A01G461900 chr5B 94.444 252 9 4 2444 2691 645924357 645924107 2.590000e-102 383.0
18 TraesCS5A01G461900 chr5B 84.197 386 45 10 1744 2126 646631029 646631401 1.210000e-95 361.0
19 TraesCS5A01G461900 chr5B 94.545 220 10 2 2683 2901 645923827 645923609 5.680000e-89 339.0
20 TraesCS5A01G461900 chr5B 87.333 300 23 5 3594 3879 645544763 645544465 3.420000e-86 329.0
21 TraesCS5A01G461900 chr5B 94.444 162 6 2 2005 2166 645544927 645544769 3.540000e-61 246.0
22 TraesCS5A01G461900 chr5B 86.486 185 25 0 1743 1927 645989098 645988914 2.160000e-48 204.0
23 TraesCS5A01G461900 chr5B 89.441 161 17 0 3338 3498 646629020 646629180 2.160000e-48 204.0
24 TraesCS5A01G461900 chr5B 91.667 84 7 0 3910 3993 647347480 647347563 2.900000e-22 117.0
25 TraesCS5A01G461900 chr5B 83.217 143 7 1 2276 2401 645924495 645924353 1.040000e-21 115.0
26 TraesCS5A01G461900 chr5B 95.238 63 3 0 3069 3131 645923599 645923537 2.920000e-17 100.0
27 TraesCS5A01G461900 chr5B 100.000 48 0 0 691 738 645546274 645546227 6.320000e-14 89.8
28 TraesCS5A01G461900 chr5B 100.000 47 0 0 3764 3810 645920681 645920635 2.270000e-13 87.9
29 TraesCS5A01G461900 chr5B 100.000 37 0 0 2173 2209 435766672 435766636 8.230000e-08 69.4
30 TraesCS5A01G461900 chr5B 100.000 31 0 0 3231 3261 646268671 646268701 1.780000e-04 58.4
31 TraesCS5A01G461900 chr2B 91.272 401 33 2 4188 4587 95489482 95489881 3.120000e-151 545.0
32 TraesCS5A01G461900 chr2B 86.520 408 50 5 4183 4587 761633575 761633170 1.170000e-120 444.0
33 TraesCS5A01G461900 chr2B 86.241 407 51 5 4183 4586 761576209 761575805 1.960000e-118 436.0
34 TraesCS5A01G461900 chr7D 89.362 376 32 6 4218 4587 46413444 46413817 2.500000e-127 466.0
35 TraesCS5A01G461900 chr7D 85.644 404 55 3 4186 4587 599946770 599946368 5.490000e-114 422.0
36 TraesCS5A01G461900 chr6D 85.990 414 42 11 4185 4587 433620295 433619887 3.280000e-116 429.0
37 TraesCS5A01G461900 chr1A 84.938 405 52 7 4186 4584 535710520 535710921 7.150000e-108 401.0
38 TraesCS5A01G461900 chr4A 84.406 404 58 5 4186 4586 702970241 702969840 4.300000e-105 392.0
39 TraesCS5A01G461900 chr4A 84.158 404 59 5 4186 4586 703035503 703035102 2.000000e-103 387.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G461900 chr5A 642653702 642658288 4586 False 8471.00 8471 100.000000 1 4587 1 chr5A.!!$F4 4586
1 TraesCS5A01G461900 chr5A 642647080 642647634 554 False 418.00 418 81.105000 1 533 1 chr5A.!!$F3 532
2 TraesCS5A01G461900 chr5D 514456832 514460734 3902 False 5681.00 5681 93.398000 388 4185 1 chr5D.!!$F1 3797
3 TraesCS5A01G461900 chr5D 514517173 514519763 2590 False 201.40 309 84.662667 1743 3808 3 chr5D.!!$F2 2065
4 TraesCS5A01G461900 chr5B 646475887 646480216 4329 False 1416.50 3142 90.750000 1 4165 4 chr5B.!!$F3 4164
5 TraesCS5A01G461900 chr5B 645941584 645945207 3623 True 1063.50 1275 91.044500 694 2291 2 chr5B.!!$R5 1597
6 TraesCS5A01G461900 chr5B 645544465 645546274 1809 True 498.56 1421 94.614000 691 3879 5 chr5B.!!$R3 3188
7 TraesCS5A01G461900 chr5B 646629020 646631401 2381 False 282.50 361 86.819000 1744 3498 2 chr5B.!!$F4 1754
8 TraesCS5A01G461900 chr5B 645920635 645924495 3860 True 204.98 383 93.488800 2276 3810 5 chr5B.!!$R4 1534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 117 5.251764 ACAGCAAAGAGACAATAGATGCTT 58.748 37.500 0.00 0.0 40.4 3.91 F
1240 1346 1.417517 TGCAGGTTCCAGCGATATCAT 59.582 47.619 3.12 0.0 0.0 2.45 F
2030 4312 0.478072 TGTTGGATGTTGGCTCAGGT 59.522 50.000 0.00 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 3602 0.034896 CTCCGGTAACCACTGCAACT 59.965 55.0 0.00 0.0 0.0 3.16 R
3089 5810 0.764369 AGAACTCCACCAGTCCAGCA 60.764 55.0 0.00 0.0 32.3 4.41 R
3741 8709 2.092429 TCTGTTCCCATAATCAGGCCAC 60.092 50.0 5.01 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 9.103861 CAGTTGTTTGGGTAATGTGTAATTTTT 57.896 29.630 0.00 0.00 0.00 1.94
115 117 5.251764 ACAGCAAAGAGACAATAGATGCTT 58.748 37.500 0.00 0.00 40.40 3.91
348 358 7.028962 TGAAATTTTATGGTGCAATCTTCGAG 58.971 34.615 0.00 0.00 0.00 4.04
370 383 6.409185 CGAGCGTTCATTTAATTTTGAGCTAG 59.591 38.462 0.00 0.00 0.00 3.42
647 688 7.770201 ACATATGCAGCACATGTTGTAAAATA 58.230 30.769 13.81 0.00 40.06 1.40
648 689 8.415553 ACATATGCAGCACATGTTGTAAAATAT 58.584 29.630 13.81 0.00 40.06 1.28
649 690 9.896263 CATATGCAGCACATGTTGTAAAATATA 57.104 29.630 5.41 0.00 40.06 0.86
1240 1346 1.417517 TGCAGGTTCCAGCGATATCAT 59.582 47.619 3.12 0.00 0.00 2.45
1427 3602 4.666253 GCACAGCCTCAAGCCCCA 62.666 66.667 0.00 0.00 45.47 4.96
1716 3893 5.246203 AGTGTGCAGAGAGGTGAGTAAAATA 59.754 40.000 0.00 0.00 0.00 1.40
1787 3972 5.973565 GCATACAAGTGCATTTTACCTCATC 59.026 40.000 0.00 0.00 44.43 2.92
1819 4004 1.538047 TGCCATGCTTGTCTTCCTTC 58.462 50.000 0.00 0.00 0.00 3.46
1996 4182 0.994995 CAATTCTCCGAGTGAGTGCG 59.005 55.000 0.00 0.00 42.12 5.34
2030 4312 0.478072 TGTTGGATGTTGGCTCAGGT 59.522 50.000 0.00 0.00 0.00 4.00
2082 4368 2.508526 GTGAACAATGCAGGTTCTCCT 58.491 47.619 25.42 0.11 43.84 3.69
2168 4570 2.297033 CCTTGACAGTGGGTTTTGATGG 59.703 50.000 0.00 0.00 0.00 3.51
2321 4725 1.737793 GTTCACTTGGCCTCCGTAATG 59.262 52.381 3.32 0.00 0.00 1.90
2665 5090 3.825014 CCAATGCAGCCTAGAATAAGCAT 59.175 43.478 0.00 0.00 43.79 3.79
2697 5409 5.990120 AAAGTGCTGCTCCTTATTTGAAT 57.010 34.783 0.00 0.00 0.00 2.57
2827 5540 1.146358 GGCGCTCGAGACAATACCAC 61.146 60.000 18.75 0.00 0.00 4.16
3015 5734 3.947910 ATGGCACCAAAGATGAAACAG 57.052 42.857 0.00 0.00 0.00 3.16
3016 5735 1.340889 TGGCACCAAAGATGAAACAGC 59.659 47.619 0.00 0.00 0.00 4.40
3024 5745 3.963383 AAGATGAAACAGCGTTTTCGT 57.037 38.095 7.33 7.33 46.03 3.85
3089 5810 1.222936 CGGCAAGCCAGAGGAGATT 59.777 57.895 12.19 0.00 35.37 2.40
3198 5919 5.279106 CCTTCATATGGACCCGACGTATTAA 60.279 44.000 2.13 0.00 0.00 1.40
3208 5937 6.583806 GGACCCGACGTATTAACATAGTTATG 59.416 42.308 0.00 0.00 39.55 1.90
3307 6036 3.133362 TGAGTGTTACTGAAACCGAACCT 59.867 43.478 0.00 0.00 37.27 3.50
3411 6189 2.380410 CGTCAGGCTTGTGGCGTAC 61.380 63.158 0.00 0.00 40.70 3.67
3413 6191 3.118454 CAGGCTTGTGGCGTACGG 61.118 66.667 18.39 0.00 44.18 4.02
3414 6192 3.307906 AGGCTTGTGGCGTACGGA 61.308 61.111 18.39 0.00 44.18 4.69
3415 6193 2.813908 GGCTTGTGGCGTACGGAG 60.814 66.667 18.39 0.00 42.94 4.63
3416 6194 3.584868 GGCTTGTGGCGTACGGAGT 62.585 63.158 18.39 0.00 43.86 3.85
3417 6195 2.380410 GCTTGTGGCGTACGGAGTG 61.380 63.158 18.39 0.00 45.73 3.51
3438 6216 5.012148 AGTGCCTACTCATGTGTTCTTTACT 59.988 40.000 5.63 2.94 28.79 2.24
3490 6966 8.507249 GGATGGAAATTCAGTAGTATGTATTGC 58.493 37.037 0.00 0.00 0.00 3.56
3509 6985 3.067721 GCCCATAGCGTATACTCGATC 57.932 52.381 0.56 0.00 0.00 3.69
3510 6986 2.422479 GCCCATAGCGTATACTCGATCA 59.578 50.000 0.56 0.00 0.00 2.92
3511 6987 3.066900 GCCCATAGCGTATACTCGATCAT 59.933 47.826 0.56 0.00 0.00 2.45
3512 6988 4.440250 GCCCATAGCGTATACTCGATCATT 60.440 45.833 0.56 0.00 0.00 2.57
3513 6989 5.651530 CCCATAGCGTATACTCGATCATTT 58.348 41.667 0.56 0.00 0.00 2.32
3514 6990 5.516696 CCCATAGCGTATACTCGATCATTTG 59.483 44.000 0.56 0.00 0.00 2.32
3515 6991 5.516696 CCATAGCGTATACTCGATCATTTGG 59.483 44.000 0.56 0.00 0.00 3.28
3516 6992 4.585955 AGCGTATACTCGATCATTTGGT 57.414 40.909 0.56 0.00 0.00 3.67
3517 6993 4.945246 AGCGTATACTCGATCATTTGGTT 58.055 39.130 0.56 0.00 0.00 3.67
3518 6994 4.982916 AGCGTATACTCGATCATTTGGTTC 59.017 41.667 0.56 0.00 0.00 3.62
3612 7280 4.846779 TGTAATGTTTTGGCTGTCCTTC 57.153 40.909 0.00 0.00 0.00 3.46
3622 8066 0.039437 GCTGTCCTTCGTCTTCGACA 60.039 55.000 0.00 0.00 46.03 4.35
3741 8709 4.396166 AGGCGTCAAAAGTATCCATTTCAG 59.604 41.667 0.00 0.00 0.00 3.02
3836 8882 4.675190 ATCTTTGAACATGACGCTGAAG 57.325 40.909 0.00 0.00 0.00 3.02
3895 8941 2.294078 CCCTTCGTGCTCCCCTCTT 61.294 63.158 0.00 0.00 0.00 2.85
3959 9005 5.445845 CAAAATTTTGAGCACTCATTTGGC 58.554 37.500 23.72 0.00 40.55 4.52
3975 9022 6.738114 TCATTTGGCTTAACTGAAACTGAAG 58.262 36.000 0.00 0.00 0.00 3.02
4030 9077 8.402472 CGCCAGGAAACAAGAAAATATTACATA 58.598 33.333 0.00 0.00 0.00 2.29
4176 9241 8.504811 TTTATGGATATCAGGTATTCAGGTGA 57.495 34.615 4.83 0.00 31.78 4.02
4177 9242 8.504811 TTATGGATATCAGGTATTCAGGTGAA 57.495 34.615 4.83 0.00 31.78 3.18
4186 9251 9.784531 ATCAGGTATTCAGGTGAAGTTATATTG 57.215 33.333 0.00 0.00 37.48 1.90
4187 9252 8.768397 TCAGGTATTCAGGTGAAGTTATATTGT 58.232 33.333 0.00 0.00 37.48 2.71
4188 9253 9.396022 CAGGTATTCAGGTGAAGTTATATTGTT 57.604 33.333 0.00 0.00 37.48 2.83
4189 9254 9.396022 AGGTATTCAGGTGAAGTTATATTGTTG 57.604 33.333 0.00 0.00 37.48 3.33
4190 9255 9.391006 GGTATTCAGGTGAAGTTATATTGTTGA 57.609 33.333 0.00 0.00 37.48 3.18
4193 9258 8.918202 TTCAGGTGAAGTTATATTGTTGAGTT 57.082 30.769 0.00 0.00 0.00 3.01
4194 9259 8.322906 TCAGGTGAAGTTATATTGTTGAGTTG 57.677 34.615 0.00 0.00 0.00 3.16
4195 9260 7.936847 TCAGGTGAAGTTATATTGTTGAGTTGT 59.063 33.333 0.00 0.00 0.00 3.32
4196 9261 8.017373 CAGGTGAAGTTATATTGTTGAGTTGTG 58.983 37.037 0.00 0.00 0.00 3.33
4197 9262 7.719633 AGGTGAAGTTATATTGTTGAGTTGTGT 59.280 33.333 0.00 0.00 0.00 3.72
4198 9263 8.349983 GGTGAAGTTATATTGTTGAGTTGTGTT 58.650 33.333 0.00 0.00 0.00 3.32
4199 9264 9.169468 GTGAAGTTATATTGTTGAGTTGTGTTG 57.831 33.333 0.00 0.00 0.00 3.33
4200 9265 8.898761 TGAAGTTATATTGTTGAGTTGTGTTGT 58.101 29.630 0.00 0.00 0.00 3.32
4204 9269 9.098746 GTTATATTGTTGAGTTGTGTTGTAACG 57.901 33.333 0.00 0.00 33.39 3.18
4205 9270 5.554822 ATTGTTGAGTTGTGTTGTAACGT 57.445 34.783 0.00 0.00 33.39 3.99
4206 9271 4.329296 TGTTGAGTTGTGTTGTAACGTG 57.671 40.909 0.00 0.00 33.39 4.49
4207 9272 3.747010 TGTTGAGTTGTGTTGTAACGTGT 59.253 39.130 0.00 0.00 33.39 4.49
4208 9273 4.213694 TGTTGAGTTGTGTTGTAACGTGTT 59.786 37.500 0.00 0.00 33.39 3.32
4209 9274 4.329296 TGAGTTGTGTTGTAACGTGTTG 57.671 40.909 0.00 0.00 33.39 3.33
4210 9275 3.125487 TGAGTTGTGTTGTAACGTGTTGG 59.875 43.478 0.00 0.00 33.39 3.77
4211 9276 2.159490 AGTTGTGTTGTAACGTGTTGGC 60.159 45.455 0.00 0.00 33.39 4.52
4212 9277 1.740297 TGTGTTGTAACGTGTTGGCT 58.260 45.000 0.00 0.00 0.00 4.75
4213 9278 2.085320 TGTGTTGTAACGTGTTGGCTT 58.915 42.857 0.00 0.00 0.00 4.35
4214 9279 2.159503 TGTGTTGTAACGTGTTGGCTTG 60.160 45.455 0.00 0.00 0.00 4.01
4215 9280 1.202200 TGTTGTAACGTGTTGGCTTGC 60.202 47.619 0.00 0.00 0.00 4.01
4216 9281 1.095600 TTGTAACGTGTTGGCTTGCA 58.904 45.000 0.00 0.00 0.00 4.08
4217 9282 1.313772 TGTAACGTGTTGGCTTGCAT 58.686 45.000 0.00 0.00 0.00 3.96
4218 9283 1.001924 TGTAACGTGTTGGCTTGCATG 60.002 47.619 0.00 0.00 0.00 4.06
4219 9284 0.039617 TAACGTGTTGGCTTGCATGC 60.040 50.000 15.87 15.87 0.00 4.06
4226 9291 3.938048 GGCTTGCATGCCCATGTA 58.062 55.556 28.76 2.70 46.82 2.29
4227 9292 2.433217 GGCTTGCATGCCCATGTAT 58.567 52.632 28.76 0.00 46.82 2.29
4228 9293 0.754472 GGCTTGCATGCCCATGTATT 59.246 50.000 28.76 0.00 46.82 1.89
4229 9294 1.139455 GGCTTGCATGCCCATGTATTT 59.861 47.619 28.76 0.00 46.82 1.40
4230 9295 2.364970 GGCTTGCATGCCCATGTATTTA 59.635 45.455 28.76 0.00 46.82 1.40
4231 9296 3.553508 GGCTTGCATGCCCATGTATTTAG 60.554 47.826 28.76 0.00 46.82 1.85
4232 9297 3.553508 GCTTGCATGCCCATGTATTTAGG 60.554 47.826 16.68 0.00 40.80 2.69
4233 9298 3.591695 TGCATGCCCATGTATTTAGGA 57.408 42.857 16.68 0.00 40.80 2.94
4234 9299 4.116782 TGCATGCCCATGTATTTAGGAT 57.883 40.909 16.68 0.00 40.80 3.24
4235 9300 4.081406 TGCATGCCCATGTATTTAGGATC 58.919 43.478 16.68 0.00 40.80 3.36
4236 9301 4.081406 GCATGCCCATGTATTTAGGATCA 58.919 43.478 6.36 0.00 40.80 2.92
4237 9302 4.082571 GCATGCCCATGTATTTAGGATCAC 60.083 45.833 6.36 0.00 40.80 3.06
4238 9303 4.787135 TGCCCATGTATTTAGGATCACA 57.213 40.909 0.00 0.00 0.00 3.58
4239 9304 4.717877 TGCCCATGTATTTAGGATCACAG 58.282 43.478 0.00 0.00 0.00 3.66
4240 9305 4.074970 GCCCATGTATTTAGGATCACAGG 58.925 47.826 0.00 0.00 0.00 4.00
4241 9306 4.074970 CCCATGTATTTAGGATCACAGGC 58.925 47.826 0.00 0.00 0.00 4.85
4242 9307 4.074970 CCATGTATTTAGGATCACAGGCC 58.925 47.826 0.00 0.00 0.00 5.19
4243 9308 4.202503 CCATGTATTTAGGATCACAGGCCT 60.203 45.833 0.00 0.00 38.31 5.19
4244 9309 4.422073 TGTATTTAGGATCACAGGCCTG 57.578 45.455 31.60 31.60 35.73 4.85
4245 9310 2.355010 ATTTAGGATCACAGGCCTGC 57.645 50.000 33.06 16.06 35.73 4.85
4246 9311 0.107703 TTTAGGATCACAGGCCTGCG 60.108 55.000 33.06 24.22 35.73 5.18
4247 9312 1.264749 TTAGGATCACAGGCCTGCGT 61.265 55.000 33.06 18.50 35.73 5.24
4248 9313 1.960040 TAGGATCACAGGCCTGCGTG 61.960 60.000 33.06 23.64 35.73 5.34
4249 9314 3.503363 GATCACAGGCCTGCGTGC 61.503 66.667 33.06 16.05 35.48 5.34
4257 9322 3.102097 GCCTGCGTGCCTTATGAC 58.898 61.111 0.00 0.00 0.00 3.06
4258 9323 1.450312 GCCTGCGTGCCTTATGACT 60.450 57.895 0.00 0.00 0.00 3.41
4259 9324 1.432270 GCCTGCGTGCCTTATGACTC 61.432 60.000 0.00 0.00 0.00 3.36
4260 9325 1.148157 CCTGCGTGCCTTATGACTCG 61.148 60.000 0.00 0.00 0.00 4.18
4261 9326 1.148157 CTGCGTGCCTTATGACTCGG 61.148 60.000 0.00 0.00 0.00 4.63
4262 9327 1.883084 GCGTGCCTTATGACTCGGG 60.883 63.158 0.00 0.00 0.00 5.14
4263 9328 1.883084 CGTGCCTTATGACTCGGGC 60.883 63.158 0.00 0.00 44.31 6.13
4265 9330 4.445699 GCCTTATGACTCGGGCAG 57.554 61.111 0.00 0.00 43.59 4.85
4266 9331 1.889573 GCCTTATGACTCGGGCAGC 60.890 63.158 0.00 0.00 43.59 5.25
4267 9332 1.592669 CCTTATGACTCGGGCAGCG 60.593 63.158 0.00 0.00 0.00 5.18
4268 9333 2.202878 TTATGACTCGGGCAGCGC 60.203 61.111 0.00 0.00 0.00 5.92
4278 9343 4.230002 GGCAGCGCCCGGTGTATA 62.230 66.667 19.18 0.00 44.06 1.47
4279 9344 2.030562 GCAGCGCCCGGTGTATAT 59.969 61.111 19.18 0.00 44.52 0.86
4280 9345 1.290955 GCAGCGCCCGGTGTATATA 59.709 57.895 19.18 0.00 44.52 0.86
4281 9346 0.320073 GCAGCGCCCGGTGTATATAA 60.320 55.000 19.18 0.00 44.52 0.98
4282 9347 1.874739 GCAGCGCCCGGTGTATATAAA 60.875 52.381 19.18 0.00 44.52 1.40
4283 9348 1.796459 CAGCGCCCGGTGTATATAAAC 59.204 52.381 2.29 0.00 38.64 2.01
4284 9349 1.150827 GCGCCCGGTGTATATAAACC 58.849 55.000 11.68 11.68 0.00 3.27
4285 9350 1.270465 GCGCCCGGTGTATATAAACCT 60.270 52.381 18.25 0.00 34.06 3.50
4286 9351 2.680577 CGCCCGGTGTATATAAACCTC 58.319 52.381 18.25 7.81 34.06 3.85
4287 9352 2.298163 CGCCCGGTGTATATAAACCTCT 59.702 50.000 18.25 0.00 34.06 3.69
4288 9353 3.660865 GCCCGGTGTATATAAACCTCTG 58.339 50.000 18.25 8.68 34.06 3.35
4289 9354 3.070590 GCCCGGTGTATATAAACCTCTGT 59.929 47.826 18.25 0.00 34.06 3.41
4290 9355 4.443881 GCCCGGTGTATATAAACCTCTGTT 60.444 45.833 18.25 0.00 34.06 3.16
4291 9356 5.054477 CCCGGTGTATATAAACCTCTGTTG 58.946 45.833 18.25 3.55 34.13 3.33
4292 9357 5.395990 CCCGGTGTATATAAACCTCTGTTGT 60.396 44.000 18.25 0.00 34.13 3.32
4293 9358 6.183360 CCCGGTGTATATAAACCTCTGTTGTA 60.183 42.308 18.25 0.00 34.13 2.41
4294 9359 7.267128 CCGGTGTATATAAACCTCTGTTGTAA 58.733 38.462 18.25 0.00 34.13 2.41
4295 9360 7.223387 CCGGTGTATATAAACCTCTGTTGTAAC 59.777 40.741 18.25 0.00 34.13 2.50
4296 9361 7.760794 CGGTGTATATAAACCTCTGTTGTAACA 59.239 37.037 18.25 0.00 34.13 2.41
4297 9362 8.876790 GGTGTATATAAACCTCTGTTGTAACAC 58.123 37.037 14.13 0.96 34.13 3.32
4298 9363 9.649167 GTGTATATAAACCTCTGTTGTAACACT 57.351 33.333 0.00 0.00 34.13 3.55
4302 9367 9.959721 ATATAAACCTCTGTTGTAACACTTGAT 57.040 29.630 0.00 0.00 34.13 2.57
4303 9368 6.619801 AAACCTCTGTTGTAACACTTGATC 57.380 37.500 0.00 0.00 34.13 2.92
4304 9369 5.290493 ACCTCTGTTGTAACACTTGATCA 57.710 39.130 0.00 0.00 34.70 2.92
4305 9370 5.680619 ACCTCTGTTGTAACACTTGATCAA 58.319 37.500 8.12 8.12 34.70 2.57
4306 9371 6.299141 ACCTCTGTTGTAACACTTGATCAAT 58.701 36.000 8.96 0.00 34.70 2.57
4307 9372 7.450074 ACCTCTGTTGTAACACTTGATCAATA 58.550 34.615 8.96 0.00 34.70 1.90
4308 9373 8.103305 ACCTCTGTTGTAACACTTGATCAATAT 58.897 33.333 8.96 0.00 34.70 1.28
4309 9374 9.599866 CCTCTGTTGTAACACTTGATCAATATA 57.400 33.333 8.96 0.00 34.70 0.86
4311 9376 9.083080 TCTGTTGTAACACTTGATCAATATACG 57.917 33.333 8.96 0.00 34.70 3.06
4312 9377 8.989653 TGTTGTAACACTTGATCAATATACGA 57.010 30.769 8.96 7.14 33.17 3.43
4313 9378 9.083080 TGTTGTAACACTTGATCAATATACGAG 57.917 33.333 8.96 0.00 33.17 4.18
4314 9379 9.297586 GTTGTAACACTTGATCAATATACGAGA 57.702 33.333 8.96 0.00 0.00 4.04
4315 9380 9.516314 TTGTAACACTTGATCAATATACGAGAG 57.484 33.333 8.96 0.00 0.00 3.20
4329 9394 3.810310 ACGAGAGTGATTTGATCCTCC 57.190 47.619 0.00 0.00 46.97 4.30
4330 9395 3.099905 ACGAGAGTGATTTGATCCTCCA 58.900 45.455 0.00 0.00 46.97 3.86
4331 9396 3.515502 ACGAGAGTGATTTGATCCTCCAA 59.484 43.478 0.00 0.00 46.97 3.53
4332 9397 3.868077 CGAGAGTGATTTGATCCTCCAAC 59.132 47.826 0.00 0.00 31.21 3.77
4333 9398 4.382470 CGAGAGTGATTTGATCCTCCAACT 60.382 45.833 0.00 0.00 31.21 3.16
4334 9399 5.495640 GAGAGTGATTTGATCCTCCAACTT 58.504 41.667 0.00 0.00 31.21 2.66
4335 9400 5.251764 AGAGTGATTTGATCCTCCAACTTG 58.748 41.667 0.00 0.00 31.21 3.16
4336 9401 4.338879 AGTGATTTGATCCTCCAACTTGG 58.661 43.478 0.74 0.74 39.43 3.61
4337 9402 4.082125 GTGATTTGATCCTCCAACTTGGT 58.918 43.478 7.72 0.00 39.03 3.67
4338 9403 5.014123 AGTGATTTGATCCTCCAACTTGGTA 59.986 40.000 7.72 0.00 39.03 3.25
4339 9404 5.888161 GTGATTTGATCCTCCAACTTGGTAT 59.112 40.000 7.72 0.96 39.03 2.73
4340 9405 6.038714 GTGATTTGATCCTCCAACTTGGTATC 59.961 42.308 7.72 9.71 39.03 2.24
4341 9406 5.512942 TTTGATCCTCCAACTTGGTATCA 57.487 39.130 7.72 11.78 39.03 2.15
4342 9407 4.760530 TGATCCTCCAACTTGGTATCAG 57.239 45.455 7.72 0.00 39.03 2.90
4343 9408 3.455910 TGATCCTCCAACTTGGTATCAGG 59.544 47.826 7.72 7.24 39.03 3.86
4344 9409 2.915869 TCCTCCAACTTGGTATCAGGT 58.084 47.619 7.72 0.00 39.03 4.00
4345 9410 4.069312 TCCTCCAACTTGGTATCAGGTA 57.931 45.455 7.72 0.00 39.03 3.08
4346 9411 3.773119 TCCTCCAACTTGGTATCAGGTAC 59.227 47.826 7.72 0.00 39.03 3.34
4354 9419 3.242355 GTATCAGGTACCAGGCCCT 57.758 57.895 15.94 0.00 0.00 5.19
4355 9420 1.049402 GTATCAGGTACCAGGCCCTC 58.951 60.000 15.94 0.00 0.00 4.30
4356 9421 0.105142 TATCAGGTACCAGGCCCTCC 60.105 60.000 15.94 0.00 0.00 4.30
4357 9422 1.902818 ATCAGGTACCAGGCCCTCCT 61.903 60.000 15.94 0.00 45.66 3.69
4358 9423 1.226104 TCAGGTACCAGGCCCTCCTA 61.226 60.000 15.94 0.00 41.93 2.94
4359 9424 1.049289 CAGGTACCAGGCCCTCCTAC 61.049 65.000 15.94 0.00 41.93 3.18
4360 9425 1.229626 AGGTACCAGGCCCTCCTACT 61.230 60.000 15.94 0.00 41.93 2.57
4361 9426 0.759812 GGTACCAGGCCCTCCTACTC 60.760 65.000 7.15 0.00 41.93 2.59
4362 9427 0.262285 GTACCAGGCCCTCCTACTCT 59.738 60.000 0.00 0.00 41.93 3.24
4363 9428 0.261991 TACCAGGCCCTCCTACTCTG 59.738 60.000 0.00 0.00 41.93 3.35
4364 9429 1.002274 CCAGGCCCTCCTACTCTGT 59.998 63.158 0.00 0.00 41.93 3.41
4365 9430 1.045911 CCAGGCCCTCCTACTCTGTC 61.046 65.000 0.00 0.00 41.93 3.51
4366 9431 1.076632 AGGCCCTCCTACTCTGTCG 60.077 63.158 0.00 0.00 42.06 4.35
4367 9432 2.787567 GGCCCTCCTACTCTGTCGC 61.788 68.421 0.00 0.00 0.00 5.19
4368 9433 2.787567 GCCCTCCTACTCTGTCGCC 61.788 68.421 0.00 0.00 0.00 5.54
4369 9434 1.379977 CCCTCCTACTCTGTCGCCA 60.380 63.158 0.00 0.00 0.00 5.69
4370 9435 0.757188 CCCTCCTACTCTGTCGCCAT 60.757 60.000 0.00 0.00 0.00 4.40
4371 9436 0.387202 CCTCCTACTCTGTCGCCATG 59.613 60.000 0.00 0.00 0.00 3.66
4372 9437 1.393603 CTCCTACTCTGTCGCCATGA 58.606 55.000 0.00 0.00 0.00 3.07
4385 9450 4.899239 CATGACTCCGCCCGGCTC 62.899 72.222 8.05 0.00 34.68 4.70
4435 9500 4.824515 CGGGCTCCCTCTCGTCCT 62.825 72.222 3.11 0.00 0.00 3.85
4436 9501 2.835895 GGGCTCCCTCTCGTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
4437 9502 3.213402 GGCTCCCTCTCGTCCTCG 61.213 72.222 0.00 0.00 38.55 4.63
4438 9503 3.213402 GCTCCCTCTCGTCCTCGG 61.213 72.222 0.00 0.00 37.69 4.63
4439 9504 3.213402 CTCCCTCTCGTCCTCGGC 61.213 72.222 0.00 0.00 37.69 5.54
4442 9507 3.878519 CCTCTCGTCCTCGGCGAC 61.879 72.222 4.99 0.00 37.69 5.19
4443 9508 2.820479 CTCTCGTCCTCGGCGACT 60.820 66.667 4.99 0.00 37.69 4.18
4444 9509 3.102107 CTCTCGTCCTCGGCGACTG 62.102 68.421 4.99 0.00 37.69 3.51
4445 9510 4.838486 CTCGTCCTCGGCGACTGC 62.838 72.222 4.99 0.00 41.71 4.40
4468 9533 3.322466 CCACCTCCTTGGCGACCT 61.322 66.667 0.00 0.00 40.22 3.85
4469 9534 2.266055 CACCTCCTTGGCGACCTC 59.734 66.667 0.00 0.00 40.22 3.85
4470 9535 3.382832 ACCTCCTTGGCGACCTCG 61.383 66.667 0.00 0.00 40.22 4.63
4491 9556 2.750237 GGCACCACCCCGTTCATC 60.750 66.667 0.00 0.00 0.00 2.92
4492 9557 2.351276 GCACCACCCCGTTCATCT 59.649 61.111 0.00 0.00 0.00 2.90
4493 9558 1.303317 GCACCACCCCGTTCATCTT 60.303 57.895 0.00 0.00 0.00 2.40
4494 9559 1.305930 GCACCACCCCGTTCATCTTC 61.306 60.000 0.00 0.00 0.00 2.87
4495 9560 0.324943 CACCACCCCGTTCATCTTCT 59.675 55.000 0.00 0.00 0.00 2.85
4496 9561 0.613777 ACCACCCCGTTCATCTTCTC 59.386 55.000 0.00 0.00 0.00 2.87
4497 9562 0.107654 CCACCCCGTTCATCTTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
4498 9563 0.460284 CACCCCGTTCATCTTCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
4499 9564 1.144057 CCCCGTTCATCTTCTCCGG 59.856 63.158 0.00 0.00 38.39 5.14
4500 9565 1.521681 CCCGTTCATCTTCTCCGGC 60.522 63.158 0.00 0.00 37.37 6.13
4501 9566 1.878522 CCGTTCATCTTCTCCGGCG 60.879 63.158 0.00 0.00 0.00 6.46
4502 9567 2.517450 CGTTCATCTTCTCCGGCGC 61.517 63.158 0.00 0.00 0.00 6.53
4503 9568 2.174319 GTTCATCTTCTCCGGCGCC 61.174 63.158 19.07 19.07 0.00 6.53
4504 9569 2.359169 TTCATCTTCTCCGGCGCCT 61.359 57.895 26.68 0.00 0.00 5.52
4505 9570 2.279784 CATCTTCTCCGGCGCCTC 60.280 66.667 26.68 0.00 0.00 4.70
4506 9571 2.443016 ATCTTCTCCGGCGCCTCT 60.443 61.111 26.68 0.00 0.00 3.69
4507 9572 2.790791 ATCTTCTCCGGCGCCTCTG 61.791 63.158 26.68 13.13 0.00 3.35
4508 9573 4.521062 CTTCTCCGGCGCCTCTGG 62.521 72.222 26.68 19.01 42.90 3.86
4519 9584 4.767255 CCTCTGGCAGCACCGGTC 62.767 72.222 2.59 0.00 46.11 4.79
4520 9585 4.767255 CTCTGGCAGCACCGGTCC 62.767 72.222 2.59 2.88 46.11 4.46
4525 9590 4.459089 GCAGCACCGGTCCCTCTC 62.459 72.222 2.59 0.00 0.00 3.20
4526 9591 2.997315 CAGCACCGGTCCCTCTCA 60.997 66.667 2.59 0.00 0.00 3.27
4527 9592 2.681778 AGCACCGGTCCCTCTCAG 60.682 66.667 2.59 0.00 0.00 3.35
4528 9593 2.997897 GCACCGGTCCCTCTCAGT 60.998 66.667 2.59 0.00 0.00 3.41
4529 9594 2.584391 GCACCGGTCCCTCTCAGTT 61.584 63.158 2.59 0.00 0.00 3.16
4530 9595 1.592223 CACCGGTCCCTCTCAGTTC 59.408 63.158 2.59 0.00 0.00 3.01
4531 9596 1.977544 ACCGGTCCCTCTCAGTTCG 60.978 63.158 0.00 0.00 0.00 3.95
4532 9597 2.182030 CGGTCCCTCTCAGTTCGC 59.818 66.667 0.00 0.00 0.00 4.70
4533 9598 2.579738 GGTCCCTCTCAGTTCGCC 59.420 66.667 0.00 0.00 0.00 5.54
4534 9599 2.579738 GTCCCTCTCAGTTCGCCC 59.420 66.667 0.00 0.00 0.00 6.13
4535 9600 2.683933 TCCCTCTCAGTTCGCCCC 60.684 66.667 0.00 0.00 0.00 5.80
4536 9601 2.685380 CCCTCTCAGTTCGCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
4537 9602 2.726351 CCCTCTCAGTTCGCCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
4538 9603 1.684049 CCTCTCAGTTCGCCCCTCT 60.684 63.158 0.00 0.00 0.00 3.69
4539 9604 1.671901 CCTCTCAGTTCGCCCCTCTC 61.672 65.000 0.00 0.00 0.00 3.20
4540 9605 0.682855 CTCTCAGTTCGCCCCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
4541 9606 0.251832 TCTCAGTTCGCCCCTCTCTT 60.252 55.000 0.00 0.00 0.00 2.85
4542 9607 0.174617 CTCAGTTCGCCCCTCTCTTC 59.825 60.000 0.00 0.00 0.00 2.87
4543 9608 0.541998 TCAGTTCGCCCCTCTCTTCA 60.542 55.000 0.00 0.00 0.00 3.02
4544 9609 0.390472 CAGTTCGCCCCTCTCTTCAC 60.390 60.000 0.00 0.00 0.00 3.18
4545 9610 1.446272 GTTCGCCCCTCTCTTCACG 60.446 63.158 0.00 0.00 0.00 4.35
4546 9611 1.906824 TTCGCCCCTCTCTTCACGT 60.907 57.895 0.00 0.00 0.00 4.49
4547 9612 1.874345 TTCGCCCCTCTCTTCACGTC 61.874 60.000 0.00 0.00 0.00 4.34
4548 9613 2.579738 GCCCCTCTCTTCACGTCC 59.420 66.667 0.00 0.00 0.00 4.79
4549 9614 1.985116 GCCCCTCTCTTCACGTCCT 60.985 63.158 0.00 0.00 0.00 3.85
4550 9615 1.950973 GCCCCTCTCTTCACGTCCTC 61.951 65.000 0.00 0.00 0.00 3.71
4551 9616 0.612174 CCCCTCTCTTCACGTCCTCA 60.612 60.000 0.00 0.00 0.00 3.86
4552 9617 0.528470 CCCTCTCTTCACGTCCTCAC 59.472 60.000 0.00 0.00 0.00 3.51
4553 9618 0.528470 CCTCTCTTCACGTCCTCACC 59.472 60.000 0.00 0.00 0.00 4.02
4554 9619 0.528470 CTCTCTTCACGTCCTCACCC 59.472 60.000 0.00 0.00 0.00 4.61
4555 9620 0.112606 TCTCTTCACGTCCTCACCCT 59.887 55.000 0.00 0.00 0.00 4.34
4556 9621 0.528470 CTCTTCACGTCCTCACCCTC 59.472 60.000 0.00 0.00 0.00 4.30
4557 9622 0.112606 TCTTCACGTCCTCACCCTCT 59.887 55.000 0.00 0.00 0.00 3.69
4558 9623 0.244994 CTTCACGTCCTCACCCTCTG 59.755 60.000 0.00 0.00 0.00 3.35
4559 9624 1.816863 TTCACGTCCTCACCCTCTGC 61.817 60.000 0.00 0.00 0.00 4.26
4560 9625 3.374402 ACGTCCTCACCCTCTGCG 61.374 66.667 0.00 0.00 0.00 5.18
4561 9626 4.803426 CGTCCTCACCCTCTGCGC 62.803 72.222 0.00 0.00 0.00 6.09
4562 9627 4.459089 GTCCTCACCCTCTGCGCC 62.459 72.222 4.18 0.00 0.00 6.53
4564 9629 4.767255 CCTCACCCTCTGCGCCAC 62.767 72.222 4.18 0.00 0.00 5.01
4565 9630 4.767255 CTCACCCTCTGCGCCACC 62.767 72.222 4.18 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 117 5.935206 TCGATGAGCAACTACCATTAAACAA 59.065 36.000 0.00 0.00 0.00 2.83
348 358 7.960738 TGTACTAGCTCAAAATTAAATGAACGC 59.039 33.333 0.00 0.00 0.00 4.84
485 515 9.503427 GAATAAATAACAATACCTTGTGCAGAC 57.497 33.333 0.00 0.00 44.83 3.51
647 688 5.796424 CTATGAAGCAGGGCCAAAATTAT 57.204 39.130 6.18 0.00 0.00 1.28
1240 1346 1.541310 AAATGAGAGTGCCCGGTCGA 61.541 55.000 0.00 0.00 0.00 4.20
1295 3466 8.618702 CTAATTAAGGAGACCGATACAGAGTA 57.381 38.462 0.00 0.00 0.00 2.59
1427 3602 0.034896 CTCCGGTAACCACTGCAACT 59.965 55.000 0.00 0.00 0.00 3.16
1716 3893 2.316108 GCTAGAAGGCTAGAAGGAGCT 58.684 52.381 4.23 0.00 45.71 4.09
1787 3972 4.297299 AGCATGGCATGAAAAGTATTCG 57.703 40.909 30.69 0.00 0.00 3.34
1819 4004 4.156373 TCATGATATGTGTTTGTGTGGCAG 59.844 41.667 0.00 0.00 0.00 4.85
1996 4182 9.935682 CAACATCCAACATCATGTATAAAGTAC 57.064 33.333 0.00 0.00 32.74 2.73
2030 4312 4.196193 CAGCGTTCCCCAAGTATCAATTA 58.804 43.478 0.00 0.00 0.00 1.40
2058 4340 2.821969 AGAACCTGCATTGTTCACCATC 59.178 45.455 23.43 4.49 43.57 3.51
2059 4341 2.821969 GAGAACCTGCATTGTTCACCAT 59.178 45.455 23.43 9.21 43.57 3.55
2082 4368 4.516698 GGCAGACAGAGAGATGAAAACAAA 59.483 41.667 0.00 0.00 0.00 2.83
2168 4570 2.361567 CCAAGAATGGCCCCCAAGC 61.362 63.158 0.00 0.00 40.58 4.01
2321 4725 8.667076 AGATTTTTAAAGCATATTTGATGCCC 57.333 30.769 5.93 0.00 45.59 5.36
2665 5090 5.994250 AGGAGCAGCACTTTAATCAAGATA 58.006 37.500 0.00 0.00 36.21 1.98
2697 5409 6.434028 AGGCAAAATGTCAGACAAGCTTAATA 59.566 34.615 7.50 0.00 0.00 0.98
2802 5514 2.126424 GTCTCGAGCGCCTTTCGT 60.126 61.111 15.83 0.00 41.07 3.85
2852 5565 5.881923 ATGGAATTTAGCCAATGCAGATT 57.118 34.783 0.00 0.00 39.21 2.40
3015 5734 4.776615 GCAGTAAAACCAAAACGAAAACGC 60.777 41.667 0.00 0.00 0.00 4.84
3016 5735 4.259490 GGCAGTAAAACCAAAACGAAAACG 60.259 41.667 0.00 0.00 0.00 3.60
3024 5745 5.352846 GCAAGAAAAGGCAGTAAAACCAAAA 59.647 36.000 0.00 0.00 0.00 2.44
3089 5810 0.764369 AGAACTCCACCAGTCCAGCA 60.764 55.000 0.00 0.00 32.30 4.41
3208 5937 6.979238 AGTCAAGTCTTCAAGTACACTAACAC 59.021 38.462 0.00 0.00 0.00 3.32
3307 6036 2.736144 ACGTTTCCACATCTCGCTTA 57.264 45.000 0.00 0.00 0.00 3.09
3414 6192 4.357918 AAAGAACACATGAGTAGGCACT 57.642 40.909 0.00 0.00 46.37 4.40
3415 6193 5.120830 CAGTAAAGAACACATGAGTAGGCAC 59.879 44.000 0.00 0.00 0.00 5.01
3416 6194 5.237815 CAGTAAAGAACACATGAGTAGGCA 58.762 41.667 0.00 0.00 0.00 4.75
3417 6195 4.631813 CCAGTAAAGAACACATGAGTAGGC 59.368 45.833 0.00 0.00 0.00 3.93
3419 6197 6.037786 TCCCAGTAAAGAACACATGAGTAG 57.962 41.667 0.00 0.00 0.00 2.57
3425 6203 4.398319 CAACCTCCCAGTAAAGAACACAT 58.602 43.478 0.00 0.00 0.00 3.21
3438 6216 5.098663 ACTATAACTTTCTCCAACCTCCCA 58.901 41.667 0.00 0.00 0.00 4.37
3490 6966 4.902443 ATGATCGAGTATACGCTATGGG 57.098 45.455 5.05 0.00 0.00 4.00
3498 6974 6.292168 CGGTTGAACCAAATGATCGAGTATAC 60.292 42.308 15.58 0.00 38.47 1.47
3500 6976 4.570772 CGGTTGAACCAAATGATCGAGTAT 59.429 41.667 15.58 0.00 38.47 2.12
3501 6977 3.930229 CGGTTGAACCAAATGATCGAGTA 59.070 43.478 15.58 0.00 38.47 2.59
3502 6978 2.742053 CGGTTGAACCAAATGATCGAGT 59.258 45.455 15.58 0.00 38.47 4.18
3503 6979 3.000041 TCGGTTGAACCAAATGATCGAG 59.000 45.455 15.58 0.00 38.47 4.04
3504 6980 3.046968 TCGGTTGAACCAAATGATCGA 57.953 42.857 15.58 0.00 38.47 3.59
3505 6981 3.822594 TTCGGTTGAACCAAATGATCG 57.177 42.857 15.58 0.00 38.47 3.69
3506 6982 5.121221 ACTTTCGGTTGAACCAAATGATC 57.879 39.130 15.58 0.00 38.47 2.92
3507 6983 5.048294 GGTACTTTCGGTTGAACCAAATGAT 60.048 40.000 15.58 5.87 38.47 2.45
3508 6984 4.276431 GGTACTTTCGGTTGAACCAAATGA 59.724 41.667 15.58 0.03 38.47 2.57
3509 6985 4.036971 TGGTACTTTCGGTTGAACCAAATG 59.963 41.667 15.58 7.26 38.47 2.32
3510 6986 4.208746 TGGTACTTTCGGTTGAACCAAAT 58.791 39.130 15.58 0.00 38.47 2.32
3511 6987 3.618351 TGGTACTTTCGGTTGAACCAAA 58.382 40.909 15.58 12.30 38.47 3.28
3512 6988 3.118334 TCTGGTACTTTCGGTTGAACCAA 60.118 43.478 15.58 5.23 38.47 3.67
3513 6989 2.435069 TCTGGTACTTTCGGTTGAACCA 59.565 45.455 15.58 0.00 38.47 3.67
3514 6990 3.116079 TCTGGTACTTTCGGTTGAACC 57.884 47.619 3.76 3.76 32.71 3.62
3515 6991 5.488645 TTTTCTGGTACTTTCGGTTGAAC 57.511 39.130 0.00 0.00 32.71 3.18
3516 6992 6.702716 ATTTTTCTGGTACTTTCGGTTGAA 57.297 33.333 0.00 0.00 0.00 2.69
3517 6993 7.255208 GGTTATTTTTCTGGTACTTTCGGTTGA 60.255 37.037 0.00 0.00 0.00 3.18
3518 6994 6.859508 GGTTATTTTTCTGGTACTTTCGGTTG 59.140 38.462 0.00 0.00 0.00 3.77
3570 7134 4.155280 ACATTTGGCGGACTTGTACAATAC 59.845 41.667 9.13 6.22 0.00 1.89
3741 8709 2.092429 TCTGTTCCCATAATCAGGCCAC 60.092 50.000 5.01 0.00 0.00 5.01
3836 8882 5.823045 AGCTGTGACTTTTATATAAGGTGCC 59.177 40.000 7.69 0.00 0.00 5.01
3881 8927 3.706373 GGCAAGAGGGGAGCACGA 61.706 66.667 0.00 0.00 0.00 4.35
3959 9005 5.983475 CTGACTGCTTCAGTTTCAGTTAAG 58.017 41.667 7.53 0.00 45.44 1.85
3975 9022 4.806247 GTGTTACCTCATATGTCTGACTGC 59.194 45.833 9.51 0.00 0.00 4.40
4066 9117 8.676401 GCTAGTAATCCTACAGGCTAGTAATAC 58.324 40.741 8.54 0.00 31.16 1.89
4185 9250 3.747010 ACACGTTACAACACAACTCAACA 59.253 39.130 0.00 0.00 0.00 3.33
4186 9251 4.330740 ACACGTTACAACACAACTCAAC 57.669 40.909 0.00 0.00 0.00 3.18
4187 9252 4.378563 CCAACACGTTACAACACAACTCAA 60.379 41.667 0.00 0.00 0.00 3.02
4188 9253 3.125487 CCAACACGTTACAACACAACTCA 59.875 43.478 0.00 0.00 0.00 3.41
4189 9254 3.676540 CCAACACGTTACAACACAACTC 58.323 45.455 0.00 0.00 0.00 3.01
4190 9255 2.159490 GCCAACACGTTACAACACAACT 60.159 45.455 0.00 0.00 0.00 3.16
4191 9256 2.159490 AGCCAACACGTTACAACACAAC 60.159 45.455 0.00 0.00 0.00 3.32
4192 9257 2.085320 AGCCAACACGTTACAACACAA 58.915 42.857 0.00 0.00 0.00 3.33
4193 9258 1.740297 AGCCAACACGTTACAACACA 58.260 45.000 0.00 0.00 0.00 3.72
4194 9259 2.446282 CAAGCCAACACGTTACAACAC 58.554 47.619 0.00 0.00 0.00 3.32
4195 9260 1.202200 GCAAGCCAACACGTTACAACA 60.202 47.619 0.00 0.00 0.00 3.33
4196 9261 1.202200 TGCAAGCCAACACGTTACAAC 60.202 47.619 0.00 0.00 0.00 3.32
4197 9262 1.095600 TGCAAGCCAACACGTTACAA 58.904 45.000 0.00 0.00 0.00 2.41
4198 9263 1.001924 CATGCAAGCCAACACGTTACA 60.002 47.619 0.00 0.00 0.00 2.41
4199 9264 1.685302 CATGCAAGCCAACACGTTAC 58.315 50.000 0.00 0.00 0.00 2.50
4200 9265 0.039617 GCATGCAAGCCAACACGTTA 60.040 50.000 14.21 0.00 0.00 3.18
4201 9266 1.300080 GCATGCAAGCCAACACGTT 60.300 52.632 14.21 0.00 0.00 3.99
4202 9267 2.336088 GCATGCAAGCCAACACGT 59.664 55.556 14.21 0.00 0.00 4.49
4210 9275 2.607631 AAATACATGGGCATGCAAGC 57.392 45.000 21.36 5.09 42.39 4.01
4211 9276 3.890756 TCCTAAATACATGGGCATGCAAG 59.109 43.478 21.36 8.16 42.39 4.01
4212 9277 3.908476 TCCTAAATACATGGGCATGCAA 58.092 40.909 21.36 7.48 42.39 4.08
4213 9278 3.591695 TCCTAAATACATGGGCATGCA 57.408 42.857 21.36 0.00 42.39 3.96
4214 9279 4.081406 TGATCCTAAATACATGGGCATGC 58.919 43.478 9.90 9.90 42.39 4.06
4215 9280 5.072055 TGTGATCCTAAATACATGGGCATG 58.928 41.667 0.00 0.00 44.15 4.06
4216 9281 5.319453 CTGTGATCCTAAATACATGGGCAT 58.681 41.667 0.00 0.00 0.00 4.40
4217 9282 4.446167 CCTGTGATCCTAAATACATGGGCA 60.446 45.833 0.00 0.00 0.00 5.36
4218 9283 4.074970 CCTGTGATCCTAAATACATGGGC 58.925 47.826 0.00 0.00 0.00 5.36
4219 9284 4.074970 GCCTGTGATCCTAAATACATGGG 58.925 47.826 0.00 0.00 0.00 4.00
4220 9285 4.074970 GGCCTGTGATCCTAAATACATGG 58.925 47.826 0.00 0.00 0.00 3.66
4221 9286 4.758674 CAGGCCTGTGATCCTAAATACATG 59.241 45.833 25.53 0.00 0.00 3.21
4222 9287 4.747931 GCAGGCCTGTGATCCTAAATACAT 60.748 45.833 32.81 0.00 0.00 2.29
4223 9288 3.433598 GCAGGCCTGTGATCCTAAATACA 60.434 47.826 32.81 0.00 0.00 2.29
4224 9289 3.142174 GCAGGCCTGTGATCCTAAATAC 58.858 50.000 32.81 8.48 0.00 1.89
4225 9290 2.224281 CGCAGGCCTGTGATCCTAAATA 60.224 50.000 37.91 0.00 43.32 1.40
4226 9291 1.475751 CGCAGGCCTGTGATCCTAAAT 60.476 52.381 37.91 0.00 43.32 1.40
4227 9292 0.107703 CGCAGGCCTGTGATCCTAAA 60.108 55.000 37.91 0.00 43.32 1.85
4228 9293 1.264749 ACGCAGGCCTGTGATCCTAA 61.265 55.000 44.69 0.00 43.32 2.69
4229 9294 1.685765 ACGCAGGCCTGTGATCCTA 60.686 57.895 44.69 0.00 43.32 2.94
4230 9295 3.005539 ACGCAGGCCTGTGATCCT 61.006 61.111 44.69 25.01 43.32 3.24
4231 9296 2.821366 CACGCAGGCCTGTGATCC 60.821 66.667 44.69 23.11 43.32 3.36
4232 9297 3.503363 GCACGCAGGCCTGTGATC 61.503 66.667 44.69 31.54 43.32 2.92
4240 9305 1.432270 GAGTCATAAGGCACGCAGGC 61.432 60.000 0.00 0.00 44.61 4.85
4241 9306 1.148157 CGAGTCATAAGGCACGCAGG 61.148 60.000 0.00 0.00 0.00 4.85
4242 9307 1.148157 CCGAGTCATAAGGCACGCAG 61.148 60.000 0.00 0.00 0.00 5.18
4243 9308 1.153647 CCGAGTCATAAGGCACGCA 60.154 57.895 0.00 0.00 0.00 5.24
4244 9309 1.883084 CCCGAGTCATAAGGCACGC 60.883 63.158 0.00 0.00 0.00 5.34
4245 9310 1.883084 GCCCGAGTCATAAGGCACG 60.883 63.158 5.79 0.00 45.07 5.34
4246 9311 4.126524 GCCCGAGTCATAAGGCAC 57.873 61.111 5.79 0.00 45.07 5.01
4248 9313 1.889573 GCTGCCCGAGTCATAAGGC 60.890 63.158 4.04 4.04 45.96 4.35
4249 9314 1.592669 CGCTGCCCGAGTCATAAGG 60.593 63.158 0.00 0.00 40.02 2.69
4250 9315 2.240500 GCGCTGCCCGAGTCATAAG 61.241 63.158 0.00 0.00 40.02 1.73
4251 9316 2.202878 GCGCTGCCCGAGTCATAA 60.203 61.111 0.00 0.00 40.02 1.90
4252 9317 4.221422 GGCGCTGCCCGAGTCATA 62.221 66.667 7.64 0.00 44.06 2.15
4262 9327 0.320073 TTATATACACCGGGCGCTGC 60.320 55.000 7.64 0.00 0.00 5.25
4263 9328 1.796459 GTTTATATACACCGGGCGCTG 59.204 52.381 7.64 0.00 0.00 5.18
4264 9329 1.270465 GGTTTATATACACCGGGCGCT 60.270 52.381 7.64 0.00 0.00 5.92
4265 9330 1.150827 GGTTTATATACACCGGGCGC 58.849 55.000 6.32 0.00 0.00 6.53
4266 9331 2.298163 AGAGGTTTATATACACCGGGCG 59.702 50.000 6.32 0.00 38.21 6.13
4267 9332 3.070590 ACAGAGGTTTATATACACCGGGC 59.929 47.826 6.32 6.50 38.21 6.13
4268 9333 4.950205 ACAGAGGTTTATATACACCGGG 57.050 45.455 6.32 8.23 38.21 5.73
4269 9334 5.667466 ACAACAGAGGTTTATATACACCGG 58.333 41.667 11.55 0.00 38.21 5.28
4270 9335 7.760794 TGTTACAACAGAGGTTTATATACACCG 59.239 37.037 11.55 2.09 34.86 4.94
4271 9336 8.876790 GTGTTACAACAGAGGTTTATATACACC 58.123 37.037 9.69 9.69 40.05 4.16
4272 9337 9.649167 AGTGTTACAACAGAGGTTTATATACAC 57.351 33.333 0.00 0.00 40.05 2.90
4276 9341 9.959721 ATCAAGTGTTACAACAGAGGTTTATAT 57.040 29.630 0.00 0.00 40.05 0.86
4277 9342 9.431887 GATCAAGTGTTACAACAGAGGTTTATA 57.568 33.333 0.00 0.00 40.05 0.98
4278 9343 7.936847 TGATCAAGTGTTACAACAGAGGTTTAT 59.063 33.333 0.00 0.00 40.05 1.40
4279 9344 7.276658 TGATCAAGTGTTACAACAGAGGTTTA 58.723 34.615 0.00 0.00 40.05 2.01
4280 9345 6.119536 TGATCAAGTGTTACAACAGAGGTTT 58.880 36.000 0.00 0.00 40.05 3.27
4281 9346 5.680619 TGATCAAGTGTTACAACAGAGGTT 58.319 37.500 0.00 0.00 40.05 3.50
4282 9347 5.290493 TGATCAAGTGTTACAACAGAGGT 57.710 39.130 0.00 0.00 40.05 3.85
4283 9348 6.808008 ATTGATCAAGTGTTACAACAGAGG 57.192 37.500 14.54 0.00 40.05 3.69
4285 9350 9.083080 CGTATATTGATCAAGTGTTACAACAGA 57.917 33.333 14.54 0.00 40.05 3.41
4286 9351 9.083080 TCGTATATTGATCAAGTGTTACAACAG 57.917 33.333 14.54 1.76 40.05 3.16
4287 9352 8.989653 TCGTATATTGATCAAGTGTTACAACA 57.010 30.769 14.54 0.00 36.38 3.33
4288 9353 9.297586 TCTCGTATATTGATCAAGTGTTACAAC 57.702 33.333 14.54 3.41 0.00 3.32
4289 9354 9.516314 CTCTCGTATATTGATCAAGTGTTACAA 57.484 33.333 14.54 0.00 0.00 2.41
4290 9355 8.683615 ACTCTCGTATATTGATCAAGTGTTACA 58.316 33.333 14.54 4.08 0.00 2.41
4291 9356 8.959058 CACTCTCGTATATTGATCAAGTGTTAC 58.041 37.037 14.54 10.87 0.00 2.50
4292 9357 8.899771 TCACTCTCGTATATTGATCAAGTGTTA 58.100 33.333 14.54 1.60 34.63 2.41
4293 9358 7.772166 TCACTCTCGTATATTGATCAAGTGTT 58.228 34.615 14.54 0.00 34.63 3.32
4294 9359 7.334844 TCACTCTCGTATATTGATCAAGTGT 57.665 36.000 14.54 4.92 34.63 3.55
4295 9360 8.809159 AATCACTCTCGTATATTGATCAAGTG 57.191 34.615 14.54 12.32 34.39 3.16
4296 9361 9.254133 CAAATCACTCTCGTATATTGATCAAGT 57.746 33.333 14.54 7.73 0.00 3.16
4297 9362 9.468532 TCAAATCACTCTCGTATATTGATCAAG 57.531 33.333 14.54 0.00 0.00 3.02
4298 9363 9.987272 ATCAAATCACTCTCGTATATTGATCAA 57.013 29.630 11.26 11.26 0.00 2.57
4299 9364 9.631452 GATCAAATCACTCTCGTATATTGATCA 57.369 33.333 16.16 0.00 0.00 2.92
4300 9365 9.081997 GGATCAAATCACTCTCGTATATTGATC 57.918 37.037 13.84 13.84 0.00 2.92
4301 9366 8.811017 AGGATCAAATCACTCTCGTATATTGAT 58.189 33.333 0.00 0.00 0.00 2.57
4302 9367 8.183104 AGGATCAAATCACTCTCGTATATTGA 57.817 34.615 0.00 0.00 0.00 2.57
4303 9368 7.543868 GGAGGATCAAATCACTCTCGTATATTG 59.456 40.741 0.00 0.00 36.25 1.90
4304 9369 7.233553 TGGAGGATCAAATCACTCTCGTATATT 59.766 37.037 0.00 0.00 36.25 1.28
4305 9370 6.721668 TGGAGGATCAAATCACTCTCGTATAT 59.278 38.462 0.00 0.00 36.25 0.86
4306 9371 6.068670 TGGAGGATCAAATCACTCTCGTATA 58.931 40.000 0.00 0.00 36.25 1.47
4307 9372 4.895889 TGGAGGATCAAATCACTCTCGTAT 59.104 41.667 0.00 0.00 36.25 3.06
4308 9373 4.278310 TGGAGGATCAAATCACTCTCGTA 58.722 43.478 0.00 0.00 36.25 3.43
4309 9374 3.099905 TGGAGGATCAAATCACTCTCGT 58.900 45.455 0.00 0.00 36.25 4.18
4310 9375 3.808466 TGGAGGATCAAATCACTCTCG 57.192 47.619 0.00 0.00 36.25 4.04
4311 9376 5.096443 AGTTGGAGGATCAAATCACTCTC 57.904 43.478 0.00 0.00 36.25 3.20
4312 9377 5.251764 CAAGTTGGAGGATCAAATCACTCT 58.748 41.667 0.00 0.00 36.25 3.24
4313 9378 4.397417 CCAAGTTGGAGGATCAAATCACTC 59.603 45.833 17.60 0.00 40.96 3.51
4314 9379 4.202609 ACCAAGTTGGAGGATCAAATCACT 60.203 41.667 28.80 0.00 40.96 3.41
4315 9380 4.082125 ACCAAGTTGGAGGATCAAATCAC 58.918 43.478 28.80 0.00 40.96 3.06
4316 9381 4.387026 ACCAAGTTGGAGGATCAAATCA 57.613 40.909 28.80 0.00 40.96 2.57
4317 9382 6.122277 TGATACCAAGTTGGAGGATCAAATC 58.878 40.000 28.80 15.30 40.96 2.17
4318 9383 6.078456 TGATACCAAGTTGGAGGATCAAAT 57.922 37.500 28.80 5.01 40.96 2.32
4319 9384 5.500234 CTGATACCAAGTTGGAGGATCAAA 58.500 41.667 28.80 11.08 40.96 2.69
4320 9385 4.080356 CCTGATACCAAGTTGGAGGATCAA 60.080 45.833 28.80 14.80 40.96 2.57
4321 9386 3.455910 CCTGATACCAAGTTGGAGGATCA 59.544 47.826 28.80 26.02 40.96 2.92
4322 9387 3.456277 ACCTGATACCAAGTTGGAGGATC 59.544 47.826 28.80 23.44 40.96 3.36
4323 9388 3.464828 ACCTGATACCAAGTTGGAGGAT 58.535 45.455 28.80 17.02 40.96 3.24
4324 9389 2.915869 ACCTGATACCAAGTTGGAGGA 58.084 47.619 28.80 13.04 40.96 3.71
4325 9390 4.138487 GTACCTGATACCAAGTTGGAGG 57.862 50.000 28.80 24.14 40.96 4.30
4336 9401 1.049402 GAGGGCCTGGTACCTGATAC 58.951 60.000 12.95 8.74 37.18 2.24
4337 9402 0.105142 GGAGGGCCTGGTACCTGATA 60.105 60.000 12.95 0.00 37.18 2.15
4338 9403 1.384643 GGAGGGCCTGGTACCTGAT 60.385 63.158 12.95 3.30 37.18 2.90
4339 9404 1.226104 TAGGAGGGCCTGGTACCTGA 61.226 60.000 12.95 0.00 46.45 3.86
4340 9405 1.049289 GTAGGAGGGCCTGGTACCTG 61.049 65.000 12.95 12.94 46.45 4.00
4341 9406 1.229626 AGTAGGAGGGCCTGGTACCT 61.230 60.000 12.95 14.42 46.45 3.08
4342 9407 0.759812 GAGTAGGAGGGCCTGGTACC 60.760 65.000 12.95 5.65 46.45 3.34
4343 9408 0.262285 AGAGTAGGAGGGCCTGGTAC 59.738 60.000 12.95 12.46 46.45 3.34
4344 9409 0.261991 CAGAGTAGGAGGGCCTGGTA 59.738 60.000 12.95 0.00 46.45 3.25
4345 9410 1.002274 CAGAGTAGGAGGGCCTGGT 59.998 63.158 12.95 0.00 46.45 4.00
4346 9411 1.002274 ACAGAGTAGGAGGGCCTGG 59.998 63.158 12.95 0.00 46.45 4.45
4347 9412 1.388065 CGACAGAGTAGGAGGGCCTG 61.388 65.000 12.95 0.00 46.45 4.85
4349 9414 2.787567 GCGACAGAGTAGGAGGGCC 61.788 68.421 0.00 0.00 0.00 5.80
4350 9415 2.787567 GGCGACAGAGTAGGAGGGC 61.788 68.421 0.00 0.00 0.00 5.19
4351 9416 1.379977 TGGCGACAGAGTAGGAGGG 60.380 63.158 0.00 0.00 35.01 4.30
4352 9417 4.338815 TGGCGACAGAGTAGGAGG 57.661 61.111 0.00 0.00 35.01 4.30
4368 9433 4.899239 GAGCCGGGCGGAGTCATG 62.899 72.222 14.39 0.00 37.50 3.07
4418 9483 4.824515 AGGACGAGAGGGAGCCCG 62.825 72.222 0.00 0.00 41.95 6.13
4419 9484 2.835895 GAGGACGAGAGGGAGCCC 60.836 72.222 0.00 0.00 0.00 5.19
4420 9485 3.213402 CGAGGACGAGAGGGAGCC 61.213 72.222 0.00 0.00 42.66 4.70
4421 9486 3.213402 CCGAGGACGAGAGGGAGC 61.213 72.222 0.00 0.00 42.66 4.70
4422 9487 3.213402 GCCGAGGACGAGAGGGAG 61.213 72.222 0.00 0.00 42.66 4.30
4425 9490 3.878519 GTCGCCGAGGACGAGAGG 61.879 72.222 8.45 0.00 40.80 3.69
4426 9491 2.820479 AGTCGCCGAGGACGAGAG 60.820 66.667 8.45 0.00 40.80 3.20
4427 9492 3.125573 CAGTCGCCGAGGACGAGA 61.126 66.667 8.45 0.00 40.80 4.04
4428 9493 4.838486 GCAGTCGCCGAGGACGAG 62.838 72.222 8.45 1.58 40.80 4.18
4453 9518 3.382832 CGAGGTCGCCAAGGAGGT 61.383 66.667 0.00 0.00 40.61 3.85
4474 9539 2.750237 GATGAACGGGGTGGTGCC 60.750 66.667 0.00 0.00 0.00 5.01
4475 9540 1.303317 AAGATGAACGGGGTGGTGC 60.303 57.895 0.00 0.00 0.00 5.01
4476 9541 0.324943 AGAAGATGAACGGGGTGGTG 59.675 55.000 0.00 0.00 0.00 4.17
4477 9542 0.613777 GAGAAGATGAACGGGGTGGT 59.386 55.000 0.00 0.00 0.00 4.16
4478 9543 0.107654 GGAGAAGATGAACGGGGTGG 60.108 60.000 0.00 0.00 0.00 4.61
4479 9544 0.460284 CGGAGAAGATGAACGGGGTG 60.460 60.000 0.00 0.00 0.00 4.61
4480 9545 1.614241 CCGGAGAAGATGAACGGGGT 61.614 60.000 0.00 0.00 40.79 4.95
4481 9546 1.144057 CCGGAGAAGATGAACGGGG 59.856 63.158 0.00 0.00 40.79 5.73
4482 9547 1.521681 GCCGGAGAAGATGAACGGG 60.522 63.158 5.05 0.00 44.39 5.28
4483 9548 1.878522 CGCCGGAGAAGATGAACGG 60.879 63.158 5.05 0.00 46.78 4.44
4484 9549 2.517450 GCGCCGGAGAAGATGAACG 61.517 63.158 10.31 0.00 0.00 3.95
4485 9550 2.174319 GGCGCCGGAGAAGATGAAC 61.174 63.158 12.58 0.00 0.00 3.18
4486 9551 2.186903 GGCGCCGGAGAAGATGAA 59.813 61.111 12.58 0.00 0.00 2.57
4487 9552 2.759973 AGGCGCCGGAGAAGATGA 60.760 61.111 23.20 0.00 0.00 2.92
4488 9553 2.279784 GAGGCGCCGGAGAAGATG 60.280 66.667 23.20 0.00 0.00 2.90
4489 9554 2.443016 AGAGGCGCCGGAGAAGAT 60.443 61.111 23.20 0.00 0.00 2.40
4490 9555 3.452786 CAGAGGCGCCGGAGAAGA 61.453 66.667 23.20 0.00 0.00 2.87
4491 9556 4.521062 CCAGAGGCGCCGGAGAAG 62.521 72.222 23.20 9.05 0.00 2.85
4502 9567 4.767255 GACCGGTGCTGCCAGAGG 62.767 72.222 14.63 0.00 36.97 3.69
4503 9568 4.767255 GGACCGGTGCTGCCAGAG 62.767 72.222 20.19 0.00 36.97 3.35
4508 9573 4.459089 GAGAGGGACCGGTGCTGC 62.459 72.222 26.18 17.24 0.00 5.25
4509 9574 2.997315 TGAGAGGGACCGGTGCTG 60.997 66.667 26.18 0.00 0.00 4.41
4510 9575 2.681778 CTGAGAGGGACCGGTGCT 60.682 66.667 26.18 11.87 0.00 4.40
4511 9576 2.508586 GAACTGAGAGGGACCGGTGC 62.509 65.000 19.24 19.24 0.00 5.01
4512 9577 1.592223 GAACTGAGAGGGACCGGTG 59.408 63.158 14.63 0.00 0.00 4.94
4513 9578 1.977544 CGAACTGAGAGGGACCGGT 60.978 63.158 6.92 6.92 0.00 5.28
4514 9579 2.885861 CGAACTGAGAGGGACCGG 59.114 66.667 0.00 0.00 0.00 5.28
4515 9580 2.182030 GCGAACTGAGAGGGACCG 59.818 66.667 0.00 0.00 0.00 4.79
4516 9581 2.579738 GGCGAACTGAGAGGGACC 59.420 66.667 0.00 0.00 0.00 4.46
4517 9582 2.579738 GGGCGAACTGAGAGGGAC 59.420 66.667 0.00 0.00 0.00 4.46
4518 9583 2.683933 GGGGCGAACTGAGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
4519 9584 2.685380 AGGGGCGAACTGAGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
4520 9585 1.671901 GAGAGGGGCGAACTGAGAGG 61.672 65.000 0.00 0.00 0.00 3.69
4521 9586 0.682855 AGAGAGGGGCGAACTGAGAG 60.683 60.000 0.00 0.00 0.00 3.20
4522 9587 0.251832 AAGAGAGGGGCGAACTGAGA 60.252 55.000 0.00 0.00 0.00 3.27
4523 9588 0.174617 GAAGAGAGGGGCGAACTGAG 59.825 60.000 0.00 0.00 0.00 3.35
4524 9589 0.541998 TGAAGAGAGGGGCGAACTGA 60.542 55.000 0.00 0.00 0.00 3.41
4525 9590 0.390472 GTGAAGAGAGGGGCGAACTG 60.390 60.000 0.00 0.00 0.00 3.16
4526 9591 1.878656 CGTGAAGAGAGGGGCGAACT 61.879 60.000 0.00 0.00 0.00 3.01
4527 9592 1.446272 CGTGAAGAGAGGGGCGAAC 60.446 63.158 0.00 0.00 0.00 3.95
4528 9593 1.874345 GACGTGAAGAGAGGGGCGAA 61.874 60.000 0.00 0.00 0.00 4.70
4529 9594 2.282958 ACGTGAAGAGAGGGGCGA 60.283 61.111 0.00 0.00 0.00 5.54
4530 9595 2.182030 GACGTGAAGAGAGGGGCG 59.818 66.667 0.00 0.00 0.00 6.13
4531 9596 1.950973 GAGGACGTGAAGAGAGGGGC 61.951 65.000 0.00 0.00 0.00 5.80
4532 9597 0.612174 TGAGGACGTGAAGAGAGGGG 60.612 60.000 0.00 0.00 0.00 4.79
4533 9598 0.528470 GTGAGGACGTGAAGAGAGGG 59.472 60.000 0.00 0.00 0.00 4.30
4534 9599 0.528470 GGTGAGGACGTGAAGAGAGG 59.472 60.000 0.00 0.00 0.00 3.69
4535 9600 0.528470 GGGTGAGGACGTGAAGAGAG 59.472 60.000 0.00 0.00 0.00 3.20
4536 9601 0.112606 AGGGTGAGGACGTGAAGAGA 59.887 55.000 0.00 0.00 0.00 3.10
4537 9602 0.528470 GAGGGTGAGGACGTGAAGAG 59.472 60.000 0.00 0.00 0.00 2.85
4538 9603 0.112606 AGAGGGTGAGGACGTGAAGA 59.887 55.000 0.00 0.00 0.00 2.87
4539 9604 0.244994 CAGAGGGTGAGGACGTGAAG 59.755 60.000 0.00 0.00 0.00 3.02
4540 9605 1.816863 GCAGAGGGTGAGGACGTGAA 61.817 60.000 0.00 0.00 0.00 3.18
4541 9606 2.276116 GCAGAGGGTGAGGACGTGA 61.276 63.158 0.00 0.00 0.00 4.35
4542 9607 2.262915 GCAGAGGGTGAGGACGTG 59.737 66.667 0.00 0.00 0.00 4.49
4543 9608 3.374402 CGCAGAGGGTGAGGACGT 61.374 66.667 0.00 0.00 0.00 4.34
4544 9609 4.803426 GCGCAGAGGGTGAGGACG 62.803 72.222 0.30 0.00 0.00 4.79
4545 9610 4.459089 GGCGCAGAGGGTGAGGAC 62.459 72.222 10.83 0.00 0.00 3.85
4547 9612 4.767255 GTGGCGCAGAGGGTGAGG 62.767 72.222 10.83 0.00 0.00 3.86
4548 9613 4.767255 GGTGGCGCAGAGGGTGAG 62.767 72.222 10.83 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.