Multiple sequence alignment - TraesCS5A01G461500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G461500 chr5A 100.000 2754 0 0 1 2754 641732098 641734851 0.000000e+00 5086.0
1 TraesCS5A01G461500 chr5A 88.079 151 14 4 597 747 641683210 641683064 2.820000e-40 176.0
2 TraesCS5A01G461500 chr5B 92.765 1313 56 13 759 2034 644889441 644890751 0.000000e+00 1862.0
3 TraesCS5A01G461500 chr5B 87.748 302 23 9 2318 2615 644897647 644897938 9.450000e-90 340.0
4 TraesCS5A01G461500 chr5B 82.778 360 30 9 2 360 644888868 644889196 2.680000e-75 292.0
5 TraesCS5A01G461500 chr5B 79.474 380 43 22 12 363 644865579 644865207 1.270000e-58 237.0
6 TraesCS5A01G461500 chr5B 92.308 117 3 2 2644 2754 644890820 644890936 7.890000e-36 161.0
7 TraesCS5A01G461500 chr5B 83.721 86 12 2 439 524 644864976 644864893 2.270000e-11 80.5
8 TraesCS5A01G461500 chr5D 87.274 1218 79 44 838 2005 513978007 513979198 0.000000e+00 1321.0
9 TraesCS5A01G461500 chr5D 86.559 372 27 13 2257 2615 513979332 513979693 3.330000e-104 388.0
10 TraesCS5A01G461500 chr5D 82.153 353 29 18 1 349 513976484 513976806 3.490000e-69 272.0
11 TraesCS5A01G461500 chr5D 82.943 299 39 9 597 893 513907168 513906880 2.720000e-65 259.0
12 TraesCS5A01G461500 chr5D 85.650 223 25 7 2348 2567 513906939 513906721 7.670000e-56 228.0
13 TraesCS5A01G461500 chr5D 78.177 362 41 19 12 346 513908102 513907752 2.160000e-46 196.0
14 TraesCS5A01G461500 chr5D 88.462 78 9 0 447 524 513907548 513907471 8.120000e-16 95.3
15 TraesCS5A01G461500 chr2B 85.874 807 67 28 989 1763 488009026 488009817 0.000000e+00 815.0
16 TraesCS5A01G461500 chr2A 92.537 402 30 0 1352 1753 581577659 581578060 6.610000e-161 577.0
17 TraesCS5A01G461500 chr2A 82.469 405 44 17 923 1310 581577181 581577575 2.040000e-86 329.0
18 TraesCS5A01G461500 chr2D 92.079 404 32 0 1352 1755 414401985 414402388 1.110000e-158 569.0
19 TraesCS5A01G461500 chr2D 85.846 325 30 9 989 1310 414401596 414401907 5.680000e-87 331.0
20 TraesCS5A01G461500 chr2D 89.744 156 16 0 2033 2188 79056319 79056164 1.670000e-47 200.0
21 TraesCS5A01G461500 chr3D 91.398 186 15 1 1580 1764 62345521 62345336 1.270000e-63 254.0
22 TraesCS5A01G461500 chr3D 91.026 156 14 0 2033 2188 441388819 441388664 7.730000e-51 211.0
23 TraesCS5A01G461500 chr3D 87.356 87 5 4 12 92 39419166 39419252 8.120000e-16 95.3
24 TraesCS5A01G461500 chr4B 91.304 161 14 0 2030 2190 438375336 438375176 1.280000e-53 220.0
25 TraesCS5A01G461500 chr3A 85.915 213 20 3 1580 1791 71235847 71235644 4.620000e-53 219.0
26 TraesCS5A01G461500 chr3A 87.500 160 17 3 2033 2191 498230086 498229929 6.060000e-42 182.0
27 TraesCS5A01G461500 chr4A 89.241 158 17 0 2030 2187 109850052 109850209 6.020000e-47 198.0
28 TraesCS5A01G461500 chr4A 90.132 152 13 1 2033 2184 136431373 136431522 2.160000e-46 196.0
29 TraesCS5A01G461500 chr6B 86.022 186 22 3 1567 1752 39324848 39324667 2.160000e-46 196.0
30 TraesCS5A01G461500 chr7B 88.272 162 17 2 2029 2189 153426760 153426920 2.800000e-45 193.0
31 TraesCS5A01G461500 chr6A 88.889 153 16 1 2033 2185 184388328 184388177 1.300000e-43 187.0
32 TraesCS5A01G461500 chr1B 87.898 157 17 2 2033 2189 632020927 632021081 1.680000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G461500 chr5A 641732098 641734851 2753 False 5086.000000 5086 100.000000 1 2754 1 chr5A.!!$F1 2753
1 TraesCS5A01G461500 chr5B 644888868 644890936 2068 False 771.666667 1862 89.283667 2 2754 3 chr5B.!!$F2 2752
2 TraesCS5A01G461500 chr5D 513976484 513979693 3209 False 660.333333 1321 85.328667 1 2615 3 chr5D.!!$F1 2614
3 TraesCS5A01G461500 chr2B 488009026 488009817 791 False 815.000000 815 85.874000 989 1763 1 chr2B.!!$F1 774
4 TraesCS5A01G461500 chr2A 581577181 581578060 879 False 453.000000 577 87.503000 923 1753 2 chr2A.!!$F1 830
5 TraesCS5A01G461500 chr2D 414401596 414402388 792 False 450.000000 569 88.962500 989 1755 2 chr2D.!!$F1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 504 0.030504 CAATGCACACAGTTGGCGAA 59.969 50.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 3355 2.632996 CCAAACTACAGTGACCCTGAGA 59.367 50.0 0.0 0.0 44.49 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.076100 GTCATGTTCAATCTCACCGCA 58.924 47.619 0.00 0.00 0.00 5.69
95 96 2.483877 GTCATGTTCAATCTCACCGCAA 59.516 45.455 0.00 0.00 0.00 4.85
96 97 3.127548 GTCATGTTCAATCTCACCGCAAT 59.872 43.478 0.00 0.00 0.00 3.56
106 107 6.998074 TCAATCTCACCGCAATTAGGATTTAT 59.002 34.615 6.18 0.00 0.00 1.40
134 139 2.672961 TTGTCGCCTGTAATCCTGAG 57.327 50.000 0.00 0.00 0.00 3.35
145 150 6.327934 CCTGTAATCCTGAGCTGAATTTTTG 58.672 40.000 0.00 0.00 0.00 2.44
154 159 6.127423 CCTGAGCTGAATTTTTGGATGAAGAT 60.127 38.462 0.00 0.00 0.00 2.40
176 181 1.688772 CATTGCCCCTGATCCTGAAG 58.311 55.000 0.00 0.00 0.00 3.02
179 184 1.965414 TGCCCCTGATCCTGAAGTAA 58.035 50.000 0.00 0.00 0.00 2.24
186 191 5.366768 CCCCTGATCCTGAAGTAATGAACTA 59.633 44.000 0.00 0.00 37.50 2.24
187 192 6.126768 CCCCTGATCCTGAAGTAATGAACTAA 60.127 42.308 0.00 0.00 37.50 2.24
188 193 7.338710 CCCTGATCCTGAAGTAATGAACTAAA 58.661 38.462 0.00 0.00 37.50 1.85
189 194 7.281100 CCCTGATCCTGAAGTAATGAACTAAAC 59.719 40.741 0.00 0.00 37.50 2.01
191 196 9.442047 CTGATCCTGAAGTAATGAACTAAACTT 57.558 33.333 0.00 0.00 37.50 2.66
192 197 9.219603 TGATCCTGAAGTAATGAACTAAACTTG 57.780 33.333 0.00 0.00 37.50 3.16
194 199 7.514721 TCCTGAAGTAATGAACTAAACTTGGT 58.485 34.615 0.00 0.00 37.50 3.67
195 200 7.996644 TCCTGAAGTAATGAACTAAACTTGGTT 59.003 33.333 0.00 0.00 37.50 3.67
196 201 8.290325 CCTGAAGTAATGAACTAAACTTGGTTC 58.710 37.037 10.73 10.73 45.44 3.62
205 210 2.514205 AAACTTGGTTCAGCATGTGC 57.486 45.000 0.00 0.00 42.49 4.57
221 226 3.435105 TGTGCAACATTCACTTTGACC 57.565 42.857 0.00 0.00 45.67 4.02
222 227 2.757314 TGTGCAACATTCACTTTGACCA 59.243 40.909 0.00 0.00 45.67 4.02
223 228 3.194329 TGTGCAACATTCACTTTGACCAA 59.806 39.130 0.00 0.00 45.67 3.67
224 229 4.141981 TGTGCAACATTCACTTTGACCAAT 60.142 37.500 0.00 0.00 45.67 3.16
225 230 4.810491 GTGCAACATTCACTTTGACCAATT 59.190 37.500 0.00 0.00 36.32 2.32
226 231 5.294060 GTGCAACATTCACTTTGACCAATTT 59.706 36.000 0.00 0.00 36.32 1.82
227 232 5.293814 TGCAACATTCACTTTGACCAATTTG 59.706 36.000 0.00 0.00 0.00 2.32
228 233 5.523188 GCAACATTCACTTTGACCAATTTGA 59.477 36.000 0.00 0.00 0.00 2.69
229 234 6.509997 GCAACATTCACTTTGACCAATTTGAC 60.510 38.462 0.00 0.00 0.00 3.18
230 235 6.219417 ACATTCACTTTGACCAATTTGACA 57.781 33.333 0.00 0.00 0.00 3.58
231 236 6.042143 ACATTCACTTTGACCAATTTGACAC 58.958 36.000 0.00 0.00 0.00 3.67
232 237 5.913137 TTCACTTTGACCAATTTGACACT 57.087 34.783 0.00 0.00 0.00 3.55
233 238 5.499139 TCACTTTGACCAATTTGACACTC 57.501 39.130 0.00 0.00 0.00 3.51
234 239 5.192927 TCACTTTGACCAATTTGACACTCT 58.807 37.500 0.00 0.00 0.00 3.24
237 242 7.502226 TCACTTTGACCAATTTGACACTCTAAT 59.498 33.333 0.00 0.00 0.00 1.73
240 245 7.815840 TTGACCAATTTGACACTCTAATTGA 57.184 32.000 16.05 0.38 45.65 2.57
255 260 9.294030 CACTCTAATTGAATTTGTATTTGCCTC 57.706 33.333 0.00 0.00 0.00 4.70
256 261 8.470002 ACTCTAATTGAATTTGTATTTGCCTCC 58.530 33.333 0.00 0.00 0.00 4.30
257 262 8.593945 TCTAATTGAATTTGTATTTGCCTCCT 57.406 30.769 0.00 0.00 0.00 3.69
258 263 8.469200 TCTAATTGAATTTGTATTTGCCTCCTG 58.531 33.333 0.00 0.00 0.00 3.86
259 264 6.610075 ATTGAATTTGTATTTGCCTCCTGT 57.390 33.333 0.00 0.00 0.00 4.00
260 265 7.716799 ATTGAATTTGTATTTGCCTCCTGTA 57.283 32.000 0.00 0.00 0.00 2.74
261 266 7.716799 TTGAATTTGTATTTGCCTCCTGTAT 57.283 32.000 0.00 0.00 0.00 2.29
262 267 7.099266 TGAATTTGTATTTGCCTCCTGTATG 57.901 36.000 0.00 0.00 0.00 2.39
263 268 6.096705 TGAATTTGTATTTGCCTCCTGTATGG 59.903 38.462 0.00 0.00 37.10 2.74
264 269 4.584638 TTGTATTTGCCTCCTGTATGGT 57.415 40.909 0.00 0.00 37.07 3.55
265 270 3.884895 TGTATTTGCCTCCTGTATGGTG 58.115 45.455 0.00 0.00 37.07 4.17
266 271 1.767759 ATTTGCCTCCTGTATGGTGC 58.232 50.000 0.00 0.00 37.07 5.01
267 272 0.323360 TTTGCCTCCTGTATGGTGCC 60.323 55.000 0.00 0.00 35.07 5.01
268 273 1.207488 TTGCCTCCTGTATGGTGCCT 61.207 55.000 0.00 0.00 35.07 4.75
289 294 4.638421 CCTCCGGCATTATGTTTTCTTGTA 59.362 41.667 0.00 0.00 0.00 2.41
313 318 3.188048 AGAAGCTGCATCTTTTGAGTTCG 59.812 43.478 3.98 0.00 0.00 3.95
327 332 2.420722 TGAGTTCGGACAACCAAAACAC 59.579 45.455 0.00 0.00 35.35 3.32
350 355 3.304659 GCATCCACCACAACTTTGTAGTG 60.305 47.826 12.17 12.17 45.96 2.74
351 356 2.294074 TCCACCACAACTTTGTAGTGC 58.706 47.619 13.31 0.00 45.35 4.40
352 357 2.020720 CCACCACAACTTTGTAGTGCA 58.979 47.619 13.31 0.00 45.35 4.57
360 365 4.941263 ACAACTTTGTAGTGCAGTTTCTCA 59.059 37.500 0.00 0.00 40.16 3.27
363 368 5.126067 ACTTTGTAGTGCAGTTTCTCATGT 58.874 37.500 0.00 0.00 31.99 3.21
365 370 5.422666 TTGTAGTGCAGTTTCTCATGTTG 57.577 39.130 0.00 0.00 0.00 3.33
367 372 1.610522 AGTGCAGTTTCTCATGTTGCC 59.389 47.619 0.00 0.00 33.98 4.52
370 375 2.429971 TGCAGTTTCTCATGTTGCCAAA 59.570 40.909 0.00 0.00 33.98 3.28
371 376 3.118847 TGCAGTTTCTCATGTTGCCAAAA 60.119 39.130 0.00 0.00 33.98 2.44
373 378 4.260334 GCAGTTTCTCATGTTGCCAAAAAC 60.260 41.667 0.00 0.00 0.00 2.43
374 379 4.869297 CAGTTTCTCATGTTGCCAAAAACA 59.131 37.500 3.75 0.00 43.82 2.83
375 380 4.869861 AGTTTCTCATGTTGCCAAAAACAC 59.130 37.500 3.75 0.00 42.56 3.32
376 381 3.451141 TCTCATGTTGCCAAAAACACC 57.549 42.857 0.00 0.00 42.56 4.16
380 385 3.387374 TCATGTTGCCAAAAACACCAGAT 59.613 39.130 0.00 0.00 42.56 2.90
381 386 3.902881 TGTTGCCAAAAACACCAGATT 57.097 38.095 0.00 0.00 35.16 2.40
382 387 5.069648 TCATGTTGCCAAAAACACCAGATTA 59.930 36.000 0.00 0.00 42.56 1.75
383 388 4.942852 TGTTGCCAAAAACACCAGATTAG 58.057 39.130 0.00 0.00 35.16 1.73
384 389 4.202202 TGTTGCCAAAAACACCAGATTAGG 60.202 41.667 0.00 0.00 35.16 2.69
385 390 3.838565 TGCCAAAAACACCAGATTAGGA 58.161 40.909 0.00 0.00 0.00 2.94
386 391 4.219115 TGCCAAAAACACCAGATTAGGAA 58.781 39.130 0.00 0.00 0.00 3.36
389 394 6.183361 TGCCAAAAACACCAGATTAGGAAATT 60.183 34.615 0.00 0.00 0.00 1.82
391 396 8.040727 GCCAAAAACACCAGATTAGGAAATTAT 58.959 33.333 0.00 0.00 0.00 1.28
392 397 9.942850 CCAAAAACACCAGATTAGGAAATTATT 57.057 29.630 0.00 0.00 0.00 1.40
398 403 9.308000 ACACCAGATTAGGAAATTATTTGTTCA 57.692 29.630 0.00 0.00 0.00 3.18
455 465 7.713764 ATCTTGTAAACAATGAGCAAAAACC 57.286 32.000 0.00 0.00 35.02 3.27
457 467 3.799420 TGTAAACAATGAGCAAAAACCGC 59.201 39.130 0.00 0.00 0.00 5.68
460 470 1.680735 ACAATGAGCAAAAACCGCTGA 59.319 42.857 0.00 0.00 40.63 4.26
461 471 2.297033 ACAATGAGCAAAAACCGCTGAT 59.703 40.909 0.00 0.00 40.63 2.90
462 472 3.243839 ACAATGAGCAAAAACCGCTGATT 60.244 39.130 0.00 0.00 42.91 2.57
463 473 2.704725 TGAGCAAAAACCGCTGATTC 57.295 45.000 0.00 0.00 40.63 2.52
464 474 1.952990 TGAGCAAAAACCGCTGATTCA 59.047 42.857 0.00 0.00 40.63 2.57
465 475 2.360483 TGAGCAAAAACCGCTGATTCAA 59.640 40.909 0.00 0.00 40.63 2.69
466 476 3.181482 TGAGCAAAAACCGCTGATTCAAA 60.181 39.130 0.00 0.00 40.63 2.69
467 477 3.123050 AGCAAAAACCGCTGATTCAAAC 58.877 40.909 0.00 0.00 38.60 2.93
468 478 3.123050 GCAAAAACCGCTGATTCAAACT 58.877 40.909 0.00 0.00 0.00 2.66
469 479 3.555547 GCAAAAACCGCTGATTCAAACTT 59.444 39.130 0.00 0.00 0.00 2.66
470 480 4.550639 GCAAAAACCGCTGATTCAAACTTG 60.551 41.667 0.00 0.00 0.00 3.16
471 481 4.385358 AAAACCGCTGATTCAAACTTGT 57.615 36.364 0.00 0.00 0.00 3.16
472 482 5.508200 AAAACCGCTGATTCAAACTTGTA 57.492 34.783 0.00 0.00 0.00 2.41
473 483 5.508200 AAACCGCTGATTCAAACTTGTAA 57.492 34.783 0.00 0.00 0.00 2.41
474 484 5.508200 AACCGCTGATTCAAACTTGTAAA 57.492 34.783 0.00 0.00 0.00 2.01
475 485 4.855531 ACCGCTGATTCAAACTTGTAAAC 58.144 39.130 0.00 0.00 0.00 2.01
476 486 4.336993 ACCGCTGATTCAAACTTGTAAACA 59.663 37.500 0.00 0.00 0.00 2.83
477 487 5.163602 ACCGCTGATTCAAACTTGTAAACAA 60.164 36.000 0.00 0.00 0.00 2.83
478 488 5.920273 CCGCTGATTCAAACTTGTAAACAAT 59.080 36.000 0.00 0.00 35.02 2.71
479 489 6.129115 CCGCTGATTCAAACTTGTAAACAATG 60.129 38.462 0.00 0.00 35.02 2.82
480 490 6.584056 GCTGATTCAAACTTGTAAACAATGC 58.416 36.000 0.00 0.00 35.02 3.56
481 491 6.200665 GCTGATTCAAACTTGTAAACAATGCA 59.799 34.615 0.00 0.00 35.02 3.96
482 492 7.462109 TGATTCAAACTTGTAAACAATGCAC 57.538 32.000 0.00 0.00 35.02 4.57
483 493 7.038048 TGATTCAAACTTGTAAACAATGCACA 58.962 30.769 0.00 0.00 35.02 4.57
484 494 6.639671 TTCAAACTTGTAAACAATGCACAC 57.360 33.333 0.00 0.00 35.02 3.82
485 495 5.714047 TCAAACTTGTAAACAATGCACACA 58.286 33.333 0.00 0.00 35.02 3.72
486 496 5.804473 TCAAACTTGTAAACAATGCACACAG 59.196 36.000 0.00 0.00 35.02 3.66
487 497 4.981806 ACTTGTAAACAATGCACACAGT 57.018 36.364 0.00 0.00 35.02 3.55
488 498 5.323371 ACTTGTAAACAATGCACACAGTT 57.677 34.783 0.00 0.00 35.02 3.16
489 499 5.101628 ACTTGTAAACAATGCACACAGTTG 58.898 37.500 0.00 0.00 35.02 3.16
490 500 4.039151 TGTAAACAATGCACACAGTTGG 57.961 40.909 0.00 0.00 0.00 3.77
491 501 1.938625 AAACAATGCACACAGTTGGC 58.061 45.000 0.00 0.00 0.00 4.52
492 502 0.248990 AACAATGCACACAGTTGGCG 60.249 50.000 0.00 0.00 0.00 5.69
493 503 1.100463 ACAATGCACACAGTTGGCGA 61.100 50.000 0.00 0.00 0.00 5.54
494 504 0.030504 CAATGCACACAGTTGGCGAA 59.969 50.000 0.00 0.00 0.00 4.70
495 505 0.311790 AATGCACACAGTTGGCGAAG 59.688 50.000 0.00 0.00 0.00 3.79
496 506 0.534877 ATGCACACAGTTGGCGAAGA 60.535 50.000 0.00 0.00 0.00 2.87
497 507 1.159713 TGCACACAGTTGGCGAAGAG 61.160 55.000 0.00 0.00 0.00 2.85
507 517 4.275524 GCGAAGAGCTTGAGCACT 57.724 55.556 5.70 1.14 43.66 4.40
514 524 4.615588 AAGAGCTTGAGCACTTCTACTT 57.384 40.909 9.43 0.00 46.30 2.24
515 525 3.924144 AGAGCTTGAGCACTTCTACTTG 58.076 45.455 5.70 0.00 45.16 3.16
516 526 2.414825 GAGCTTGAGCACTTCTACTTGC 59.585 50.000 5.70 0.00 45.16 4.01
517 527 2.146342 GCTTGAGCACTTCTACTTGCA 58.854 47.619 0.00 0.00 41.48 4.08
518 528 2.549754 GCTTGAGCACTTCTACTTGCAA 59.450 45.455 0.00 0.00 41.48 4.08
529 539 5.932661 CTTCTACTTGCAAGAAGCTTAACC 58.067 41.667 32.50 0.00 42.44 2.85
535 545 5.770162 ACTTGCAAGAAGCTTAACCTACAAT 59.230 36.000 32.50 0.70 45.94 2.71
540 550 6.923508 GCAAGAAGCTTAACCTACAATTGTTT 59.076 34.615 17.78 7.81 41.15 2.83
541 551 8.079809 GCAAGAAGCTTAACCTACAATTGTTTA 58.920 33.333 17.78 6.76 41.15 2.01
545 555 9.698617 GAAGCTTAACCTACAATTGTTTATACG 57.301 33.333 17.78 4.79 0.00 3.06
546 556 7.691158 AGCTTAACCTACAATTGTTTATACGC 58.309 34.615 17.78 13.25 0.00 4.42
550 560 9.664332 TTAACCTACAATTGTTTATACGCCTAA 57.336 29.630 17.78 0.88 0.00 2.69
567 577 4.096382 CGCCTAAAACAAATGTAGGATGCT 59.904 41.667 5.27 0.00 37.21 3.79
591 603 5.713389 TCATGCTTTCAAATGGAGAATCAGT 59.287 36.000 0.00 0.00 36.25 3.41
609 621 7.555554 AGAATCAGTCCATGAACTAAATCTTGG 59.444 37.037 0.00 3.52 42.53 3.61
627 639 0.899717 GGAGGCATGCAGGACCAAAA 60.900 55.000 21.36 0.00 0.00 2.44
642 660 9.651913 GCAGGACCAAAATCATATTTTTAAGAA 57.348 29.630 0.00 0.00 0.00 2.52
671 689 6.902224 AAACTGGACAACTTTAAAACATGC 57.098 33.333 0.00 0.00 0.00 4.06
672 690 4.944048 ACTGGACAACTTTAAAACATGCC 58.056 39.130 0.00 0.00 0.00 4.40
688 706 1.908344 TGCCTTGCTGCATTCTGTAA 58.092 45.000 1.84 0.00 36.04 2.41
689 707 1.541147 TGCCTTGCTGCATTCTGTAAC 59.459 47.619 1.84 0.00 36.04 2.50
692 710 3.341823 CCTTGCTGCATTCTGTAACTCT 58.658 45.455 1.84 0.00 0.00 3.24
694 712 2.079158 TGCTGCATTCTGTAACTCTGC 58.921 47.619 0.00 0.00 0.00 4.26
695 713 2.289882 TGCTGCATTCTGTAACTCTGCT 60.290 45.455 0.00 0.00 34.02 4.24
696 714 2.746362 GCTGCATTCTGTAACTCTGCTT 59.254 45.455 0.00 0.00 34.02 3.91
697 715 3.181512 GCTGCATTCTGTAACTCTGCTTC 60.182 47.826 0.00 0.00 34.02 3.86
698 716 3.338249 TGCATTCTGTAACTCTGCTTCC 58.662 45.455 0.00 0.00 34.02 3.46
699 717 2.680339 GCATTCTGTAACTCTGCTTCCC 59.320 50.000 0.00 0.00 0.00 3.97
700 718 3.869912 GCATTCTGTAACTCTGCTTCCCA 60.870 47.826 0.00 0.00 0.00 4.37
702 720 3.402628 TCTGTAACTCTGCTTCCCAAC 57.597 47.619 0.00 0.00 0.00 3.77
703 721 2.972713 TCTGTAACTCTGCTTCCCAACT 59.027 45.455 0.00 0.00 0.00 3.16
704 722 4.157246 TCTGTAACTCTGCTTCCCAACTA 58.843 43.478 0.00 0.00 0.00 2.24
705 723 4.591498 TCTGTAACTCTGCTTCCCAACTAA 59.409 41.667 0.00 0.00 0.00 2.24
706 724 4.638304 TGTAACTCTGCTTCCCAACTAAC 58.362 43.478 0.00 0.00 0.00 2.34
708 726 3.857157 ACTCTGCTTCCCAACTAACAA 57.143 42.857 0.00 0.00 0.00 2.83
709 727 4.373156 ACTCTGCTTCCCAACTAACAAT 57.627 40.909 0.00 0.00 0.00 2.71
710 728 4.074970 ACTCTGCTTCCCAACTAACAATG 58.925 43.478 0.00 0.00 0.00 2.82
711 729 3.420893 TCTGCTTCCCAACTAACAATGG 58.579 45.455 0.00 0.00 36.42 3.16
713 731 3.571590 TGCTTCCCAACTAACAATGGTT 58.428 40.909 0.00 0.00 41.06 3.67
714 732 4.730966 TGCTTCCCAACTAACAATGGTTA 58.269 39.130 0.00 0.00 38.45 2.85
716 734 5.777732 TGCTTCCCAACTAACAATGGTTAAT 59.222 36.000 0.00 0.00 38.92 1.40
717 735 6.268847 TGCTTCCCAACTAACAATGGTTAATT 59.731 34.615 0.00 0.00 38.92 1.40
718 736 6.811665 GCTTCCCAACTAACAATGGTTAATTC 59.188 38.462 0.00 0.00 38.92 2.17
720 738 7.461182 TCCCAACTAACAATGGTTAATTCAG 57.539 36.000 0.00 0.00 38.92 3.02
722 740 7.507616 TCCCAACTAACAATGGTTAATTCAGTT 59.492 33.333 0.00 0.00 38.92 3.16
723 741 8.147704 CCCAACTAACAATGGTTAATTCAGTTT 58.852 33.333 0.00 0.00 38.92 2.66
735 753 9.753674 TGGTTAATTCAGTTTAGATTTCCATCT 57.246 29.630 0.00 0.00 42.83 2.90
743 761 9.035890 TCAGTTTAGATTTCCATCTAGTTGAGA 57.964 33.333 2.20 0.00 42.04 3.27
750 768 9.917887 AGATTTCCATCTAGTTGAGAAATTCAT 57.082 29.630 19.90 12.62 38.06 2.57
751 769 9.947669 GATTTCCATCTAGTTGAGAAATTCATG 57.052 33.333 19.90 0.00 37.30 3.07
754 772 8.498054 TCCATCTAGTTGAGAAATTCATGTTC 57.502 34.615 2.20 0.00 37.85 3.18
904 1731 9.836076 GTATTGGTAAAAATACAACCTCTGAAC 57.164 33.333 2.92 0.00 40.98 3.18
1032 1873 0.839853 ACCTCTCAAGCTTCCAGGCT 60.840 55.000 12.84 0.00 45.30 4.58
1096 1937 3.050275 GGCCAAGAGCGGTGACAC 61.050 66.667 0.00 0.00 45.17 3.67
1130 1977 4.148825 GTCGGGCAGGCGATCAGT 62.149 66.667 0.00 0.00 0.00 3.41
1336 2196 6.154203 ACCATATATAGCACCTCGATCATG 57.846 41.667 0.00 0.00 0.00 3.07
1345 2205 3.464907 CACCTCGATCATGCTCAAAGAT 58.535 45.455 0.00 0.00 0.00 2.40
1369 2289 2.775960 TCATGGTGCAGAGGAGATCAAT 59.224 45.455 0.00 0.00 0.00 2.57
1783 2710 1.604604 TGCTTGCTAGGACAAACACC 58.395 50.000 0.00 0.00 0.00 4.16
1845 2791 7.612677 ACTGAGAAATACCACGATTTTAGTCT 58.387 34.615 0.00 0.00 0.00 3.24
1855 2801 7.712797 ACCACGATTTTAGTCTTGAACAATTT 58.287 30.769 0.00 0.00 0.00 1.82
1856 2802 7.647715 ACCACGATTTTAGTCTTGAACAATTTG 59.352 33.333 0.00 0.00 0.00 2.32
1857 2803 7.114811 CCACGATTTTAGTCTTGAACAATTTGG 59.885 37.037 0.78 0.00 0.00 3.28
1858 2804 7.647715 CACGATTTTAGTCTTGAACAATTTGGT 59.352 33.333 0.78 0.00 0.00 3.67
1930 2876 4.881273 AGTTAATTATGTGAATGCTCCGCA 59.119 37.500 0.00 0.00 44.86 5.69
1975 2923 3.527533 TCAGTTGCAGTGTTCGTTAACT 58.472 40.909 3.71 0.00 36.51 2.24
1976 2924 3.308595 TCAGTTGCAGTGTTCGTTAACTG 59.691 43.478 3.71 0.00 45.37 3.16
1981 2929 4.190001 TGCAGTGTTCGTTAACTGGTTAA 58.810 39.130 3.71 2.26 43.29 2.01
1997 2947 5.245977 ACTGGTTAATTGATTCAGTTTGGGG 59.754 40.000 0.00 0.00 35.44 4.96
2037 2987 5.179533 GGTTTCACCTTCTTCAGATACTCC 58.820 45.833 0.00 0.00 34.73 3.85
2038 2988 5.179533 GTTTCACCTTCTTCAGATACTCCC 58.820 45.833 0.00 0.00 0.00 4.30
2039 2989 4.338795 TCACCTTCTTCAGATACTCCCT 57.661 45.455 0.00 0.00 0.00 4.20
2040 2990 4.282496 TCACCTTCTTCAGATACTCCCTC 58.718 47.826 0.00 0.00 0.00 4.30
2041 2991 3.386402 CACCTTCTTCAGATACTCCCTCC 59.614 52.174 0.00 0.00 0.00 4.30
2042 2992 2.625790 CCTTCTTCAGATACTCCCTCCG 59.374 54.545 0.00 0.00 0.00 4.63
2043 2993 1.693627 TCTTCAGATACTCCCTCCGC 58.306 55.000 0.00 0.00 0.00 5.54
2044 2994 1.215673 TCTTCAGATACTCCCTCCGCT 59.784 52.381 0.00 0.00 0.00 5.52
2045 2995 1.611491 CTTCAGATACTCCCTCCGCTC 59.389 57.143 0.00 0.00 0.00 5.03
2046 2996 0.551396 TCAGATACTCCCTCCGCTCA 59.449 55.000 0.00 0.00 0.00 4.26
2047 2997 0.671251 CAGATACTCCCTCCGCTCAC 59.329 60.000 0.00 0.00 0.00 3.51
2048 2998 0.259065 AGATACTCCCTCCGCTCACA 59.741 55.000 0.00 0.00 0.00 3.58
2049 2999 1.112113 GATACTCCCTCCGCTCACAA 58.888 55.000 0.00 0.00 0.00 3.33
2050 3000 1.480954 GATACTCCCTCCGCTCACAAA 59.519 52.381 0.00 0.00 0.00 2.83
2051 3001 1.568504 TACTCCCTCCGCTCACAAAT 58.431 50.000 0.00 0.00 0.00 2.32
2052 3002 1.568504 ACTCCCTCCGCTCACAAATA 58.431 50.000 0.00 0.00 0.00 1.40
2053 3003 2.119495 ACTCCCTCCGCTCACAAATAT 58.881 47.619 0.00 0.00 0.00 1.28
2054 3004 3.305720 ACTCCCTCCGCTCACAAATATA 58.694 45.455 0.00 0.00 0.00 0.86
2055 3005 3.709653 ACTCCCTCCGCTCACAAATATAA 59.290 43.478 0.00 0.00 0.00 0.98
2056 3006 4.202264 ACTCCCTCCGCTCACAAATATAAG 60.202 45.833 0.00 0.00 0.00 1.73
2057 3007 3.964688 TCCCTCCGCTCACAAATATAAGA 59.035 43.478 0.00 0.00 0.00 2.10
2058 3008 4.593206 TCCCTCCGCTCACAAATATAAGAT 59.407 41.667 0.00 0.00 0.00 2.40
2059 3009 4.692625 CCCTCCGCTCACAAATATAAGATG 59.307 45.833 0.00 0.00 0.00 2.90
2060 3010 5.300752 CCTCCGCTCACAAATATAAGATGT 58.699 41.667 0.00 0.00 0.00 3.06
2061 3011 5.760253 CCTCCGCTCACAAATATAAGATGTT 59.240 40.000 0.00 0.00 0.00 2.71
2062 3012 6.260936 CCTCCGCTCACAAATATAAGATGTTT 59.739 38.462 0.00 0.00 0.00 2.83
2063 3013 7.201732 CCTCCGCTCACAAATATAAGATGTTTT 60.202 37.037 0.00 0.00 0.00 2.43
2064 3014 7.471721 TCCGCTCACAAATATAAGATGTTTTG 58.528 34.615 0.00 0.00 35.66 2.44
2065 3015 7.335673 TCCGCTCACAAATATAAGATGTTTTGA 59.664 33.333 0.00 0.00 34.13 2.69
2066 3016 7.967854 CCGCTCACAAATATAAGATGTTTTGAA 59.032 33.333 0.00 0.00 34.13 2.69
2067 3017 9.507280 CGCTCACAAATATAAGATGTTTTGAAT 57.493 29.630 0.00 0.00 34.13 2.57
2115 3065 5.883661 CTGAAATCAGTGAACAAACACACT 58.116 37.500 0.00 0.00 46.32 3.55
2116 3066 6.993786 TGAAATCAGTGAACAAACACACTA 57.006 33.333 0.00 0.00 44.07 2.74
2117 3067 7.384439 TGAAATCAGTGAACAAACACACTAA 57.616 32.000 0.00 0.00 44.07 2.24
2118 3068 7.821652 TGAAATCAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 44.07 1.85
2119 3069 8.300286 TGAAATCAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 44.07 1.52
2120 3070 8.460831 AAATCAGTGAACAAACACACTAAAAC 57.539 30.769 0.00 0.00 44.07 2.43
2121 3071 6.561737 TCAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 44.07 2.83
2122 3072 7.151999 TCAGTGAACAAACACACTAAAACAT 57.848 32.000 0.00 0.00 44.07 2.71
2123 3073 7.026562 TCAGTGAACAAACACACTAAAACATG 58.973 34.615 0.00 0.00 44.07 3.21
2124 3074 6.806249 CAGTGAACAAACACACTAAAACATGT 59.194 34.615 0.00 0.00 44.07 3.21
2125 3075 7.008266 CAGTGAACAAACACACTAAAACATGTC 59.992 37.037 0.00 0.00 44.07 3.06
2126 3076 6.021782 GTGAACAAACACACTAAAACATGTCG 60.022 38.462 0.00 0.00 40.11 4.35
2127 3077 5.804692 ACAAACACACTAAAACATGTCGA 57.195 34.783 0.00 0.00 0.00 4.20
2128 3078 6.371809 ACAAACACACTAAAACATGTCGAT 57.628 33.333 0.00 0.00 0.00 3.59
2129 3079 7.485418 ACAAACACACTAAAACATGTCGATA 57.515 32.000 0.00 0.00 0.00 2.92
2130 3080 8.094798 ACAAACACACTAAAACATGTCGATAT 57.905 30.769 0.00 0.00 0.00 1.63
2131 3081 9.210329 ACAAACACACTAAAACATGTCGATATA 57.790 29.630 0.00 0.00 0.00 0.86
2132 3082 9.472995 CAAACACACTAAAACATGTCGATATAC 57.527 33.333 0.00 0.00 0.00 1.47
2133 3083 8.766000 AACACACTAAAACATGTCGATATACA 57.234 30.769 0.00 0.00 0.00 2.29
2134 3084 8.942338 ACACACTAAAACATGTCGATATACAT 57.058 30.769 0.00 0.00 40.75 2.29
2135 3085 9.378551 ACACACTAAAACATGTCGATATACATT 57.621 29.630 0.00 0.00 38.01 2.71
2136 3086 9.849607 CACACTAAAACATGTCGATATACATTC 57.150 33.333 0.00 0.00 38.01 2.67
2137 3087 9.817809 ACACTAAAACATGTCGATATACATTCT 57.182 29.630 0.00 0.00 38.01 2.40
2143 3093 9.684448 AAACATGTCGATATACATTCTACTCAG 57.316 33.333 0.00 0.00 38.01 3.35
2144 3094 8.622948 ACATGTCGATATACATTCTACTCAGA 57.377 34.615 0.00 0.00 38.01 3.27
2145 3095 9.067986 ACATGTCGATATACATTCTACTCAGAA 57.932 33.333 0.00 0.00 44.77 3.02
2146 3096 9.899226 CATGTCGATATACATTCTACTCAGAAA 57.101 33.333 0.00 0.00 43.89 2.52
2180 3130 8.525290 AACATCTTATATTTGTGAAAGGAGGG 57.475 34.615 0.00 0.00 0.00 4.30
2181 3131 7.872138 ACATCTTATATTTGTGAAAGGAGGGA 58.128 34.615 0.00 0.00 0.00 4.20
2182 3132 7.995488 ACATCTTATATTTGTGAAAGGAGGGAG 59.005 37.037 0.00 0.00 0.00 4.30
2183 3133 7.510675 TCTTATATTTGTGAAAGGAGGGAGT 57.489 36.000 0.00 0.00 0.00 3.85
2184 3134 8.618240 TCTTATATTTGTGAAAGGAGGGAGTA 57.382 34.615 0.00 0.00 0.00 2.59
2189 3139 4.061131 TGTGAAAGGAGGGAGTAGATGA 57.939 45.455 0.00 0.00 0.00 2.92
2198 3148 6.206042 AGGAGGGAGTAGATGAAAAGTACAT 58.794 40.000 0.00 0.00 0.00 2.29
2224 3175 3.181461 ACAGACCACCTTCTTCAGTTCAG 60.181 47.826 0.00 0.00 0.00 3.02
2249 3214 6.821388 ACTTCAGACAGATGAAAAGTACACT 58.179 36.000 0.00 0.00 38.66 3.55
2254 3219 6.815641 CAGACAGATGAAAAGTACACTAGCAT 59.184 38.462 0.00 0.00 0.00 3.79
2281 3272 4.324099 CCACCTTCTTCAGACAGATGGAAT 60.324 45.833 15.53 0.28 39.48 3.01
2287 3278 8.373981 CCTTCTTCAGACAGATGGAATATACAT 58.626 37.037 7.97 0.00 39.48 2.29
2288 3279 9.421806 CTTCTTCAGACAGATGGAATATACATC 57.578 37.037 10.74 10.74 43.87 3.06
2403 3404 9.847224 AGTATTTCTCAAGAGAGTTTTGGTAAA 57.153 29.630 0.00 0.00 42.66 2.01
2471 3475 3.229293 TGACCAATCAAAGATTGCACCA 58.771 40.909 12.93 8.00 0.00 4.17
2489 3493 5.304101 TGCACCATGAAATTTCAACCTAACT 59.696 36.000 23.91 3.73 41.13 2.24
2542 3546 6.424509 TCAATTGGATTTGAAGTTTGCATCAC 59.575 34.615 5.42 0.00 32.82 3.06
2551 3555 4.869297 TGAAGTTTGCATCACTTTGGTTTG 59.131 37.500 11.94 0.00 34.49 2.93
2568 3572 3.008049 GGTTTGGACTAGTGTCACCTCAT 59.992 47.826 0.00 0.00 44.61 2.90
2571 3575 3.357203 TGGACTAGTGTCACCTCATCTC 58.643 50.000 0.00 0.00 44.61 2.75
2573 3577 4.227527 TGGACTAGTGTCACCTCATCTCTA 59.772 45.833 0.00 0.00 44.61 2.43
2574 3578 4.819630 GGACTAGTGTCACCTCATCTCTAG 59.180 50.000 0.00 0.00 44.61 2.43
2575 3579 5.433526 GACTAGTGTCACCTCATCTCTAGT 58.566 45.833 0.00 0.00 42.48 2.57
2576 3580 5.822204 ACTAGTGTCACCTCATCTCTAGTT 58.178 41.667 0.00 0.00 36.05 2.24
2577 3581 5.650266 ACTAGTGTCACCTCATCTCTAGTTG 59.350 44.000 0.00 0.00 36.05 3.16
2578 3582 4.411927 AGTGTCACCTCATCTCTAGTTGT 58.588 43.478 0.00 0.00 0.00 3.32
2579 3583 5.571285 AGTGTCACCTCATCTCTAGTTGTA 58.429 41.667 0.00 0.00 0.00 2.41
2621 3625 7.476540 ACAAAAACTCCCAATAGAAATACCC 57.523 36.000 0.00 0.00 0.00 3.69
2622 3626 7.246027 ACAAAAACTCCCAATAGAAATACCCT 58.754 34.615 0.00 0.00 0.00 4.34
2623 3627 7.733047 ACAAAAACTCCCAATAGAAATACCCTT 59.267 33.333 0.00 0.00 0.00 3.95
2624 3628 9.250246 CAAAAACTCCCAATAGAAATACCCTTA 57.750 33.333 0.00 0.00 0.00 2.69
2628 3632 8.215954 ACTCCCAATAGAAATACCCTTATACC 57.784 38.462 0.00 0.00 0.00 2.73
2629 3633 7.239143 ACTCCCAATAGAAATACCCTTATACCC 59.761 40.741 0.00 0.00 0.00 3.69
2630 3634 7.090229 TCCCAATAGAAATACCCTTATACCCA 58.910 38.462 0.00 0.00 0.00 4.51
2631 3635 7.577030 TCCCAATAGAAATACCCTTATACCCAA 59.423 37.037 0.00 0.00 0.00 4.12
2632 3636 8.228905 CCCAATAGAAATACCCTTATACCCAAA 58.771 37.037 0.00 0.00 0.00 3.28
2633 3637 9.822727 CCAATAGAAATACCCTTATACCCAAAT 57.177 33.333 0.00 0.00 0.00 2.32
2641 3645 9.749340 AATACCCTTATACCCAAATAACATAGC 57.251 33.333 0.00 0.00 0.00 2.97
2642 3646 7.156694 ACCCTTATACCCAAATAACATAGCA 57.843 36.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 125 2.698855 TTCAGCTCAGGATTACAGGC 57.301 50.000 0.00 0.00 0.00 4.85
134 139 4.569564 GCCATCTTCATCCAAAAATTCAGC 59.430 41.667 0.00 0.00 0.00 4.26
186 191 1.755959 TGCACATGCTGAACCAAGTTT 59.244 42.857 5.31 0.00 42.66 2.66
187 192 1.401761 TGCACATGCTGAACCAAGTT 58.598 45.000 5.31 0.00 42.66 2.66
188 193 1.067516 GTTGCACATGCTGAACCAAGT 59.932 47.619 5.31 0.00 42.66 3.16
189 194 1.067364 TGTTGCACATGCTGAACCAAG 59.933 47.619 5.31 0.00 42.66 3.61
191 196 1.330234 ATGTTGCACATGCTGAACCA 58.670 45.000 5.31 0.00 37.45 3.67
192 197 2.288334 TGAATGTTGCACATGCTGAACC 60.288 45.455 5.31 0.00 37.97 3.62
194 199 2.624364 AGTGAATGTTGCACATGCTGAA 59.376 40.909 5.31 0.00 37.97 3.02
195 200 2.232399 AGTGAATGTTGCACATGCTGA 58.768 42.857 5.31 0.00 37.97 4.26
196 201 2.717580 AGTGAATGTTGCACATGCTG 57.282 45.000 5.31 0.00 37.97 4.41
197 202 3.068448 TCAAAGTGAATGTTGCACATGCT 59.932 39.130 5.31 3.57 37.97 3.79
198 203 3.182972 GTCAAAGTGAATGTTGCACATGC 59.817 43.478 0.00 0.00 37.97 4.06
199 204 3.737266 GGTCAAAGTGAATGTTGCACATG 59.263 43.478 0.00 0.00 37.97 3.21
200 205 3.384146 TGGTCAAAGTGAATGTTGCACAT 59.616 39.130 0.00 0.00 41.31 3.21
201 206 2.757314 TGGTCAAAGTGAATGTTGCACA 59.243 40.909 0.00 0.00 38.70 4.57
202 207 3.435105 TGGTCAAAGTGAATGTTGCAC 57.565 42.857 0.00 0.00 36.53 4.57
205 210 6.534436 TGTCAAATTGGTCAAAGTGAATGTTG 59.466 34.615 0.00 0.00 0.00 3.33
214 219 8.352201 TCAATTAGAGTGTCAAATTGGTCAAAG 58.648 33.333 7.52 0.00 39.79 2.77
216 221 7.815840 TCAATTAGAGTGTCAAATTGGTCAA 57.184 32.000 7.52 0.00 39.79 3.18
226 231 9.624697 GCAAATACAAATTCAATTAGAGTGTCA 57.375 29.630 0.00 0.00 0.00 3.58
227 232 9.076596 GGCAAATACAAATTCAATTAGAGTGTC 57.923 33.333 0.00 0.00 0.00 3.67
228 233 8.806146 AGGCAAATACAAATTCAATTAGAGTGT 58.194 29.630 0.00 0.00 0.00 3.55
229 234 9.294030 GAGGCAAATACAAATTCAATTAGAGTG 57.706 33.333 0.00 0.00 0.00 3.51
230 235 8.470002 GGAGGCAAATACAAATTCAATTAGAGT 58.530 33.333 0.00 0.00 0.00 3.24
231 236 8.689972 AGGAGGCAAATACAAATTCAATTAGAG 58.310 33.333 0.00 0.00 0.00 2.43
232 237 8.469200 CAGGAGGCAAATACAAATTCAATTAGA 58.531 33.333 0.00 0.00 0.00 2.10
233 238 8.253113 ACAGGAGGCAAATACAAATTCAATTAG 58.747 33.333 0.00 0.00 0.00 1.73
234 239 8.133024 ACAGGAGGCAAATACAAATTCAATTA 57.867 30.769 0.00 0.00 0.00 1.40
237 242 7.363705 CCATACAGGAGGCAAATACAAATTCAA 60.364 37.037 0.00 0.00 41.22 2.69
240 245 5.957774 ACCATACAGGAGGCAAATACAAATT 59.042 36.000 0.00 0.00 41.22 1.82
255 260 2.505982 CCGGAGGCACCATACAGG 59.494 66.667 0.00 0.00 46.14 4.00
267 272 4.701956 ACAAGAAAACATAATGCCGGAG 57.298 40.909 5.05 0.00 0.00 4.63
268 273 5.004448 TGTACAAGAAAACATAATGCCGGA 58.996 37.500 5.05 0.00 0.00 5.14
289 294 3.484407 ACTCAAAAGATGCAGCTTCTGT 58.516 40.909 19.00 11.23 33.43 3.41
313 318 1.601914 GGATGCGTGTTTTGGTTGTCC 60.602 52.381 0.00 0.00 0.00 4.02
327 332 0.667993 ACAAAGTTGTGGTGGATGCG 59.332 50.000 0.00 0.00 40.49 4.73
363 368 4.219115 TCCTAATCTGGTGTTTTTGGCAA 58.781 39.130 0.00 0.00 0.00 4.52
365 370 4.864704 TTCCTAATCTGGTGTTTTTGGC 57.135 40.909 0.00 0.00 0.00 4.52
429 434 8.611757 GGTTTTTGCTCATTGTTTACAAGATTT 58.388 29.630 1.50 0.00 39.47 2.17
432 437 5.746245 CGGTTTTTGCTCATTGTTTACAAGA 59.254 36.000 1.50 0.00 39.47 3.02
436 446 4.048504 AGCGGTTTTTGCTCATTGTTTAC 58.951 39.130 0.00 0.00 38.62 2.01
438 448 2.865551 CAGCGGTTTTTGCTCATTGTTT 59.134 40.909 0.00 0.00 41.72 2.83
439 449 2.100584 TCAGCGGTTTTTGCTCATTGTT 59.899 40.909 0.00 0.00 41.72 2.83
440 450 1.680735 TCAGCGGTTTTTGCTCATTGT 59.319 42.857 0.00 0.00 41.72 2.71
441 451 2.420628 TCAGCGGTTTTTGCTCATTG 57.579 45.000 0.00 0.00 41.72 2.82
442 452 3.005684 TGAATCAGCGGTTTTTGCTCATT 59.994 39.130 0.00 0.00 41.72 2.57
446 456 3.123050 GTTTGAATCAGCGGTTTTTGCT 58.877 40.909 0.00 0.00 45.31 3.91
448 458 4.566360 ACAAGTTTGAATCAGCGGTTTTTG 59.434 37.500 0.00 0.00 0.00 2.44
454 464 4.854399 TGTTTACAAGTTTGAATCAGCGG 58.146 39.130 0.00 0.00 0.00 5.52
455 465 6.614162 GCATTGTTTACAAGTTTGAATCAGCG 60.614 38.462 1.50 0.00 39.47 5.18
457 467 7.222417 TGTGCATTGTTTACAAGTTTGAATCAG 59.778 33.333 0.00 0.00 39.47 2.90
460 470 6.815641 TGTGTGCATTGTTTACAAGTTTGAAT 59.184 30.769 0.00 0.00 39.47 2.57
461 471 6.159293 TGTGTGCATTGTTTACAAGTTTGAA 58.841 32.000 0.00 0.00 39.47 2.69
462 472 5.714047 TGTGTGCATTGTTTACAAGTTTGA 58.286 33.333 0.00 0.00 39.47 2.69
463 473 5.576384 ACTGTGTGCATTGTTTACAAGTTTG 59.424 36.000 0.00 0.00 39.47 2.93
464 474 5.719173 ACTGTGTGCATTGTTTACAAGTTT 58.281 33.333 0.00 0.00 39.47 2.66
465 475 5.323371 ACTGTGTGCATTGTTTACAAGTT 57.677 34.783 0.00 0.00 39.47 2.66
466 476 4.981806 ACTGTGTGCATTGTTTACAAGT 57.018 36.364 0.00 0.00 39.47 3.16
467 477 4.503734 CCAACTGTGTGCATTGTTTACAAG 59.496 41.667 0.00 0.00 39.47 3.16
468 478 4.428209 CCAACTGTGTGCATTGTTTACAA 58.572 39.130 0.00 0.00 40.51 2.41
469 479 3.736433 GCCAACTGTGTGCATTGTTTACA 60.736 43.478 0.00 0.00 0.00 2.41
470 480 2.794350 GCCAACTGTGTGCATTGTTTAC 59.206 45.455 0.00 0.00 0.00 2.01
471 481 2.542618 CGCCAACTGTGTGCATTGTTTA 60.543 45.455 0.00 0.00 0.00 2.01
472 482 1.802136 CGCCAACTGTGTGCATTGTTT 60.802 47.619 0.00 0.00 0.00 2.83
473 483 0.248990 CGCCAACTGTGTGCATTGTT 60.249 50.000 0.00 0.00 0.00 2.83
474 484 1.100463 TCGCCAACTGTGTGCATTGT 61.100 50.000 0.00 0.00 0.00 2.71
475 485 0.030504 TTCGCCAACTGTGTGCATTG 59.969 50.000 0.00 0.00 0.00 2.82
476 486 0.311790 CTTCGCCAACTGTGTGCATT 59.688 50.000 0.00 0.00 0.00 3.56
477 487 0.534877 TCTTCGCCAACTGTGTGCAT 60.535 50.000 0.00 0.00 0.00 3.96
478 488 1.153269 TCTTCGCCAACTGTGTGCA 60.153 52.632 3.23 0.00 0.00 4.57
479 489 1.571460 CTCTTCGCCAACTGTGTGC 59.429 57.895 0.00 0.00 0.00 4.57
480 490 0.882042 AGCTCTTCGCCAACTGTGTG 60.882 55.000 0.00 0.00 40.39 3.82
481 491 0.179045 AAGCTCTTCGCCAACTGTGT 60.179 50.000 0.00 0.00 40.39 3.72
482 492 0.236711 CAAGCTCTTCGCCAACTGTG 59.763 55.000 0.00 0.00 40.39 3.66
483 493 0.106708 TCAAGCTCTTCGCCAACTGT 59.893 50.000 0.00 0.00 40.39 3.55
484 494 0.795085 CTCAAGCTCTTCGCCAACTG 59.205 55.000 0.00 0.00 40.39 3.16
485 495 0.952984 GCTCAAGCTCTTCGCCAACT 60.953 55.000 0.00 0.00 40.39 3.16
486 496 1.230635 TGCTCAAGCTCTTCGCCAAC 61.231 55.000 3.32 0.00 42.66 3.77
487 497 1.071299 TGCTCAAGCTCTTCGCCAA 59.929 52.632 3.32 0.00 42.66 4.52
488 498 1.669115 GTGCTCAAGCTCTTCGCCA 60.669 57.895 3.32 0.00 42.66 5.69
489 499 1.375268 AGTGCTCAAGCTCTTCGCC 60.375 57.895 3.32 0.00 41.50 5.54
490 500 4.275524 AGTGCTCAAGCTCTTCGC 57.724 55.556 3.32 0.00 41.50 4.70
494 504 3.864160 GCAAGTAGAAGTGCTCAAGCTCT 60.864 47.826 3.32 2.04 45.55 4.09
495 505 2.414825 GCAAGTAGAAGTGCTCAAGCTC 59.585 50.000 3.32 0.00 42.66 4.09
496 506 2.224378 TGCAAGTAGAAGTGCTCAAGCT 60.224 45.455 3.32 0.00 41.48 3.74
497 507 2.146342 TGCAAGTAGAAGTGCTCAAGC 58.854 47.619 0.00 0.00 41.48 4.01
498 508 4.060900 TCTTGCAAGTAGAAGTGCTCAAG 58.939 43.478 25.19 0.00 41.48 3.02
499 509 4.071961 TCTTGCAAGTAGAAGTGCTCAA 57.928 40.909 25.19 0.00 41.48 3.02
500 510 3.751479 TCTTGCAAGTAGAAGTGCTCA 57.249 42.857 25.19 0.00 41.48 4.26
501 511 3.120373 GCTTCTTGCAAGTAGAAGTGCTC 60.120 47.826 30.50 11.73 46.59 4.26
502 512 2.810852 GCTTCTTGCAAGTAGAAGTGCT 59.189 45.455 30.50 0.00 46.59 4.40
503 513 2.810852 AGCTTCTTGCAAGTAGAAGTGC 59.189 45.455 30.50 18.37 46.59 4.40
504 514 6.366630 GTTAAGCTTCTTGCAAGTAGAAGTG 58.633 40.000 30.50 10.36 46.59 3.16
505 515 5.470437 GGTTAAGCTTCTTGCAAGTAGAAGT 59.530 40.000 30.50 18.43 46.59 3.01
507 517 5.621193 AGGTTAAGCTTCTTGCAAGTAGAA 58.379 37.500 30.50 16.44 45.94 2.10
508 518 5.228945 AGGTTAAGCTTCTTGCAAGTAGA 57.771 39.130 30.50 15.85 45.94 2.59
509 519 5.932303 TGTAGGTTAAGCTTCTTGCAAGTAG 59.068 40.000 24.29 24.29 45.94 2.57
510 520 5.860611 TGTAGGTTAAGCTTCTTGCAAGTA 58.139 37.500 25.19 15.69 45.94 2.24
511 521 4.714632 TGTAGGTTAAGCTTCTTGCAAGT 58.285 39.130 25.19 8.96 45.94 3.16
512 522 5.689383 TTGTAGGTTAAGCTTCTTGCAAG 57.311 39.130 20.81 20.81 45.94 4.01
513 523 6.040391 ACAATTGTAGGTTAAGCTTCTTGCAA 59.960 34.615 13.21 2.58 45.94 4.08
514 524 5.534654 ACAATTGTAGGTTAAGCTTCTTGCA 59.465 36.000 13.21 0.00 45.94 4.08
515 525 6.013842 ACAATTGTAGGTTAAGCTTCTTGC 57.986 37.500 13.21 0.00 43.29 4.01
526 536 8.564509 TTTAGGCGTATAAACAATTGTAGGTT 57.435 30.769 12.39 5.36 0.00 3.50
529 539 9.828852 TTGTTTTAGGCGTATAAACAATTGTAG 57.171 29.630 21.81 1.11 43.13 2.74
535 545 9.828852 CTACATTTGTTTTAGGCGTATAAACAA 57.171 29.630 21.81 21.81 45.05 2.83
540 550 7.041644 GCATCCTACATTTGTTTTAGGCGTATA 60.042 37.037 0.00 0.00 0.00 1.47
541 551 6.238648 GCATCCTACATTTGTTTTAGGCGTAT 60.239 38.462 0.00 0.00 0.00 3.06
542 552 5.065474 GCATCCTACATTTGTTTTAGGCGTA 59.935 40.000 0.00 0.00 0.00 4.42
543 553 4.142469 GCATCCTACATTTGTTTTAGGCGT 60.142 41.667 0.00 0.00 0.00 5.68
544 554 4.096382 AGCATCCTACATTTGTTTTAGGCG 59.904 41.667 0.00 0.00 0.00 5.52
545 555 5.125417 TGAGCATCCTACATTTGTTTTAGGC 59.875 40.000 0.00 0.00 0.00 3.93
546 556 6.757897 TGAGCATCCTACATTTGTTTTAGG 57.242 37.500 0.00 0.00 0.00 2.69
550 560 4.708421 AGCATGAGCATCCTACATTTGTTT 59.292 37.500 0.00 0.00 45.49 2.83
567 577 5.713389 ACTGATTCTCCATTTGAAAGCATGA 59.287 36.000 0.00 0.00 0.00 3.07
591 603 4.018506 TGCCTCCAAGATTTAGTTCATGGA 60.019 41.667 0.00 0.00 40.27 3.41
609 621 1.135721 GATTTTGGTCCTGCATGCCTC 59.864 52.381 16.68 2.63 0.00 4.70
671 689 3.126514 CAGAGTTACAGAATGCAGCAAGG 59.873 47.826 0.00 0.00 42.53 3.61
672 690 3.425892 GCAGAGTTACAGAATGCAGCAAG 60.426 47.826 0.00 0.00 42.53 4.01
688 706 3.857157 TTGTTAGTTGGGAAGCAGAGT 57.143 42.857 0.00 0.00 0.00 3.24
689 707 3.441572 CCATTGTTAGTTGGGAAGCAGAG 59.558 47.826 0.00 0.00 0.00 3.35
692 710 3.237268 ACCATTGTTAGTTGGGAAGCA 57.763 42.857 0.00 0.00 37.32 3.91
694 712 7.891561 TGAATTAACCATTGTTAGTTGGGAAG 58.108 34.615 2.67 0.00 37.11 3.46
695 713 7.507616 ACTGAATTAACCATTGTTAGTTGGGAA 59.492 33.333 2.67 0.00 37.11 3.97
696 714 7.007723 ACTGAATTAACCATTGTTAGTTGGGA 58.992 34.615 2.67 0.00 37.11 4.37
697 715 7.227049 ACTGAATTAACCATTGTTAGTTGGG 57.773 36.000 2.67 0.00 37.11 4.12
709 727 9.753674 AGATGGAAATCTAAACTGAATTAACCA 57.246 29.630 0.00 0.00 0.00 3.67
716 734 9.658799 CTCAACTAGATGGAAATCTAAACTGAA 57.341 33.333 0.00 0.00 33.22 3.02
717 735 9.035890 TCTCAACTAGATGGAAATCTAAACTGA 57.964 33.333 0.00 1.04 33.22 3.41
718 736 9.658799 TTCTCAACTAGATGGAAATCTAAACTG 57.341 33.333 0.00 0.00 33.22 3.16
725 743 9.947669 CATGAATTTCTCAACTAGATGGAAATC 57.052 33.333 19.77 15.73 37.67 2.17
726 744 9.471702 ACATGAATTTCTCAACTAGATGGAAAT 57.528 29.630 16.56 16.56 37.67 2.17
729 747 7.554118 GGAACATGAATTTCTCAACTAGATGGA 59.446 37.037 0.00 0.00 37.67 3.41
730 748 7.337689 TGGAACATGAATTTCTCAACTAGATGG 59.662 37.037 0.00 0.00 37.67 3.51
731 749 8.180267 GTGGAACATGAATTTCTCAACTAGATG 58.820 37.037 0.00 0.00 44.52 2.90
732 750 7.337942 GGTGGAACATGAATTTCTCAACTAGAT 59.662 37.037 0.00 0.00 44.52 1.98
733 751 6.655003 GGTGGAACATGAATTTCTCAACTAGA 59.345 38.462 0.00 0.00 44.52 2.43
734 752 6.656693 AGGTGGAACATGAATTTCTCAACTAG 59.343 38.462 0.00 0.00 44.52 2.57
735 753 6.542821 AGGTGGAACATGAATTTCTCAACTA 58.457 36.000 0.00 0.00 44.52 2.24
736 754 5.388654 AGGTGGAACATGAATTTCTCAACT 58.611 37.500 0.00 0.00 44.52 3.16
737 755 5.712152 AGGTGGAACATGAATTTCTCAAC 57.288 39.130 0.00 0.00 44.52 3.18
738 756 5.832595 TGAAGGTGGAACATGAATTTCTCAA 59.167 36.000 0.00 0.00 44.52 3.02
739 757 5.384336 TGAAGGTGGAACATGAATTTCTCA 58.616 37.500 0.00 0.00 44.52 3.27
740 758 5.105997 CCTGAAGGTGGAACATGAATTTCTC 60.106 44.000 0.00 0.00 44.52 2.87
741 759 4.768968 CCTGAAGGTGGAACATGAATTTCT 59.231 41.667 0.00 0.00 44.52 2.52
817 906 5.612688 AGGCAGGATAATAAAAGGAGATGGA 59.387 40.000 0.00 0.00 0.00 3.41
880 1707 8.472007 TGTTCAGAGGTTGTATTTTTACCAAT 57.528 30.769 0.00 0.00 34.32 3.16
1336 2196 3.916761 TGCACCATGAAAATCTTTGAGC 58.083 40.909 0.00 0.00 0.00 4.26
1345 2205 3.009363 TGATCTCCTCTGCACCATGAAAA 59.991 43.478 0.00 0.00 0.00 2.29
1369 2289 2.777972 CGTCCCCGACTCGCCATTA 61.778 63.158 0.00 0.00 35.63 1.90
1768 2695 3.857157 AAAGAGGTGTTTGTCCTAGCA 57.143 42.857 0.00 0.00 35.20 3.49
1856 2802 4.644103 TTAACTGCGTGGTATCTCTACC 57.356 45.455 0.00 0.00 46.65 3.18
1857 2803 4.982916 CCATTAACTGCGTGGTATCTCTAC 59.017 45.833 0.00 0.00 0.00 2.59
1858 2804 4.891168 TCCATTAACTGCGTGGTATCTCTA 59.109 41.667 0.00 0.00 34.61 2.43
1944 2892 5.329035 ACACTGCAACTGAAACAAGAAAT 57.671 34.783 0.00 0.00 0.00 2.17
1975 2923 5.151454 ACCCCAAACTGAATCAATTAACCA 58.849 37.500 0.00 0.00 0.00 3.67
1976 2924 5.738619 ACCCCAAACTGAATCAATTAACC 57.261 39.130 0.00 0.00 0.00 2.85
1981 2929 5.011023 GTCTTCAACCCCAAACTGAATCAAT 59.989 40.000 0.00 0.00 0.00 2.57
1997 2947 5.234543 GTGAAACCTGTACTCTGTCTTCAAC 59.765 44.000 0.00 0.00 0.00 3.18
2034 2984 2.918712 ATATTTGTGAGCGGAGGGAG 57.081 50.000 0.00 0.00 0.00 4.30
2035 2985 3.964688 TCTTATATTTGTGAGCGGAGGGA 59.035 43.478 0.00 0.00 0.00 4.20
2036 2986 4.336889 TCTTATATTTGTGAGCGGAGGG 57.663 45.455 0.00 0.00 0.00 4.30
2037 2987 5.300752 ACATCTTATATTTGTGAGCGGAGG 58.699 41.667 0.00 0.00 0.00 4.30
2038 2988 6.851222 AACATCTTATATTTGTGAGCGGAG 57.149 37.500 0.00 0.00 0.00 4.63
2039 2989 7.335673 TCAAAACATCTTATATTTGTGAGCGGA 59.664 33.333 0.00 0.00 35.01 5.54
2040 2990 7.471721 TCAAAACATCTTATATTTGTGAGCGG 58.528 34.615 0.00 0.00 35.01 5.52
2041 2991 8.894409 TTCAAAACATCTTATATTTGTGAGCG 57.106 30.769 0.00 0.00 35.01 5.03
2093 3043 5.895636 AGTGTGTTTGTTCACTGATTTCA 57.104 34.783 0.00 0.00 42.30 2.69
2094 3044 8.583765 GTTTTAGTGTGTTTGTTCACTGATTTC 58.416 33.333 7.88 0.00 43.46 2.17
2095 3045 8.085296 TGTTTTAGTGTGTTTGTTCACTGATTT 58.915 29.630 7.88 0.00 43.46 2.17
2096 3046 7.598278 TGTTTTAGTGTGTTTGTTCACTGATT 58.402 30.769 7.88 0.00 43.46 2.57
2097 3047 7.151999 TGTTTTAGTGTGTTTGTTCACTGAT 57.848 32.000 7.88 0.00 43.46 2.90
2098 3048 6.561737 TGTTTTAGTGTGTTTGTTCACTGA 57.438 33.333 7.88 0.00 43.46 3.41
2099 3049 6.806249 ACATGTTTTAGTGTGTTTGTTCACTG 59.194 34.615 7.88 0.00 43.46 3.66
2100 3050 6.919721 ACATGTTTTAGTGTGTTTGTTCACT 58.080 32.000 0.00 0.00 45.21 3.41
2101 3051 6.021782 CGACATGTTTTAGTGTGTTTGTTCAC 60.022 38.462 0.00 0.00 38.63 3.18
2102 3052 6.024664 CGACATGTTTTAGTGTGTTTGTTCA 58.975 36.000 0.00 0.00 0.00 3.18
2103 3053 6.252281 TCGACATGTTTTAGTGTGTTTGTTC 58.748 36.000 0.00 0.00 0.00 3.18
2104 3054 6.184580 TCGACATGTTTTAGTGTGTTTGTT 57.815 33.333 0.00 0.00 0.00 2.83
2105 3055 5.804692 TCGACATGTTTTAGTGTGTTTGT 57.195 34.783 0.00 0.00 0.00 2.83
2106 3056 9.472995 GTATATCGACATGTTTTAGTGTGTTTG 57.527 33.333 0.00 0.00 0.00 2.93
2107 3057 9.210329 TGTATATCGACATGTTTTAGTGTGTTT 57.790 29.630 0.00 0.00 0.00 2.83
2108 3058 8.766000 TGTATATCGACATGTTTTAGTGTGTT 57.234 30.769 0.00 0.00 0.00 3.32
2109 3059 8.942338 ATGTATATCGACATGTTTTAGTGTGT 57.058 30.769 0.00 0.00 38.64 3.72
2110 3060 9.849607 GAATGTATATCGACATGTTTTAGTGTG 57.150 33.333 0.00 0.00 39.99 3.82
2111 3061 9.817809 AGAATGTATATCGACATGTTTTAGTGT 57.182 29.630 0.00 0.00 39.99 3.55
2117 3067 9.684448 CTGAGTAGAATGTATATCGACATGTTT 57.316 33.333 0.00 0.00 39.99 2.83
2118 3068 9.067986 TCTGAGTAGAATGTATATCGACATGTT 57.932 33.333 0.00 0.00 39.99 2.71
2119 3069 8.622948 TCTGAGTAGAATGTATATCGACATGT 57.377 34.615 0.00 0.00 39.99 3.21
2120 3070 9.899226 TTTCTGAGTAGAATGTATATCGACATG 57.101 33.333 0.00 0.00 42.25 3.21
2154 3104 8.971073 CCCTCCTTTCACAAATATAAGATGTTT 58.029 33.333 0.00 0.00 0.00 2.83
2155 3105 8.336235 TCCCTCCTTTCACAAATATAAGATGTT 58.664 33.333 0.00 0.00 0.00 2.71
2156 3106 7.872138 TCCCTCCTTTCACAAATATAAGATGT 58.128 34.615 0.00 0.00 0.00 3.06
2157 3107 7.995488 ACTCCCTCCTTTCACAAATATAAGATG 59.005 37.037 0.00 0.00 0.00 2.90
2158 3108 8.107196 ACTCCCTCCTTTCACAAATATAAGAT 57.893 34.615 0.00 0.00 0.00 2.40
2159 3109 7.510675 ACTCCCTCCTTTCACAAATATAAGA 57.489 36.000 0.00 0.00 0.00 2.10
2160 3110 8.705594 TCTACTCCCTCCTTTCACAAATATAAG 58.294 37.037 0.00 0.00 0.00 1.73
2161 3111 8.618240 TCTACTCCCTCCTTTCACAAATATAA 57.382 34.615 0.00 0.00 0.00 0.98
2162 3112 8.651389 CATCTACTCCCTCCTTTCACAAATATA 58.349 37.037 0.00 0.00 0.00 0.86
2163 3113 7.348274 TCATCTACTCCCTCCTTTCACAAATAT 59.652 37.037 0.00 0.00 0.00 1.28
2164 3114 6.672218 TCATCTACTCCCTCCTTTCACAAATA 59.328 38.462 0.00 0.00 0.00 1.40
2165 3115 5.488919 TCATCTACTCCCTCCTTTCACAAAT 59.511 40.000 0.00 0.00 0.00 2.32
2166 3116 4.844085 TCATCTACTCCCTCCTTTCACAAA 59.156 41.667 0.00 0.00 0.00 2.83
2167 3117 4.425772 TCATCTACTCCCTCCTTTCACAA 58.574 43.478 0.00 0.00 0.00 3.33
2168 3118 4.061131 TCATCTACTCCCTCCTTTCACA 57.939 45.455 0.00 0.00 0.00 3.58
2169 3119 5.422214 TTTCATCTACTCCCTCCTTTCAC 57.578 43.478 0.00 0.00 0.00 3.18
2170 3120 5.548056 ACTTTTCATCTACTCCCTCCTTTCA 59.452 40.000 0.00 0.00 0.00 2.69
2171 3121 6.056090 ACTTTTCATCTACTCCCTCCTTTC 57.944 41.667 0.00 0.00 0.00 2.62
2172 3122 6.500751 TGTACTTTTCATCTACTCCCTCCTTT 59.499 38.462 0.00 0.00 0.00 3.11
2173 3123 6.023603 TGTACTTTTCATCTACTCCCTCCTT 58.976 40.000 0.00 0.00 0.00 3.36
2174 3124 5.590818 TGTACTTTTCATCTACTCCCTCCT 58.409 41.667 0.00 0.00 0.00 3.69
2175 3125 5.934402 TGTACTTTTCATCTACTCCCTCC 57.066 43.478 0.00 0.00 0.00 4.30
2176 3126 7.113658 TCATGTACTTTTCATCTACTCCCTC 57.886 40.000 0.00 0.00 0.00 4.30
2177 3127 7.682787 ATCATGTACTTTTCATCTACTCCCT 57.317 36.000 0.00 0.00 0.00 4.20
2178 3128 8.421784 TGTATCATGTACTTTTCATCTACTCCC 58.578 37.037 0.00 0.00 0.00 4.30
2179 3129 9.469807 CTGTATCATGTACTTTTCATCTACTCC 57.530 37.037 0.00 0.00 0.00 3.85
2182 3132 9.250624 GGTCTGTATCATGTACTTTTCATCTAC 57.749 37.037 0.00 0.00 0.00 2.59
2183 3133 8.977412 TGGTCTGTATCATGTACTTTTCATCTA 58.023 33.333 0.00 0.00 0.00 1.98
2184 3134 7.766278 GTGGTCTGTATCATGTACTTTTCATCT 59.234 37.037 0.00 0.00 0.00 2.90
2189 3139 6.374417 AGGTGGTCTGTATCATGTACTTTT 57.626 37.500 0.00 0.00 0.00 2.27
2198 3148 4.160329 ACTGAAGAAGGTGGTCTGTATCA 58.840 43.478 0.00 0.00 0.00 2.15
2224 3175 6.926272 AGTGTACTTTTCATCTGTCTGAAGTC 59.074 38.462 0.00 0.00 36.55 3.01
2249 3214 4.402793 GTCTGAAGAAGGTGGTCTATGCTA 59.597 45.833 0.00 0.00 0.00 3.49
2254 3219 4.114015 TCTGTCTGAAGAAGGTGGTCTA 57.886 45.455 0.00 0.00 0.00 2.59
2353 3354 3.306364 CCAAACTACAGTGACCCTGAGAG 60.306 52.174 0.00 0.00 44.49 3.20
2354 3355 2.632996 CCAAACTACAGTGACCCTGAGA 59.367 50.000 0.00 0.00 44.49 3.27
2365 3366 7.386851 TCTTGAGAAATACTCCCAAACTACAG 58.613 38.462 0.00 0.00 44.34 2.74
2507 3511 7.596248 ACTTCAAATCCAATTGACAATTCTTCG 59.404 33.333 10.52 0.19 38.95 3.79
2514 3518 6.111382 TGCAAACTTCAAATCCAATTGACAA 58.889 32.000 7.12 0.00 38.95 3.18
2518 3522 6.425721 AGTGATGCAAACTTCAAATCCAATTG 59.574 34.615 0.00 0.00 32.30 2.32
2521 3525 5.534207 AGTGATGCAAACTTCAAATCCAA 57.466 34.783 0.00 0.00 32.30 3.53
2522 3526 5.534207 AAGTGATGCAAACTTCAAATCCA 57.466 34.783 11.33 0.00 32.36 3.41
2542 3546 3.564225 GGTGACACTAGTCCAAACCAAAG 59.436 47.826 5.39 0.00 44.33 2.77
2551 3555 3.626930 AGAGATGAGGTGACACTAGTCC 58.373 50.000 5.39 0.00 44.33 3.85
2595 3599 9.197306 GGGTATTTCTATTGGGAGTTTTTGTAT 57.803 33.333 0.00 0.00 0.00 2.29
2615 3619 9.749340 GCTATGTTATTTGGGTATAAGGGTATT 57.251 33.333 0.00 0.00 0.00 1.89
2616 3620 8.896658 TGCTATGTTATTTGGGTATAAGGGTAT 58.103 33.333 0.00 0.00 0.00 2.73
2617 3621 8.277720 TGCTATGTTATTTGGGTATAAGGGTA 57.722 34.615 0.00 0.00 0.00 3.69
2618 3622 7.156694 TGCTATGTTATTTGGGTATAAGGGT 57.843 36.000 0.00 0.00 0.00 4.34
2619 3623 7.669722 ACATGCTATGTTATTTGGGTATAAGGG 59.330 37.037 0.00 0.00 41.63 3.95
2620 3624 8.514594 CACATGCTATGTTATTTGGGTATAAGG 58.485 37.037 0.00 0.00 42.70 2.69
2621 3625 9.066892 ACACATGCTATGTTATTTGGGTATAAG 57.933 33.333 0.00 0.00 42.70 1.73
2622 3626 8.988546 ACACATGCTATGTTATTTGGGTATAA 57.011 30.769 0.00 0.00 42.70 0.98
2623 3627 8.436778 AGACACATGCTATGTTATTTGGGTATA 58.563 33.333 0.00 0.00 42.70 1.47
2624 3628 7.290061 AGACACATGCTATGTTATTTGGGTAT 58.710 34.615 0.00 0.00 42.70 2.73
2625 3629 6.658849 AGACACATGCTATGTTATTTGGGTA 58.341 36.000 0.00 0.00 42.70 3.69
2626 3630 5.509498 AGACACATGCTATGTTATTTGGGT 58.491 37.500 0.00 0.00 42.70 4.51
2627 3631 6.127647 ACAAGACACATGCTATGTTATTTGGG 60.128 38.462 0.00 0.00 42.70 4.12
2628 3632 6.855836 ACAAGACACATGCTATGTTATTTGG 58.144 36.000 0.00 3.21 42.70 3.28
2629 3633 7.201376 GCAACAAGACACATGCTATGTTATTTG 60.201 37.037 0.00 0.40 42.70 2.32
2630 3634 6.808212 GCAACAAGACACATGCTATGTTATTT 59.192 34.615 0.00 0.00 42.70 1.40
2631 3635 6.151648 AGCAACAAGACACATGCTATGTTATT 59.848 34.615 0.00 0.00 46.61 1.40
2632 3636 5.649395 AGCAACAAGACACATGCTATGTTAT 59.351 36.000 0.00 0.00 46.61 1.89
2633 3637 5.003160 AGCAACAAGACACATGCTATGTTA 58.997 37.500 0.00 0.00 46.61 2.41
2634 3638 3.822735 AGCAACAAGACACATGCTATGTT 59.177 39.130 0.00 0.00 46.61 2.71
2635 3639 3.415212 AGCAACAAGACACATGCTATGT 58.585 40.909 0.00 0.00 46.61 2.29
2640 3644 1.523934 GCAAAGCAACAAGACACATGC 59.476 47.619 0.00 0.00 39.06 4.06
2641 3645 2.792674 CAGCAAAGCAACAAGACACATG 59.207 45.455 0.00 0.00 0.00 3.21
2642 3646 2.428171 ACAGCAAAGCAACAAGACACAT 59.572 40.909 0.00 0.00 0.00 3.21
2711 3715 7.046891 TGGAGTTATTTGGGTAAAGGGTAAT 57.953 36.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.