Multiple sequence alignment - TraesCS5A01G461400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G461400 chr5A 100.000 5133 0 0 1 5133 641727766 641732898 0.000000e+00 9479.0
1 TraesCS5A01G461400 chr5A 83.763 659 74 20 3867 4506 641684664 641684020 1.230000e-165 593.0
2 TraesCS5A01G461400 chr5A 87.438 406 35 10 3868 4262 641682780 641682380 2.180000e-123 453.0
3 TraesCS5A01G461400 chr5A 88.079 151 14 4 4929 5079 641683210 641683064 5.280000e-40 176.0
4 TraesCS5A01G461400 chr5B 91.473 2791 143 27 1956 4692 644886447 644889196 0.000000e+00 3747.0
5 TraesCS5A01G461400 chr5B 88.420 1304 71 25 662 1950 644885158 644886396 0.000000e+00 1498.0
6 TraesCS5A01G461400 chr5B 76.794 655 77 40 4105 4695 644865850 644865207 1.080000e-76 298.0
7 TraesCS5A01G461400 chr5B 83.721 86 12 2 4771 4856 644864976 644864893 4.260000e-11 80.5
8 TraesCS5A01G461400 chr5D 89.864 1697 82 32 3041 4681 513975144 513976806 0.000000e+00 2098.0
9 TraesCS5A01G461400 chr5D 87.430 1774 121 36 483 2238 513972624 513974313 0.000000e+00 1947.0
10 TraesCS5A01G461400 chr5D 97.074 752 19 1 2290 3041 513974316 513975064 0.000000e+00 1264.0
11 TraesCS5A01G461400 chr5D 77.872 470 57 24 4240 4678 513908205 513907752 1.100000e-61 248.0
12 TraesCS5A01G461400 chr5D 88.557 201 21 1 4929 5129 513907168 513906970 5.130000e-60 243.0
13 TraesCS5A01G461400 chr5D 88.462 78 9 0 4779 4856 513907548 513907471 1.520000e-15 95.3
14 TraesCS5A01G461400 chr5D 95.918 49 2 0 4240 4288 513977143 513977191 4.260000e-11 80.5
15 TraesCS5A01G461400 chrUn 100.000 389 0 0 2362 2750 480189589 480189201 0.000000e+00 719.0
16 TraesCS5A01G461400 chr2B 78.368 809 156 13 3285 4082 476400022 476400822 1.650000e-139 507.0
17 TraesCS5A01G461400 chr2D 78.545 797 147 16 3303 4082 402307534 402306745 2.130000e-138 503.0
18 TraesCS5A01G461400 chr2A 77.874 809 163 11 3284 4082 539394318 539393516 5.970000e-134 488.0
19 TraesCS5A01G461400 chr1A 77.379 809 156 20 3284 4082 303854569 303853778 6.060000e-124 455.0
20 TraesCS5A01G461400 chr1A 81.215 181 32 2 484 664 548667752 548667574 1.490000e-30 145.0
21 TraesCS5A01G461400 chr1D 77.452 785 150 19 3303 4077 239806955 239806188 1.310000e-120 444.0
22 TraesCS5A01G461400 chr1D 84.431 167 24 2 483 648 396946486 396946321 4.110000e-36 163.0
23 TraesCS5A01G461400 chr1D 83.133 166 28 0 483 648 396886171 396886006 8.900000e-33 152.0
24 TraesCS5A01G461400 chr7A 82.249 169 30 0 480 648 139154423 139154591 4.140000e-31 147.0
25 TraesCS5A01G461400 chr6B 80.526 190 29 8 479 664 482469588 482469403 6.930000e-29 139.0
26 TraesCS5A01G461400 chr3D 83.766 154 16 6 4277 4424 39419102 39419252 2.490000e-28 137.0
27 TraesCS5A01G461400 chr3D 82.581 155 26 1 479 633 584704302 584704455 8.960000e-28 135.0
28 TraesCS5A01G461400 chr3B 81.395 172 28 4 479 648 6090156 6089987 2.490000e-28 137.0
29 TraesCS5A01G461400 chr3A 79.032 186 35 4 479 663 574865258 574865076 1.940000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G461400 chr5A 641727766 641732898 5132 False 9479.000000 9479 100.000000 1 5133 1 chr5A.!!$F1 5132
1 TraesCS5A01G461400 chr5A 641682380 641684664 2284 True 407.333333 593 86.426667 3867 5079 3 chr5A.!!$R1 1212
2 TraesCS5A01G461400 chr5B 644885158 644889196 4038 False 2622.500000 3747 89.946500 662 4692 2 chr5B.!!$F1 4030
3 TraesCS5A01G461400 chr5D 513972624 513977191 4567 False 1347.375000 2098 92.571500 483 4681 4 chr5D.!!$F1 4198
4 TraesCS5A01G461400 chr2B 476400022 476400822 800 False 507.000000 507 78.368000 3285 4082 1 chr2B.!!$F1 797
5 TraesCS5A01G461400 chr2D 402306745 402307534 789 True 503.000000 503 78.545000 3303 4082 1 chr2D.!!$R1 779
6 TraesCS5A01G461400 chr2A 539393516 539394318 802 True 488.000000 488 77.874000 3284 4082 1 chr2A.!!$R1 798
7 TraesCS5A01G461400 chr1A 303853778 303854569 791 True 455.000000 455 77.379000 3284 4082 1 chr1A.!!$R1 798
8 TraesCS5A01G461400 chr1D 239806188 239806955 767 True 444.000000 444 77.452000 3303 4077 1 chr1D.!!$R1 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 468 0.098025 CGACTTCTCTCGACAGCTCC 59.902 60.0 0.00 0.0 35.58 4.70 F
555 556 0.243907 CGACTCGTTCTGGTGGTGAT 59.756 55.0 0.00 0.0 0.00 3.06 F
1134 1154 0.305922 GCTCTATGCGTGAATGGTGC 59.694 55.0 0.00 0.0 0.00 5.01 F
1435 1465 0.034896 CTTAGCCGTGTGGTCTGGTT 59.965 55.0 0.00 0.0 37.67 3.67 F
1436 1466 0.250124 TTAGCCGTGTGGTCTGGTTG 60.250 55.0 0.00 0.0 37.67 3.77 F
1663 1694 0.331616 ACCCCTTCCCTTTTCGGATG 59.668 55.0 0.00 0.0 33.16 3.51 F
1722 1756 0.542232 ACGGCAGACTCTTGGTACCT 60.542 55.0 14.36 0.0 0.00 3.08 F
3649 3877 0.179081 GACACTACCCGGATTCAGGC 60.179 60.0 0.73 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1434 0.107848 CGGCTAAGGTCAACGGGATT 60.108 55.000 0.00 0.00 0.00 3.01 R
1410 1440 0.250166 ACCACACGGCTAAGGTCAAC 60.250 55.000 0.00 0.00 34.57 3.18 R
2126 2208 0.473755 AGGGTGTCTCACATGTGCAA 59.526 50.000 21.38 8.39 35.86 4.08 R
3053 3218 0.607217 TGCCAGCACTTGATCACCAG 60.607 55.000 0.00 0.00 0.00 4.00 R
3265 3469 2.713877 ACACTGTTACCAACCAAACGT 58.286 42.857 0.00 0.00 0.00 3.99 R
3592 3820 5.048083 TGCAATTACTCCACCAAGAAATGAC 60.048 40.000 0.00 0.00 0.00 3.06 R
4021 4249 2.023673 CAGCACAGACCAAAAGGAACA 58.976 47.619 0.00 0.00 0.00 3.18 R
4815 5279 0.106708 TCAAGCTCTTCGCCAACTGT 59.893 50.000 0.00 0.00 40.39 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 7.664082 TGAAATTGTTCAAAGTTCAAAGCAA 57.336 28.000 10.47 0.00 40.87 3.91
94 95 8.092521 TGAAATTGTTCAAAGTTCAAAGCAAA 57.907 26.923 10.47 0.00 40.87 3.68
95 96 8.562892 TGAAATTGTTCAAAGTTCAAAGCAAAA 58.437 25.926 10.47 0.00 40.87 2.44
96 97 9.558648 GAAATTGTTCAAAGTTCAAAGCAAAAT 57.441 25.926 0.00 0.00 33.61 1.82
101 102 9.376075 TGTTCAAAGTTCAAAGCAAAATATTCA 57.624 25.926 0.00 0.00 0.00 2.57
104 105 9.545105 TCAAAGTTCAAAGCAAAATATTCATGT 57.455 25.926 0.00 0.00 0.00 3.21
125 126 9.542462 TCATGTAGTATATTTAAGTGTTCAGGC 57.458 33.333 0.00 0.00 0.00 4.85
126 127 9.547753 CATGTAGTATATTTAAGTGTTCAGGCT 57.452 33.333 0.00 0.00 0.00 4.58
128 129 9.953565 TGTAGTATATTTAAGTGTTCAGGCTTT 57.046 29.630 0.00 0.00 0.00 3.51
131 132 9.953565 AGTATATTTAAGTGTTCAGGCTTTACA 57.046 29.630 0.00 0.00 0.00 2.41
135 136 4.918810 AAGTGTTCAGGCTTTACAAAGG 57.081 40.909 4.01 0.00 36.53 3.11
136 137 3.898482 AGTGTTCAGGCTTTACAAAGGT 58.102 40.909 4.01 0.00 36.53 3.50
137 138 4.278310 AGTGTTCAGGCTTTACAAAGGTT 58.722 39.130 4.01 0.00 36.53 3.50
138 139 4.709886 AGTGTTCAGGCTTTACAAAGGTTT 59.290 37.500 4.01 0.00 36.53 3.27
139 140 5.186992 AGTGTTCAGGCTTTACAAAGGTTTT 59.813 36.000 4.01 0.00 36.53 2.43
140 141 5.872617 GTGTTCAGGCTTTACAAAGGTTTTT 59.127 36.000 4.01 0.00 36.53 1.94
237 238 9.946165 GTAGTATACAAAAAGTGTTCAAGCTTT 57.054 29.630 5.50 0.00 42.43 3.51
243 244 8.825667 ACAAAAAGTGTTCAAGCTTTAAGAAA 57.174 26.923 0.00 0.00 37.01 2.52
244 245 8.708742 ACAAAAAGTGTTCAAGCTTTAAGAAAC 58.291 29.630 0.00 0.00 37.01 2.78
245 246 8.925700 CAAAAAGTGTTCAAGCTTTAAGAAACT 58.074 29.630 0.00 2.31 34.26 2.66
246 247 9.489084 AAAAAGTGTTCAAGCTTTAAGAAACTT 57.511 25.926 0.00 7.71 34.26 2.66
247 248 9.489084 AAAAGTGTTCAAGCTTTAAGAAACTTT 57.511 25.926 18.99 18.99 36.01 2.66
337 338 6.843069 ATGTACCTGTTCATTTTGTTTTGC 57.157 33.333 0.00 0.00 0.00 3.68
338 339 5.724328 TGTACCTGTTCATTTTGTTTTGCA 58.276 33.333 0.00 0.00 0.00 4.08
339 340 6.166279 TGTACCTGTTCATTTTGTTTTGCAA 58.834 32.000 0.00 0.00 34.87 4.08
340 341 5.799681 ACCTGTTCATTTTGTTTTGCAAG 57.200 34.783 0.00 0.00 38.47 4.01
341 342 5.486526 ACCTGTTCATTTTGTTTTGCAAGA 58.513 33.333 0.00 0.00 38.47 3.02
342 343 6.114767 ACCTGTTCATTTTGTTTTGCAAGAT 58.885 32.000 0.00 0.00 38.47 2.40
343 344 6.598850 ACCTGTTCATTTTGTTTTGCAAGATT 59.401 30.769 0.00 0.00 38.47 2.40
344 345 7.121020 ACCTGTTCATTTTGTTTTGCAAGATTT 59.879 29.630 0.00 0.00 38.47 2.17
345 346 7.969508 CCTGTTCATTTTGTTTTGCAAGATTTT 59.030 29.630 0.00 0.00 38.47 1.82
346 347 9.344309 CTGTTCATTTTGTTTTGCAAGATTTTT 57.656 25.926 0.00 0.00 38.47 1.94
347 348 9.125906 TGTTCATTTTGTTTTGCAAGATTTTTG 57.874 25.926 0.00 0.00 38.47 2.44
348 349 9.127006 GTTCATTTTGTTTTGCAAGATTTTTGT 57.873 25.926 0.00 0.00 38.47 2.83
349 350 9.688592 TTCATTTTGTTTTGCAAGATTTTTGTT 57.311 22.222 0.00 0.00 38.47 2.83
350 351 9.688592 TCATTTTGTTTTGCAAGATTTTTGTTT 57.311 22.222 0.00 0.00 38.47 2.83
404 405 3.902881 AAAACAGTGCAAAATGGGTCA 57.097 38.095 0.00 0.00 0.00 4.02
405 406 4.420522 AAAACAGTGCAAAATGGGTCAT 57.579 36.364 0.00 0.00 0.00 3.06
406 407 5.543507 AAAACAGTGCAAAATGGGTCATA 57.456 34.783 0.00 0.00 0.00 2.15
407 408 4.789012 AACAGTGCAAAATGGGTCATAG 57.211 40.909 0.00 0.00 0.00 2.23
408 409 3.091545 ACAGTGCAAAATGGGTCATAGG 58.908 45.455 0.00 0.00 0.00 2.57
409 410 2.428171 CAGTGCAAAATGGGTCATAGGG 59.572 50.000 0.00 0.00 0.00 3.53
410 411 2.311542 AGTGCAAAATGGGTCATAGGGA 59.688 45.455 0.00 0.00 0.00 4.20
411 412 2.427095 GTGCAAAATGGGTCATAGGGAC 59.573 50.000 0.00 0.00 46.20 4.46
418 419 4.865865 GTCATAGGGACAGCAGCC 57.134 61.111 0.00 0.00 46.19 4.85
419 420 1.147153 GTCATAGGGACAGCAGCCC 59.853 63.158 0.00 0.00 46.19 5.19
464 465 2.553079 AATCGACTTCTCTCGACAGC 57.447 50.000 0.00 0.00 45.14 4.40
465 466 1.745232 ATCGACTTCTCTCGACAGCT 58.255 50.000 0.00 0.00 45.14 4.24
466 467 1.080298 TCGACTTCTCTCGACAGCTC 58.920 55.000 0.00 0.00 37.76 4.09
467 468 0.098025 CGACTTCTCTCGACAGCTCC 59.902 60.000 0.00 0.00 35.58 4.70
468 469 0.454196 GACTTCTCTCGACAGCTCCC 59.546 60.000 0.00 0.00 0.00 4.30
469 470 1.309499 ACTTCTCTCGACAGCTCCCG 61.309 60.000 0.00 0.00 0.00 5.14
470 471 1.999071 CTTCTCTCGACAGCTCCCGG 61.999 65.000 0.00 0.00 0.00 5.73
471 472 2.438614 CTCTCGACAGCTCCCGGA 60.439 66.667 0.73 0.00 0.00 5.14
472 473 1.826054 CTCTCGACAGCTCCCGGAT 60.826 63.158 0.73 0.00 0.00 4.18
473 474 1.791103 CTCTCGACAGCTCCCGGATC 61.791 65.000 0.73 0.00 0.00 3.36
474 475 2.833582 TCGACAGCTCCCGGATCC 60.834 66.667 0.73 0.00 0.00 3.36
475 476 3.147595 CGACAGCTCCCGGATCCA 61.148 66.667 13.41 0.00 0.00 3.41
476 477 2.721167 CGACAGCTCCCGGATCCAA 61.721 63.158 13.41 0.00 0.00 3.53
477 478 1.832912 GACAGCTCCCGGATCCAAT 59.167 57.895 13.41 0.00 0.00 3.16
478 479 0.250081 GACAGCTCCCGGATCCAATC 60.250 60.000 13.41 0.00 0.00 2.67
479 480 0.692419 ACAGCTCCCGGATCCAATCT 60.692 55.000 13.41 0.00 0.00 2.40
480 481 0.250209 CAGCTCCCGGATCCAATCTG 60.250 60.000 13.41 7.26 35.39 2.90
481 482 0.399091 AGCTCCCGGATCCAATCTGA 60.399 55.000 13.41 0.00 37.90 3.27
486 487 1.606480 CCCGGATCCAATCTGACATCG 60.606 57.143 13.41 0.00 37.90 3.84
501 502 3.019003 ATCGACAAGGTCAGGCCGG 62.019 63.158 0.00 0.00 43.70 6.13
504 505 3.553095 GACAAGGTCAGGCCGGCTT 62.553 63.158 28.56 18.19 43.70 4.35
549 550 2.981909 TCGGCGACTCGTTCTGGT 60.982 61.111 4.99 0.00 0.00 4.00
552 553 2.338984 GCGACTCGTTCTGGTGGT 59.661 61.111 0.00 0.00 0.00 4.16
554 555 1.658114 CGACTCGTTCTGGTGGTGA 59.342 57.895 0.00 0.00 0.00 4.02
555 556 0.243907 CGACTCGTTCTGGTGGTGAT 59.756 55.000 0.00 0.00 0.00 3.06
557 558 2.478031 CGACTCGTTCTGGTGGTGATAG 60.478 54.545 0.00 0.00 0.00 2.08
584 585 1.567357 TCGGTGGTCCATGAATCTCA 58.433 50.000 0.00 0.00 0.00 3.27
590 591 4.818546 GGTGGTCCATGAATCTCAATGTAG 59.181 45.833 0.00 0.00 0.00 2.74
597 598 9.774742 GTCCATGAATCTCAATGTAGTTTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
631 632 4.213482 GTGCTTTGTACTTTCGGTGAATCT 59.787 41.667 0.00 0.00 0.00 2.40
633 634 5.049680 TGCTTTGTACTTTCGGTGAATCTTC 60.050 40.000 0.00 0.00 0.00 2.87
634 635 5.585500 TTTGTACTTTCGGTGAATCTTCG 57.415 39.130 0.00 0.00 0.00 3.79
636 637 3.985279 TGTACTTTCGGTGAATCTTCGTG 59.015 43.478 0.00 0.00 0.00 4.35
637 638 3.380479 ACTTTCGGTGAATCTTCGTGA 57.620 42.857 0.00 0.00 0.00 4.35
643 644 6.628919 TTCGGTGAATCTTCGTGATAGATA 57.371 37.500 0.00 0.00 34.45 1.98
650 651 9.853555 GTGAATCTTCGTGATAGATATGATTCT 57.146 33.333 0.00 0.00 39.21 2.40
655 656 9.481340 TCTTCGTGATAGATATGATTCTTTTGG 57.519 33.333 0.00 0.00 0.00 3.28
657 658 9.481340 TTCGTGATAGATATGATTCTTTTGGAG 57.519 33.333 0.00 0.00 0.00 3.86
717 718 5.632034 ATCCTTGAGACAAGGGTATTACC 57.368 43.478 24.22 4.11 37.99 2.85
734 735 3.059982 CGCCAAGACTGGAGGTGA 58.940 61.111 0.00 0.00 46.92 4.02
735 736 1.374758 CGCCAAGACTGGAGGTGAC 60.375 63.158 0.00 0.00 46.92 3.67
736 737 1.374758 GCCAAGACTGGAGGTGACG 60.375 63.158 0.00 0.00 46.92 4.35
737 738 1.293498 CCAAGACTGGAGGTGACGG 59.707 63.158 0.00 0.00 46.92 4.79
738 739 1.374758 CAAGACTGGAGGTGACGGC 60.375 63.158 0.00 0.00 0.00 5.68
739 740 2.584391 AAGACTGGAGGTGACGGCC 61.584 63.158 0.00 0.00 0.00 6.13
763 764 4.754667 GGACGCAAGACCCGGGAC 62.755 72.222 32.02 23.52 46.80 4.46
796 797 2.044946 ACCGCTCCTTCCATTGGC 60.045 61.111 0.00 0.00 0.00 4.52
798 799 3.204827 CGCTCCTTCCATTGGCCG 61.205 66.667 0.00 0.00 0.00 6.13
799 800 3.521796 GCTCCTTCCATTGGCCGC 61.522 66.667 0.00 0.00 0.00 6.53
800 801 3.204827 CTCCTTCCATTGGCCGCG 61.205 66.667 0.00 0.00 0.00 6.46
827 836 3.056328 GCAGGCCGACAGTTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
835 844 1.671379 GACAGTTTCCCGTCCTGCC 60.671 63.158 0.00 0.00 0.00 4.85
836 845 2.359975 CAGTTTCCCGTCCTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
837 846 3.647771 AGTTTCCCGTCCTGCCCC 61.648 66.667 0.00 0.00 0.00 5.80
838 847 3.647771 GTTTCCCGTCCTGCCCCT 61.648 66.667 0.00 0.00 0.00 4.79
1049 1066 1.199615 GGTTCCTCTCCTCTCCCTTG 58.800 60.000 0.00 0.00 0.00 3.61
1107 1127 5.316167 GCCAATGGGGAATTTTCTTTCTTT 58.684 37.500 0.00 0.00 40.01 2.52
1111 1131 8.949177 CCAATGGGGAATTTTCTTTCTTTTATG 58.051 33.333 0.00 0.00 40.01 1.90
1134 1154 0.305922 GCTCTATGCGTGAATGGTGC 59.694 55.000 0.00 0.00 0.00 5.01
1139 1159 1.019673 ATGCGTGAATGGTGCTCATC 58.980 50.000 0.00 0.00 34.44 2.92
1144 1164 0.745486 TGAATGGTGCTCATCTGGCG 60.745 55.000 0.00 0.00 34.44 5.69
1171 1191 5.007385 TCTCGAGTTAATTAGGCCAAGAC 57.993 43.478 13.13 0.00 0.00 3.01
1181 1201 0.332972 AGGCCAAGACAGGGGATTTC 59.667 55.000 5.01 0.00 0.00 2.17
1182 1202 0.684479 GGCCAAGACAGGGGATTTCC 60.684 60.000 0.00 0.00 0.00 3.13
1206 1226 1.481363 TGATTGTATGCGTTACCCGGA 59.519 47.619 0.73 0.00 42.70 5.14
1215 1235 0.526954 CGTTACCCGGACGAATGAGG 60.527 60.000 0.73 0.00 42.82 3.86
1216 1236 0.808847 GTTACCCGGACGAATGAGGC 60.809 60.000 0.73 0.00 0.00 4.70
1217 1237 2.287457 TTACCCGGACGAATGAGGCG 62.287 60.000 0.73 0.00 0.00 5.52
1218 1238 4.891727 CCCGGACGAATGAGGCGG 62.892 72.222 0.73 0.00 0.00 6.13
1219 1239 4.891727 CCGGACGAATGAGGCGGG 62.892 72.222 0.00 0.00 0.00 6.13
1220 1240 3.833645 CGGACGAATGAGGCGGGA 61.834 66.667 0.00 0.00 0.00 5.14
1221 1241 2.822399 GGACGAATGAGGCGGGAT 59.178 61.111 0.00 0.00 0.00 3.85
1222 1242 1.595382 GGACGAATGAGGCGGGATG 60.595 63.158 0.00 0.00 0.00 3.51
1223 1243 1.595382 GACGAATGAGGCGGGATGG 60.595 63.158 0.00 0.00 0.00 3.51
1224 1244 2.028125 GACGAATGAGGCGGGATGGA 62.028 60.000 0.00 0.00 0.00 3.41
1258 1288 2.042464 GTGGATCAGGCTCTGTATCCA 58.958 52.381 19.85 19.85 41.30 3.41
1259 1289 2.036992 GTGGATCAGGCTCTGTATCCAG 59.963 54.545 21.95 0.00 42.62 3.86
1260 1290 1.001860 GGATCAGGCTCTGTATCCAGC 59.998 57.143 18.06 0.00 37.72 4.85
1264 1294 2.093288 TCAGGCTCTGTATCCAGCAAAG 60.093 50.000 2.68 0.00 38.66 2.77
1283 1313 0.933097 GGCAGATGCGTAGATGTGTG 59.067 55.000 0.00 0.00 43.26 3.82
1285 1315 2.002586 GCAGATGCGTAGATGTGTGTT 58.997 47.619 0.00 0.00 0.00 3.32
1286 1316 2.029728 GCAGATGCGTAGATGTGTGTTC 59.970 50.000 0.00 0.00 0.00 3.18
1296 1326 0.523072 ATGTGTGTTCGAGCAATGCC 59.477 50.000 2.60 0.00 0.00 4.40
1404 1434 2.411701 CGCAAGCTCGATCCCGTA 59.588 61.111 0.00 0.00 37.05 4.02
1405 1435 1.226859 CGCAAGCTCGATCCCGTAA 60.227 57.895 0.00 0.00 37.05 3.18
1406 1436 0.597637 CGCAAGCTCGATCCCGTAAT 60.598 55.000 0.00 0.00 37.05 1.89
1407 1437 1.140816 GCAAGCTCGATCCCGTAATC 58.859 55.000 0.00 0.00 37.05 1.75
1408 1438 1.784525 CAAGCTCGATCCCGTAATCC 58.215 55.000 0.00 0.00 37.05 3.01
1409 1439 0.680061 AAGCTCGATCCCGTAATCCC 59.320 55.000 0.00 0.00 37.05 3.85
1410 1440 1.080705 GCTCGATCCCGTAATCCCG 60.081 63.158 0.00 0.00 37.05 5.14
1411 1441 1.803366 GCTCGATCCCGTAATCCCGT 61.803 60.000 0.00 0.00 37.05 5.28
1432 1462 0.389948 GACCTTAGCCGTGTGGTCTG 60.390 60.000 0.00 0.00 43.91 3.51
1433 1463 1.079127 CCTTAGCCGTGTGGTCTGG 60.079 63.158 0.00 0.00 37.67 3.86
1434 1464 1.671742 CTTAGCCGTGTGGTCTGGT 59.328 57.895 0.00 0.00 37.67 4.00
1435 1465 0.034896 CTTAGCCGTGTGGTCTGGTT 59.965 55.000 0.00 0.00 37.67 3.67
1436 1466 0.250124 TTAGCCGTGTGGTCTGGTTG 60.250 55.000 0.00 0.00 37.67 3.77
1437 1467 2.725203 TAGCCGTGTGGTCTGGTTGC 62.725 60.000 0.00 0.00 37.67 4.17
1438 1468 2.111043 CCGTGTGGTCTGGTTGCT 59.889 61.111 0.00 0.00 0.00 3.91
1439 1469 1.369692 CCGTGTGGTCTGGTTGCTA 59.630 57.895 0.00 0.00 0.00 3.49
1440 1470 0.250124 CCGTGTGGTCTGGTTGCTAA 60.250 55.000 0.00 0.00 0.00 3.09
1441 1471 0.865769 CGTGTGGTCTGGTTGCTAAC 59.134 55.000 0.00 0.00 0.00 2.34
1442 1472 0.865769 GTGTGGTCTGGTTGCTAACG 59.134 55.000 0.00 0.00 0.00 3.18
1443 1473 0.753867 TGTGGTCTGGTTGCTAACGA 59.246 50.000 0.00 0.00 0.00 3.85
1444 1474 1.346395 TGTGGTCTGGTTGCTAACGAT 59.654 47.619 0.00 0.00 0.00 3.73
1445 1475 1.732259 GTGGTCTGGTTGCTAACGATG 59.268 52.381 0.00 0.00 0.00 3.84
1446 1476 1.338674 TGGTCTGGTTGCTAACGATGG 60.339 52.381 0.00 0.00 0.00 3.51
1447 1477 0.727398 GTCTGGTTGCTAACGATGGC 59.273 55.000 0.00 0.00 0.00 4.40
1448 1478 0.392461 TCTGGTTGCTAACGATGGCC 60.392 55.000 0.00 0.00 30.79 5.36
1497 1527 4.360563 CACACGAATCTGGTGGTAGTATC 58.639 47.826 0.00 0.00 39.69 2.24
1498 1528 4.098044 CACACGAATCTGGTGGTAGTATCT 59.902 45.833 0.00 0.00 39.69 1.98
1499 1529 4.098044 ACACGAATCTGGTGGTAGTATCTG 59.902 45.833 0.00 0.00 39.69 2.90
1500 1530 4.098044 CACGAATCTGGTGGTAGTATCTGT 59.902 45.833 0.00 0.00 0.00 3.41
1501 1531 4.098044 ACGAATCTGGTGGTAGTATCTGTG 59.902 45.833 0.00 0.00 0.00 3.66
1502 1532 4.499865 CGAATCTGGTGGTAGTATCTGTGG 60.500 50.000 0.00 0.00 0.00 4.17
1613 1643 2.307098 AGATCCTTGAGTGAAACAGGGG 59.693 50.000 0.00 0.00 41.43 4.79
1614 1644 1.814429 TCCTTGAGTGAAACAGGGGA 58.186 50.000 0.00 0.00 41.43 4.81
1615 1645 2.131854 TCCTTGAGTGAAACAGGGGAA 58.868 47.619 0.00 0.00 41.43 3.97
1616 1646 2.512056 TCCTTGAGTGAAACAGGGGAAA 59.488 45.455 0.00 0.00 41.43 3.13
1617 1647 2.623416 CCTTGAGTGAAACAGGGGAAAC 59.377 50.000 0.00 0.00 41.43 2.78
1618 1648 3.287222 CTTGAGTGAAACAGGGGAAACA 58.713 45.455 0.00 0.00 41.43 2.83
1619 1649 2.930950 TGAGTGAAACAGGGGAAACAG 58.069 47.619 0.00 0.00 41.43 3.16
1620 1650 2.230660 GAGTGAAACAGGGGAAACAGG 58.769 52.381 0.00 0.00 41.43 4.00
1621 1651 1.850345 AGTGAAACAGGGGAAACAGGA 59.150 47.619 0.00 0.00 41.43 3.86
1663 1694 0.331616 ACCCCTTCCCTTTTCGGATG 59.668 55.000 0.00 0.00 33.16 3.51
1722 1756 0.542232 ACGGCAGACTCTTGGTACCT 60.542 55.000 14.36 0.00 0.00 3.08
1731 1765 3.158676 ACTCTTGGTACCTCTGTGAGAC 58.841 50.000 14.36 0.00 0.00 3.36
1735 1769 0.896226 GGTACCTCTGTGAGACCACC 59.104 60.000 4.06 0.00 42.53 4.61
1785 1819 4.774200 AGCTTTGTTTTAGATGGATTGGCT 59.226 37.500 0.00 0.00 0.00 4.75
1810 1847 7.872113 TGTTAACTAGTACTAGGTCCTAAGC 57.128 40.000 29.05 13.49 37.49 3.09
1830 1867 1.912043 CTTCAGTTCCAGGGGAGACAT 59.088 52.381 0.00 0.00 31.21 3.06
1851 1888 8.842280 AGACATTTCATTCGTTTAAACCAACTA 58.158 29.630 12.66 0.00 0.00 2.24
1852 1889 9.113876 GACATTTCATTCGTTTAAACCAACTAG 57.886 33.333 12.66 1.38 0.00 2.57
1853 1890 8.626526 ACATTTCATTCGTTTAAACCAACTAGT 58.373 29.630 12.66 0.00 0.00 2.57
1906 1943 6.652245 CAGTTTTGCATGGAAATCTTTGAAC 58.348 36.000 17.62 9.67 0.00 3.18
1939 1976 6.381498 TCACACCCTTCCAATTTATAGTGA 57.619 37.500 0.00 0.00 0.00 3.41
1968 2050 6.838198 TCACCAAATATTATGCGTACAGTC 57.162 37.500 0.00 0.00 0.00 3.51
1969 2051 5.756347 TCACCAAATATTATGCGTACAGTCC 59.244 40.000 0.00 0.00 0.00 3.85
1970 2052 5.525745 CACCAAATATTATGCGTACAGTCCA 59.474 40.000 0.00 0.00 0.00 4.02
2053 2135 7.832503 ATGCAATTAACTTTTTGGAGCATAC 57.167 32.000 0.00 0.00 38.29 2.39
2126 2208 1.539827 GCCACGCCTCAAAACATACTT 59.460 47.619 0.00 0.00 0.00 2.24
2265 2347 6.712547 CAGAAATATCCCCAGGATTCTGTTAC 59.287 42.308 13.68 0.00 39.79 2.50
2283 2365 4.080638 TGTTACTGTCATGTGGCATCCATA 60.081 41.667 0.00 0.00 35.28 2.74
2750 2832 1.339929 GCCGGATTTGGTTTGTTGAGT 59.660 47.619 5.05 0.00 0.00 3.41
2792 2874 3.753294 ATAGGAGGAAGTATTGTGGCG 57.247 47.619 0.00 0.00 0.00 5.69
2927 3009 4.844349 TCCTAGAAAAACATCTCCAGGG 57.156 45.455 0.00 0.00 29.61 4.45
2971 3053 5.339530 CCCATGAGAGGTATGGTTTTCTTCT 60.340 44.000 0.00 0.00 42.85 2.85
2978 3060 8.712228 AGAGGTATGGTTTTCTTCTGATTTTT 57.288 30.769 0.00 0.00 0.00 1.94
3041 3206 7.177498 TCGTGAAAGCATAATTAGCATGTAG 57.823 36.000 0.00 0.00 0.00 2.74
3042 3207 6.761242 TCGTGAAAGCATAATTAGCATGTAGT 59.239 34.615 0.00 0.00 0.00 2.73
3043 3208 7.923878 TCGTGAAAGCATAATTAGCATGTAGTA 59.076 33.333 0.00 0.00 0.00 1.82
3044 3209 8.217115 CGTGAAAGCATAATTAGCATGTAGTAG 58.783 37.037 0.00 0.00 0.00 2.57
3070 3235 0.607217 TGCTGGTGATCAAGTGCTGG 60.607 55.000 0.00 0.00 0.00 4.85
3131 3296 6.036408 GCTTGCAACTTTTCTCATTCAACTTT 59.964 34.615 0.00 0.00 0.00 2.66
3132 3297 7.413328 GCTTGCAACTTTTCTCATTCAACTTTT 60.413 33.333 0.00 0.00 0.00 2.27
3141 3324 5.371526 TCTCATTCAACTTTTCAGCTGAGT 58.628 37.500 17.43 8.96 32.65 3.41
3152 3335 5.596836 TTTCAGCTGAGTTGGAATTTTGT 57.403 34.783 17.43 0.00 0.00 2.83
3153 3336 6.707440 TTTCAGCTGAGTTGGAATTTTGTA 57.293 33.333 17.43 0.00 0.00 2.41
3154 3337 6.707440 TTCAGCTGAGTTGGAATTTTGTAA 57.293 33.333 17.43 0.00 0.00 2.41
3155 3338 6.899393 TCAGCTGAGTTGGAATTTTGTAAT 57.101 33.333 13.74 0.00 0.00 1.89
3156 3339 7.288810 TCAGCTGAGTTGGAATTTTGTAATT 57.711 32.000 13.74 0.00 36.68 1.40
3159 3342 7.439056 CAGCTGAGTTGGAATTTTGTAATTGTT 59.561 33.333 8.42 0.00 34.16 2.83
3161 3344 8.611757 GCTGAGTTGGAATTTTGTAATTGTTTT 58.388 29.630 0.00 0.00 34.16 2.43
3182 3375 8.250332 TGTTTTCTTTTCTAAGCTGATGTGTTT 58.750 29.630 0.00 0.00 0.00 2.83
3191 3395 5.536554 AAGCTGATGTGTTTGATTCTACG 57.463 39.130 0.00 0.00 0.00 3.51
3201 3405 7.632721 TGTGTTTGATTCTACGTTAACTTTCC 58.367 34.615 3.71 0.00 0.00 3.13
3204 3408 9.491675 TGTTTGATTCTACGTTAACTTTCCATA 57.508 29.630 3.71 0.00 0.00 2.74
3265 3469 3.998913 TCTCATGTAAATGGCAGGTCA 57.001 42.857 0.00 0.00 0.00 4.02
3459 3664 1.856802 ACGAGTACAAACCAACGGAC 58.143 50.000 0.00 0.00 0.00 4.79
3467 3672 2.360801 ACAAACCAACGGACATTTCCAG 59.639 45.455 0.00 0.00 43.00 3.86
3613 3841 5.016831 GGGTCATTTCTTGGTGGAGTAATT 58.983 41.667 0.00 0.00 0.00 1.40
3649 3877 0.179081 GACACTACCCGGATTCAGGC 60.179 60.000 0.73 0.00 0.00 4.85
3961 4189 2.736144 ACGCAAAGACGGTGAATCTA 57.264 45.000 0.00 0.00 37.37 1.98
4021 4249 1.688772 GGCTGCTGACCATGATGATT 58.311 50.000 0.00 0.00 0.00 2.57
4084 4312 3.335534 GTGTTCAAGCGCGACCGT 61.336 61.111 12.10 0.00 36.67 4.83
4191 4430 3.764885 AATGCGGTTAGTTGATTCAGC 57.235 42.857 0.00 0.00 0.00 4.26
4224 4465 3.769739 TGGTGCAGTTGACAGAATACT 57.230 42.857 0.00 0.00 0.00 2.12
4225 4466 4.882842 TGGTGCAGTTGACAGAATACTA 57.117 40.909 0.00 0.00 0.00 1.82
4226 4467 4.566004 TGGTGCAGTTGACAGAATACTAC 58.434 43.478 0.00 0.00 0.00 2.73
4287 4532 9.185192 CCTTCAGACAAATGAAAAGAAATACAC 57.815 33.333 0.00 0.00 38.66 2.90
4315 4561 4.285517 ACACCTTCAGACAGATGACAAGAT 59.714 41.667 0.00 0.00 0.00 2.40
4426 4676 2.076100 GTCATGTTCAATCTCACCGCA 58.924 47.619 0.00 0.00 0.00 5.69
4427 4677 2.483877 GTCATGTTCAATCTCACCGCAA 59.516 45.455 0.00 0.00 0.00 4.85
4428 4678 3.127548 GTCATGTTCAATCTCACCGCAAT 59.872 43.478 0.00 0.00 0.00 3.56
4466 4721 2.672961 TTGTCGCCTGTAATCCTGAG 57.327 50.000 0.00 0.00 0.00 3.35
4477 4732 6.327934 CCTGTAATCCTGAGCTGAATTTTTG 58.672 40.000 0.00 0.00 0.00 2.44
4508 4763 1.688772 CATTGCCCCTGATCCTGAAG 58.311 55.000 0.00 0.00 0.00 3.02
4511 4766 1.965414 TGCCCCTGATCCTGAAGTAA 58.035 50.000 0.00 0.00 0.00 2.24
4518 4773 5.366768 CCCCTGATCCTGAAGTAATGAACTA 59.633 44.000 0.00 0.00 37.50 2.24
4519 4774 6.126768 CCCCTGATCCTGAAGTAATGAACTAA 60.127 42.308 0.00 0.00 37.50 2.24
4520 4775 7.338710 CCCTGATCCTGAAGTAATGAACTAAA 58.661 38.462 0.00 0.00 37.50 1.85
4521 4776 7.281100 CCCTGATCCTGAAGTAATGAACTAAAC 59.719 40.741 0.00 0.00 37.50 2.01
4523 4778 9.442047 CTGATCCTGAAGTAATGAACTAAACTT 57.558 33.333 0.00 0.00 37.50 2.66
4524 4779 9.219603 TGATCCTGAAGTAATGAACTAAACTTG 57.780 33.333 0.00 0.00 37.50 3.16
4526 4781 7.514721 TCCTGAAGTAATGAACTAAACTTGGT 58.485 34.615 0.00 0.00 37.50 3.67
4527 4782 7.996644 TCCTGAAGTAATGAACTAAACTTGGTT 59.003 33.333 0.00 0.00 37.50 3.67
4528 4783 8.290325 CCTGAAGTAATGAACTAAACTTGGTTC 58.710 37.037 10.73 10.73 45.44 3.62
4537 4792 2.514205 AAACTTGGTTCAGCATGTGC 57.486 45.000 0.00 0.00 42.49 4.57
4556 4811 4.141981 TGTGCAACATTCACTTTGACCAAT 60.142 37.500 0.00 0.00 45.67 3.16
4557 4812 4.810491 GTGCAACATTCACTTTGACCAATT 59.190 37.500 0.00 0.00 36.32 2.32
4558 4813 5.294060 GTGCAACATTCACTTTGACCAATTT 59.706 36.000 0.00 0.00 36.32 1.82
4559 4814 5.293814 TGCAACATTCACTTTGACCAATTTG 59.706 36.000 0.00 0.00 0.00 2.32
4560 4815 5.523188 GCAACATTCACTTTGACCAATTTGA 59.477 36.000 0.00 0.00 0.00 2.69
4561 4816 6.509997 GCAACATTCACTTTGACCAATTTGAC 60.510 38.462 0.00 0.00 0.00 3.18
4562 4817 6.219417 ACATTCACTTTGACCAATTTGACA 57.781 33.333 0.00 0.00 0.00 3.58
4563 4818 6.042143 ACATTCACTTTGACCAATTTGACAC 58.958 36.000 0.00 0.00 0.00 3.67
4564 4819 5.913137 TTCACTTTGACCAATTTGACACT 57.087 34.783 0.00 0.00 0.00 3.55
4565 4820 5.499139 TCACTTTGACCAATTTGACACTC 57.501 39.130 0.00 0.00 0.00 3.51
4569 4824 7.502226 TCACTTTGACCAATTTGACACTCTAAT 59.498 33.333 0.00 0.00 0.00 1.73
4572 4827 7.815840 TTGACCAATTTGACACTCTAATTGA 57.184 32.000 16.05 0.38 45.65 2.57
4588 4850 8.470002 ACTCTAATTGAATTTGTATTTGCCTCC 58.530 33.333 0.00 0.00 0.00 4.30
4596 4858 4.584638 TTGTATTTGCCTCCTGTATGGT 57.415 40.909 0.00 0.00 37.07 3.55
4621 4884 4.638421 CCTCCGGCATTATGTTTTCTTGTA 59.362 41.667 0.00 0.00 0.00 2.41
4645 4937 3.188048 AGAAGCTGCATCTTTTGAGTTCG 59.812 43.478 3.98 0.00 0.00 3.95
4682 4974 3.304659 GCATCCACCACAACTTTGTAGTG 60.305 47.826 12.17 12.17 45.96 2.74
4683 4975 2.294074 TCCACCACAACTTTGTAGTGC 58.706 47.619 13.31 0.00 45.35 4.40
4684 4976 2.020720 CCACCACAACTTTGTAGTGCA 58.979 47.619 13.31 0.00 45.35 4.57
4692 4984 4.941263 ACAACTTTGTAGTGCAGTTTCTCA 59.059 37.500 0.00 0.00 40.16 3.27
4695 4987 5.126067 ACTTTGTAGTGCAGTTTCTCATGT 58.874 37.500 0.00 0.00 31.99 3.21
4697 4989 5.422666 TTGTAGTGCAGTTTCTCATGTTG 57.577 39.130 0.00 0.00 0.00 3.33
4700 5164 1.337703 GTGCAGTTTCTCATGTTGCCA 59.662 47.619 0.00 0.00 33.98 4.92
4707 5171 4.869861 AGTTTCTCATGTTGCCAAAAACAC 59.130 37.500 3.75 0.00 42.56 3.32
4710 5174 3.125316 CTCATGTTGCCAAAAACACCAG 58.875 45.455 0.00 0.00 42.56 4.00
4713 5177 3.902881 TGTTGCCAAAAACACCAGATT 57.097 38.095 0.00 0.00 35.16 2.40
4715 5179 4.942852 TGTTGCCAAAAACACCAGATTAG 58.057 39.130 0.00 0.00 35.16 1.73
4716 5180 4.202202 TGTTGCCAAAAACACCAGATTAGG 60.202 41.667 0.00 0.00 35.16 2.69
4721 5185 6.183361 TGCCAAAAACACCAGATTAGGAAATT 60.183 34.615 0.00 0.00 0.00 1.82
4723 5187 8.040727 GCCAAAAACACCAGATTAGGAAATTAT 58.959 33.333 0.00 0.00 0.00 1.28
4782 5246 9.979578 ACAATAAATCTTGTAAACAATGAGCAA 57.020 25.926 0.00 0.00 37.58 3.91
4787 5251 7.713764 ATCTTGTAAACAATGAGCAAAAACC 57.286 32.000 0.00 0.00 35.02 3.27
4788 5252 5.746245 TCTTGTAAACAATGAGCAAAAACCG 59.254 36.000 0.00 0.00 35.02 4.44
4789 5253 3.799420 TGTAAACAATGAGCAAAAACCGC 59.201 39.130 0.00 0.00 0.00 5.68
4797 5261 2.360483 TGAGCAAAAACCGCTGATTCAA 59.640 40.909 0.00 0.00 40.63 2.69
4815 5279 7.038048 TGATTCAAACTTGTAAACAATGCACA 58.962 30.769 0.00 0.00 35.02 4.57
4821 5285 5.101628 ACTTGTAAACAATGCACACAGTTG 58.898 37.500 0.00 0.00 35.02 3.16
4824 5288 0.248990 AACAATGCACACAGTTGGCG 60.249 50.000 0.00 0.00 0.00 5.69
4829 5293 1.159713 TGCACACAGTTGGCGAAGAG 61.160 55.000 0.00 0.00 0.00 2.85
4853 5317 4.071961 TGAGCACTTCTACTTGCAAGAA 57.928 40.909 32.50 15.78 41.48 2.52
4861 5511 5.932661 CTTCTACTTGCAAGAAGCTTAACC 58.067 41.667 32.50 0.00 42.44 2.85
4867 5517 5.770162 ACTTGCAAGAAGCTTAACCTACAAT 59.230 36.000 32.50 0.70 45.94 2.71
4905 5555 3.894759 ACAAATGTAGGATGCTCATGCT 58.105 40.909 8.84 8.84 42.33 3.79
4923 5575 5.713389 TCATGCTTTCAAATGGAGAATCAGT 59.287 36.000 0.00 0.00 36.25 3.41
4941 5593 7.555554 AGAATCAGTCCATGAACTAAATCTTGG 59.444 37.037 0.00 3.52 42.53 3.61
4961 5653 1.135721 GAGGCATGCAGGACCAAAATC 59.864 52.381 21.36 0.00 0.00 2.17
4962 5654 0.896923 GGCATGCAGGACCAAAATCA 59.103 50.000 21.36 0.00 0.00 2.57
5003 5695 6.902224 AAACTGGACAACTTTAAAACATGC 57.098 33.333 0.00 0.00 0.00 4.06
5004 5696 4.944048 ACTGGACAACTTTAAAACATGCC 58.056 39.130 0.00 0.00 0.00 4.40
5020 5712 1.908344 TGCCTTGCTGCATTCTGTAA 58.092 45.000 1.84 0.00 36.04 2.41
5021 5713 1.541147 TGCCTTGCTGCATTCTGTAAC 59.459 47.619 1.84 0.00 36.04 2.50
5023 5715 2.159462 GCCTTGCTGCATTCTGTAACTC 60.159 50.000 1.84 0.00 0.00 3.01
5024 5716 3.341823 CCTTGCTGCATTCTGTAACTCT 58.658 45.455 1.84 0.00 0.00 3.24
5025 5717 3.126514 CCTTGCTGCATTCTGTAACTCTG 59.873 47.826 1.84 0.00 0.00 3.35
5035 5727 2.972713 TCTGTAACTCTGCTTCCCAACT 59.027 45.455 0.00 0.00 0.00 3.16
5043 5735 3.420893 TCTGCTTCCCAACTAACAATGG 58.579 45.455 0.00 0.00 36.42 3.16
5044 5736 3.157087 CTGCTTCCCAACTAACAATGGT 58.843 45.455 0.00 0.00 34.79 3.55
5045 5737 3.571590 TGCTTCCCAACTAACAATGGTT 58.428 40.909 0.00 0.00 41.06 3.67
5082 5774 9.917887 AGATTTCCATCTAGTTGAGAAATTCAT 57.082 29.630 19.90 12.62 38.06 2.57
5084 5776 8.868522 TTTCCATCTAGTTGAGAAATTCATGT 57.131 30.769 2.20 0.00 37.85 3.21
5085 5777 8.868522 TTCCATCTAGTTGAGAAATTCATGTT 57.131 30.769 2.20 0.00 37.85 2.71
5086 5778 8.498054 TCCATCTAGTTGAGAAATTCATGTTC 57.502 34.615 2.20 0.00 37.85 3.18
5088 5780 7.337689 CCATCTAGTTGAGAAATTCATGTTCCA 59.662 37.037 2.20 0.00 37.85 3.53
5089 5781 7.672983 TCTAGTTGAGAAATTCATGTTCCAC 57.327 36.000 0.00 0.00 35.27 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.664082 TTGCTTTGAACTTTGAACAATTTCA 57.336 28.000 7.54 7.54 40.14 2.69
70 71 8.947304 TTTTGCTTTGAACTTTGAACAATTTC 57.053 26.923 0.00 0.00 0.00 2.17
75 76 9.376075 TGAATATTTTGCTTTGAACTTTGAACA 57.624 25.926 0.00 0.00 0.00 3.18
78 79 9.545105 ACATGAATATTTTGCTTTGAACTTTGA 57.455 25.926 0.00 0.00 0.00 2.69
99 100 9.542462 GCCTGAACACTTAAATATACTACATGA 57.458 33.333 0.00 0.00 0.00 3.07
100 101 9.547753 AGCCTGAACACTTAAATATACTACATG 57.452 33.333 0.00 0.00 0.00 3.21
102 103 9.953565 AAAGCCTGAACACTTAAATATACTACA 57.046 29.630 0.00 0.00 0.00 2.74
105 106 9.953565 TGTAAAGCCTGAACACTTAAATATACT 57.046 29.630 0.00 0.00 0.00 2.12
109 110 8.573035 CCTTTGTAAAGCCTGAACACTTAAATA 58.427 33.333 0.00 0.00 34.69 1.40
110 111 7.069455 ACCTTTGTAAAGCCTGAACACTTAAAT 59.931 33.333 0.00 0.00 34.69 1.40
111 112 6.378848 ACCTTTGTAAAGCCTGAACACTTAAA 59.621 34.615 0.00 0.00 34.69 1.52
112 113 5.889289 ACCTTTGTAAAGCCTGAACACTTAA 59.111 36.000 0.00 0.00 34.69 1.85
113 114 5.442391 ACCTTTGTAAAGCCTGAACACTTA 58.558 37.500 0.00 0.00 34.69 2.24
114 115 4.278310 ACCTTTGTAAAGCCTGAACACTT 58.722 39.130 0.00 0.00 34.69 3.16
115 116 3.898482 ACCTTTGTAAAGCCTGAACACT 58.102 40.909 0.00 0.00 34.69 3.55
116 117 4.649088 AACCTTTGTAAAGCCTGAACAC 57.351 40.909 0.00 0.00 34.69 3.32
117 118 5.669164 AAAACCTTTGTAAAGCCTGAACA 57.331 34.783 0.00 0.00 34.69 3.18
118 119 6.344572 CAAAAACCTTTGTAAAGCCTGAAC 57.655 37.500 0.00 0.00 37.69 3.18
205 206 9.772973 TGAACACTTTTTGTATACTACACAGAT 57.227 29.630 4.17 0.00 37.51 2.90
206 207 9.602568 TTGAACACTTTTTGTATACTACACAGA 57.397 29.630 4.17 0.00 37.51 3.41
207 208 9.864034 CTTGAACACTTTTTGTATACTACACAG 57.136 33.333 4.17 0.00 37.51 3.66
208 209 8.339714 GCTTGAACACTTTTTGTATACTACACA 58.660 33.333 4.17 0.00 37.51 3.72
209 210 8.557029 AGCTTGAACACTTTTTGTATACTACAC 58.443 33.333 4.17 0.00 37.51 2.90
210 211 8.671384 AGCTTGAACACTTTTTGTATACTACA 57.329 30.769 4.17 0.00 37.51 2.74
211 212 9.946165 AAAGCTTGAACACTTTTTGTATACTAC 57.054 29.630 0.00 0.00 37.51 2.73
217 218 9.915629 TTTCTTAAAGCTTGAACACTTTTTGTA 57.084 25.926 0.00 0.00 37.51 2.41
218 219 8.708742 GTTTCTTAAAGCTTGAACACTTTTTGT 58.291 29.630 0.00 0.00 41.74 2.83
219 220 8.925700 AGTTTCTTAAAGCTTGAACACTTTTTG 58.074 29.630 0.00 0.00 37.33 2.44
220 221 9.489084 AAGTTTCTTAAAGCTTGAACACTTTTT 57.511 25.926 0.00 0.00 34.97 1.94
221 222 9.489084 AAAGTTTCTTAAAGCTTGAACACTTTT 57.511 25.926 18.99 8.11 36.24 2.27
311 312 8.987890 GCAAAACAAAATGAACAGGTACATAAT 58.012 29.630 0.00 0.00 0.00 1.28
312 313 7.981789 TGCAAAACAAAATGAACAGGTACATAA 59.018 29.630 0.00 0.00 0.00 1.90
313 314 7.492524 TGCAAAACAAAATGAACAGGTACATA 58.507 30.769 0.00 0.00 0.00 2.29
314 315 6.344500 TGCAAAACAAAATGAACAGGTACAT 58.656 32.000 0.00 0.00 0.00 2.29
315 316 5.724328 TGCAAAACAAAATGAACAGGTACA 58.276 33.333 0.00 0.00 0.00 2.90
316 317 6.533367 TCTTGCAAAACAAAATGAACAGGTAC 59.467 34.615 0.00 0.00 37.96 3.34
317 318 6.634805 TCTTGCAAAACAAAATGAACAGGTA 58.365 32.000 0.00 0.00 37.96 3.08
318 319 5.486526 TCTTGCAAAACAAAATGAACAGGT 58.513 33.333 0.00 0.00 37.96 4.00
319 320 6.607735 ATCTTGCAAAACAAAATGAACAGG 57.392 33.333 0.00 0.00 37.96 4.00
320 321 8.898983 AAAATCTTGCAAAACAAAATGAACAG 57.101 26.923 0.00 0.00 37.96 3.16
321 322 9.125906 CAAAAATCTTGCAAAACAAAATGAACA 57.874 25.926 0.00 0.00 37.96 3.18
322 323 9.127006 ACAAAAATCTTGCAAAACAAAATGAAC 57.873 25.926 0.00 0.00 37.96 3.18
323 324 9.688592 AACAAAAATCTTGCAAAACAAAATGAA 57.311 22.222 0.00 0.00 37.96 2.57
324 325 9.688592 AAACAAAAATCTTGCAAAACAAAATGA 57.311 22.222 0.00 0.00 37.96 2.57
383 384 4.213564 TGACCCATTTTGCACTGTTTTT 57.786 36.364 0.00 0.00 0.00 1.94
384 385 3.902881 TGACCCATTTTGCACTGTTTT 57.097 38.095 0.00 0.00 0.00 2.43
385 386 4.021192 CCTATGACCCATTTTGCACTGTTT 60.021 41.667 0.00 0.00 0.00 2.83
386 387 3.511146 CCTATGACCCATTTTGCACTGTT 59.489 43.478 0.00 0.00 0.00 3.16
387 388 3.091545 CCTATGACCCATTTTGCACTGT 58.908 45.455 0.00 0.00 0.00 3.55
388 389 2.428171 CCCTATGACCCATTTTGCACTG 59.572 50.000 0.00 0.00 0.00 3.66
389 390 2.311542 TCCCTATGACCCATTTTGCACT 59.688 45.455 0.00 0.00 0.00 4.40
390 391 2.427095 GTCCCTATGACCCATTTTGCAC 59.573 50.000 0.00 0.00 38.09 4.57
391 392 2.042297 TGTCCCTATGACCCATTTTGCA 59.958 45.455 0.00 0.00 43.78 4.08
392 393 2.689983 CTGTCCCTATGACCCATTTTGC 59.310 50.000 0.00 0.00 43.78 3.68
393 394 2.689983 GCTGTCCCTATGACCCATTTTG 59.310 50.000 0.00 0.00 43.78 2.44
394 395 2.311542 TGCTGTCCCTATGACCCATTTT 59.688 45.455 0.00 0.00 43.78 1.82
395 396 1.922447 TGCTGTCCCTATGACCCATTT 59.078 47.619 0.00 0.00 43.78 2.32
396 397 1.492176 CTGCTGTCCCTATGACCCATT 59.508 52.381 0.00 0.00 43.78 3.16
397 398 1.135094 CTGCTGTCCCTATGACCCAT 58.865 55.000 0.00 0.00 43.78 4.00
398 399 1.626356 GCTGCTGTCCCTATGACCCA 61.626 60.000 0.00 0.00 43.78 4.51
399 400 1.147153 GCTGCTGTCCCTATGACCC 59.853 63.158 0.00 0.00 43.78 4.46
400 401 1.147153 GGCTGCTGTCCCTATGACC 59.853 63.158 0.00 0.00 43.78 4.02
401 402 1.147153 GGGCTGCTGTCCCTATGAC 59.853 63.158 2.14 0.00 44.72 3.06
402 403 3.647367 GGGCTGCTGTCCCTATGA 58.353 61.111 2.14 0.00 40.66 2.15
447 448 1.080298 GAGCTGTCGAGAGAAGTCGA 58.920 55.000 14.74 0.00 46.52 4.20
448 449 0.098025 GGAGCTGTCGAGAGAAGTCG 59.902 60.000 14.74 0.00 45.01 4.18
449 450 0.454196 GGGAGCTGTCGAGAGAAGTC 59.546 60.000 14.74 6.15 45.01 3.01
450 451 1.309499 CGGGAGCTGTCGAGAGAAGT 61.309 60.000 14.74 0.00 45.01 3.01
451 452 1.431440 CGGGAGCTGTCGAGAGAAG 59.569 63.158 14.74 0.00 45.01 2.85
452 453 2.046864 CCGGGAGCTGTCGAGAGAA 61.047 63.158 14.74 0.00 45.01 2.87
453 454 2.272230 ATCCGGGAGCTGTCGAGAGA 62.272 60.000 14.74 0.00 38.16 3.10
454 455 1.791103 GATCCGGGAGCTGTCGAGAG 61.791 65.000 4.74 4.96 0.00 3.20
455 456 1.824329 GATCCGGGAGCTGTCGAGA 60.824 63.158 4.74 0.00 0.00 4.04
456 457 2.725008 GATCCGGGAGCTGTCGAG 59.275 66.667 4.74 0.00 0.00 4.04
457 458 2.833582 GGATCCGGGAGCTGTCGA 60.834 66.667 12.67 0.00 0.00 4.20
458 459 2.032860 ATTGGATCCGGGAGCTGTCG 62.033 60.000 12.67 0.00 0.00 4.35
459 460 0.250081 GATTGGATCCGGGAGCTGTC 60.250 60.000 12.67 4.51 0.00 3.51
460 461 0.692419 AGATTGGATCCGGGAGCTGT 60.692 55.000 12.67 0.00 0.00 4.40
461 462 0.250209 CAGATTGGATCCGGGAGCTG 60.250 60.000 12.67 10.07 0.00 4.24
462 463 0.399091 TCAGATTGGATCCGGGAGCT 60.399 55.000 12.67 0.64 0.00 4.09
463 464 0.250081 GTCAGATTGGATCCGGGAGC 60.250 60.000 7.39 3.04 0.00 4.70
464 465 1.123077 TGTCAGATTGGATCCGGGAG 58.877 55.000 7.39 0.00 0.00 4.30
465 466 1.694150 GATGTCAGATTGGATCCGGGA 59.306 52.381 7.39 0.00 0.00 5.14
466 467 1.606480 CGATGTCAGATTGGATCCGGG 60.606 57.143 7.39 0.00 0.00 5.73
467 468 1.341209 TCGATGTCAGATTGGATCCGG 59.659 52.381 7.39 0.00 0.00 5.14
468 469 2.223805 TGTCGATGTCAGATTGGATCCG 60.224 50.000 7.39 0.00 0.00 4.18
469 470 3.459232 TGTCGATGTCAGATTGGATCC 57.541 47.619 4.20 4.20 0.00 3.36
470 471 3.806521 CCTTGTCGATGTCAGATTGGATC 59.193 47.826 0.00 0.00 0.00 3.36
471 472 3.198635 ACCTTGTCGATGTCAGATTGGAT 59.801 43.478 0.00 0.00 0.00 3.41
472 473 2.567169 ACCTTGTCGATGTCAGATTGGA 59.433 45.455 0.00 0.00 0.00 3.53
473 474 2.932614 GACCTTGTCGATGTCAGATTGG 59.067 50.000 0.00 0.00 0.00 3.16
474 475 3.588955 TGACCTTGTCGATGTCAGATTG 58.411 45.455 6.10 0.00 34.28 2.67
475 476 3.961480 TGACCTTGTCGATGTCAGATT 57.039 42.857 6.10 0.00 34.28 2.40
479 480 0.037326 GCCTGACCTTGTCGATGTCA 60.037 55.000 8.91 8.91 37.45 3.58
480 481 0.741221 GGCCTGACCTTGTCGATGTC 60.741 60.000 0.00 0.00 34.95 3.06
481 482 1.296715 GGCCTGACCTTGTCGATGT 59.703 57.895 0.00 0.00 34.95 3.06
486 487 3.553095 AAGCCGGCCTGACCTTGTC 62.553 63.158 26.15 0.00 35.61 3.18
501 502 4.867599 CCGCTCCCGTACCGAAGC 62.868 72.222 0.00 0.00 0.00 3.86
529 530 4.755614 AGAACGAGTCGCCGACGC 62.756 66.667 13.59 11.60 37.67 5.19
549 550 0.528924 CCGAACGACCACTATCACCA 59.471 55.000 0.00 0.00 0.00 4.17
552 553 0.528924 CCACCGAACGACCACTATCA 59.471 55.000 0.00 0.00 0.00 2.15
554 555 0.529378 GACCACCGAACGACCACTAT 59.471 55.000 0.00 0.00 0.00 2.12
555 556 1.526575 GGACCACCGAACGACCACTA 61.527 60.000 0.00 0.00 0.00 2.74
557 558 2.356673 GGACCACCGAACGACCAC 60.357 66.667 0.00 0.00 0.00 4.16
590 591 9.083080 ACAAAGCACTTCAAACATAGTAAAAAC 57.917 29.630 0.00 0.00 0.00 2.43
597 598 7.321271 CGAAAGTACAAAGCACTTCAAACATAG 59.679 37.037 0.00 0.00 35.19 2.23
599 600 5.971202 CGAAAGTACAAAGCACTTCAAACAT 59.029 36.000 0.00 0.00 35.19 2.71
607 608 3.188159 TCACCGAAAGTACAAAGCACT 57.812 42.857 0.00 0.00 0.00 4.40
631 632 9.481340 CTCCAAAAGAATCATATCTATCACGAA 57.519 33.333 0.00 0.00 0.00 3.85
633 634 9.481340 TTCTCCAAAAGAATCATATCTATCACG 57.519 33.333 0.00 0.00 39.12 4.35
666 667 4.637534 ACGCTCGAGGTGTCTATAAAGTTA 59.362 41.667 15.58 0.00 32.61 2.24
673 674 2.211806 GTCTACGCTCGAGGTGTCTAT 58.788 52.381 15.58 0.00 39.59 1.98
680 681 1.025812 AGGATTGTCTACGCTCGAGG 58.974 55.000 15.58 6.97 0.00 4.63
717 718 1.374758 GTCACCTCCAGTCTTGGCG 60.375 63.158 0.00 0.00 44.63 5.69
738 739 3.691342 TCTTGCGTCCCCGTCAGG 61.691 66.667 0.00 0.00 36.15 3.86
739 740 2.432628 GTCTTGCGTCCCCGTCAG 60.433 66.667 0.00 0.00 36.15 3.51
806 807 4.681978 AACTGTCGGCCTGCGTCC 62.682 66.667 0.00 0.00 0.00 4.79
807 808 2.665185 AAACTGTCGGCCTGCGTC 60.665 61.111 0.00 0.00 0.00 5.19
835 844 2.124236 ACTAGCGACGAGGGAGGG 60.124 66.667 0.00 0.00 0.00 4.30
836 845 2.535788 CGACTAGCGACGAGGGAGG 61.536 68.421 0.00 0.00 44.57 4.30
837 846 1.367599 AACGACTAGCGACGAGGGAG 61.368 60.000 12.46 0.00 44.57 4.30
838 847 1.376424 AACGACTAGCGACGAGGGA 60.376 57.895 12.46 0.00 44.57 4.20
935 944 4.971125 GGCTGGTAGATCCGCGCC 62.971 72.222 0.00 0.00 44.12 6.53
1107 1127 4.584327 TTCACGCATAGAGCTAGCATAA 57.416 40.909 18.83 0.96 42.61 1.90
1111 1131 2.064762 CCATTCACGCATAGAGCTAGC 58.935 52.381 6.62 6.62 42.61 3.42
1134 1154 1.301558 GAGATGGGCGCCAGATGAG 60.302 63.158 30.85 0.00 36.75 2.90
1139 1159 2.016393 TAACTCGAGATGGGCGCCAG 62.016 60.000 30.85 17.61 36.75 4.85
1144 1164 3.067833 GCCTAATTAACTCGAGATGGGC 58.932 50.000 21.68 16.88 0.00 5.36
1181 1201 2.612212 GGTAACGCATACAATCAGTGGG 59.388 50.000 0.00 0.00 36.14 4.61
1182 1202 2.612212 GGGTAACGCATACAATCAGTGG 59.388 50.000 0.00 0.00 36.14 4.00
1206 1226 2.032860 CTCCATCCCGCCTCATTCGT 62.033 60.000 0.00 0.00 0.00 3.85
1215 1235 0.108585 TTAATCCTGCTCCATCCCGC 59.891 55.000 0.00 0.00 0.00 6.13
1216 1236 2.867109 ATTAATCCTGCTCCATCCCG 57.133 50.000 0.00 0.00 0.00 5.14
1217 1237 5.006386 CACTAATTAATCCTGCTCCATCCC 58.994 45.833 0.00 0.00 0.00 3.85
1218 1238 5.006386 CCACTAATTAATCCTGCTCCATCC 58.994 45.833 0.00 0.00 0.00 3.51
1219 1239 5.869579 TCCACTAATTAATCCTGCTCCATC 58.130 41.667 0.00 0.00 0.00 3.51
1220 1240 5.912149 TCCACTAATTAATCCTGCTCCAT 57.088 39.130 0.00 0.00 0.00 3.41
1221 1241 5.369404 TGATCCACTAATTAATCCTGCTCCA 59.631 40.000 0.00 0.00 0.00 3.86
1222 1242 5.869579 TGATCCACTAATTAATCCTGCTCC 58.130 41.667 0.00 0.00 0.00 4.70
1223 1243 5.936956 CCTGATCCACTAATTAATCCTGCTC 59.063 44.000 0.00 0.00 0.00 4.26
1224 1244 5.747248 GCCTGATCCACTAATTAATCCTGCT 60.747 44.000 0.00 0.00 0.00 4.24
1258 1288 0.250234 TCTACGCATCTGCCTTTGCT 59.750 50.000 0.00 0.00 38.71 3.91
1259 1289 1.003116 CATCTACGCATCTGCCTTTGC 60.003 52.381 0.00 0.00 37.91 3.68
1260 1290 2.031314 CACATCTACGCATCTGCCTTTG 59.969 50.000 0.00 0.00 37.91 2.77
1264 1294 0.933097 CACACATCTACGCATCTGCC 59.067 55.000 0.00 0.00 37.91 4.85
1283 1313 0.449388 CCTGAAGGCATTGCTCGAAC 59.551 55.000 8.82 0.00 0.00 3.95
1285 1315 0.674581 CACCTGAAGGCATTGCTCGA 60.675 55.000 8.82 0.00 39.32 4.04
1286 1316 1.798735 CACCTGAAGGCATTGCTCG 59.201 57.895 8.82 0.00 39.32 5.03
1404 1434 0.107848 CGGCTAAGGTCAACGGGATT 60.108 55.000 0.00 0.00 0.00 3.01
1405 1435 1.262640 ACGGCTAAGGTCAACGGGAT 61.263 55.000 0.00 0.00 0.00 3.85
1406 1436 1.909781 ACGGCTAAGGTCAACGGGA 60.910 57.895 0.00 0.00 0.00 5.14
1407 1437 1.740296 CACGGCTAAGGTCAACGGG 60.740 63.158 0.00 0.00 0.00 5.28
1408 1438 1.005394 ACACGGCTAAGGTCAACGG 60.005 57.895 0.00 0.00 0.00 4.44
1409 1439 1.289109 CCACACGGCTAAGGTCAACG 61.289 60.000 0.00 0.00 0.00 4.10
1410 1440 0.250166 ACCACACGGCTAAGGTCAAC 60.250 55.000 0.00 0.00 34.57 3.18
1411 1441 2.138595 ACCACACGGCTAAGGTCAA 58.861 52.632 0.00 0.00 34.57 3.18
1432 1462 2.469516 CCGGCCATCGTTAGCAACC 61.470 63.158 2.24 0.00 37.11 3.77
1433 1463 1.303091 AACCGGCCATCGTTAGCAAC 61.303 55.000 0.00 0.00 37.11 4.17
1434 1464 1.003112 AACCGGCCATCGTTAGCAA 60.003 52.632 0.00 0.00 37.11 3.91
1435 1465 1.743623 CAACCGGCCATCGTTAGCA 60.744 57.895 0.00 0.00 37.11 3.49
1436 1466 3.098555 CAACCGGCCATCGTTAGC 58.901 61.111 0.00 0.00 37.11 3.09
1437 1467 3.098555 GCAACCGGCCATCGTTAG 58.901 61.111 0.00 0.00 37.11 2.34
1447 1477 2.463589 TTAGTGGAGCAGGCAACCGG 62.464 60.000 0.00 0.00 37.17 5.28
1448 1478 1.003839 TTAGTGGAGCAGGCAACCG 60.004 57.895 0.00 0.00 37.17 4.44
1497 1527 3.054503 GCAGCCTCACAGCCACAG 61.055 66.667 0.00 0.00 0.00 3.66
1498 1528 4.994471 CGCAGCCTCACAGCCACA 62.994 66.667 0.00 0.00 0.00 4.17
1574 1604 0.818296 CTGAGAACCGGACCGAGAAT 59.182 55.000 17.49 0.00 0.00 2.40
1577 1607 0.382515 GATCTGAGAACCGGACCGAG 59.617 60.000 17.49 8.21 31.94 4.63
1613 1643 8.110860 TGGAAGAACAAGAATATTCCTGTTTC 57.889 34.615 25.82 20.86 40.77 2.78
1614 1644 8.655935 ATGGAAGAACAAGAATATTCCTGTTT 57.344 30.769 25.82 15.56 40.77 2.83
1615 1645 8.526147 CAATGGAAGAACAAGAATATTCCTGTT 58.474 33.333 25.52 25.52 42.71 3.16
1616 1646 7.671398 ACAATGGAAGAACAAGAATATTCCTGT 59.329 33.333 12.97 12.97 40.11 4.00
1617 1647 8.059798 ACAATGGAAGAACAAGAATATTCCTG 57.940 34.615 11.92 11.82 40.11 3.86
1618 1648 7.890127 TGACAATGGAAGAACAAGAATATTCCT 59.110 33.333 11.92 0.00 40.11 3.36
1619 1649 7.970614 GTGACAATGGAAGAACAAGAATATTCC 59.029 37.037 11.92 0.00 39.90 3.01
1620 1650 7.970614 GGTGACAATGGAAGAACAAGAATATTC 59.029 37.037 7.41 7.41 0.00 1.75
1621 1651 7.093771 GGGTGACAATGGAAGAACAAGAATATT 60.094 37.037 0.00 0.00 0.00 1.28
1722 1756 2.325484 TGCTTAAGGTGGTCTCACAGA 58.675 47.619 4.29 0.00 45.32 3.41
1731 1765 1.667236 TCGCATGATGCTTAAGGTGG 58.333 50.000 16.17 0.00 42.25 4.61
1735 1769 1.136141 GCCGATCGCATGATGCTTAAG 60.136 52.381 16.17 0.00 42.25 1.85
1785 1819 8.112183 AGCTTAGGACCTAGTACTAGTTAACAA 58.888 37.037 24.84 13.60 29.95 2.83
1810 1847 1.352083 TGTCTCCCCTGGAACTGAAG 58.648 55.000 0.00 0.00 0.00 3.02
1830 1867 9.328845 ACTACTAGTTGGTTTAAACGAATGAAA 57.671 29.630 17.22 4.84 35.13 2.69
1866 1903 6.486657 TGCAAAACTGCAAAGTAGAGTATCTT 59.513 34.615 0.00 0.00 42.54 2.40
1868 1905 6.241207 TGCAAAACTGCAAAGTAGAGTATC 57.759 37.500 0.00 0.00 42.40 2.24
1906 1943 2.076863 GAAGGGTGTGATGAGGAAACG 58.923 52.381 0.00 0.00 0.00 3.60
1939 1976 8.462811 TGTACGCATAATATTTGGTGAATTTGT 58.537 29.630 0.00 0.00 0.00 2.83
1968 2050 4.696455 AGTTCCTGTTTTTCATGCTTTGG 58.304 39.130 0.00 0.00 0.00 3.28
1969 2051 5.594926 AGAGTTCCTGTTTTTCATGCTTTG 58.405 37.500 0.00 0.00 0.00 2.77
1970 2052 5.859205 AGAGTTCCTGTTTTTCATGCTTT 57.141 34.783 0.00 0.00 0.00 3.51
2053 2135 7.974675 ACGGTTGTAATGAATGAATACTGAAG 58.025 34.615 0.00 0.00 0.00 3.02
2116 2198 6.183360 TGTCTCACATGTGCAAAGTATGTTTT 60.183 34.615 21.38 0.00 33.06 2.43
2126 2208 0.473755 AGGGTGTCTCACATGTGCAA 59.526 50.000 21.38 8.39 35.86 4.08
2265 2347 2.501261 CCTATGGATGCCACATGACAG 58.499 52.381 0.00 0.00 35.80 3.51
2283 2365 7.957929 TTAGGTAAACATTCCATATACCCCT 57.042 36.000 0.00 0.00 37.35 4.79
2360 2442 3.459598 CCAGGTTGATGAGGATAAGGGAA 59.540 47.826 0.00 0.00 0.00 3.97
2750 2832 2.846206 ACCACCTATTGAGCCAATGAGA 59.154 45.455 9.79 0.00 35.54 3.27
2792 2874 1.559682 TCCCTTCCAGCCATAACTGTC 59.440 52.381 0.00 0.00 35.83 3.51
2927 3009 2.899977 GTGTCGTCGTCACCAAAATTC 58.100 47.619 10.95 0.00 0.00 2.17
3009 3091 8.712363 GCTAATTATGCTTTCACGATTCATCTA 58.288 33.333 0.00 0.00 0.00 1.98
3011 3093 7.355017 TGCTAATTATGCTTTCACGATTCATC 58.645 34.615 0.00 0.00 0.00 2.92
3015 3097 7.031226 ACATGCTAATTATGCTTTCACGATT 57.969 32.000 0.00 0.00 0.00 3.34
3019 3101 9.046296 ACTACTACATGCTAATTATGCTTTCAC 57.954 33.333 0.00 0.00 0.00 3.18
3041 3206 6.477033 CACTTGATCACCAGCAATACTACTAC 59.523 42.308 0.00 0.00 0.00 2.73
3042 3207 6.573434 CACTTGATCACCAGCAATACTACTA 58.427 40.000 0.00 0.00 0.00 1.82
3043 3208 5.423015 CACTTGATCACCAGCAATACTACT 58.577 41.667 0.00 0.00 0.00 2.57
3044 3209 4.034510 GCACTTGATCACCAGCAATACTAC 59.965 45.833 0.00 0.00 0.00 2.73
3053 3218 0.607217 TGCCAGCACTTGATCACCAG 60.607 55.000 0.00 0.00 0.00 4.00
3097 3262 4.748102 AGAAAAGTTGCAAGCATGATGTTG 59.252 37.500 0.00 0.00 0.00 3.33
3103 3268 4.986034 TGAATGAGAAAAGTTGCAAGCATG 59.014 37.500 0.00 0.00 0.00 4.06
3131 3296 6.707440 TTACAAAATTCCAACTCAGCTGAA 57.293 33.333 18.85 1.32 0.00 3.02
3132 3297 6.899393 ATTACAAAATTCCAACTCAGCTGA 57.101 33.333 17.19 17.19 0.00 4.26
3153 3336 9.252962 CACATCAGCTTAGAAAAGAAAACAATT 57.747 29.630 0.00 0.00 34.37 2.32
3154 3337 8.416329 ACACATCAGCTTAGAAAAGAAAACAAT 58.584 29.630 0.00 0.00 34.37 2.71
3155 3338 7.771183 ACACATCAGCTTAGAAAAGAAAACAA 58.229 30.769 0.00 0.00 34.37 2.83
3156 3339 7.333528 ACACATCAGCTTAGAAAAGAAAACA 57.666 32.000 0.00 0.00 34.37 2.83
3159 3342 7.995289 TCAAACACATCAGCTTAGAAAAGAAA 58.005 30.769 0.00 0.00 34.37 2.52
3161 3344 7.750229 ATCAAACACATCAGCTTAGAAAAGA 57.250 32.000 0.00 0.00 34.37 2.52
3204 3408 8.306313 TCAAGGACAGATACACATACTGTTAT 57.694 34.615 0.00 0.00 43.49 1.89
3213 3417 4.558226 ATGCTTCAAGGACAGATACACA 57.442 40.909 0.00 0.00 0.00 3.72
3265 3469 2.713877 ACACTGTTACCAACCAAACGT 58.286 42.857 0.00 0.00 0.00 3.99
3467 3672 7.750903 GCAAGGAGTTATTGTCAGTTCAAATAC 59.249 37.037 0.00 0.00 0.00 1.89
3592 3820 5.048083 TGCAATTACTCCACCAAGAAATGAC 60.048 40.000 0.00 0.00 0.00 3.06
4021 4249 2.023673 CAGCACAGACCAAAAGGAACA 58.976 47.619 0.00 0.00 0.00 3.18
4084 4312 2.357034 GCCAACCTCGCGTTCTCA 60.357 61.111 5.77 0.00 29.93 3.27
4108 4336 1.583556 TTAGCTCCAGATCCTTGGCA 58.416 50.000 0.00 0.00 38.16 4.92
4150 4378 2.455674 ACGAACACTGCAGCTGATAA 57.544 45.000 20.43 0.32 0.00 1.75
4151 4379 2.455674 AACGAACACTGCAGCTGATA 57.544 45.000 20.43 4.20 0.00 2.15
4157 4396 1.464023 CCGCATTAACGAACACTGCAG 60.464 52.381 13.48 13.48 34.06 4.41
4191 4430 1.001181 CTGCACCATTTCAACCCCAAG 59.999 52.381 0.00 0.00 0.00 3.61
4271 4512 7.660208 AGGTGTACTCGTGTATTTCTTTTCATT 59.340 33.333 0.02 0.00 0.00 2.57
4287 4532 3.440522 TCATCTGTCTGAAGGTGTACTCG 59.559 47.826 0.00 0.00 29.89 4.18
4315 4561 2.170397 TCACCGACTCTACCCGTGTATA 59.830 50.000 0.00 0.00 0.00 1.47
4466 4721 4.569564 GCCATCTTCATCCAAAAATTCAGC 59.430 41.667 0.00 0.00 0.00 4.26
4518 4773 1.755959 TGCACATGCTGAACCAAGTTT 59.244 42.857 5.31 0.00 42.66 2.66
4519 4774 1.401761 TGCACATGCTGAACCAAGTT 58.598 45.000 5.31 0.00 42.66 2.66
4520 4775 1.067516 GTTGCACATGCTGAACCAAGT 59.932 47.619 5.31 0.00 42.66 3.16
4521 4776 1.067364 TGTTGCACATGCTGAACCAAG 59.933 47.619 5.31 0.00 42.66 3.61
4523 4778 1.330234 ATGTTGCACATGCTGAACCA 58.670 45.000 5.31 0.00 37.45 3.67
4524 4779 2.288334 TGAATGTTGCACATGCTGAACC 60.288 45.455 5.31 0.00 37.97 3.62
4526 4781 2.624364 AGTGAATGTTGCACATGCTGAA 59.376 40.909 5.31 0.00 37.97 3.02
4527 4782 2.232399 AGTGAATGTTGCACATGCTGA 58.768 42.857 5.31 0.00 37.97 4.26
4528 4783 2.717580 AGTGAATGTTGCACATGCTG 57.282 45.000 5.31 0.00 37.97 4.41
4529 4784 3.068448 TCAAAGTGAATGTTGCACATGCT 59.932 39.130 5.31 3.57 37.97 3.79
4530 4785 3.182972 GTCAAAGTGAATGTTGCACATGC 59.817 43.478 0.00 0.00 37.97 4.06
4531 4786 3.737266 GGTCAAAGTGAATGTTGCACATG 59.263 43.478 0.00 0.00 37.97 3.21
4532 4787 3.384146 TGGTCAAAGTGAATGTTGCACAT 59.616 39.130 0.00 0.00 41.31 3.21
4533 4788 2.757314 TGGTCAAAGTGAATGTTGCACA 59.243 40.909 0.00 0.00 38.70 4.57
4534 4789 3.435105 TGGTCAAAGTGAATGTTGCAC 57.565 42.857 0.00 0.00 36.53 4.57
4537 4792 6.534436 TGTCAAATTGGTCAAAGTGAATGTTG 59.466 34.615 0.00 0.00 0.00 3.33
4548 4803 7.815840 TCAATTAGAGTGTCAAATTGGTCAA 57.184 32.000 7.52 0.00 39.79 3.18
4558 4813 9.624697 GCAAATACAAATTCAATTAGAGTGTCA 57.375 29.630 0.00 0.00 0.00 3.58
4559 4814 9.076596 GGCAAATACAAATTCAATTAGAGTGTC 57.923 33.333 0.00 0.00 0.00 3.67
4560 4815 8.806146 AGGCAAATACAAATTCAATTAGAGTGT 58.194 29.630 0.00 0.00 0.00 3.55
4561 4816 9.294030 GAGGCAAATACAAATTCAATTAGAGTG 57.706 33.333 0.00 0.00 0.00 3.51
4562 4817 8.470002 GGAGGCAAATACAAATTCAATTAGAGT 58.530 33.333 0.00 0.00 0.00 3.24
4563 4818 8.689972 AGGAGGCAAATACAAATTCAATTAGAG 58.310 33.333 0.00 0.00 0.00 2.43
4564 4819 8.469200 CAGGAGGCAAATACAAATTCAATTAGA 58.531 33.333 0.00 0.00 0.00 2.10
4565 4820 8.253113 ACAGGAGGCAAATACAAATTCAATTAG 58.747 33.333 0.00 0.00 0.00 1.73
4569 4824 7.363705 CCATACAGGAGGCAAATACAAATTCAA 60.364 37.037 0.00 0.00 41.22 2.69
4572 4827 5.957774 ACCATACAGGAGGCAAATACAAATT 59.042 36.000 0.00 0.00 41.22 1.82
4621 4884 3.484407 ACTCAAAAGATGCAGCTTCTGT 58.516 40.909 19.00 11.23 33.43 3.41
4645 4937 1.601914 GGATGCGTGTTTTGGTTGTCC 60.602 52.381 0.00 0.00 0.00 4.02
4695 4987 4.219115 TCCTAATCTGGTGTTTTTGGCAA 58.781 39.130 0.00 0.00 0.00 4.52
4697 4989 4.864704 TTCCTAATCTGGTGTTTTTGGC 57.135 40.909 0.00 0.00 0.00 4.52
4756 5220 9.979578 TTGCTCATTGTTTACAAGATTTATTGT 57.020 25.926 1.50 0.00 45.19 2.71
4761 5225 8.611757 GGTTTTTGCTCATTGTTTACAAGATTT 58.388 29.630 1.50 0.00 39.47 2.17
4762 5226 7.042791 CGGTTTTTGCTCATTGTTTACAAGATT 60.043 33.333 1.50 0.00 39.47 2.40
4763 5227 6.420604 CGGTTTTTGCTCATTGTTTACAAGAT 59.579 34.615 1.50 0.00 39.47 2.40
4764 5228 5.746245 CGGTTTTTGCTCATTGTTTACAAGA 59.254 36.000 1.50 0.00 39.47 3.02
4765 5229 5.556194 GCGGTTTTTGCTCATTGTTTACAAG 60.556 40.000 1.50 0.00 39.47 3.16
4766 5230 4.268884 GCGGTTTTTGCTCATTGTTTACAA 59.731 37.500 0.00 0.00 40.51 2.41
4767 5231 3.799420 GCGGTTTTTGCTCATTGTTTACA 59.201 39.130 0.00 0.00 0.00 2.41
4768 5232 4.048504 AGCGGTTTTTGCTCATTGTTTAC 58.951 39.130 0.00 0.00 38.62 2.01
4769 5233 4.047822 CAGCGGTTTTTGCTCATTGTTTA 58.952 39.130 0.00 0.00 41.72 2.01
4770 5234 2.865551 CAGCGGTTTTTGCTCATTGTTT 59.134 40.909 0.00 0.00 41.72 2.83
4771 5235 2.100584 TCAGCGGTTTTTGCTCATTGTT 59.899 40.909 0.00 0.00 41.72 2.83
4772 5236 1.680735 TCAGCGGTTTTTGCTCATTGT 59.319 42.857 0.00 0.00 41.72 2.71
4773 5237 2.420628 TCAGCGGTTTTTGCTCATTG 57.579 45.000 0.00 0.00 41.72 2.82
4774 5238 3.005684 TGAATCAGCGGTTTTTGCTCATT 59.994 39.130 0.00 0.00 41.72 2.57
4775 5239 2.557924 TGAATCAGCGGTTTTTGCTCAT 59.442 40.909 0.00 0.00 41.72 2.90
4776 5240 1.952990 TGAATCAGCGGTTTTTGCTCA 59.047 42.857 0.00 0.00 41.72 4.26
4777 5241 2.704725 TGAATCAGCGGTTTTTGCTC 57.295 45.000 0.00 0.00 41.72 4.26
4778 5242 3.123050 GTTTGAATCAGCGGTTTTTGCT 58.877 40.909 0.00 0.00 45.31 3.91
4779 5243 3.123050 AGTTTGAATCAGCGGTTTTTGC 58.877 40.909 0.00 0.00 0.00 3.68
4780 5244 4.566360 ACAAGTTTGAATCAGCGGTTTTTG 59.434 37.500 0.00 0.00 0.00 2.44
4781 5245 4.754322 ACAAGTTTGAATCAGCGGTTTTT 58.246 34.783 0.00 0.00 0.00 1.94
4782 5246 4.385358 ACAAGTTTGAATCAGCGGTTTT 57.615 36.364 0.00 0.00 0.00 2.43
4783 5247 5.508200 TTACAAGTTTGAATCAGCGGTTT 57.492 34.783 0.00 0.00 0.00 3.27
4784 5248 5.163602 TGTTTACAAGTTTGAATCAGCGGTT 60.164 36.000 0.00 0.00 0.00 4.44
4785 5249 4.336993 TGTTTACAAGTTTGAATCAGCGGT 59.663 37.500 0.00 0.00 0.00 5.68
4786 5250 4.854399 TGTTTACAAGTTTGAATCAGCGG 58.146 39.130 0.00 0.00 0.00 5.52
4787 5251 6.614162 GCATTGTTTACAAGTTTGAATCAGCG 60.614 38.462 1.50 0.00 39.47 5.18
4788 5252 6.200665 TGCATTGTTTACAAGTTTGAATCAGC 59.799 34.615 1.50 0.00 39.47 4.26
4789 5253 7.222417 TGTGCATTGTTTACAAGTTTGAATCAG 59.778 33.333 0.00 0.00 39.47 2.90
4797 5261 5.323371 ACTGTGTGCATTGTTTACAAGTT 57.677 34.783 0.00 0.00 39.47 2.66
4815 5279 0.106708 TCAAGCTCTTCGCCAACTGT 59.893 50.000 0.00 0.00 40.39 3.55
4821 5285 1.375268 AGTGCTCAAGCTCTTCGCC 60.375 57.895 3.32 0.00 41.50 5.54
4829 5293 2.146342 TGCAAGTAGAAGTGCTCAAGC 58.854 47.619 0.00 0.00 41.48 4.01
4832 5296 3.751479 TCTTGCAAGTAGAAGTGCTCA 57.249 42.857 25.19 0.00 41.48 4.26
4840 5304 5.228945 AGGTTAAGCTTCTTGCAAGTAGA 57.771 39.130 30.50 15.85 45.94 2.59
4841 5305 5.932303 TGTAGGTTAAGCTTCTTGCAAGTAG 59.068 40.000 24.29 24.29 45.94 2.57
4853 5317 7.201670 GGCGTATAAACAATTGTAGGTTAAGCT 60.202 37.037 12.39 12.54 0.00 3.74
4861 5511 9.828852 TTGTTTTAGGCGTATAAACAATTGTAG 57.171 29.630 21.81 1.11 43.13 2.74
4867 5517 9.828852 CTACATTTGTTTTAGGCGTATAAACAA 57.171 29.630 21.81 21.81 45.05 2.83
4874 5524 5.065474 GCATCCTACATTTGTTTTAGGCGTA 59.935 40.000 0.00 0.00 0.00 4.42
4875 5525 4.142469 GCATCCTACATTTGTTTTAGGCGT 60.142 41.667 0.00 0.00 0.00 5.68
4905 5555 6.247676 TCATGGACTGATTCTCCATTTGAAA 58.752 36.000 5.01 0.00 44.81 2.69
4923 5575 4.018506 TGCCTCCAAGATTTAGTTCATGGA 60.019 41.667 0.00 0.00 40.27 3.41
4941 5593 1.135721 GATTTTGGTCCTGCATGCCTC 59.864 52.381 16.68 2.63 0.00 4.70
4977 5669 9.685828 GCATGTTTTAAAGTTGTCCAGTTTATA 57.314 29.630 0.00 0.00 31.50 0.98
5003 5695 3.126514 CAGAGTTACAGAATGCAGCAAGG 59.873 47.826 0.00 0.00 42.53 3.61
5004 5696 3.425892 GCAGAGTTACAGAATGCAGCAAG 60.426 47.826 0.00 0.00 42.53 4.01
5020 5712 3.857157 TTGTTAGTTGGGAAGCAGAGT 57.143 42.857 0.00 0.00 0.00 3.24
5021 5713 3.441572 CCATTGTTAGTTGGGAAGCAGAG 59.558 47.826 0.00 0.00 0.00 3.35
5023 5715 3.157087 ACCATTGTTAGTTGGGAAGCAG 58.843 45.455 0.00 0.00 37.32 4.24
5024 5716 3.237268 ACCATTGTTAGTTGGGAAGCA 57.763 42.857 0.00 0.00 37.32 3.91
5025 5717 5.715434 TTAACCATTGTTAGTTGGGAAGC 57.285 39.130 0.00 0.00 38.17 3.86
5089 5781 6.531503 TTCTACAGTTCATCTACCTGAAGG 57.468 41.667 0.00 0.00 35.88 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.