Multiple sequence alignment - TraesCS5A01G460400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G460400 chr5A 100.000 6382 0 0 1 6382 640734265 640727884 0.000000e+00 11786.0
1 TraesCS5A01G460400 chr5D 95.740 5915 164 35 1 5864 512544091 512538214 0.000000e+00 9446.0
2 TraesCS5A01G460400 chr5D 86.869 99 11 2 6045 6143 34074112 34074208 6.760000e-20 110.0
3 TraesCS5A01G460400 chr5B 94.063 5912 261 48 1 5864 643471293 643465424 0.000000e+00 8890.0
4 TraesCS5A01G460400 chr2D 89.583 96 8 2 6042 6137 643235914 643235821 3.130000e-23 121.0
5 TraesCS5A01G460400 chr2D 87.255 102 11 2 6041 6142 117843131 117843032 1.450000e-21 115.0
6 TraesCS5A01G460400 chr1B 92.857 84 4 2 6045 6128 374840495 374840576 3.130000e-23 121.0
7 TraesCS5A01G460400 chr7B 89.362 94 8 2 6044 6137 639796195 639796286 4.040000e-22 117.0
8 TraesCS5A01G460400 chr7B 89.247 93 8 2 6044 6136 428966839 428966929 1.450000e-21 115.0
9 TraesCS5A01G460400 chr7A 90.805 87 6 2 6046 6132 686371401 686371317 1.450000e-21 115.0
10 TraesCS5A01G460400 chr6B 89.247 93 8 2 6044 6135 642350232 642350323 1.450000e-21 115.0
11 TraesCS5A01G460400 chr2A 90.000 90 7 2 6048 6137 361381703 361381616 1.450000e-21 115.0
12 TraesCS5A01G460400 chr4A 86.207 87 10 2 5951 6037 580297855 580297771 6.810000e-15 93.5
13 TraesCS5A01G460400 chr1D 81.000 100 15 2 5944 6043 303005664 303005569 6.860000e-10 76.8
14 TraesCS5A01G460400 chr1D 94.595 37 1 1 5950 5986 233902728 233902763 8.940000e-04 56.5
15 TraesCS5A01G460400 chr4B 97.561 41 1 0 5944 5984 96274742 96274782 3.190000e-08 71.3
16 TraesCS5A01G460400 chr4B 100.000 31 0 0 5947 5977 13392647 13392677 2.490000e-04 58.4
17 TraesCS5A01G460400 chr3A 93.182 44 2 1 5942 5984 25502300 25502257 5.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G460400 chr5A 640727884 640734265 6381 True 11786 11786 100.000 1 6382 1 chr5A.!!$R1 6381
1 TraesCS5A01G460400 chr5D 512538214 512544091 5877 True 9446 9446 95.740 1 5864 1 chr5D.!!$R1 5863
2 TraesCS5A01G460400 chr5B 643465424 643471293 5869 True 8890 8890 94.063 1 5864 1 chr5B.!!$R1 5863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 508 0.251832 TCCACTTCCTCTTCTCGCCT 60.252 55.000 0.00 0.00 0.00 5.52 F
1332 1348 1.077716 GTACGGCTGAATGGGGCTT 60.078 57.895 0.00 0.00 0.00 4.35 F
1815 1838 1.342076 ACACCGGAAGAGCTCCATCTA 60.342 52.381 9.46 0.00 45.74 1.98 F
1970 1993 1.414158 TAGCTGGATGTCCTAGTGGC 58.586 55.000 0.00 0.00 36.82 5.01 F
2453 2480 4.143194 GCTTGATGCTGCAGTACATATG 57.857 45.455 16.64 0.00 38.95 1.78 F
2495 2522 4.336993 TGTAAATATGATTTCGTGGGGCAC 59.663 41.667 0.00 0.00 0.00 5.01 F
3042 3071 4.948341 AATGGCACGGTATACAGATACA 57.052 40.909 10.15 5.57 39.91 2.29 F
4436 4484 0.744414 TTGCCCAGTGCGCTAATCTC 60.744 55.000 9.73 0.00 45.60 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 2480 1.474077 CAGCCAACAGAAATGCCCTAC 59.526 52.381 0.0 0.0 0.00 3.18 R
3291 3333 2.616524 ACCAACTCCTACTGGCACTTA 58.383 47.619 0.0 0.0 36.03 2.24 R
3542 3586 3.632604 TCAACAAACGGATAGGCACAAAA 59.367 39.130 0.0 0.0 0.00 2.44 R
3905 3949 5.473162 TGTGTGGATAAACCTTGACTTGATG 59.527 40.000 0.0 0.0 39.86 3.07 R
4088 4132 1.150536 GGCACACCAAGGACTTCCA 59.849 57.895 0.0 0.0 35.33 3.53 R
4436 4484 2.502213 TAATACATGCCGAGTCACCG 57.498 50.000 0.0 0.0 0.00 4.94 R
4526 4574 4.211125 TGCAAGTTTCCCACATAACAAGA 58.789 39.130 0.0 0.0 0.00 3.02 R
5746 5831 0.035630 GCAAGATGGAGGACTGTGCT 60.036 55.000 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 7.860918 ATGATACATTGCATCTCATATGGTC 57.139 36.000 2.13 0.00 0.00 4.02
131 133 3.610911 GGGCATGAGTACAACTAGCTTT 58.389 45.455 0.00 0.00 0.00 3.51
213 215 6.712095 TGTGAAGAGCATGGGATATTATGTTC 59.288 38.462 0.00 0.00 35.54 3.18
423 425 2.504244 CGAAGCGAGGACGTGGAC 60.504 66.667 0.00 0.00 41.98 4.02
506 508 0.251832 TCCACTTCCTCTTCTCGCCT 60.252 55.000 0.00 0.00 0.00 5.52
596 598 2.973899 GACCTGCTCTGCTCCGAA 59.026 61.111 0.00 0.00 0.00 4.30
655 657 1.304713 CATCCAAAGCCCAGCACCT 60.305 57.895 0.00 0.00 0.00 4.00
704 706 4.141528 TGCCTTTTCCAATGGTGTGATTTT 60.142 37.500 0.00 0.00 0.00 1.82
728 730 2.364324 TCACTCTTGTCCGTTTAGCTGT 59.636 45.455 0.00 0.00 0.00 4.40
750 752 3.659786 AGATGCACTTGTGCGTAACTAA 58.340 40.909 18.80 1.70 37.69 2.24
818 820 6.596309 TGTAGTTCACACAGATCTGATTCT 57.404 37.500 29.27 17.52 30.04 2.40
819 821 6.393171 TGTAGTTCACACAGATCTGATTCTG 58.607 40.000 29.27 18.23 46.94 3.02
910 923 2.867287 TTGTCTGGTGCAAACATGTG 57.133 45.000 0.00 0.00 0.00 3.21
979 992 3.913763 CCACAACGTTTAGCATGATGTTG 59.086 43.478 13.05 13.05 44.40 3.33
994 1007 2.435372 TGTTGCTGGAGACCAAAGTT 57.565 45.000 0.00 0.00 30.80 2.66
1092 1105 6.130298 TCAAGTTGTATCAGTGTTGGTTTG 57.870 37.500 2.11 0.00 0.00 2.93
1094 1107 3.003275 AGTTGTATCAGTGTTGGTTTGCG 59.997 43.478 0.00 0.00 0.00 4.85
1131 1144 1.192803 TGGCTGGCATGCAAATTCCA 61.193 50.000 21.36 15.10 34.04 3.53
1264 1280 2.948979 TCTACAAACCAAACAGCCACAG 59.051 45.455 0.00 0.00 0.00 3.66
1292 1308 5.649557 TCAATATTTTGGTCATGCCTTTCG 58.350 37.500 7.54 0.00 38.35 3.46
1307 1323 2.794350 CCTTTCGTTTGTTCATGCCAAC 59.206 45.455 0.00 0.00 0.00 3.77
1332 1348 1.077716 GTACGGCTGAATGGGGCTT 60.078 57.895 0.00 0.00 0.00 4.35
1382 1398 2.973694 TTAGAGCGGGTGTAATGGAC 57.026 50.000 0.00 0.00 0.00 4.02
1628 1644 3.459232 TCTCATCCTATTGAAGGTGCG 57.541 47.619 0.00 0.00 46.62 5.34
1629 1645 2.766263 TCTCATCCTATTGAAGGTGCGT 59.234 45.455 0.00 0.00 46.62 5.24
1671 1688 8.449251 TTTCATCATTGTATTATACAGCAGCA 57.551 30.769 5.17 0.00 40.24 4.41
1815 1838 1.342076 ACACCGGAAGAGCTCCATCTA 60.342 52.381 9.46 0.00 45.74 1.98
1970 1993 1.414158 TAGCTGGATGTCCTAGTGGC 58.586 55.000 0.00 0.00 36.82 5.01
2244 2267 7.505585 TCACATACTTTCCAATCTTTTTCACCT 59.494 33.333 0.00 0.00 0.00 4.00
2245 2268 8.143835 CACATACTTTCCAATCTTTTTCACCTT 58.856 33.333 0.00 0.00 0.00 3.50
2246 2269 8.360390 ACATACTTTCCAATCTTTTTCACCTTC 58.640 33.333 0.00 0.00 0.00 3.46
2247 2270 6.790232 ACTTTCCAATCTTTTTCACCTTCA 57.210 33.333 0.00 0.00 0.00 3.02
2276 2300 5.300752 CATGCTACTGTATTGAACCCTAGG 58.699 45.833 0.06 0.06 0.00 3.02
2424 2451 8.565896 TTTCTGTTGTCAGTTATGATGCTATT 57.434 30.769 0.00 0.00 41.91 1.73
2425 2452 7.776933 TCTGTTGTCAGTTATGATGCTATTC 57.223 36.000 0.00 0.00 41.91 1.75
2426 2453 7.559486 TCTGTTGTCAGTTATGATGCTATTCT 58.441 34.615 0.00 0.00 41.91 2.40
2453 2480 4.143194 GCTTGATGCTGCAGTACATATG 57.857 45.455 16.64 0.00 38.95 1.78
2495 2522 4.336993 TGTAAATATGATTTCGTGGGGCAC 59.663 41.667 0.00 0.00 0.00 5.01
2627 2655 6.816140 GTGAATATAGCTAGCCTTCTTCCATC 59.184 42.308 12.13 0.00 0.00 3.51
3028 3057 6.699575 ACTATATCCTGTTCAAAATGGCAC 57.300 37.500 0.00 0.00 0.00 5.01
3042 3071 4.948341 AATGGCACGGTATACAGATACA 57.052 40.909 10.15 5.57 39.91 2.29
3080 3109 7.584123 GCATGCTCAGTTATATTTCTTGTTACG 59.416 37.037 11.37 0.00 0.00 3.18
3422 3464 5.067674 TGCTCAACAGGTATGGAAATAATGC 59.932 40.000 0.00 0.00 0.00 3.56
3715 3759 5.063204 TGCGAAAATTCTTTCTCAGAAGGA 58.937 37.500 0.00 0.00 45.11 3.36
3861 3905 7.464045 GCCCGCATTTTAGTATTTTCAATGTTC 60.464 37.037 0.00 0.00 0.00 3.18
3905 3949 6.909357 GCTAGTCTATGAATGTGATGCAAAAC 59.091 38.462 0.00 0.00 0.00 2.43
3993 4037 7.344612 TCCTAAATGTCTTGTGAGCCTATCTTA 59.655 37.037 0.00 0.00 0.00 2.10
4008 4052 8.212259 AGCCTATCTTACCAATCTGATTATGT 57.788 34.615 1.98 6.31 0.00 2.29
4281 4329 9.845740 AACATACATACAAGGCATAGAAATACA 57.154 29.630 0.00 0.00 0.00 2.29
4436 4484 0.744414 TTGCCCAGTGCGCTAATCTC 60.744 55.000 9.73 0.00 45.60 2.75
4987 5043 5.163509 CCCAGTAGTTCAGATCTCGAAATCA 60.164 44.000 0.82 0.00 0.00 2.57
5090 5146 1.808531 GCCTGACATGCTTTGTGCCA 61.809 55.000 0.00 0.00 39.18 4.92
5154 5210 1.073964 CACAGCTTGTCCTCGATGTG 58.926 55.000 0.00 0.00 32.93 3.21
5190 5257 8.147704 TCGGCATTTGTTCATATTAGTCTCATA 58.852 33.333 0.00 0.00 0.00 2.15
5222 5289 6.627243 TGTAGTCACGTGATGCTAGTTTTAT 58.373 36.000 23.12 0.00 0.00 1.40
5224 5291 7.601130 TGTAGTCACGTGATGCTAGTTTTATTT 59.399 33.333 23.12 0.00 0.00 1.40
5230 5297 5.109210 GTGATGCTAGTTTTATTTTGCCCC 58.891 41.667 0.00 0.00 0.00 5.80
5236 5303 3.985008 AGTTTTATTTTGCCCCGTGTTC 58.015 40.909 0.00 0.00 0.00 3.18
5369 5436 1.746470 TAGACTTCGACGCCATGAGA 58.254 50.000 0.00 0.00 0.00 3.27
5460 5527 5.356751 GCCCCAATTGTTTTGTTCTTTTTCT 59.643 36.000 4.43 0.00 0.00 2.52
5487 5554 9.226606 CTTAGATTGTTTTTACCAGTGGTATGA 57.773 33.333 22.68 11.80 38.05 2.15
5503 5570 3.257127 GGTATGACTCCTATCCAGCACTC 59.743 52.174 0.00 0.00 0.00 3.51
5522 5591 1.375268 GAGAGTCTGCGCCTTGCTT 60.375 57.895 4.18 0.00 46.63 3.91
5542 5616 3.737559 TCAGAGGCCAAATACAACCAT 57.262 42.857 5.01 0.00 0.00 3.55
5546 5620 3.010584 AGAGGCCAAATACAACCATCAGT 59.989 43.478 5.01 0.00 0.00 3.41
5692 5771 1.564348 GGACAAAGGCTCCCCTGATAA 59.436 52.381 0.00 0.00 41.90 1.75
5693 5772 2.644676 GACAAAGGCTCCCCTGATAAC 58.355 52.381 0.00 0.00 41.90 1.89
5694 5773 1.992557 ACAAAGGCTCCCCTGATAACA 59.007 47.619 0.00 0.00 41.90 2.41
5695 5774 2.290960 ACAAAGGCTCCCCTGATAACAC 60.291 50.000 0.00 0.00 41.90 3.32
5708 5793 7.450634 TCCCCTGATAACACTCATATACAGTAC 59.549 40.741 0.00 0.00 0.00 2.73
5709 5794 7.451877 CCCCTGATAACACTCATATACAGTACT 59.548 40.741 0.00 0.00 0.00 2.73
5710 5795 9.516546 CCCTGATAACACTCATATACAGTACTA 57.483 37.037 0.00 0.00 0.00 1.82
5746 5831 3.040477 TGGCATGTAGAGATGGATGTGA 58.960 45.455 0.00 0.00 0.00 3.58
5752 5837 2.983907 AGAGATGGATGTGAGCACAG 57.016 50.000 9.37 0.00 45.48 3.66
5753 5838 2.186243 AGAGATGGATGTGAGCACAGT 58.814 47.619 9.37 0.00 45.48 3.55
5754 5839 2.168106 AGAGATGGATGTGAGCACAGTC 59.832 50.000 9.37 6.90 45.48 3.51
5756 5841 1.209019 GATGGATGTGAGCACAGTCCT 59.791 52.381 21.51 13.26 45.48 3.85
5757 5842 0.610174 TGGATGTGAGCACAGTCCTC 59.390 55.000 21.51 11.23 45.48 3.71
5797 5883 4.594920 AGATTCCTCTGTTTCTGTGGAAGA 59.405 41.667 12.74 0.00 37.98 2.87
5799 5885 3.576861 TCCTCTGTTTCTGTGGAAGAGA 58.423 45.455 0.00 0.00 35.91 3.10
5812 5898 6.818644 TCTGTGGAAGAGACATTATTAAGTGC 59.181 38.462 0.00 0.00 27.40 4.40
5815 5901 5.810587 TGGAAGAGACATTATTAAGTGCGAC 59.189 40.000 0.00 0.00 0.00 5.19
5819 5905 6.398918 AGAGACATTATTAAGTGCGACTTGT 58.601 36.000 10.59 1.75 39.11 3.16
5823 5909 6.599437 ACATTATTAAGTGCGACTTGTTGAC 58.401 36.000 10.59 0.00 39.11 3.18
5829 5915 3.904571 AGTGCGACTTGTTGACGTTATA 58.095 40.909 0.00 0.00 36.31 0.98
5844 5930 9.845305 GTTGACGTTATACTAGAATGCATTAAC 57.155 33.333 12.97 10.12 0.00 2.01
5845 5931 9.811995 TTGACGTTATACTAGAATGCATTAACT 57.188 29.630 12.97 8.89 0.00 2.24
5858 5944 8.981647 AGAATGCATTAACTTGAAACAATTGTC 58.018 29.630 12.97 0.49 0.00 3.18
5866 5952 9.743057 TTAACTTGAAACAATTGTCATTACCAG 57.257 29.630 12.39 3.35 0.00 4.00
5867 5953 7.346751 ACTTGAAACAATTGTCATTACCAGT 57.653 32.000 12.39 3.95 0.00 4.00
5868 5954 8.458573 ACTTGAAACAATTGTCATTACCAGTA 57.541 30.769 12.39 0.00 0.00 2.74
5869 5955 8.349983 ACTTGAAACAATTGTCATTACCAGTAC 58.650 33.333 12.39 0.00 0.00 2.73
5870 5956 7.809546 TGAAACAATTGTCATTACCAGTACA 57.190 32.000 12.39 0.00 0.00 2.90
5871 5957 8.402798 TGAAACAATTGTCATTACCAGTACAT 57.597 30.769 12.39 0.00 0.00 2.29
5872 5958 9.508642 TGAAACAATTGTCATTACCAGTACATA 57.491 29.630 12.39 0.00 0.00 2.29
5875 5961 9.679661 AACAATTGTCATTACCAGTACATATGA 57.320 29.630 12.39 0.00 0.00 2.15
5876 5962 9.679661 ACAATTGTCATTACCAGTACATATGAA 57.320 29.630 10.38 0.00 0.00 2.57
5878 5964 8.908786 ATTGTCATTACCAGTACATATGAAGG 57.091 34.615 10.38 7.71 0.00 3.46
5879 5965 6.288294 TGTCATTACCAGTACATATGAAGGC 58.712 40.000 10.38 0.00 0.00 4.35
5880 5966 6.126911 TGTCATTACCAGTACATATGAAGGCA 60.127 38.462 10.38 0.00 0.00 4.75
5881 5967 6.202954 GTCATTACCAGTACATATGAAGGCAC 59.797 42.308 10.38 0.00 0.00 5.01
5883 5969 4.142609 ACCAGTACATATGAAGGCACTG 57.857 45.455 10.38 12.75 40.86 3.66
5884 5970 3.519510 ACCAGTACATATGAAGGCACTGT 59.480 43.478 10.38 3.62 40.86 3.55
5885 5971 4.019321 ACCAGTACATATGAAGGCACTGTT 60.019 41.667 10.38 0.86 40.86 3.16
5886 5972 5.188948 ACCAGTACATATGAAGGCACTGTTA 59.811 40.000 10.38 0.00 40.86 2.41
5887 5973 6.112734 CCAGTACATATGAAGGCACTGTTAA 58.887 40.000 10.38 0.00 40.86 2.01
5888 5974 6.597672 CCAGTACATATGAAGGCACTGTTAAA 59.402 38.462 10.38 0.00 40.86 1.52
5889 5975 7.120579 CCAGTACATATGAAGGCACTGTTAAAA 59.879 37.037 10.38 0.00 40.86 1.52
5890 5976 8.677300 CAGTACATATGAAGGCACTGTTAAAAT 58.323 33.333 10.38 0.00 40.86 1.82
5891 5977 8.893727 AGTACATATGAAGGCACTGTTAAAATC 58.106 33.333 10.38 0.00 40.86 2.17
5892 5978 7.701539 ACATATGAAGGCACTGTTAAAATCA 57.298 32.000 10.38 0.00 40.86 2.57
5893 5979 8.121305 ACATATGAAGGCACTGTTAAAATCAA 57.879 30.769 10.38 0.00 40.86 2.57
5894 5980 8.752187 ACATATGAAGGCACTGTTAAAATCAAT 58.248 29.630 10.38 0.00 40.86 2.57
5895 5981 9.027129 CATATGAAGGCACTGTTAAAATCAATG 57.973 33.333 0.00 0.00 40.86 2.82
5896 5982 5.229423 TGAAGGCACTGTTAAAATCAATGC 58.771 37.500 0.00 0.00 40.86 3.56
5897 5983 4.870123 AGGCACTGTTAAAATCAATGCA 57.130 36.364 0.00 0.00 39.34 3.96
5898 5984 5.410355 AGGCACTGTTAAAATCAATGCAT 57.590 34.783 0.00 0.00 39.34 3.96
5899 5985 5.797051 AGGCACTGTTAAAATCAATGCATT 58.203 33.333 5.99 5.99 39.34 3.56
5900 5986 6.232692 AGGCACTGTTAAAATCAATGCATTT 58.767 32.000 9.83 0.00 39.34 2.32
5901 5987 6.369615 AGGCACTGTTAAAATCAATGCATTTC 59.630 34.615 9.83 0.00 39.34 2.17
5902 5988 6.369615 GGCACTGTTAAAATCAATGCATTTCT 59.630 34.615 9.83 0.00 39.34 2.52
5903 5989 7.095102 GGCACTGTTAAAATCAATGCATTTCTT 60.095 33.333 9.83 3.24 39.34 2.52
5904 5990 8.284693 GCACTGTTAAAATCAATGCATTTCTTT 58.715 29.630 9.83 11.50 37.85 2.52
5935 6021 9.581289 TTCTTTTTATGAAACCAGATAACCAGA 57.419 29.630 0.00 0.00 0.00 3.86
5936 6022 9.010029 TCTTTTTATGAAACCAGATAACCAGAC 57.990 33.333 0.00 0.00 0.00 3.51
5937 6023 7.696992 TTTTATGAAACCAGATAACCAGACC 57.303 36.000 0.00 0.00 0.00 3.85
5938 6024 3.713826 TGAAACCAGATAACCAGACCC 57.286 47.619 0.00 0.00 0.00 4.46
5939 6025 2.983192 TGAAACCAGATAACCAGACCCA 59.017 45.455 0.00 0.00 0.00 4.51
5940 6026 3.244770 TGAAACCAGATAACCAGACCCAC 60.245 47.826 0.00 0.00 0.00 4.61
5941 6027 2.344093 ACCAGATAACCAGACCCACT 57.656 50.000 0.00 0.00 0.00 4.00
5942 6028 2.632537 ACCAGATAACCAGACCCACTT 58.367 47.619 0.00 0.00 0.00 3.16
5943 6029 2.986728 ACCAGATAACCAGACCCACTTT 59.013 45.455 0.00 0.00 0.00 2.66
5944 6030 3.009143 ACCAGATAACCAGACCCACTTTC 59.991 47.826 0.00 0.00 0.00 2.62
5945 6031 3.264450 CCAGATAACCAGACCCACTTTCT 59.736 47.826 0.00 0.00 0.00 2.52
5946 6032 4.256920 CAGATAACCAGACCCACTTTCTG 58.743 47.826 0.00 0.00 40.30 3.02
5947 6033 4.020218 CAGATAACCAGACCCACTTTCTGA 60.020 45.833 0.83 0.00 42.81 3.27
5948 6034 4.785376 AGATAACCAGACCCACTTTCTGAT 59.215 41.667 0.83 0.00 42.81 2.90
5949 6035 2.867109 ACCAGACCCACTTTCTGATG 57.133 50.000 0.83 0.00 42.81 3.07
5950 6036 2.057922 ACCAGACCCACTTTCTGATGT 58.942 47.619 0.83 0.00 42.81 3.06
5951 6037 2.039084 ACCAGACCCACTTTCTGATGTC 59.961 50.000 0.83 0.00 42.81 3.06
5952 6038 2.038952 CCAGACCCACTTTCTGATGTCA 59.961 50.000 0.83 0.00 42.81 3.58
5953 6039 3.332919 CAGACCCACTTTCTGATGTCAG 58.667 50.000 3.61 3.61 42.81 3.51
5968 6054 5.964758 TGATGTCAGATTTTTAACCATGGC 58.035 37.500 13.04 0.00 0.00 4.40
5969 6055 5.479724 TGATGTCAGATTTTTAACCATGGCA 59.520 36.000 13.04 0.00 0.00 4.92
5970 6056 5.798125 TGTCAGATTTTTAACCATGGCAA 57.202 34.783 13.04 3.06 0.00 4.52
5971 6057 6.166984 TGTCAGATTTTTAACCATGGCAAA 57.833 33.333 13.04 9.90 0.00 3.68
5972 6058 6.767456 TGTCAGATTTTTAACCATGGCAAAT 58.233 32.000 13.04 11.22 0.00 2.32
5973 6059 6.873076 TGTCAGATTTTTAACCATGGCAAATC 59.127 34.615 21.12 21.12 35.11 2.17
5974 6060 6.034898 GTCAGATTTTTAACCATGGCAAATCG 59.965 38.462 21.79 18.42 38.39 3.34
5975 6061 6.071672 TCAGATTTTTAACCATGGCAAATCGA 60.072 34.615 21.79 19.57 38.39 3.59
5976 6062 6.589523 CAGATTTTTAACCATGGCAAATCGAA 59.410 34.615 21.79 12.22 38.39 3.71
5977 6063 6.589907 AGATTTTTAACCATGGCAAATCGAAC 59.410 34.615 21.79 9.03 38.39 3.95
5978 6064 3.479505 TTAACCATGGCAAATCGAACG 57.520 42.857 13.04 0.00 0.00 3.95
5979 6065 0.109319 AACCATGGCAAATCGAACGC 60.109 50.000 13.04 0.00 0.00 4.84
5980 6066 0.960364 ACCATGGCAAATCGAACGCT 60.960 50.000 13.04 0.00 0.00 5.07
5981 6067 0.171007 CCATGGCAAATCGAACGCTT 59.829 50.000 0.00 0.00 0.00 4.68
5982 6068 1.402720 CCATGGCAAATCGAACGCTTT 60.403 47.619 0.00 0.00 0.00 3.51
5983 6069 2.327568 CATGGCAAATCGAACGCTTTT 58.672 42.857 0.00 0.00 0.00 2.27
5984 6070 2.500509 TGGCAAATCGAACGCTTTTT 57.499 40.000 0.00 0.00 0.00 1.94
6005 6091 7.532682 TTTTTCTGTGGCAAATTAAGTTGTC 57.467 32.000 13.05 13.05 33.59 3.18
6006 6092 4.846779 TCTGTGGCAAATTAAGTTGTCC 57.153 40.909 16.76 16.83 31.90 4.02
6007 6093 4.469657 TCTGTGGCAAATTAAGTTGTCCT 58.530 39.130 16.76 0.00 31.90 3.85
6008 6094 4.278170 TCTGTGGCAAATTAAGTTGTCCTG 59.722 41.667 16.76 11.79 31.90 3.86
6009 6095 4.211125 TGTGGCAAATTAAGTTGTCCTGA 58.789 39.130 16.76 7.02 31.90 3.86
6010 6096 4.278170 TGTGGCAAATTAAGTTGTCCTGAG 59.722 41.667 16.76 0.00 31.90 3.35
6011 6097 3.255642 TGGCAAATTAAGTTGTCCTGAGC 59.744 43.478 16.76 1.00 31.90 4.26
6012 6098 3.255642 GGCAAATTAAGTTGTCCTGAGCA 59.744 43.478 16.26 0.00 0.00 4.26
6013 6099 4.082026 GGCAAATTAAGTTGTCCTGAGCAT 60.082 41.667 16.26 0.00 0.00 3.79
6014 6100 4.860907 GCAAATTAAGTTGTCCTGAGCATG 59.139 41.667 16.26 0.00 0.00 4.06
6015 6101 5.404946 CAAATTAAGTTGTCCTGAGCATGG 58.595 41.667 7.47 0.00 0.00 3.66
6016 6102 2.113860 TAAGTTGTCCTGAGCATGGC 57.886 50.000 0.00 0.00 0.00 4.40
6017 6103 0.111061 AAGTTGTCCTGAGCATGGCA 59.889 50.000 0.00 0.00 0.00 4.92
6018 6104 0.111061 AGTTGTCCTGAGCATGGCAA 59.889 50.000 0.00 0.00 0.00 4.52
6019 6105 1.180029 GTTGTCCTGAGCATGGCAAT 58.820 50.000 0.00 0.00 0.00 3.56
6020 6106 1.547372 GTTGTCCTGAGCATGGCAATT 59.453 47.619 0.00 0.00 0.00 2.32
6021 6107 1.927487 TGTCCTGAGCATGGCAATTT 58.073 45.000 0.00 0.00 0.00 1.82
6022 6108 2.250031 TGTCCTGAGCATGGCAATTTT 58.750 42.857 0.00 0.00 0.00 1.82
6023 6109 2.231964 TGTCCTGAGCATGGCAATTTTC 59.768 45.455 0.00 0.00 0.00 2.29
6024 6110 2.494870 GTCCTGAGCATGGCAATTTTCT 59.505 45.455 0.00 0.00 0.00 2.52
6025 6111 3.056322 GTCCTGAGCATGGCAATTTTCTT 60.056 43.478 0.00 0.00 0.00 2.52
6026 6112 3.579586 TCCTGAGCATGGCAATTTTCTTT 59.420 39.130 0.00 0.00 0.00 2.52
6027 6113 4.771577 TCCTGAGCATGGCAATTTTCTTTA 59.228 37.500 0.00 0.00 0.00 1.85
6028 6114 5.245751 TCCTGAGCATGGCAATTTTCTTTAA 59.754 36.000 0.00 0.00 0.00 1.52
6029 6115 5.349543 CCTGAGCATGGCAATTTTCTTTAAC 59.650 40.000 0.00 0.00 0.00 2.01
6030 6116 5.851720 TGAGCATGGCAATTTTCTTTAACA 58.148 33.333 0.00 0.00 0.00 2.41
6031 6117 6.286758 TGAGCATGGCAATTTTCTTTAACAA 58.713 32.000 0.00 0.00 0.00 2.83
6032 6118 6.424509 TGAGCATGGCAATTTTCTTTAACAAG 59.575 34.615 0.00 0.00 0.00 3.16
6033 6119 5.179929 AGCATGGCAATTTTCTTTAACAAGC 59.820 36.000 0.00 0.00 0.00 4.01
6034 6120 5.049543 GCATGGCAATTTTCTTTAACAAGCA 60.050 36.000 0.00 0.00 0.00 3.91
6035 6121 6.348704 GCATGGCAATTTTCTTTAACAAGCAT 60.349 34.615 0.00 0.00 0.00 3.79
6036 6122 6.542574 TGGCAATTTTCTTTAACAAGCATG 57.457 33.333 0.00 0.00 0.00 4.06
6037 6123 6.286758 TGGCAATTTTCTTTAACAAGCATGA 58.713 32.000 0.00 0.00 0.00 3.07
6038 6124 6.202570 TGGCAATTTTCTTTAACAAGCATGAC 59.797 34.615 0.00 0.00 0.00 3.06
6039 6125 6.202570 GGCAATTTTCTTTAACAAGCATGACA 59.797 34.615 0.00 0.00 0.00 3.58
6040 6126 7.254727 GGCAATTTTCTTTAACAAGCATGACAA 60.255 33.333 0.00 0.00 0.00 3.18
6041 6127 8.121708 GCAATTTTCTTTAACAAGCATGACAAA 58.878 29.630 0.00 0.00 0.00 2.83
6052 6138 8.986477 AACAAGCATGACAAATTAAATACTCC 57.014 30.769 0.00 0.00 0.00 3.85
6053 6139 7.547227 ACAAGCATGACAAATTAAATACTCCC 58.453 34.615 0.00 0.00 0.00 4.30
6054 6140 7.397192 ACAAGCATGACAAATTAAATACTCCCT 59.603 33.333 0.00 0.00 0.00 4.20
6055 6141 7.573968 AGCATGACAAATTAAATACTCCCTC 57.426 36.000 0.00 0.00 0.00 4.30
6056 6142 6.547510 AGCATGACAAATTAAATACTCCCTCC 59.452 38.462 0.00 0.00 0.00 4.30
6057 6143 6.513393 GCATGACAAATTAAATACTCCCTCCG 60.513 42.308 0.00 0.00 0.00 4.63
6058 6144 6.057321 TGACAAATTAAATACTCCCTCCGT 57.943 37.500 0.00 0.00 0.00 4.69
6059 6145 5.878116 TGACAAATTAAATACTCCCTCCGTG 59.122 40.000 0.00 0.00 0.00 4.94
6060 6146 6.057321 ACAAATTAAATACTCCCTCCGTGA 57.943 37.500 0.00 0.00 0.00 4.35
6061 6147 6.478129 ACAAATTAAATACTCCCTCCGTGAA 58.522 36.000 0.00 0.00 0.00 3.18
6062 6148 6.943718 ACAAATTAAATACTCCCTCCGTGAAA 59.056 34.615 0.00 0.00 0.00 2.69
6063 6149 7.449086 ACAAATTAAATACTCCCTCCGTGAAAA 59.551 33.333 0.00 0.00 0.00 2.29
6064 6150 8.301002 CAAATTAAATACTCCCTCCGTGAAAAA 58.699 33.333 0.00 0.00 0.00 1.94
6094 6180 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
6095 6181 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
6113 6199 8.854614 ACTTTAGTGATCTAAAATGCTCTTGT 57.145 30.769 0.00 0.00 42.97 3.16
6114 6200 9.944376 ACTTTAGTGATCTAAAATGCTCTTGTA 57.056 29.630 0.00 0.00 42.97 2.41
6135 6221 2.910688 TTTTTCACGGAGAGAGCACT 57.089 45.000 0.00 0.00 0.00 4.40
6136 6222 2.910688 TTTTCACGGAGAGAGCACTT 57.089 45.000 0.00 0.00 0.00 3.16
6137 6223 2.154854 TTTCACGGAGAGAGCACTTG 57.845 50.000 0.00 0.00 0.00 3.16
6138 6224 0.319900 TTCACGGAGAGAGCACTTGC 60.320 55.000 0.00 0.00 42.49 4.01
6139 6225 1.739562 CACGGAGAGAGCACTTGCC 60.740 63.158 0.00 0.00 43.38 4.52
6140 6226 2.210013 ACGGAGAGAGCACTTGCCA 61.210 57.895 0.00 0.00 43.38 4.92
6141 6227 1.220206 CGGAGAGAGCACTTGCCAT 59.780 57.895 0.00 0.00 43.38 4.40
6142 6228 1.088340 CGGAGAGAGCACTTGCCATG 61.088 60.000 0.00 0.00 43.38 3.66
6143 6229 0.035630 GGAGAGAGCACTTGCCATGT 60.036 55.000 0.00 0.00 43.38 3.21
6144 6230 1.612726 GGAGAGAGCACTTGCCATGTT 60.613 52.381 0.00 0.00 43.38 2.71
6145 6231 1.736681 GAGAGAGCACTTGCCATGTTC 59.263 52.381 0.00 0.00 43.38 3.18
6146 6232 1.072806 AGAGAGCACTTGCCATGTTCA 59.927 47.619 0.00 0.00 43.38 3.18
6147 6233 1.467734 GAGAGCACTTGCCATGTTCAG 59.532 52.381 0.00 0.00 43.38 3.02
6148 6234 0.524862 GAGCACTTGCCATGTTCAGG 59.475 55.000 0.00 0.00 43.38 3.86
6149 6235 0.178981 AGCACTTGCCATGTTCAGGT 60.179 50.000 0.00 0.00 43.38 4.00
6150 6236 0.675633 GCACTTGCCATGTTCAGGTT 59.324 50.000 0.00 0.00 34.31 3.50
6151 6237 1.069049 GCACTTGCCATGTTCAGGTTT 59.931 47.619 0.00 0.00 34.31 3.27
6152 6238 2.483538 GCACTTGCCATGTTCAGGTTTT 60.484 45.455 0.00 0.00 34.31 2.43
6153 6239 3.795877 CACTTGCCATGTTCAGGTTTTT 58.204 40.909 0.00 0.00 0.00 1.94
6178 6264 5.910637 TCTTCAAAATTTGATGTGCTTGC 57.089 34.783 17.40 0.00 39.84 4.01
6179 6265 5.603596 TCTTCAAAATTTGATGTGCTTGCT 58.396 33.333 17.40 0.00 39.84 3.91
6180 6266 6.747125 TCTTCAAAATTTGATGTGCTTGCTA 58.253 32.000 17.40 0.00 39.84 3.49
6181 6267 7.208777 TCTTCAAAATTTGATGTGCTTGCTAA 58.791 30.769 17.40 0.00 39.84 3.09
6182 6268 7.710044 TCTTCAAAATTTGATGTGCTTGCTAAA 59.290 29.630 17.40 0.00 39.84 1.85
6183 6269 7.410800 TCAAAATTTGATGTGCTTGCTAAAG 57.589 32.000 4.03 0.00 34.08 1.85
6184 6270 7.208777 TCAAAATTTGATGTGCTTGCTAAAGA 58.791 30.769 4.03 0.00 33.06 2.52
6185 6271 7.710044 TCAAAATTTGATGTGCTTGCTAAAGAA 59.290 29.630 4.03 0.00 33.06 2.52
6186 6272 8.336806 CAAAATTTGATGTGCTTGCTAAAGAAA 58.663 29.630 0.00 0.00 35.19 2.52
6187 6273 8.436046 AAATTTGATGTGCTTGCTAAAGAAAA 57.564 26.923 0.00 0.00 35.19 2.29
6188 6274 6.826893 TTTGATGTGCTTGCTAAAGAAAAC 57.173 33.333 0.00 0.00 35.19 2.43
6189 6275 5.772825 TGATGTGCTTGCTAAAGAAAACT 57.227 34.783 0.00 0.00 35.19 2.66
6190 6276 5.522456 TGATGTGCTTGCTAAAGAAAACTG 58.478 37.500 0.00 0.00 35.19 3.16
6191 6277 4.981806 TGTGCTTGCTAAAGAAAACTGT 57.018 36.364 0.00 0.00 35.19 3.55
6192 6278 4.920376 TGTGCTTGCTAAAGAAAACTGTC 58.080 39.130 0.00 0.00 35.19 3.51
6193 6279 4.397730 TGTGCTTGCTAAAGAAAACTGTCA 59.602 37.500 0.00 0.00 35.19 3.58
6194 6280 5.067674 TGTGCTTGCTAAAGAAAACTGTCAT 59.932 36.000 0.00 0.00 35.19 3.06
6195 6281 5.626955 GTGCTTGCTAAAGAAAACTGTCATC 59.373 40.000 0.00 0.00 35.19 2.92
6196 6282 5.299028 TGCTTGCTAAAGAAAACTGTCATCA 59.701 36.000 0.00 0.00 35.19 3.07
6197 6283 6.016024 TGCTTGCTAAAGAAAACTGTCATCAT 60.016 34.615 0.00 0.00 35.19 2.45
6198 6284 6.525976 GCTTGCTAAAGAAAACTGTCATCATC 59.474 38.462 0.00 0.00 35.19 2.92
6199 6285 6.500684 TGCTAAAGAAAACTGTCATCATCC 57.499 37.500 0.00 0.00 0.00 3.51
6200 6286 6.240894 TGCTAAAGAAAACTGTCATCATCCT 58.759 36.000 0.00 0.00 0.00 3.24
6201 6287 6.149973 TGCTAAAGAAAACTGTCATCATCCTG 59.850 38.462 0.00 0.00 0.00 3.86
6202 6288 6.372659 GCTAAAGAAAACTGTCATCATCCTGA 59.627 38.462 0.00 0.00 0.00 3.86
6203 6289 6.566197 AAAGAAAACTGTCATCATCCTGAC 57.434 37.500 0.00 0.00 44.70 3.51
6213 6299 6.446781 GTCATCATCCTGACAACATGATTT 57.553 37.500 0.00 0.00 44.03 2.17
6214 6300 6.263344 GTCATCATCCTGACAACATGATTTG 58.737 40.000 0.00 0.00 44.03 2.32
6215 6301 4.707030 TCATCCTGACAACATGATTTGC 57.293 40.909 0.00 0.00 31.03 3.68
6216 6302 3.444742 TCATCCTGACAACATGATTTGCC 59.555 43.478 0.00 0.00 31.03 4.52
6217 6303 3.159213 TCCTGACAACATGATTTGCCT 57.841 42.857 0.00 0.00 0.00 4.75
6218 6304 2.821378 TCCTGACAACATGATTTGCCTG 59.179 45.455 0.00 0.00 0.00 4.85
6219 6305 2.821378 CCTGACAACATGATTTGCCTGA 59.179 45.455 0.00 0.00 0.00 3.86
6220 6306 3.256383 CCTGACAACATGATTTGCCTGAA 59.744 43.478 0.00 0.00 0.00 3.02
6221 6307 4.262121 CCTGACAACATGATTTGCCTGAAA 60.262 41.667 0.00 0.00 0.00 2.69
6222 6308 5.273674 TGACAACATGATTTGCCTGAAAA 57.726 34.783 0.00 0.00 0.00 2.29
6223 6309 5.668471 TGACAACATGATTTGCCTGAAAAA 58.332 33.333 0.00 0.00 0.00 1.94
6224 6310 5.523188 TGACAACATGATTTGCCTGAAAAAC 59.477 36.000 0.00 0.00 0.00 2.43
6225 6311 4.507388 ACAACATGATTTGCCTGAAAAACG 59.493 37.500 0.00 0.00 0.00 3.60
6226 6312 4.320608 ACATGATTTGCCTGAAAAACGT 57.679 36.364 0.00 0.00 0.00 3.99
6227 6313 4.692228 ACATGATTTGCCTGAAAAACGTT 58.308 34.783 0.00 0.00 0.00 3.99
6228 6314 5.115480 ACATGATTTGCCTGAAAAACGTTT 58.885 33.333 7.96 7.96 0.00 3.60
6229 6315 5.006552 ACATGATTTGCCTGAAAAACGTTTG 59.993 36.000 15.46 2.42 0.00 2.93
6230 6316 4.748892 TGATTTGCCTGAAAAACGTTTGA 58.251 34.783 15.46 0.87 0.00 2.69
6231 6317 5.355596 TGATTTGCCTGAAAAACGTTTGAT 58.644 33.333 15.46 6.81 0.00 2.57
6232 6318 5.814705 TGATTTGCCTGAAAAACGTTTGATT 59.185 32.000 15.46 5.94 0.00 2.57
6233 6319 6.314896 TGATTTGCCTGAAAAACGTTTGATTT 59.685 30.769 15.46 5.13 0.00 2.17
6234 6320 6.487689 TTTGCCTGAAAAACGTTTGATTTT 57.512 29.167 15.46 4.72 33.36 1.82
6235 6321 5.462034 TGCCTGAAAAACGTTTGATTTTG 57.538 34.783 15.46 3.53 31.15 2.44
6236 6322 4.201763 TGCCTGAAAAACGTTTGATTTTGC 60.202 37.500 15.46 13.36 31.15 3.68
6237 6323 4.201763 GCCTGAAAAACGTTTGATTTTGCA 60.202 37.500 15.46 2.06 34.18 4.08
6238 6324 5.503846 GCCTGAAAAACGTTTGATTTTGCAT 60.504 36.000 15.46 0.00 34.71 3.96
6239 6325 5.902981 CCTGAAAAACGTTTGATTTTGCATG 59.097 36.000 15.46 0.00 34.71 4.06
6240 6326 5.261661 TGAAAAACGTTTGATTTTGCATGC 58.738 33.333 15.46 11.82 30.98 4.06
6241 6327 5.064452 TGAAAAACGTTTGATTTTGCATGCT 59.936 32.000 20.33 0.00 30.98 3.79
6242 6328 6.256539 TGAAAAACGTTTGATTTTGCATGCTA 59.743 30.769 20.33 8.83 30.98 3.49
6243 6329 6.595772 AAAACGTTTGATTTTGCATGCTAA 57.404 29.167 20.33 15.36 0.00 3.09
6244 6330 6.595772 AAACGTTTGATTTTGCATGCTAAA 57.404 29.167 25.55 25.55 0.00 1.85
6245 6331 6.595772 AACGTTTGATTTTGCATGCTAAAA 57.404 29.167 26.73 23.97 0.00 1.52
6246 6332 5.973158 ACGTTTGATTTTGCATGCTAAAAC 58.027 33.333 26.73 24.07 30.64 2.43
6247 6333 5.752955 ACGTTTGATTTTGCATGCTAAAACT 59.247 32.000 26.73 14.45 30.64 2.66
6248 6334 6.920758 ACGTTTGATTTTGCATGCTAAAACTA 59.079 30.769 26.73 19.26 30.64 2.24
6249 6335 7.598493 ACGTTTGATTTTGCATGCTAAAACTAT 59.402 29.630 26.73 13.47 30.64 2.12
6250 6336 9.071221 CGTTTGATTTTGCATGCTAAAACTATA 57.929 29.630 26.73 13.38 30.64 1.31
6257 6343 9.734620 TTTTGCATGCTAAAACTATATGATGTC 57.265 29.630 22.22 0.00 0.00 3.06
6258 6344 7.439157 TGCATGCTAAAACTATATGATGTCC 57.561 36.000 20.33 0.00 0.00 4.02
6259 6345 6.147656 TGCATGCTAAAACTATATGATGTCCG 59.852 38.462 20.33 0.00 0.00 4.79
6260 6346 6.368791 GCATGCTAAAACTATATGATGTCCGA 59.631 38.462 11.37 0.00 0.00 4.55
6261 6347 7.065085 GCATGCTAAAACTATATGATGTCCGAT 59.935 37.037 11.37 0.00 0.00 4.18
6262 6348 8.939929 CATGCTAAAACTATATGATGTCCGATT 58.060 33.333 0.00 0.00 0.00 3.34
6263 6349 8.902540 TGCTAAAACTATATGATGTCCGATTT 57.097 30.769 0.00 0.00 0.00 2.17
6264 6350 8.773645 TGCTAAAACTATATGATGTCCGATTTG 58.226 33.333 0.00 0.00 0.00 2.32
6265 6351 8.774586 GCTAAAACTATATGATGTCCGATTTGT 58.225 33.333 0.00 0.00 0.00 2.83
6268 6354 9.832445 AAAACTATATGATGTCCGATTTGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
6275 6361 7.548196 TGATGTCCGATTTGTAGTAAAATCC 57.452 36.000 4.54 0.00 41.52 3.01
6276 6362 7.335627 TGATGTCCGATTTGTAGTAAAATCCT 58.664 34.615 4.54 0.00 41.52 3.24
6277 6363 7.827236 TGATGTCCGATTTGTAGTAAAATCCTT 59.173 33.333 4.54 0.00 41.52 3.36
6278 6364 7.989416 TGTCCGATTTGTAGTAAAATCCTTT 57.011 32.000 4.54 0.00 41.52 3.11
6279 6365 8.398878 TGTCCGATTTGTAGTAAAATCCTTTT 57.601 30.769 4.54 0.00 41.52 2.27
6280 6366 8.852135 TGTCCGATTTGTAGTAAAATCCTTTTT 58.148 29.630 4.54 0.00 41.52 1.94
6328 6414 6.647212 TTCTTCATTGTACAGCAGAATACG 57.353 37.500 0.00 0.00 0.00 3.06
6329 6415 5.720202 TCTTCATTGTACAGCAGAATACGT 58.280 37.500 0.00 0.00 0.00 3.57
6330 6416 6.163476 TCTTCATTGTACAGCAGAATACGTT 58.837 36.000 0.00 0.00 0.00 3.99
6331 6417 6.649141 TCTTCATTGTACAGCAGAATACGTTT 59.351 34.615 0.00 0.00 0.00 3.60
6332 6418 6.795098 TCATTGTACAGCAGAATACGTTTT 57.205 33.333 0.00 0.00 0.00 2.43
6333 6419 6.598525 TCATTGTACAGCAGAATACGTTTTG 58.401 36.000 0.00 0.00 0.00 2.44
6334 6420 5.994887 TTGTACAGCAGAATACGTTTTGT 57.005 34.783 0.00 0.00 0.00 2.83
6335 6421 7.385478 TCATTGTACAGCAGAATACGTTTTGTA 59.615 33.333 0.00 0.00 37.49 2.41
6336 6422 7.661127 TTGTACAGCAGAATACGTTTTGTAT 57.339 32.000 0.00 0.00 45.81 2.29
6364 6450 6.449635 TTTTTGTAAGAGCAAAGAAGCAGA 57.550 33.333 0.00 0.00 39.20 4.26
6365 6451 6.639632 TTTTGTAAGAGCAAAGAAGCAGAT 57.360 33.333 0.00 0.00 39.20 2.90
6366 6452 5.618056 TTGTAAGAGCAAAGAAGCAGATG 57.382 39.130 0.00 0.00 36.85 2.90
6367 6453 4.898320 TGTAAGAGCAAAGAAGCAGATGA 58.102 39.130 0.00 0.00 36.85 2.92
6368 6454 5.308014 TGTAAGAGCAAAGAAGCAGATGAA 58.692 37.500 0.00 0.00 36.85 2.57
6369 6455 5.764686 TGTAAGAGCAAAGAAGCAGATGAAA 59.235 36.000 0.00 0.00 36.85 2.69
6370 6456 5.779529 AAGAGCAAAGAAGCAGATGAAAA 57.220 34.783 0.00 0.00 36.85 2.29
6371 6457 5.373981 AGAGCAAAGAAGCAGATGAAAAG 57.626 39.130 0.00 0.00 36.85 2.27
6372 6458 4.826183 AGAGCAAAGAAGCAGATGAAAAGT 59.174 37.500 0.00 0.00 36.85 2.66
6373 6459 5.048852 AGAGCAAAGAAGCAGATGAAAAGTC 60.049 40.000 0.00 0.00 36.85 3.01
6374 6460 3.910767 GCAAAGAAGCAGATGAAAAGTCG 59.089 43.478 0.00 0.00 0.00 4.18
6375 6461 4.555511 GCAAAGAAGCAGATGAAAAGTCGT 60.556 41.667 0.00 0.00 0.00 4.34
6376 6462 4.739046 AAGAAGCAGATGAAAAGTCGTG 57.261 40.909 0.00 0.00 0.00 4.35
6377 6463 3.070018 AGAAGCAGATGAAAAGTCGTGG 58.930 45.455 0.00 0.00 0.00 4.94
6378 6464 2.550830 AGCAGATGAAAAGTCGTGGT 57.449 45.000 0.00 0.00 0.00 4.16
6379 6465 2.146342 AGCAGATGAAAAGTCGTGGTG 58.854 47.619 0.00 0.00 0.00 4.17
6380 6466 2.143122 GCAGATGAAAAGTCGTGGTGA 58.857 47.619 0.00 0.00 0.00 4.02
6381 6467 2.158449 GCAGATGAAAAGTCGTGGTGAG 59.842 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 1.137086 AGCTAGTTGTACTCATGCCCG 59.863 52.381 0.00 0.00 0.00 6.13
131 133 6.119536 AGTACAAGTTGTTTGAGTGGATCAA 58.880 36.000 14.90 0.00 46.31 2.57
168 170 5.774690 TCACAAGAAAGCAAGATAATGGGTT 59.225 36.000 0.00 0.00 0.00 4.11
169 171 5.324409 TCACAAGAAAGCAAGATAATGGGT 58.676 37.500 0.00 0.00 0.00 4.51
423 425 3.244976 GCCAAATCTTTGACGGACAATG 58.755 45.455 4.25 0.00 40.55 2.82
506 508 3.668922 TTGGGGCTTGTGGTGTGCA 62.669 57.895 0.00 0.00 0.00 4.57
655 657 4.890988 TGTATAGGGTTGAGGAGGATTCA 58.109 43.478 0.00 0.00 0.00 2.57
704 706 2.029290 GCTAAACGGACAAGAGTGAGGA 60.029 50.000 0.00 0.00 0.00 3.71
750 752 7.446769 TGTTAAACACACACCACATCTAGTAT 58.553 34.615 0.00 0.00 0.00 2.12
818 820 7.069950 AGTCATGTTCATATTAGCTACTCCACA 59.930 37.037 0.00 0.00 0.00 4.17
819 821 7.383572 CAGTCATGTTCATATTAGCTACTCCAC 59.616 40.741 0.00 0.00 0.00 4.02
910 923 3.058155 TCAGCTACTCGACAGAACAGAAC 60.058 47.826 0.00 0.00 0.00 3.01
979 992 2.701107 GGAGTAACTTTGGTCTCCAGC 58.299 52.381 5.35 0.00 43.95 4.85
994 1007 4.225042 AGACACCATAAGTTGCATGGAGTA 59.775 41.667 10.25 0.00 44.30 2.59
1092 1105 4.679654 GCCAATAAAACAACATATAGGCGC 59.320 41.667 0.00 0.00 0.00 6.53
1094 1107 6.215845 CCAGCCAATAAAACAACATATAGGC 58.784 40.000 0.00 0.00 38.65 3.93
1131 1144 5.878406 TGTGTTTGGTTGGTCCATAATTT 57.122 34.783 0.00 0.00 46.60 1.82
1243 1259 2.948979 CTGTGGCTGTTTGGTTTGTAGA 59.051 45.455 0.00 0.00 0.00 2.59
1264 1280 6.752168 AGGCATGACCAAAATATTGATAAGC 58.248 36.000 0.00 0.00 43.14 3.09
1307 1323 2.159254 CCCATTCAGCCGTACCAAATTG 60.159 50.000 0.00 0.00 0.00 2.32
1332 1348 4.105537 TGCATATAGGGCCTGTTTGGATTA 59.894 41.667 18.53 0.00 38.35 1.75
1364 1380 1.754803 CTGTCCATTACACCCGCTCTA 59.245 52.381 0.00 0.00 33.45 2.43
1400 1416 6.282930 CACCTTCCATCTGTGAAAACAAAAT 58.717 36.000 0.00 0.00 31.66 1.82
1628 1644 8.867112 TGATGAAAGACCGAGTGTAAATATAC 57.133 34.615 0.00 0.00 0.00 1.47
1970 1993 9.304731 GCATGTATAATATTTGCAACATATGGG 57.695 33.333 7.80 0.00 33.58 4.00
2367 2391 2.550830 ACTCCACAAACAGGTAGCAG 57.449 50.000 0.00 0.00 0.00 4.24
2453 2480 1.474077 CAGCCAACAGAAATGCCCTAC 59.526 52.381 0.00 0.00 0.00 3.18
2528 2555 5.745227 ACCAAAGACACCCACTATAATCTG 58.255 41.667 0.00 0.00 0.00 2.90
2627 2655 9.799106 ATAAGAGTAATGATTTACTGAATGGGG 57.201 33.333 3.27 0.00 46.32 4.96
3028 3057 8.040716 TGACATATCTGTGTATCTGTATACCG 57.959 38.462 0.00 0.00 37.72 4.02
3042 3071 3.134262 ACTGAGCATGCTGACATATCTGT 59.866 43.478 28.27 15.47 38.67 3.41
3080 3109 5.052481 AGGCAAGCTTTTTCAACTGAATTC 58.948 37.500 0.00 0.00 33.54 2.17
3291 3333 2.616524 ACCAACTCCTACTGGCACTTA 58.383 47.619 0.00 0.00 36.03 2.24
3422 3464 8.986477 AATCCAACTCTTTCGAAAATTTATGG 57.014 30.769 12.41 15.27 0.00 2.74
3542 3586 3.632604 TCAACAAACGGATAGGCACAAAA 59.367 39.130 0.00 0.00 0.00 2.44
3715 3759 7.571983 CGCATGTGAGAACTCTTTCTATTGTTT 60.572 37.037 0.00 0.00 42.53 2.83
3861 3905 8.194104 AGACTAGCGAGCAATATGATTAATAGG 58.806 37.037 0.00 0.00 0.00 2.57
3905 3949 5.473162 TGTGTGGATAAACCTTGACTTGATG 59.527 40.000 0.00 0.00 39.86 3.07
4088 4132 1.150536 GGCACACCAAGGACTTCCA 59.849 57.895 0.00 0.00 35.33 3.53
4184 4230 7.119262 AGTGTTTAGTCAGATATTTGAAACCCG 59.881 37.037 0.00 0.00 0.00 5.28
4281 4329 5.480422 GGGGTAATTCAAGAAATGGTGAAGT 59.520 40.000 0.00 0.00 0.00 3.01
4436 4484 2.502213 TAATACATGCCGAGTCACCG 57.498 50.000 0.00 0.00 0.00 4.94
4526 4574 4.211125 TGCAAGTTTCCCACATAACAAGA 58.789 39.130 0.00 0.00 0.00 3.02
5104 5160 2.365941 TCGCGGTAATGACATCCCATAA 59.634 45.455 6.13 0.00 0.00 1.90
5154 5210 6.304356 TGAACAAATGCCGATTGATATCTC 57.696 37.500 3.98 0.00 0.00 2.75
5190 5257 5.470098 AGCATCACGTGACTACAAAAGAAAT 59.530 36.000 22.71 0.00 0.00 2.17
5194 5261 4.923871 ACTAGCATCACGTGACTACAAAAG 59.076 41.667 22.71 13.80 0.00 2.27
5206 5273 4.798387 GGGCAAAATAAAACTAGCATCACG 59.202 41.667 0.00 0.00 0.00 4.35
5222 5289 2.829003 TGCGAACACGGGGCAAAA 60.829 55.556 0.00 0.00 33.01 2.44
5224 5291 2.457743 ATACTGCGAACACGGGGCAA 62.458 55.000 0.00 0.00 36.06 4.52
5230 5297 3.364062 CTCTCCTTATACTGCGAACACG 58.636 50.000 0.00 0.00 0.00 4.49
5236 5303 4.302455 CATGTTCCTCTCCTTATACTGCG 58.698 47.826 0.00 0.00 0.00 5.18
5369 5436 1.675641 GGCAGTTCAGCGACCCATT 60.676 57.895 0.00 0.00 34.64 3.16
5437 5504 6.823182 AGAGAAAAAGAACAAAACAATTGGGG 59.177 34.615 10.83 0.00 0.00 4.96
5460 5527 9.226606 CATACCACTGGTAAAAACAATCTAAGA 57.773 33.333 12.09 0.00 41.85 2.10
5477 5544 3.006323 GCTGGATAGGAGTCATACCACTG 59.994 52.174 0.00 0.00 0.00 3.66
5478 5545 3.235200 GCTGGATAGGAGTCATACCACT 58.765 50.000 0.00 0.00 0.00 4.00
5487 5554 1.213182 TCTCGAGTGCTGGATAGGAGT 59.787 52.381 13.13 0.00 0.00 3.85
5522 5591 3.010027 TGATGGTTGTATTTGGCCTCTGA 59.990 43.478 3.32 0.00 0.00 3.27
5708 5793 7.798596 ACATGCCAAATACAGAAGATTCTAG 57.201 36.000 0.00 0.00 35.34 2.43
5709 5794 8.704668 TCTACATGCCAAATACAGAAGATTCTA 58.295 33.333 0.00 0.00 35.34 2.10
5710 5795 7.568349 TCTACATGCCAAATACAGAAGATTCT 58.432 34.615 0.00 0.00 38.25 2.40
5718 5803 5.614308 TCCATCTCTACATGCCAAATACAG 58.386 41.667 0.00 0.00 0.00 2.74
5722 5807 4.825634 CACATCCATCTCTACATGCCAAAT 59.174 41.667 0.00 0.00 0.00 2.32
5746 5831 0.035630 GCAAGATGGAGGACTGTGCT 60.036 55.000 0.00 0.00 0.00 4.40
5752 5837 0.251354 TGCTGAGCAAGATGGAGGAC 59.749 55.000 3.81 0.00 34.76 3.85
5753 5838 0.986527 TTGCTGAGCAAGATGGAGGA 59.013 50.000 17.04 0.00 43.99 3.71
5754 5839 3.564262 TTGCTGAGCAAGATGGAGG 57.436 52.632 17.04 0.00 43.99 4.30
5797 5883 6.649141 TCAACAAGTCGCACTTAATAATGTCT 59.351 34.615 1.95 0.00 36.03 3.41
5799 5885 6.599437 GTCAACAAGTCGCACTTAATAATGT 58.401 36.000 1.95 0.00 36.03 2.71
5812 5898 7.513196 GCATTCTAGTATAACGTCAACAAGTCG 60.513 40.741 0.00 0.00 34.89 4.18
5815 5901 7.520119 TGCATTCTAGTATAACGTCAACAAG 57.480 36.000 0.00 0.00 0.00 3.16
5819 5905 9.811995 AGTTAATGCATTCTAGTATAACGTCAA 57.188 29.630 16.86 0.00 0.00 3.18
5844 5930 8.349245 TGTACTGGTAATGACAATTGTTTCAAG 58.651 33.333 13.36 7.17 0.00 3.02
5845 5931 8.226819 TGTACTGGTAATGACAATTGTTTCAA 57.773 30.769 13.36 0.00 0.00 2.69
5855 5941 6.126911 TGCCTTCATATGTACTGGTAATGACA 60.127 38.462 1.90 0.00 0.00 3.58
5856 5942 6.202954 GTGCCTTCATATGTACTGGTAATGAC 59.797 42.308 1.90 0.00 0.00 3.06
5858 5944 6.203530 CAGTGCCTTCATATGTACTGGTAATG 59.796 42.308 1.90 6.44 33.69 1.90
5864 5950 7.609760 TTTAACAGTGCCTTCATATGTACTG 57.390 36.000 17.00 17.00 40.84 2.74
5865 5951 8.807948 ATTTTAACAGTGCCTTCATATGTACT 57.192 30.769 1.90 0.00 0.00 2.73
5866 5952 8.673711 TGATTTTAACAGTGCCTTCATATGTAC 58.326 33.333 1.90 0.00 0.00 2.90
5867 5953 8.800370 TGATTTTAACAGTGCCTTCATATGTA 57.200 30.769 1.90 0.00 0.00 2.29
5868 5954 7.701539 TGATTTTAACAGTGCCTTCATATGT 57.298 32.000 1.90 0.00 0.00 2.29
5869 5955 9.027129 CATTGATTTTAACAGTGCCTTCATATG 57.973 33.333 0.00 0.00 0.00 1.78
5870 5956 7.707893 GCATTGATTTTAACAGTGCCTTCATAT 59.292 33.333 0.00 0.00 42.33 1.78
5871 5957 7.035004 GCATTGATTTTAACAGTGCCTTCATA 58.965 34.615 0.00 0.00 42.33 2.15
5872 5958 5.870978 GCATTGATTTTAACAGTGCCTTCAT 59.129 36.000 0.00 0.00 42.33 2.57
5873 5959 5.221402 TGCATTGATTTTAACAGTGCCTTCA 60.221 36.000 11.48 0.00 45.65 3.02
5874 5960 5.229423 TGCATTGATTTTAACAGTGCCTTC 58.771 37.500 11.48 0.00 45.65 3.46
5875 5961 5.212532 TGCATTGATTTTAACAGTGCCTT 57.787 34.783 11.48 0.00 45.65 4.35
5876 5962 4.870123 TGCATTGATTTTAACAGTGCCT 57.130 36.364 11.48 0.00 45.65 4.75
5877 5963 6.369615 AGAAATGCATTGATTTTAACAGTGCC 59.630 34.615 13.82 0.00 45.65 5.01
5878 5964 7.355332 AGAAATGCATTGATTTTAACAGTGC 57.645 32.000 13.82 0.00 46.14 4.40
5909 5995 9.581289 TCTGGTTATCTGGTTTCATAAAAAGAA 57.419 29.630 0.00 0.00 0.00 2.52
5910 5996 9.010029 GTCTGGTTATCTGGTTTCATAAAAAGA 57.990 33.333 0.00 0.00 0.00 2.52
5911 5997 8.244113 GGTCTGGTTATCTGGTTTCATAAAAAG 58.756 37.037 0.00 0.00 0.00 2.27
5912 5998 7.177744 GGGTCTGGTTATCTGGTTTCATAAAAA 59.822 37.037 0.00 0.00 0.00 1.94
5913 5999 6.661805 GGGTCTGGTTATCTGGTTTCATAAAA 59.338 38.462 0.00 0.00 0.00 1.52
5914 6000 6.184789 GGGTCTGGTTATCTGGTTTCATAAA 58.815 40.000 0.00 0.00 0.00 1.40
5915 6001 5.251932 TGGGTCTGGTTATCTGGTTTCATAA 59.748 40.000 0.00 0.00 0.00 1.90
5916 6002 4.785914 TGGGTCTGGTTATCTGGTTTCATA 59.214 41.667 0.00 0.00 0.00 2.15
5917 6003 3.591527 TGGGTCTGGTTATCTGGTTTCAT 59.408 43.478 0.00 0.00 0.00 2.57
5918 6004 2.983192 TGGGTCTGGTTATCTGGTTTCA 59.017 45.455 0.00 0.00 0.00 2.69
5919 6005 3.009143 AGTGGGTCTGGTTATCTGGTTTC 59.991 47.826 0.00 0.00 0.00 2.78
5920 6006 2.986728 AGTGGGTCTGGTTATCTGGTTT 59.013 45.455 0.00 0.00 0.00 3.27
5921 6007 2.632537 AGTGGGTCTGGTTATCTGGTT 58.367 47.619 0.00 0.00 0.00 3.67
5922 6008 2.344093 AGTGGGTCTGGTTATCTGGT 57.656 50.000 0.00 0.00 0.00 4.00
5923 6009 3.264450 AGAAAGTGGGTCTGGTTATCTGG 59.736 47.826 0.00 0.00 0.00 3.86
5924 6010 4.020218 TCAGAAAGTGGGTCTGGTTATCTG 60.020 45.833 1.85 0.00 42.37 2.90
5925 6011 4.168101 TCAGAAAGTGGGTCTGGTTATCT 58.832 43.478 1.85 0.00 42.37 1.98
5926 6012 4.553330 TCAGAAAGTGGGTCTGGTTATC 57.447 45.455 1.85 0.00 42.37 1.75
5927 6013 4.289672 ACATCAGAAAGTGGGTCTGGTTAT 59.710 41.667 1.85 0.00 42.37 1.89
5928 6014 3.650942 ACATCAGAAAGTGGGTCTGGTTA 59.349 43.478 1.85 0.00 42.37 2.85
5929 6015 2.443255 ACATCAGAAAGTGGGTCTGGTT 59.557 45.455 1.85 0.00 42.37 3.67
5930 6016 2.039084 GACATCAGAAAGTGGGTCTGGT 59.961 50.000 1.85 0.00 42.37 4.00
5931 6017 2.038952 TGACATCAGAAAGTGGGTCTGG 59.961 50.000 1.85 0.00 42.37 3.86
5932 6018 3.332919 CTGACATCAGAAAGTGGGTCTG 58.667 50.000 2.51 0.00 46.59 3.51
5933 6019 3.692257 CTGACATCAGAAAGTGGGTCT 57.308 47.619 2.51 0.00 46.59 3.85
5944 6030 6.038356 GCCATGGTTAAAAATCTGACATCAG 58.962 40.000 14.67 2.24 45.08 2.90
5945 6031 5.479724 TGCCATGGTTAAAAATCTGACATCA 59.520 36.000 14.67 0.00 0.00 3.07
5946 6032 5.964758 TGCCATGGTTAAAAATCTGACATC 58.035 37.500 14.67 0.00 0.00 3.06
5947 6033 5.999205 TGCCATGGTTAAAAATCTGACAT 57.001 34.783 14.67 0.00 0.00 3.06
5948 6034 5.798125 TTGCCATGGTTAAAAATCTGACA 57.202 34.783 14.67 0.00 0.00 3.58
5949 6035 6.034898 CGATTTGCCATGGTTAAAAATCTGAC 59.965 38.462 25.14 12.20 35.87 3.51
5950 6036 6.071672 TCGATTTGCCATGGTTAAAAATCTGA 60.072 34.615 25.14 22.09 35.87 3.27
5951 6037 6.098679 TCGATTTGCCATGGTTAAAAATCTG 58.901 36.000 25.14 21.05 35.87 2.90
5952 6038 6.279513 TCGATTTGCCATGGTTAAAAATCT 57.720 33.333 25.14 11.77 35.87 2.40
5953 6039 6.453659 CGTTCGATTTGCCATGGTTAAAAATC 60.454 38.462 21.77 21.77 35.08 2.17
5954 6040 5.347364 CGTTCGATTTGCCATGGTTAAAAAT 59.653 36.000 14.67 13.80 0.00 1.82
5955 6041 4.681942 CGTTCGATTTGCCATGGTTAAAAA 59.318 37.500 14.67 9.70 0.00 1.94
5956 6042 4.230657 CGTTCGATTTGCCATGGTTAAAA 58.769 39.130 14.67 12.16 0.00 1.52
5957 6043 3.827625 CGTTCGATTTGCCATGGTTAAA 58.172 40.909 14.67 15.21 0.00 1.52
5958 6044 2.414824 GCGTTCGATTTGCCATGGTTAA 60.415 45.455 14.67 8.35 0.00 2.01
5959 6045 1.131504 GCGTTCGATTTGCCATGGTTA 59.868 47.619 14.67 0.00 0.00 2.85
5960 6046 0.109319 GCGTTCGATTTGCCATGGTT 60.109 50.000 14.67 0.00 0.00 3.67
5961 6047 0.960364 AGCGTTCGATTTGCCATGGT 60.960 50.000 14.67 0.00 0.00 3.55
5962 6048 0.171007 AAGCGTTCGATTTGCCATGG 59.829 50.000 7.63 7.63 0.00 3.66
5963 6049 1.981254 AAAGCGTTCGATTTGCCATG 58.019 45.000 7.61 0.00 0.00 3.66
5964 6050 2.723124 AAAAGCGTTCGATTTGCCAT 57.277 40.000 9.07 0.00 0.00 4.40
5965 6051 2.500509 AAAAAGCGTTCGATTTGCCA 57.499 40.000 9.07 0.00 0.00 4.92
5981 6067 6.536941 GGACAACTTAATTTGCCACAGAAAAA 59.463 34.615 5.53 0.00 0.00 1.94
5982 6068 6.045955 GGACAACTTAATTTGCCACAGAAAA 58.954 36.000 5.53 0.00 0.00 2.29
5983 6069 5.362430 AGGACAACTTAATTTGCCACAGAAA 59.638 36.000 15.90 0.00 0.00 2.52
5984 6070 4.892934 AGGACAACTTAATTTGCCACAGAA 59.107 37.500 15.90 0.00 0.00 3.02
5985 6071 4.278170 CAGGACAACTTAATTTGCCACAGA 59.722 41.667 15.90 0.00 0.00 3.41
5986 6072 4.278170 TCAGGACAACTTAATTTGCCACAG 59.722 41.667 15.90 9.04 0.00 3.66
5987 6073 4.211125 TCAGGACAACTTAATTTGCCACA 58.789 39.130 15.90 4.85 0.00 4.17
5988 6074 4.798574 CTCAGGACAACTTAATTTGCCAC 58.201 43.478 15.90 4.95 0.00 5.01
5989 6075 3.255642 GCTCAGGACAACTTAATTTGCCA 59.744 43.478 15.90 2.58 0.00 4.92
5990 6076 3.255642 TGCTCAGGACAACTTAATTTGCC 59.744 43.478 5.53 7.84 0.00 4.52
5991 6077 4.503741 TGCTCAGGACAACTTAATTTGC 57.496 40.909 5.53 0.00 0.00 3.68
5992 6078 5.404946 CCATGCTCAGGACAACTTAATTTG 58.595 41.667 4.15 4.15 0.00 2.32
5993 6079 4.082026 GCCATGCTCAGGACAACTTAATTT 60.082 41.667 0.00 0.00 0.00 1.82
5994 6080 3.445096 GCCATGCTCAGGACAACTTAATT 59.555 43.478 0.00 0.00 0.00 1.40
5995 6081 3.019564 GCCATGCTCAGGACAACTTAAT 58.980 45.455 0.00 0.00 0.00 1.40
5996 6082 2.224744 TGCCATGCTCAGGACAACTTAA 60.225 45.455 0.00 0.00 0.00 1.85
5997 6083 1.350684 TGCCATGCTCAGGACAACTTA 59.649 47.619 0.00 0.00 0.00 2.24
5998 6084 0.111061 TGCCATGCTCAGGACAACTT 59.889 50.000 0.00 0.00 0.00 2.66
5999 6085 0.111061 TTGCCATGCTCAGGACAACT 59.889 50.000 0.00 0.00 0.00 3.16
6000 6086 1.180029 ATTGCCATGCTCAGGACAAC 58.820 50.000 0.00 0.00 0.00 3.32
6001 6087 1.927487 AATTGCCATGCTCAGGACAA 58.073 45.000 0.00 0.00 0.00 3.18
6002 6088 1.927487 AAATTGCCATGCTCAGGACA 58.073 45.000 0.00 0.00 0.00 4.02
6003 6089 2.494870 AGAAAATTGCCATGCTCAGGAC 59.505 45.455 0.00 0.00 0.00 3.85
6004 6090 2.811410 AGAAAATTGCCATGCTCAGGA 58.189 42.857 0.00 0.00 0.00 3.86
6005 6091 3.604875 AAGAAAATTGCCATGCTCAGG 57.395 42.857 0.00 0.00 0.00 3.86
6006 6092 5.927689 TGTTAAAGAAAATTGCCATGCTCAG 59.072 36.000 0.00 0.00 0.00 3.35
6007 6093 5.851720 TGTTAAAGAAAATTGCCATGCTCA 58.148 33.333 0.00 0.00 0.00 4.26
6008 6094 6.619232 GCTTGTTAAAGAAAATTGCCATGCTC 60.619 38.462 0.00 0.00 35.19 4.26
6009 6095 5.179929 GCTTGTTAAAGAAAATTGCCATGCT 59.820 36.000 0.00 0.00 35.19 3.79
6010 6096 5.049543 TGCTTGTTAAAGAAAATTGCCATGC 60.050 36.000 0.00 0.00 35.19 4.06
6011 6097 6.542574 TGCTTGTTAAAGAAAATTGCCATG 57.457 33.333 0.00 0.00 35.19 3.66
6012 6098 6.935771 TCATGCTTGTTAAAGAAAATTGCCAT 59.064 30.769 0.00 0.00 35.19 4.40
6013 6099 6.202570 GTCATGCTTGTTAAAGAAAATTGCCA 59.797 34.615 0.00 0.00 35.19 4.92
6014 6100 6.202570 TGTCATGCTTGTTAAAGAAAATTGCC 59.797 34.615 0.00 0.00 35.19 4.52
6015 6101 7.176285 TGTCATGCTTGTTAAAGAAAATTGC 57.824 32.000 0.00 0.00 35.19 3.56
6027 6113 8.034804 GGGAGTATTTAATTTGTCATGCTTGTT 58.965 33.333 0.00 0.00 0.00 2.83
6028 6114 7.397192 AGGGAGTATTTAATTTGTCATGCTTGT 59.603 33.333 0.00 0.00 0.00 3.16
6029 6115 7.775120 AGGGAGTATTTAATTTGTCATGCTTG 58.225 34.615 0.00 0.00 0.00 4.01
6030 6116 7.068716 GGAGGGAGTATTTAATTTGTCATGCTT 59.931 37.037 0.00 0.00 0.00 3.91
6031 6117 6.547510 GGAGGGAGTATTTAATTTGTCATGCT 59.452 38.462 0.00 0.00 0.00 3.79
6032 6118 6.513393 CGGAGGGAGTATTTAATTTGTCATGC 60.513 42.308 0.00 0.00 0.00 4.06
6033 6119 6.542370 ACGGAGGGAGTATTTAATTTGTCATG 59.458 38.462 0.00 0.00 0.00 3.07
6034 6120 6.542370 CACGGAGGGAGTATTTAATTTGTCAT 59.458 38.462 0.00 0.00 0.00 3.06
6035 6121 5.878116 CACGGAGGGAGTATTTAATTTGTCA 59.122 40.000 0.00 0.00 0.00 3.58
6036 6122 6.110707 TCACGGAGGGAGTATTTAATTTGTC 58.889 40.000 0.00 0.00 0.00 3.18
6037 6123 6.057321 TCACGGAGGGAGTATTTAATTTGT 57.943 37.500 0.00 0.00 0.00 2.83
6038 6124 6.995511 TTCACGGAGGGAGTATTTAATTTG 57.004 37.500 0.00 0.00 0.00 2.32
6039 6125 8.411991 TTTTTCACGGAGGGAGTATTTAATTT 57.588 30.769 0.00 0.00 0.00 1.82
6068 6154 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
6069 6155 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
6070 6156 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
6071 6157 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
6087 6173 9.944376 ACAAGAGCATTTTAGATCACTAAAGTA 57.056 29.630 0.00 0.00 45.40 2.24
6088 6174 8.854614 ACAAGAGCATTTTAGATCACTAAAGT 57.145 30.769 0.00 0.00 45.40 2.66
6116 6202 2.872245 CAAGTGCTCTCTCCGTGAAAAA 59.128 45.455 0.00 0.00 0.00 1.94
6117 6203 2.483876 CAAGTGCTCTCTCCGTGAAAA 58.516 47.619 0.00 0.00 0.00 2.29
6118 6204 1.873903 GCAAGTGCTCTCTCCGTGAAA 60.874 52.381 0.00 0.00 38.21 2.69
6119 6205 0.319900 GCAAGTGCTCTCTCCGTGAA 60.320 55.000 0.00 0.00 38.21 3.18
6120 6206 1.290324 GCAAGTGCTCTCTCCGTGA 59.710 57.895 0.00 0.00 38.21 4.35
6121 6207 1.739562 GGCAAGTGCTCTCTCCGTG 60.740 63.158 2.85 0.00 41.70 4.94
6122 6208 1.548357 ATGGCAAGTGCTCTCTCCGT 61.548 55.000 2.85 0.00 41.70 4.69
6123 6209 1.088340 CATGGCAAGTGCTCTCTCCG 61.088 60.000 2.85 0.00 41.70 4.63
6124 6210 0.035630 ACATGGCAAGTGCTCTCTCC 60.036 55.000 2.85 0.00 41.70 3.71
6125 6211 1.736681 GAACATGGCAAGTGCTCTCTC 59.263 52.381 2.85 0.00 41.70 3.20
6126 6212 1.072806 TGAACATGGCAAGTGCTCTCT 59.927 47.619 2.08 0.00 41.70 3.10
6127 6213 1.467734 CTGAACATGGCAAGTGCTCTC 59.532 52.381 2.08 0.00 41.70 3.20
6128 6214 1.531423 CTGAACATGGCAAGTGCTCT 58.469 50.000 2.08 0.00 41.70 4.09
6129 6215 0.524862 CCTGAACATGGCAAGTGCTC 59.475 55.000 2.08 0.00 41.70 4.26
6130 6216 0.178981 ACCTGAACATGGCAAGTGCT 60.179 50.000 2.08 0.00 41.70 4.40
6131 6217 0.675633 AACCTGAACATGGCAAGTGC 59.324 50.000 0.00 0.00 41.14 4.40
6132 6218 3.457610 AAAACCTGAACATGGCAAGTG 57.542 42.857 0.00 0.00 0.00 3.16
6152 6238 7.697291 GCAAGCACATCAAATTTTGAAGAAAAA 59.303 29.630 18.36 0.00 43.95 1.94
6153 6239 7.066043 AGCAAGCACATCAAATTTTGAAGAAAA 59.934 29.630 18.36 0.00 43.95 2.29
6154 6240 6.539464 AGCAAGCACATCAAATTTTGAAGAAA 59.461 30.769 18.36 0.00 43.95 2.52
6155 6241 6.050432 AGCAAGCACATCAAATTTTGAAGAA 58.950 32.000 18.36 0.00 43.95 2.52
6156 6242 5.603596 AGCAAGCACATCAAATTTTGAAGA 58.396 33.333 18.36 0.00 43.95 2.87
6157 6243 5.917541 AGCAAGCACATCAAATTTTGAAG 57.082 34.783 15.34 13.39 43.95 3.02
6158 6244 7.710044 TCTTTAGCAAGCACATCAAATTTTGAA 59.290 29.630 15.34 0.53 43.95 2.69
6159 6245 7.208777 TCTTTAGCAAGCACATCAAATTTTGA 58.791 30.769 13.88 13.88 45.01 2.69
6160 6246 7.410800 TCTTTAGCAAGCACATCAAATTTTG 57.589 32.000 2.59 2.59 0.00 2.44
6161 6247 8.436046 TTTCTTTAGCAAGCACATCAAATTTT 57.564 26.923 0.00 0.00 0.00 1.82
6162 6248 8.337532 GTTTTCTTTAGCAAGCACATCAAATTT 58.662 29.630 0.00 0.00 0.00 1.82
6163 6249 7.712205 AGTTTTCTTTAGCAAGCACATCAAATT 59.288 29.630 0.00 0.00 0.00 1.82
6164 6250 7.170320 CAGTTTTCTTTAGCAAGCACATCAAAT 59.830 33.333 0.00 0.00 0.00 2.32
6165 6251 6.476380 CAGTTTTCTTTAGCAAGCACATCAAA 59.524 34.615 0.00 0.00 0.00 2.69
6166 6252 5.978919 CAGTTTTCTTTAGCAAGCACATCAA 59.021 36.000 0.00 0.00 0.00 2.57
6167 6253 5.067674 ACAGTTTTCTTTAGCAAGCACATCA 59.932 36.000 0.00 0.00 0.00 3.07
6168 6254 5.523369 ACAGTTTTCTTTAGCAAGCACATC 58.477 37.500 0.00 0.00 0.00 3.06
6169 6255 5.067674 TGACAGTTTTCTTTAGCAAGCACAT 59.932 36.000 0.00 0.00 0.00 3.21
6170 6256 4.397730 TGACAGTTTTCTTTAGCAAGCACA 59.602 37.500 0.00 0.00 0.00 4.57
6171 6257 4.920376 TGACAGTTTTCTTTAGCAAGCAC 58.080 39.130 0.00 0.00 0.00 4.40
6172 6258 5.299028 TGATGACAGTTTTCTTTAGCAAGCA 59.701 36.000 0.00 0.00 0.00 3.91
6173 6259 5.762045 TGATGACAGTTTTCTTTAGCAAGC 58.238 37.500 0.00 0.00 0.00 4.01
6174 6260 7.025963 GGATGATGACAGTTTTCTTTAGCAAG 58.974 38.462 0.00 0.00 0.00 4.01
6175 6261 6.716628 AGGATGATGACAGTTTTCTTTAGCAA 59.283 34.615 0.00 0.00 0.00 3.91
6176 6262 6.149973 CAGGATGATGACAGTTTTCTTTAGCA 59.850 38.462 0.00 0.00 39.69 3.49
6177 6263 6.372659 TCAGGATGATGACAGTTTTCTTTAGC 59.627 38.462 0.00 0.00 42.56 3.09
6178 6264 7.912056 TCAGGATGATGACAGTTTTCTTTAG 57.088 36.000 0.00 0.00 42.56 1.85
6195 6281 3.446161 AGGCAAATCATGTTGTCAGGATG 59.554 43.478 3.79 0.00 42.99 3.51
6196 6282 3.446161 CAGGCAAATCATGTTGTCAGGAT 59.554 43.478 3.79 0.00 45.20 3.24
6197 6283 2.821378 CAGGCAAATCATGTTGTCAGGA 59.179 45.455 3.79 0.00 35.50 3.86
6198 6284 2.821378 TCAGGCAAATCATGTTGTCAGG 59.179 45.455 3.79 0.00 35.50 3.86
6199 6285 4.508461 TTCAGGCAAATCATGTTGTCAG 57.492 40.909 3.79 0.00 35.50 3.51
6200 6286 4.933505 TTTCAGGCAAATCATGTTGTCA 57.066 36.364 3.79 0.00 35.50 3.58
6201 6287 5.332506 CGTTTTTCAGGCAAATCATGTTGTC 60.333 40.000 0.00 0.00 33.13 3.18
6202 6288 4.507388 CGTTTTTCAGGCAAATCATGTTGT 59.493 37.500 0.00 0.00 0.00 3.32
6203 6289 4.507388 ACGTTTTTCAGGCAAATCATGTTG 59.493 37.500 0.00 0.00 0.00 3.33
6204 6290 4.692228 ACGTTTTTCAGGCAAATCATGTT 58.308 34.783 0.00 0.00 0.00 2.71
6205 6291 4.320608 ACGTTTTTCAGGCAAATCATGT 57.679 36.364 0.00 0.00 0.00 3.21
6206 6292 5.233902 TCAAACGTTTTTCAGGCAAATCATG 59.766 36.000 11.66 0.00 0.00 3.07
6207 6293 5.355596 TCAAACGTTTTTCAGGCAAATCAT 58.644 33.333 11.66 0.00 0.00 2.45
6208 6294 4.748892 TCAAACGTTTTTCAGGCAAATCA 58.251 34.783 11.66 0.00 0.00 2.57
6209 6295 5.905480 ATCAAACGTTTTTCAGGCAAATC 57.095 34.783 11.66 0.00 0.00 2.17
6210 6296 6.676237 AAATCAAACGTTTTTCAGGCAAAT 57.324 29.167 11.66 0.00 0.00 2.32
6211 6297 6.310197 CAAAATCAAACGTTTTTCAGGCAAA 58.690 32.000 11.66 0.00 0.00 3.68
6212 6298 5.672321 GCAAAATCAAACGTTTTTCAGGCAA 60.672 36.000 11.66 0.00 0.00 4.52
6213 6299 4.201763 GCAAAATCAAACGTTTTTCAGGCA 60.202 37.500 11.66 0.00 0.00 4.75
6214 6300 4.201763 TGCAAAATCAAACGTTTTTCAGGC 60.202 37.500 11.66 11.42 0.00 4.85
6215 6301 5.462034 TGCAAAATCAAACGTTTTTCAGG 57.538 34.783 11.66 0.00 0.00 3.86
6216 6302 5.393163 GCATGCAAAATCAAACGTTTTTCAG 59.607 36.000 14.21 0.00 28.32 3.02
6217 6303 5.064452 AGCATGCAAAATCAAACGTTTTTCA 59.936 32.000 21.98 0.00 0.00 2.69
6218 6304 5.500825 AGCATGCAAAATCAAACGTTTTTC 58.499 33.333 21.98 0.00 0.00 2.29
6219 6305 5.482686 AGCATGCAAAATCAAACGTTTTT 57.517 30.435 21.98 0.93 0.00 1.94
6220 6306 6.595772 TTAGCATGCAAAATCAAACGTTTT 57.404 29.167 21.98 0.00 0.00 2.43
6221 6307 6.595772 TTTAGCATGCAAAATCAAACGTTT 57.404 29.167 21.98 7.96 0.00 3.60
6222 6308 6.257630 AGTTTTAGCATGCAAAATCAAACGTT 59.742 30.769 21.98 0.00 0.00 3.99
6223 6309 5.752955 AGTTTTAGCATGCAAAATCAAACGT 59.247 32.000 21.98 0.00 0.00 3.99
6224 6310 6.214205 AGTTTTAGCATGCAAAATCAAACG 57.786 33.333 21.98 0.00 0.00 3.60
6231 6317 9.734620 GACATCATATAGTTTTAGCATGCAAAA 57.265 29.630 21.98 19.56 0.00 2.44
6232 6318 8.352201 GGACATCATATAGTTTTAGCATGCAAA 58.648 33.333 21.98 14.94 0.00 3.68
6233 6319 7.307930 CGGACATCATATAGTTTTAGCATGCAA 60.308 37.037 21.98 9.44 0.00 4.08
6234 6320 6.147656 CGGACATCATATAGTTTTAGCATGCA 59.852 38.462 21.98 2.77 0.00 3.96
6235 6321 6.368791 TCGGACATCATATAGTTTTAGCATGC 59.631 38.462 10.51 10.51 0.00 4.06
6236 6322 7.889589 TCGGACATCATATAGTTTTAGCATG 57.110 36.000 0.00 0.00 0.00 4.06
6237 6323 9.507329 AAATCGGACATCATATAGTTTTAGCAT 57.493 29.630 0.00 0.00 0.00 3.79
6238 6324 8.773645 CAAATCGGACATCATATAGTTTTAGCA 58.226 33.333 0.00 0.00 0.00 3.49
6239 6325 8.774586 ACAAATCGGACATCATATAGTTTTAGC 58.225 33.333 0.00 0.00 0.00 3.09
6242 6328 9.832445 ACTACAAATCGGACATCATATAGTTTT 57.168 29.630 0.00 0.00 0.00 2.43
6249 6335 9.268268 GGATTTTACTACAAATCGGACATCATA 57.732 33.333 0.00 0.00 42.07 2.15
6250 6336 7.993183 AGGATTTTACTACAAATCGGACATCAT 59.007 33.333 0.00 0.00 42.07 2.45
6251 6337 7.335627 AGGATTTTACTACAAATCGGACATCA 58.664 34.615 0.00 0.00 42.07 3.07
6252 6338 7.787725 AGGATTTTACTACAAATCGGACATC 57.212 36.000 0.00 0.00 42.07 3.06
6253 6339 8.575649 AAAGGATTTTACTACAAATCGGACAT 57.424 30.769 0.00 0.00 42.07 3.06
6254 6340 7.989416 AAAGGATTTTACTACAAATCGGACA 57.011 32.000 0.00 0.00 42.07 4.02
6302 6388 8.015087 CGTATTCTGCTGTACAATGAAGAAAAA 58.985 33.333 9.07 0.30 0.00 1.94
6303 6389 7.172532 ACGTATTCTGCTGTACAATGAAGAAAA 59.827 33.333 9.07 0.00 0.00 2.29
6304 6390 6.649141 ACGTATTCTGCTGTACAATGAAGAAA 59.351 34.615 9.07 0.00 0.00 2.52
6305 6391 6.163476 ACGTATTCTGCTGTACAATGAAGAA 58.837 36.000 7.75 7.75 0.00 2.52
6306 6392 5.720202 ACGTATTCTGCTGTACAATGAAGA 58.280 37.500 0.00 0.00 0.00 2.87
6307 6393 6.408858 AACGTATTCTGCTGTACAATGAAG 57.591 37.500 0.00 0.00 0.00 3.02
6308 6394 6.795098 AAACGTATTCTGCTGTACAATGAA 57.205 33.333 0.00 2.34 0.00 2.57
6309 6395 6.203915 ACAAAACGTATTCTGCTGTACAATGA 59.796 34.615 0.00 0.00 0.00 2.57
6310 6396 6.370593 ACAAAACGTATTCTGCTGTACAATG 58.629 36.000 0.00 0.00 0.00 2.82
6311 6397 6.554334 ACAAAACGTATTCTGCTGTACAAT 57.446 33.333 0.00 0.00 0.00 2.71
6312 6398 5.994887 ACAAAACGTATTCTGCTGTACAA 57.005 34.783 0.00 0.00 0.00 2.41
6313 6399 7.661127 AATACAAAACGTATTCTGCTGTACA 57.339 32.000 0.00 0.00 45.84 2.90
6341 6427 6.449635 TCTGCTTCTTTGCTCTTACAAAAA 57.550 33.333 0.00 0.00 38.96 1.94
6342 6428 6.262944 TCATCTGCTTCTTTGCTCTTACAAAA 59.737 34.615 0.00 0.00 38.96 2.44
6343 6429 5.764686 TCATCTGCTTCTTTGCTCTTACAAA 59.235 36.000 0.00 0.00 37.20 2.83
6344 6430 5.308014 TCATCTGCTTCTTTGCTCTTACAA 58.692 37.500 0.00 0.00 0.00 2.41
6345 6431 4.898320 TCATCTGCTTCTTTGCTCTTACA 58.102 39.130 0.00 0.00 0.00 2.41
6346 6432 5.869753 TTCATCTGCTTCTTTGCTCTTAC 57.130 39.130 0.00 0.00 0.00 2.34
6347 6433 6.488006 ACTTTTCATCTGCTTCTTTGCTCTTA 59.512 34.615 0.00 0.00 0.00 2.10
6348 6434 5.301298 ACTTTTCATCTGCTTCTTTGCTCTT 59.699 36.000 0.00 0.00 0.00 2.85
6349 6435 4.826183 ACTTTTCATCTGCTTCTTTGCTCT 59.174 37.500 0.00 0.00 0.00 4.09
6350 6436 5.118642 ACTTTTCATCTGCTTCTTTGCTC 57.881 39.130 0.00 0.00 0.00 4.26
6351 6437 4.320057 CGACTTTTCATCTGCTTCTTTGCT 60.320 41.667 0.00 0.00 0.00 3.91
6352 6438 3.910767 CGACTTTTCATCTGCTTCTTTGC 59.089 43.478 0.00 0.00 0.00 3.68
6353 6439 4.908156 CACGACTTTTCATCTGCTTCTTTG 59.092 41.667 0.00 0.00 0.00 2.77
6354 6440 4.023707 CCACGACTTTTCATCTGCTTCTTT 60.024 41.667 0.00 0.00 0.00 2.52
6355 6441 3.499918 CCACGACTTTTCATCTGCTTCTT 59.500 43.478 0.00 0.00 0.00 2.52
6356 6442 3.070018 CCACGACTTTTCATCTGCTTCT 58.930 45.455 0.00 0.00 0.00 2.85
6357 6443 2.808543 ACCACGACTTTTCATCTGCTTC 59.191 45.455 0.00 0.00 0.00 3.86
6358 6444 2.549754 CACCACGACTTTTCATCTGCTT 59.450 45.455 0.00 0.00 0.00 3.91
6359 6445 2.146342 CACCACGACTTTTCATCTGCT 58.854 47.619 0.00 0.00 0.00 4.24
6360 6446 2.143122 TCACCACGACTTTTCATCTGC 58.857 47.619 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.