Multiple sequence alignment - TraesCS5A01G460000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G460000 chr5A 100.000 3056 0 0 1 3056 640620371 640617316 0.000000e+00 5644.0
1 TraesCS5A01G460000 chr5A 94.982 279 14 0 1 279 514033043 514032765 3.620000e-119 438.0
2 TraesCS5A01G460000 chr5A 89.055 201 21 1 620 820 566366983 566367182 6.540000e-62 248.0
3 TraesCS5A01G460000 chr5B 94.156 2019 80 23 838 2821 643261796 643259781 0.000000e+00 3040.0
4 TraesCS5A01G460000 chr5B 94.265 279 16 0 1 279 522678714 522678436 7.830000e-116 427.0
5 TraesCS5A01G460000 chr5B 94.265 279 16 0 1 279 522724054 522723776 7.830000e-116 427.0
6 TraesCS5A01G460000 chr5B 94.265 279 16 0 1 279 522786968 522786690 7.830000e-116 427.0
7 TraesCS5A01G460000 chr5B 87.879 165 8 7 407 570 643262016 643261863 1.870000e-42 183.0
8 TraesCS5A01G460000 chr5B 89.781 137 7 5 277 407 643262298 643262163 5.240000e-38 169.0
9 TraesCS5A01G460000 chr5D 96.380 1768 49 8 971 2725 512220517 512218752 0.000000e+00 2896.0
10 TraesCS5A01G460000 chr5D 89.357 498 24 13 838 1320 512227955 512227472 1.570000e-167 599.0
11 TraesCS5A01G460000 chr5D 92.744 317 21 2 2741 3056 512218767 512218452 9.990000e-125 457.0
12 TraesCS5A01G460000 chr5D 88.095 168 7 4 407 570 512228181 512228023 1.450000e-43 187.0
13 TraesCS5A01G460000 chr5D 91.111 135 7 3 278 408 512222284 512222151 8.710000e-41 178.0
14 TraesCS5A01G460000 chr5D 85.526 152 8 4 419 570 512222008 512221871 2.460000e-31 147.0
15 TraesCS5A01G460000 chr1B 86.738 656 46 15 867 1517 549374713 549375332 0.000000e+00 691.0
16 TraesCS5A01G460000 chr1B 92.607 257 15 1 1558 1810 549375328 549375584 1.730000e-97 366.0
17 TraesCS5A01G460000 chr1A 95.341 279 13 0 1 279 3215093 3214815 7.780000e-121 444.0
18 TraesCS5A01G460000 chr6B 95.341 279 12 1 1 279 648505979 648506256 2.800000e-120 442.0
19 TraesCS5A01G460000 chr6B 93.863 277 17 0 1 277 704144672 704144396 4.710000e-113 418.0
20 TraesCS5A01G460000 chr6A 94.265 279 16 0 1 279 560201205 560200927 7.830000e-116 427.0
21 TraesCS5A01G460000 chr6A 93.214 280 17 2 1 279 480309813 480310091 7.890000e-111 411.0
22 TraesCS5A01G460000 chr6A 92.157 204 15 1 620 823 6295008 6294806 1.390000e-73 287.0
23 TraesCS5A01G460000 chr6A 87.264 212 27 0 612 823 22684146 22683935 3.040000e-60 243.0
24 TraesCS5A01G460000 chr2A 91.176 204 17 1 620 823 100646295 100646093 3.000000e-70 276.0
25 TraesCS5A01G460000 chr2A 89.524 210 22 0 614 823 413178832 413179041 1.810000e-67 267.0
26 TraesCS5A01G460000 chr3B 90.196 204 19 1 620 823 77005527 77005325 6.500000e-67 265.0
27 TraesCS5A01G460000 chr3B 88.725 204 22 1 620 823 738505902 738505700 6.540000e-62 248.0
28 TraesCS5A01G460000 chr3A 89.202 213 21 2 612 823 70655035 70655246 6.500000e-67 265.0
29 TraesCS5A01G460000 chr4A 88.725 204 21 2 620 823 556696201 556696402 6.540000e-62 248.0
30 TraesCS5A01G460000 chr2D 97.143 35 0 1 3022 3056 538271085 538271052 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G460000 chr5A 640617316 640620371 3055 True 5644.000000 5644 100.000000 1 3056 1 chr5A.!!$R2 3055
1 TraesCS5A01G460000 chr5B 643259781 643262298 2517 True 1130.666667 3040 90.605333 277 2821 3 chr5B.!!$R4 2544
2 TraesCS5A01G460000 chr5D 512218452 512222284 3832 True 919.500000 2896 91.440250 278 3056 4 chr5D.!!$R1 2778
3 TraesCS5A01G460000 chr5D 512227472 512228181 709 True 393.000000 599 88.726000 407 1320 2 chr5D.!!$R2 913
4 TraesCS5A01G460000 chr1B 549374713 549375584 871 False 528.500000 691 89.672500 867 1810 2 chr1B.!!$F1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 813 0.247736 CCTCTGTTTAGGCTGCTCGT 59.752 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 3243 0.383491 CGTTCGTGCAGCTTGTCTTG 60.383 55.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.524095 TCCCAAGTGGATGTGTTCATT 57.476 42.857 0.00 0.00 38.61 2.57
21 22 3.156293 TCCCAAGTGGATGTGTTCATTG 58.844 45.455 0.00 0.00 38.61 2.82
22 23 2.892852 CCCAAGTGGATGTGTTCATTGT 59.107 45.455 0.00 0.00 37.39 2.71
23 24 3.305539 CCCAAGTGGATGTGTTCATTGTG 60.306 47.826 0.00 0.00 37.39 3.33
24 25 3.318839 CCAAGTGGATGTGTTCATTGTGT 59.681 43.478 0.00 0.00 37.39 3.72
25 26 4.202141 CCAAGTGGATGTGTTCATTGTGTT 60.202 41.667 0.00 0.00 37.39 3.32
26 27 4.572985 AGTGGATGTGTTCATTGTGTTG 57.427 40.909 0.00 0.00 34.06 3.33
27 28 3.052036 GTGGATGTGTTCATTGTGTTGC 58.948 45.455 0.00 0.00 34.06 4.17
28 29 2.287487 TGGATGTGTTCATTGTGTTGCG 60.287 45.455 0.00 0.00 34.06 4.85
29 30 2.287547 GGATGTGTTCATTGTGTTGCGT 60.288 45.455 0.00 0.00 34.06 5.24
30 31 2.185867 TGTGTTCATTGTGTTGCGTG 57.814 45.000 0.00 0.00 0.00 5.34
31 32 1.740025 TGTGTTCATTGTGTTGCGTGA 59.260 42.857 0.00 0.00 0.00 4.35
32 33 2.223226 TGTGTTCATTGTGTTGCGTGAG 60.223 45.455 0.00 0.00 0.00 3.51
33 34 2.031560 GTGTTCATTGTGTTGCGTGAGA 59.968 45.455 0.00 0.00 0.00 3.27
34 35 2.680339 TGTTCATTGTGTTGCGTGAGAA 59.320 40.909 0.00 0.00 0.00 2.87
35 36 3.127721 TGTTCATTGTGTTGCGTGAGAAA 59.872 39.130 0.00 0.00 0.00 2.52
53 54 8.705048 GTGAGAAACGATAGAAAAATCTAGGT 57.295 34.615 0.00 0.00 41.38 3.08
54 55 8.596380 GTGAGAAACGATAGAAAAATCTAGGTG 58.404 37.037 0.00 0.00 41.38 4.00
55 56 8.528643 TGAGAAACGATAGAAAAATCTAGGTGA 58.471 33.333 0.00 0.00 41.38 4.02
56 57 8.934507 AGAAACGATAGAAAAATCTAGGTGAG 57.065 34.615 0.00 0.00 41.38 3.51
57 58 8.750298 AGAAACGATAGAAAAATCTAGGTGAGA 58.250 33.333 0.00 0.00 38.18 3.27
58 59 9.367444 GAAACGATAGAAAAATCTAGGTGAGAA 57.633 33.333 0.00 0.00 37.55 2.87
59 60 8.934507 AACGATAGAAAAATCTAGGTGAGAAG 57.065 34.615 0.00 0.00 37.55 2.85
60 61 8.294954 ACGATAGAAAAATCTAGGTGAGAAGA 57.705 34.615 0.00 0.00 37.55 2.87
61 62 8.410141 ACGATAGAAAAATCTAGGTGAGAAGAG 58.590 37.037 0.00 0.00 37.55 2.85
62 63 8.625651 CGATAGAAAAATCTAGGTGAGAAGAGA 58.374 37.037 0.00 0.00 36.24 3.10
65 66 8.201242 AGAAAAATCTAGGTGAGAAGAGAAGT 57.799 34.615 0.00 0.00 37.85 3.01
66 67 8.093927 AGAAAAATCTAGGTGAGAAGAGAAGTG 58.906 37.037 0.00 0.00 37.85 3.16
67 68 6.926630 AAATCTAGGTGAGAAGAGAAGTGT 57.073 37.500 0.00 0.00 37.85 3.55
68 69 5.913137 ATCTAGGTGAGAAGAGAAGTGTG 57.087 43.478 0.00 0.00 37.85 3.82
69 70 2.829741 AGGTGAGAAGAGAAGTGTGC 57.170 50.000 0.00 0.00 0.00 4.57
70 71 2.324541 AGGTGAGAAGAGAAGTGTGCT 58.675 47.619 0.00 0.00 0.00 4.40
71 72 2.036992 AGGTGAGAAGAGAAGTGTGCTG 59.963 50.000 0.00 0.00 0.00 4.41
72 73 2.411904 GTGAGAAGAGAAGTGTGCTGG 58.588 52.381 0.00 0.00 0.00 4.85
73 74 2.036475 GTGAGAAGAGAAGTGTGCTGGA 59.964 50.000 0.00 0.00 0.00 3.86
74 75 2.700371 TGAGAAGAGAAGTGTGCTGGAA 59.300 45.455 0.00 0.00 0.00 3.53
75 76 3.244009 TGAGAAGAGAAGTGTGCTGGAAG 60.244 47.826 0.00 0.00 0.00 3.46
76 77 2.968574 AGAAGAGAAGTGTGCTGGAAGA 59.031 45.455 0.00 0.00 34.07 2.87
77 78 3.582208 AGAAGAGAAGTGTGCTGGAAGAT 59.418 43.478 0.00 0.00 34.07 2.40
78 79 3.331478 AGAGAAGTGTGCTGGAAGATG 57.669 47.619 0.00 0.00 34.07 2.90
79 80 2.636893 AGAGAAGTGTGCTGGAAGATGT 59.363 45.455 0.00 0.00 34.07 3.06
80 81 2.740981 GAGAAGTGTGCTGGAAGATGTG 59.259 50.000 0.00 0.00 34.07 3.21
81 82 1.808945 GAAGTGTGCTGGAAGATGTGG 59.191 52.381 0.00 0.00 34.07 4.17
82 83 0.767375 AGTGTGCTGGAAGATGTGGT 59.233 50.000 0.00 0.00 34.07 4.16
83 84 1.977854 AGTGTGCTGGAAGATGTGGTA 59.022 47.619 0.00 0.00 34.07 3.25
84 85 2.027745 AGTGTGCTGGAAGATGTGGTAG 60.028 50.000 0.00 0.00 34.07 3.18
85 86 1.278985 TGTGCTGGAAGATGTGGTAGG 59.721 52.381 0.00 0.00 34.07 3.18
86 87 1.555075 GTGCTGGAAGATGTGGTAGGA 59.445 52.381 0.00 0.00 34.07 2.94
87 88 1.833630 TGCTGGAAGATGTGGTAGGAG 59.166 52.381 0.00 0.00 34.07 3.69
88 89 1.834263 GCTGGAAGATGTGGTAGGAGT 59.166 52.381 0.00 0.00 34.07 3.85
89 90 2.419297 GCTGGAAGATGTGGTAGGAGTG 60.419 54.545 0.00 0.00 34.07 3.51
90 91 2.169352 CTGGAAGATGTGGTAGGAGTGG 59.831 54.545 0.00 0.00 34.07 4.00
91 92 2.188817 GGAAGATGTGGTAGGAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
92 93 2.572104 GGAAGATGTGGTAGGAGTGGTT 59.428 50.000 0.00 0.00 0.00 3.67
93 94 3.009143 GGAAGATGTGGTAGGAGTGGTTT 59.991 47.826 0.00 0.00 0.00 3.27
94 95 4.224370 GGAAGATGTGGTAGGAGTGGTTTA 59.776 45.833 0.00 0.00 0.00 2.01
95 96 5.104485 GGAAGATGTGGTAGGAGTGGTTTAT 60.104 44.000 0.00 0.00 0.00 1.40
96 97 6.099269 GGAAGATGTGGTAGGAGTGGTTTATA 59.901 42.308 0.00 0.00 0.00 0.98
97 98 7.202102 GGAAGATGTGGTAGGAGTGGTTTATAT 60.202 40.741 0.00 0.00 0.00 0.86
98 99 8.792830 AAGATGTGGTAGGAGTGGTTTATATA 57.207 34.615 0.00 0.00 0.00 0.86
99 100 8.423906 AGATGTGGTAGGAGTGGTTTATATAG 57.576 38.462 0.00 0.00 0.00 1.31
100 101 8.232412 AGATGTGGTAGGAGTGGTTTATATAGA 58.768 37.037 0.00 0.00 0.00 1.98
101 102 8.974292 ATGTGGTAGGAGTGGTTTATATAGAT 57.026 34.615 0.00 0.00 0.00 1.98
102 103 8.418597 TGTGGTAGGAGTGGTTTATATAGATC 57.581 38.462 0.00 0.00 0.00 2.75
103 104 7.176165 TGTGGTAGGAGTGGTTTATATAGATCG 59.824 40.741 0.00 0.00 0.00 3.69
104 105 6.662234 TGGTAGGAGTGGTTTATATAGATCGG 59.338 42.308 0.00 0.00 0.00 4.18
105 106 6.888632 GGTAGGAGTGGTTTATATAGATCGGA 59.111 42.308 0.00 0.00 0.00 4.55
106 107 7.395489 GGTAGGAGTGGTTTATATAGATCGGAA 59.605 40.741 0.00 0.00 0.00 4.30
107 108 7.850935 AGGAGTGGTTTATATAGATCGGAAA 57.149 36.000 0.00 0.00 0.00 3.13
108 109 8.437274 AGGAGTGGTTTATATAGATCGGAAAT 57.563 34.615 0.00 0.00 0.00 2.17
109 110 9.543231 AGGAGTGGTTTATATAGATCGGAAATA 57.457 33.333 0.00 0.00 0.00 1.40
113 114 8.827677 GTGGTTTATATAGATCGGAAATATGGC 58.172 37.037 0.00 0.00 0.00 4.40
114 115 7.990886 TGGTTTATATAGATCGGAAATATGGCC 59.009 37.037 0.00 0.00 0.00 5.36
120 121 3.088259 CGGAAATATGGCCGTTGGA 57.912 52.632 0.77 0.00 42.49 3.53
121 122 1.384525 CGGAAATATGGCCGTTGGAA 58.615 50.000 0.77 0.00 42.49 3.53
122 123 1.746220 CGGAAATATGGCCGTTGGAAA 59.254 47.619 0.77 0.00 42.49 3.13
123 124 2.360801 CGGAAATATGGCCGTTGGAAAT 59.639 45.455 0.77 0.00 42.49 2.17
124 125 3.566322 CGGAAATATGGCCGTTGGAAATA 59.434 43.478 0.77 0.00 42.49 1.40
125 126 4.217550 CGGAAATATGGCCGTTGGAAATAT 59.782 41.667 0.77 0.00 42.49 1.28
126 127 5.413213 CGGAAATATGGCCGTTGGAAATATA 59.587 40.000 0.77 0.00 42.49 0.86
127 128 6.403200 CGGAAATATGGCCGTTGGAAATATAG 60.403 42.308 0.77 0.00 42.49 1.31
128 129 5.897377 AATATGGCCGTTGGAAATATAGC 57.103 39.130 0.77 0.00 0.00 2.97
129 130 3.508845 ATGGCCGTTGGAAATATAGCT 57.491 42.857 0.00 0.00 0.00 3.32
130 131 2.571212 TGGCCGTTGGAAATATAGCTG 58.429 47.619 0.00 0.00 0.00 4.24
131 132 2.092646 TGGCCGTTGGAAATATAGCTGT 60.093 45.455 0.00 0.00 0.00 4.40
132 133 2.949644 GGCCGTTGGAAATATAGCTGTT 59.050 45.455 0.00 0.00 0.00 3.16
133 134 3.380320 GGCCGTTGGAAATATAGCTGTTT 59.620 43.478 0.00 0.00 0.00 2.83
134 135 4.351192 GCCGTTGGAAATATAGCTGTTTG 58.649 43.478 0.00 0.00 0.00 2.93
135 136 4.095782 GCCGTTGGAAATATAGCTGTTTGA 59.904 41.667 0.00 0.00 0.00 2.69
136 137 5.392595 GCCGTTGGAAATATAGCTGTTTGAA 60.393 40.000 0.00 0.00 0.00 2.69
137 138 6.616947 CCGTTGGAAATATAGCTGTTTGAAA 58.383 36.000 0.00 0.00 0.00 2.69
138 139 7.087639 CCGTTGGAAATATAGCTGTTTGAAAA 58.912 34.615 0.00 0.00 0.00 2.29
139 140 7.759433 CCGTTGGAAATATAGCTGTTTGAAAAT 59.241 33.333 0.00 0.00 0.00 1.82
140 141 9.781834 CGTTGGAAATATAGCTGTTTGAAAATA 57.218 29.630 0.00 0.00 0.00 1.40
147 148 8.848474 ATATAGCTGTTTGAAAATATAGCCGT 57.152 30.769 0.00 0.00 31.82 5.68
148 149 5.897377 AGCTGTTTGAAAATATAGCCGTT 57.103 34.783 0.00 0.00 31.82 4.44
149 150 5.640732 AGCTGTTTGAAAATATAGCCGTTG 58.359 37.500 0.00 0.00 31.82 4.10
150 151 4.798387 GCTGTTTGAAAATATAGCCGTTGG 59.202 41.667 0.00 0.00 0.00 3.77
151 152 5.392595 GCTGTTTGAAAATATAGCCGTTGGA 60.393 40.000 0.00 0.00 0.00 3.53
152 153 6.576662 TGTTTGAAAATATAGCCGTTGGAA 57.423 33.333 0.00 0.00 0.00 3.53
153 154 7.164230 TGTTTGAAAATATAGCCGTTGGAAT 57.836 32.000 0.00 0.00 0.00 3.01
154 155 8.282455 TGTTTGAAAATATAGCCGTTGGAATA 57.718 30.769 0.00 0.00 0.00 1.75
155 156 8.908903 TGTTTGAAAATATAGCCGTTGGAATAT 58.091 29.630 0.00 0.00 0.00 1.28
158 159 9.562408 TTGAAAATATAGCCGTTGGAATATACA 57.438 29.630 0.00 0.00 0.00 2.29
159 160 8.995220 TGAAAATATAGCCGTTGGAATATACAC 58.005 33.333 0.00 0.00 0.00 2.90
160 161 7.591006 AAATATAGCCGTTGGAATATACACG 57.409 36.000 0.00 0.00 0.00 4.49
161 162 2.973694 AGCCGTTGGAATATACACGT 57.026 45.000 0.00 0.00 0.00 4.49
162 163 2.817901 AGCCGTTGGAATATACACGTC 58.182 47.619 0.00 0.00 0.00 4.34
163 164 1.862827 GCCGTTGGAATATACACGTCC 59.137 52.381 0.00 0.00 0.00 4.79
164 165 2.482490 GCCGTTGGAATATACACGTCCT 60.482 50.000 0.00 0.00 32.28 3.85
165 166 3.243501 GCCGTTGGAATATACACGTCCTA 60.244 47.826 0.00 0.00 32.28 2.94
166 167 4.737352 GCCGTTGGAATATACACGTCCTAA 60.737 45.833 0.00 0.00 32.28 2.69
167 168 5.535333 CCGTTGGAATATACACGTCCTAAT 58.465 41.667 0.00 0.00 32.28 1.73
168 169 5.987347 CCGTTGGAATATACACGTCCTAATT 59.013 40.000 0.00 0.00 32.28 1.40
169 170 6.480981 CCGTTGGAATATACACGTCCTAATTT 59.519 38.462 0.00 0.00 32.28 1.82
170 171 7.652909 CCGTTGGAATATACACGTCCTAATTTA 59.347 37.037 0.00 0.00 32.28 1.40
171 172 8.482429 CGTTGGAATATACACGTCCTAATTTAC 58.518 37.037 0.00 0.00 32.28 2.01
172 173 9.316730 GTTGGAATATACACGTCCTAATTTACA 57.683 33.333 0.00 0.00 32.28 2.41
173 174 8.876275 TGGAATATACACGTCCTAATTTACAC 57.124 34.615 0.00 0.00 32.28 2.90
174 175 7.648908 TGGAATATACACGTCCTAATTTACACG 59.351 37.037 0.00 0.00 38.24 4.49
175 176 7.649306 GGAATATACACGTCCTAATTTACACGT 59.351 37.037 3.35 3.35 46.05 4.49
176 177 8.931385 AATATACACGTCCTAATTTACACGTT 57.069 30.769 5.85 2.64 42.67 3.99
177 178 8.931385 ATATACACGTCCTAATTTACACGTTT 57.069 30.769 5.85 3.68 42.67 3.60
178 179 5.580911 ACACGTCCTAATTTACACGTTTC 57.419 39.130 5.85 0.00 42.67 2.78
179 180 5.049167 ACACGTCCTAATTTACACGTTTCA 58.951 37.500 5.85 0.00 42.67 2.69
180 181 5.050837 ACACGTCCTAATTTACACGTTTCAC 60.051 40.000 5.85 0.00 42.67 3.18
181 182 5.176223 CACGTCCTAATTTACACGTTTCACT 59.824 40.000 5.85 0.00 42.67 3.41
182 183 5.176223 ACGTCCTAATTTACACGTTTCACTG 59.824 40.000 0.00 0.00 42.67 3.66
183 184 5.403166 CGTCCTAATTTACACGTTTCACTGA 59.597 40.000 0.00 0.00 0.00 3.41
184 185 6.074195 CGTCCTAATTTACACGTTTCACTGAA 60.074 38.462 0.00 0.00 0.00 3.02
185 186 7.517101 CGTCCTAATTTACACGTTTCACTGAAA 60.517 37.037 0.00 0.00 0.00 2.69
186 187 8.124199 GTCCTAATTTACACGTTTCACTGAAAA 58.876 33.333 5.76 0.00 33.14 2.29
187 188 8.675504 TCCTAATTTACACGTTTCACTGAAAAA 58.324 29.630 5.76 0.00 33.14 1.94
188 189 8.739461 CCTAATTTACACGTTTCACTGAAAAAC 58.261 33.333 5.76 0.00 33.14 2.43
189 190 9.498307 CTAATTTACACGTTTCACTGAAAAACT 57.502 29.630 5.76 0.00 35.04 2.66
190 191 7.734538 ATTTACACGTTTCACTGAAAAACTG 57.265 32.000 5.76 4.73 35.04 3.16
191 192 6.483385 TTACACGTTTCACTGAAAAACTGA 57.517 33.333 5.76 0.00 35.04 3.41
192 193 5.365403 ACACGTTTCACTGAAAAACTGAA 57.635 34.783 5.76 0.00 35.04 3.02
193 194 5.764131 ACACGTTTCACTGAAAAACTGAAA 58.236 33.333 5.76 0.00 35.04 2.69
194 195 5.856455 ACACGTTTCACTGAAAAACTGAAAG 59.144 36.000 5.76 0.00 35.18 2.62
195 196 6.083630 CACGTTTCACTGAAAAACTGAAAGA 58.916 36.000 5.76 0.00 35.18 2.52
196 197 6.747280 CACGTTTCACTGAAAAACTGAAAGAT 59.253 34.615 5.76 0.00 35.18 2.40
197 198 6.747280 ACGTTTCACTGAAAAACTGAAAGATG 59.253 34.615 5.76 0.00 35.18 2.90
198 199 6.747280 CGTTTCACTGAAAAACTGAAAGATGT 59.253 34.615 5.76 0.00 35.18 3.06
199 200 7.908082 CGTTTCACTGAAAAACTGAAAGATGTA 59.092 33.333 5.76 0.00 35.18 2.29
200 201 9.736023 GTTTCACTGAAAAACTGAAAGATGTAT 57.264 29.630 5.76 0.00 35.18 2.29
213 214 9.686683 ACTGAAAGATGTATAAATTAGCAAGGT 57.313 29.630 0.00 0.00 37.43 3.50
214 215 9.941664 CTGAAAGATGTATAAATTAGCAAGGTG 57.058 33.333 0.00 0.00 34.07 4.00
215 216 9.461312 TGAAAGATGTATAAATTAGCAAGGTGT 57.539 29.630 0.00 0.00 0.00 4.16
224 225 6.861065 AAATTAGCAAGGTGTATATGGACG 57.139 37.500 0.00 0.00 0.00 4.79
225 226 5.546621 ATTAGCAAGGTGTATATGGACGT 57.453 39.130 0.00 0.00 0.00 4.34
226 227 3.179443 AGCAAGGTGTATATGGACGTG 57.821 47.619 0.00 0.00 0.00 4.49
227 228 2.500098 AGCAAGGTGTATATGGACGTGT 59.500 45.455 0.00 0.00 0.00 4.49
228 229 3.702548 AGCAAGGTGTATATGGACGTGTA 59.297 43.478 0.00 0.00 0.00 2.90
229 230 4.344102 AGCAAGGTGTATATGGACGTGTAT 59.656 41.667 0.00 0.00 0.00 2.29
230 231 5.537295 AGCAAGGTGTATATGGACGTGTATA 59.463 40.000 0.00 0.00 0.00 1.47
231 232 6.210784 AGCAAGGTGTATATGGACGTGTATAT 59.789 38.462 0.00 0.00 0.00 0.86
232 233 6.310467 GCAAGGTGTATATGGACGTGTATATG 59.690 42.308 0.00 0.00 0.00 1.78
233 234 6.525578 AGGTGTATATGGACGTGTATATGG 57.474 41.667 0.00 0.00 0.00 2.74
234 235 6.250711 AGGTGTATATGGACGTGTATATGGA 58.749 40.000 0.00 0.00 0.00 3.41
235 236 6.377429 AGGTGTATATGGACGTGTATATGGAG 59.623 42.308 0.00 0.00 0.00 3.86
236 237 6.376299 GGTGTATATGGACGTGTATATGGAGA 59.624 42.308 0.00 0.00 0.00 3.71
237 238 7.068348 GGTGTATATGGACGTGTATATGGAGAT 59.932 40.741 0.00 0.00 0.00 2.75
238 239 9.117183 GTGTATATGGACGTGTATATGGAGATA 57.883 37.037 0.00 0.00 0.00 1.98
239 240 9.862149 TGTATATGGACGTGTATATGGAGATAT 57.138 33.333 0.00 0.00 0.00 1.63
250 251 8.411991 TGTATATGGAGATATACACGTCCAAA 57.588 34.615 9.76 0.00 46.39 3.28
251 252 9.031537 TGTATATGGAGATATACACGTCCAAAT 57.968 33.333 9.76 0.00 46.39 2.32
252 253 9.517609 GTATATGGAGATATACACGTCCAAATC 57.482 37.037 0.00 0.00 43.45 2.17
253 254 6.672266 ATGGAGATATACACGTCCAAATCT 57.328 37.500 0.00 0.00 42.35 2.40
254 255 7.776618 ATGGAGATATACACGTCCAAATCTA 57.223 36.000 0.00 0.00 42.35 1.98
255 256 6.978338 TGGAGATATACACGTCCAAATCTAC 58.022 40.000 0.00 0.00 36.11 2.59
256 257 6.548251 TGGAGATATACACGTCCAAATCTACA 59.452 38.462 7.86 7.86 36.11 2.74
257 258 6.862090 GGAGATATACACGTCCAAATCTACAC 59.138 42.308 5.31 0.00 0.00 2.90
258 259 7.342769 AGATATACACGTCCAAATCTACACA 57.657 36.000 0.00 0.00 0.00 3.72
259 260 7.952671 AGATATACACGTCCAAATCTACACAT 58.047 34.615 0.00 0.00 0.00 3.21
260 261 8.421784 AGATATACACGTCCAAATCTACACATT 58.578 33.333 0.00 0.00 0.00 2.71
261 262 6.903883 ATACACGTCCAAATCTACACATTC 57.096 37.500 0.00 0.00 0.00 2.67
262 263 4.000988 ACACGTCCAAATCTACACATTCC 58.999 43.478 0.00 0.00 0.00 3.01
263 264 4.000325 CACGTCCAAATCTACACATTCCA 59.000 43.478 0.00 0.00 0.00 3.53
264 265 4.000988 ACGTCCAAATCTACACATTCCAC 58.999 43.478 0.00 0.00 0.00 4.02
265 266 4.253685 CGTCCAAATCTACACATTCCACT 58.746 43.478 0.00 0.00 0.00 4.00
266 267 5.046878 ACGTCCAAATCTACACATTCCACTA 60.047 40.000 0.00 0.00 0.00 2.74
267 268 5.872617 CGTCCAAATCTACACATTCCACTAA 59.127 40.000 0.00 0.00 0.00 2.24
268 269 6.370442 CGTCCAAATCTACACATTCCACTAAA 59.630 38.462 0.00 0.00 0.00 1.85
269 270 7.413000 CGTCCAAATCTACACATTCCACTAAAG 60.413 40.741 0.00 0.00 0.00 1.85
270 271 7.606456 GTCCAAATCTACACATTCCACTAAAGA 59.394 37.037 0.00 0.00 0.00 2.52
271 272 8.328758 TCCAAATCTACACATTCCACTAAAGAT 58.671 33.333 0.00 0.00 0.00 2.40
272 273 8.400947 CCAAATCTACACATTCCACTAAAGATG 58.599 37.037 0.00 0.00 0.00 2.90
273 274 7.559590 AATCTACACATTCCACTAAAGATGC 57.440 36.000 0.00 0.00 0.00 3.91
274 275 6.299805 TCTACACATTCCACTAAAGATGCT 57.700 37.500 0.00 0.00 0.00 3.79
275 276 6.341316 TCTACACATTCCACTAAAGATGCTC 58.659 40.000 0.00 0.00 0.00 4.26
276 277 5.171339 ACACATTCCACTAAAGATGCTCT 57.829 39.130 0.00 0.00 0.00 4.09
277 278 5.564550 ACACATTCCACTAAAGATGCTCTT 58.435 37.500 0.00 0.00 38.59 2.85
278 279 6.711277 ACACATTCCACTAAAGATGCTCTTA 58.289 36.000 0.00 0.00 35.27 2.10
279 280 7.341805 ACACATTCCACTAAAGATGCTCTTAT 58.658 34.615 0.00 0.00 35.27 1.73
280 281 7.281774 ACACATTCCACTAAAGATGCTCTTATG 59.718 37.037 0.00 0.00 35.27 1.90
281 282 7.496920 CACATTCCACTAAAGATGCTCTTATGA 59.503 37.037 0.00 0.00 35.27 2.15
282 283 8.049117 ACATTCCACTAAAGATGCTCTTATGAA 58.951 33.333 0.00 0.00 35.27 2.57
283 284 9.064706 CATTCCACTAAAGATGCTCTTATGAAT 57.935 33.333 0.00 0.00 35.27 2.57
323 324 1.604147 CCTTGGGGAAATCAACGCCC 61.604 60.000 0.00 0.00 41.28 6.13
430 588 0.822811 GCTCTGCTCTGATCTGACCA 59.177 55.000 0.00 0.00 0.00 4.02
432 590 2.546373 GCTCTGCTCTGATCTGACCATC 60.546 54.545 0.00 0.00 0.00 3.51
493 651 2.324477 GTTGATTCGCCGCATCCG 59.676 61.111 0.00 0.00 0.00 4.18
530 700 1.753078 ACTAGTCGCCGCATCCTCA 60.753 57.895 0.00 0.00 0.00 3.86
539 709 2.482374 GCATCCTCAACAGCGCAC 59.518 61.111 11.47 0.00 0.00 5.34
540 710 2.780643 CATCCTCAACAGCGCACG 59.219 61.111 11.47 1.85 0.00 5.34
541 711 1.737735 CATCCTCAACAGCGCACGA 60.738 57.895 11.47 0.00 0.00 4.35
542 712 1.086067 CATCCTCAACAGCGCACGAT 61.086 55.000 11.47 0.00 0.00 3.73
563 733 1.152312 AGTCCACGAGTGACCCCTT 60.152 57.895 4.59 0.00 0.00 3.95
565 735 1.911766 TCCACGAGTGACCCCTTCC 60.912 63.158 4.59 0.00 0.00 3.46
566 736 2.214216 CCACGAGTGACCCCTTCCA 61.214 63.158 4.59 0.00 0.00 3.53
568 738 2.214920 ACGAGTGACCCCTTCCACC 61.215 63.158 0.00 0.00 34.00 4.61
569 739 2.214216 CGAGTGACCCCTTCCACCA 61.214 63.158 0.00 0.00 34.00 4.17
576 777 2.325484 GACCCCTTCCACCACATTTTT 58.675 47.619 0.00 0.00 0.00 1.94
577 778 2.037121 GACCCCTTCCACCACATTTTTG 59.963 50.000 0.00 0.00 0.00 2.44
579 780 1.270785 CCCTTCCACCACATTTTTGCC 60.271 52.381 0.00 0.00 0.00 4.52
584 785 3.802866 TCCACCACATTTTTGCCTTTTC 58.197 40.909 0.00 0.00 0.00 2.29
609 810 0.251634 GCTCCTCTGTTTAGGCTGCT 59.748 55.000 0.00 0.00 36.51 4.24
611 812 0.532573 TCCTCTGTTTAGGCTGCTCG 59.467 55.000 0.00 0.00 36.51 5.03
612 813 0.247736 CCTCTGTTTAGGCTGCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
613 814 1.476891 CCTCTGTTTAGGCTGCTCGTA 59.523 52.381 0.00 0.00 0.00 3.43
614 815 2.480416 CCTCTGTTTAGGCTGCTCGTAG 60.480 54.545 0.00 0.00 0.00 3.51
615 816 2.164624 CTCTGTTTAGGCTGCTCGTAGT 59.835 50.000 0.00 0.00 0.00 2.73
616 817 3.349927 TCTGTTTAGGCTGCTCGTAGTA 58.650 45.455 0.00 0.00 0.00 1.82
617 818 3.952323 TCTGTTTAGGCTGCTCGTAGTAT 59.048 43.478 0.00 0.00 0.00 2.12
618 819 4.401519 TCTGTTTAGGCTGCTCGTAGTATT 59.598 41.667 0.00 0.00 0.00 1.89
619 820 4.679662 TGTTTAGGCTGCTCGTAGTATTC 58.320 43.478 0.00 0.00 0.00 1.75
620 821 4.049869 GTTTAGGCTGCTCGTAGTATTCC 58.950 47.826 0.00 0.00 0.00 3.01
621 822 2.074729 AGGCTGCTCGTAGTATTCCT 57.925 50.000 0.00 0.00 0.00 3.36
623 824 1.000052 GGCTGCTCGTAGTATTCCTCC 60.000 57.143 0.00 0.00 0.00 4.30
626 827 0.597072 GCTCGTAGTATTCCTCCCGG 59.403 60.000 0.00 0.00 0.00 5.73
627 828 1.978454 CTCGTAGTATTCCTCCCGGT 58.022 55.000 0.00 0.00 0.00 5.28
628 829 2.305009 CTCGTAGTATTCCTCCCGGTT 58.695 52.381 0.00 0.00 0.00 4.44
629 830 2.292845 CTCGTAGTATTCCTCCCGGTTC 59.707 54.545 0.00 0.00 0.00 3.62
630 831 2.092212 TCGTAGTATTCCTCCCGGTTCT 60.092 50.000 0.00 0.00 0.00 3.01
631 832 2.692041 CGTAGTATTCCTCCCGGTTCTT 59.308 50.000 0.00 0.00 0.00 2.52
632 833 3.131755 CGTAGTATTCCTCCCGGTTCTTT 59.868 47.826 0.00 0.00 0.00 2.52
633 834 4.382362 CGTAGTATTCCTCCCGGTTCTTTT 60.382 45.833 0.00 0.00 0.00 2.27
636 837 2.561478 TTCCTCCCGGTTCTTTTCAG 57.439 50.000 0.00 0.00 0.00 3.02
637 838 1.430992 TCCTCCCGGTTCTTTTCAGT 58.569 50.000 0.00 0.00 0.00 3.41
639 840 1.348036 CCTCCCGGTTCTTTTCAGTCT 59.652 52.381 0.00 0.00 0.00 3.24
640 841 2.417719 CTCCCGGTTCTTTTCAGTCTG 58.582 52.381 0.00 0.00 0.00 3.51
641 842 0.875059 CCCGGTTCTTTTCAGTCTGC 59.125 55.000 0.00 0.00 0.00 4.26
642 843 1.593196 CCGGTTCTTTTCAGTCTGCA 58.407 50.000 0.00 0.00 0.00 4.41
643 844 2.154462 CCGGTTCTTTTCAGTCTGCAT 58.846 47.619 0.00 0.00 0.00 3.96
644 845 3.334691 CCGGTTCTTTTCAGTCTGCATA 58.665 45.455 0.00 0.00 0.00 3.14
645 846 3.941483 CCGGTTCTTTTCAGTCTGCATAT 59.059 43.478 0.00 0.00 0.00 1.78
646 847 5.116180 CCGGTTCTTTTCAGTCTGCATATA 58.884 41.667 0.00 0.00 0.00 0.86
647 848 5.584649 CCGGTTCTTTTCAGTCTGCATATAA 59.415 40.000 0.00 0.00 0.00 0.98
649 850 7.201732 CCGGTTCTTTTCAGTCTGCATATAAAT 60.202 37.037 0.00 0.00 0.00 1.40
650 851 8.184192 CGGTTCTTTTCAGTCTGCATATAAATT 58.816 33.333 0.00 0.00 0.00 1.82
731 932 9.669887 ACATTTACAATGCCAAATCAATATTGT 57.330 25.926 14.97 0.00 42.59 2.71
827 1747 5.906113 TTTGGTCAAAGTTTGTAAGAGCA 57.094 34.783 15.08 8.83 35.23 4.26
828 1748 4.893424 TGGTCAAAGTTTGTAAGAGCAC 57.107 40.909 15.08 4.40 32.48 4.40
829 1749 4.523083 TGGTCAAAGTTTGTAAGAGCACT 58.477 39.130 15.08 0.00 32.48 4.40
830 1750 4.335315 TGGTCAAAGTTTGTAAGAGCACTG 59.665 41.667 15.08 0.00 32.48 3.66
831 1751 4.261197 GGTCAAAGTTTGTAAGAGCACTGG 60.261 45.833 15.08 0.00 0.00 4.00
832 1752 4.574828 GTCAAAGTTTGTAAGAGCACTGGA 59.425 41.667 15.08 0.00 0.00 3.86
834 1754 4.689612 AAGTTTGTAAGAGCACTGGAGA 57.310 40.909 0.00 0.00 0.00 3.71
835 1755 4.264460 AGTTTGTAAGAGCACTGGAGAG 57.736 45.455 0.00 0.00 0.00 3.20
836 1756 3.898123 AGTTTGTAAGAGCACTGGAGAGA 59.102 43.478 0.00 0.00 0.00 3.10
840 1949 4.011023 TGTAAGAGCACTGGAGAGAGTAC 58.989 47.826 0.00 0.00 0.00 2.73
849 1958 5.415077 GCACTGGAGAGAGTACTAACTAACA 59.585 44.000 0.00 1.20 35.56 2.41
896 2006 3.699894 AGCTCCCCTGCTCACACG 61.700 66.667 0.00 0.00 39.34 4.49
905 2018 1.217585 CTGCTCACACGACACACCAG 61.218 60.000 0.00 0.00 0.00 4.00
937 2061 3.017581 AGCATCCCACACTCCCCC 61.018 66.667 0.00 0.00 0.00 5.40
1272 2417 2.531206 GACAAGATGCAGGTCTACGAC 58.469 52.381 0.00 0.00 0.00 4.34
1282 2427 2.046988 TCTACGACGGCCTCGACA 60.047 61.111 25.01 14.07 46.14 4.35
1815 2964 2.899339 GGCAAGATCCAGCGGCTC 60.899 66.667 0.00 0.00 0.00 4.70
1816 2965 2.188994 GCAAGATCCAGCGGCTCT 59.811 61.111 0.00 0.00 28.42 4.09
2067 3216 3.722780 CCGTCGTCTAGCTAATACAAACG 59.277 47.826 16.25 16.25 0.00 3.60
2068 3217 4.494690 CCGTCGTCTAGCTAATACAAACGA 60.495 45.833 20.78 14.54 35.55 3.85
2069 3218 5.023920 CGTCGTCTAGCTAATACAAACGAA 58.976 41.667 17.33 3.05 39.10 3.85
2091 3240 5.052693 ACCTCCCTACATACGTACATACA 57.947 43.478 0.00 0.00 0.00 2.29
2094 3243 6.183360 ACCTCCCTACATACGTACATACAAAC 60.183 42.308 0.00 0.00 0.00 2.93
2095 3244 6.183360 CCTCCCTACATACGTACATACAAACA 60.183 42.308 0.00 0.00 0.00 2.83
2097 3246 7.259882 TCCCTACATACGTACATACAAACAAG 58.740 38.462 0.00 0.00 0.00 3.16
2102 3256 8.014322 ACATACGTACATACAAACAAGACAAG 57.986 34.615 0.00 0.00 0.00 3.16
2104 3258 5.054477 ACGTACATACAAACAAGACAAGCT 58.946 37.500 0.00 0.00 0.00 3.74
2112 3266 0.657840 ACAAGACAAGCTGCACGAAC 59.342 50.000 1.02 0.00 0.00 3.95
2113 3267 0.383491 CAAGACAAGCTGCACGAACG 60.383 55.000 1.02 0.00 0.00 3.95
2114 3268 1.498865 AAGACAAGCTGCACGAACGG 61.499 55.000 1.02 0.00 0.00 4.44
2137 3291 1.115467 CTCCCCGAACTAGCTGTCAT 58.885 55.000 0.00 0.00 0.00 3.06
2142 3296 1.473965 CCGAACTAGCTGTCATGCCAT 60.474 52.381 0.00 0.00 0.00 4.40
2146 3300 1.071385 ACTAGCTGTCATGCCATAGCC 59.929 52.381 0.00 0.00 38.69 3.93
2147 3301 0.397941 TAGCTGTCATGCCATAGCCC 59.602 55.000 0.00 0.00 38.69 5.19
2288 3445 1.203928 CACAAGCTGACCGATCGATC 58.796 55.000 18.66 15.68 0.00 3.69
2311 3468 4.450419 CGACTCTGCTTCATTTTCACTTCT 59.550 41.667 0.00 0.00 0.00 2.85
2371 3528 2.062519 GTGACTCGAGAGTTTTGAGGC 58.937 52.381 21.68 0.00 44.66 4.70
2413 3570 2.515290 GGTTAATCGGGGTGGCCG 60.515 66.667 0.00 0.00 0.00 6.13
2525 3684 6.540914 TCGTAATCCGAGATTAATTTTTGGCT 59.459 34.615 7.61 0.00 41.60 4.75
2656 3821 0.529378 CCAAATGCAGAGTGGCTTCC 59.471 55.000 0.00 0.00 34.04 3.46
2734 3899 4.478206 TTGACCAAATTTCCACAGCAAA 57.522 36.364 0.00 0.00 0.00 3.68
2784 3952 5.418840 AGAAAATATCCACATCCGCAACTTT 59.581 36.000 0.00 0.00 0.00 2.66
2802 3970 8.095169 CGCAACTTTAGAGATATATAGGGGTTT 58.905 37.037 0.00 0.00 0.00 3.27
2843 4011 1.147473 GCCTTGCCAAAATTTCACGG 58.853 50.000 0.00 0.00 0.00 4.94
2922 4090 2.327200 GGCAACGATTTAGTAGGGCT 57.673 50.000 0.00 0.00 0.00 5.19
2947 4115 1.611491 TCGGCAAAATCCAAACAGGTC 59.389 47.619 0.00 0.00 39.02 3.85
2953 4121 5.394115 GGCAAAATCCAAACAGGTCGATAAT 60.394 40.000 0.00 0.00 39.02 1.28
2955 4123 6.691388 GCAAAATCCAAACAGGTCGATAATAC 59.309 38.462 0.00 0.00 39.02 1.89
3008 4176 7.700656 ACTTATATTTAACGAATTGTGCCTTGC 59.299 33.333 0.00 0.00 0.00 4.01
3018 4186 5.164061 CGAATTGTGCCTTGCAAATCTTAAC 60.164 40.000 0.00 0.00 41.47 2.01
3027 4195 4.759516 TGCAAATCTTAACGAAAGGACC 57.240 40.909 0.00 0.00 35.75 4.46
3028 4196 3.504520 TGCAAATCTTAACGAAAGGACCC 59.495 43.478 0.00 0.00 35.75 4.46
3029 4197 3.119602 GCAAATCTTAACGAAAGGACCCC 60.120 47.826 0.00 0.00 35.75 4.95
3044 4212 2.509964 GGACCCCCACTACAAATCTGAT 59.490 50.000 0.00 0.00 0.00 2.90
3049 4217 4.194640 CCCCACTACAAATCTGATGTCAG 58.805 47.826 3.61 3.61 45.08 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.892852 ACAATGAACACATCCACTTGGG 59.107 45.455 0.00 0.00 35.41 4.12
2 3 3.318839 ACACAATGAACACATCCACTTGG 59.681 43.478 0.00 0.00 0.00 3.61
3 4 4.572985 ACACAATGAACACATCCACTTG 57.427 40.909 0.00 0.00 0.00 3.16
4 5 4.737352 GCAACACAATGAACACATCCACTT 60.737 41.667 0.00 0.00 0.00 3.16
6 7 3.052036 GCAACACAATGAACACATCCAC 58.948 45.455 0.00 0.00 0.00 4.02
7 8 2.287487 CGCAACACAATGAACACATCCA 60.287 45.455 0.00 0.00 0.00 3.41
8 9 2.287547 ACGCAACACAATGAACACATCC 60.288 45.455 0.00 0.00 0.00 3.51
9 10 2.720578 CACGCAACACAATGAACACATC 59.279 45.455 0.00 0.00 0.00 3.06
10 11 2.357323 TCACGCAACACAATGAACACAT 59.643 40.909 0.00 0.00 0.00 3.21
11 12 1.740025 TCACGCAACACAATGAACACA 59.260 42.857 0.00 0.00 0.00 3.72
12 13 2.031560 TCTCACGCAACACAATGAACAC 59.968 45.455 0.00 0.00 0.00 3.32
13 14 2.284190 TCTCACGCAACACAATGAACA 58.716 42.857 0.00 0.00 0.00 3.18
14 15 3.332761 TTCTCACGCAACACAATGAAC 57.667 42.857 0.00 0.00 0.00 3.18
15 16 3.690422 GTTTCTCACGCAACACAATGAA 58.310 40.909 0.00 0.00 0.00 2.57
16 17 2.286125 CGTTTCTCACGCAACACAATGA 60.286 45.455 0.00 0.00 43.37 2.57
17 18 2.036217 CGTTTCTCACGCAACACAATG 58.964 47.619 0.00 0.00 43.37 2.82
18 19 2.383298 CGTTTCTCACGCAACACAAT 57.617 45.000 0.00 0.00 43.37 2.71
19 20 3.887777 CGTTTCTCACGCAACACAA 57.112 47.368 0.00 0.00 43.37 3.33
28 29 8.596380 CACCTAGATTTTTCTATCGTTTCTCAC 58.404 37.037 0.00 0.00 0.00 3.51
29 30 8.528643 TCACCTAGATTTTTCTATCGTTTCTCA 58.471 33.333 0.00 0.00 0.00 3.27
30 31 8.928270 TCACCTAGATTTTTCTATCGTTTCTC 57.072 34.615 0.00 0.00 0.00 2.87
31 32 8.750298 TCTCACCTAGATTTTTCTATCGTTTCT 58.250 33.333 0.00 0.00 0.00 2.52
32 33 8.928270 TCTCACCTAGATTTTTCTATCGTTTC 57.072 34.615 0.00 0.00 0.00 2.78
33 34 9.372369 CTTCTCACCTAGATTTTTCTATCGTTT 57.628 33.333 0.00 0.00 33.05 3.60
34 35 8.750298 TCTTCTCACCTAGATTTTTCTATCGTT 58.250 33.333 0.00 0.00 33.05 3.85
35 36 8.294954 TCTTCTCACCTAGATTTTTCTATCGT 57.705 34.615 0.00 0.00 33.05 3.73
36 37 8.625651 TCTCTTCTCACCTAGATTTTTCTATCG 58.374 37.037 0.00 0.00 33.05 2.92
39 40 9.315363 ACTTCTCTTCTCACCTAGATTTTTCTA 57.685 33.333 0.00 0.00 33.05 2.10
40 41 8.093927 CACTTCTCTTCTCACCTAGATTTTTCT 58.906 37.037 0.00 0.00 33.05 2.52
41 42 7.875554 ACACTTCTCTTCTCACCTAGATTTTTC 59.124 37.037 0.00 0.00 33.05 2.29
42 43 7.659390 CACACTTCTCTTCTCACCTAGATTTTT 59.341 37.037 0.00 0.00 33.05 1.94
43 44 7.158021 CACACTTCTCTTCTCACCTAGATTTT 58.842 38.462 0.00 0.00 33.05 1.82
44 45 6.696411 CACACTTCTCTTCTCACCTAGATTT 58.304 40.000 0.00 0.00 33.05 2.17
45 46 5.337169 GCACACTTCTCTTCTCACCTAGATT 60.337 44.000 0.00 0.00 33.05 2.40
46 47 4.159506 GCACACTTCTCTTCTCACCTAGAT 59.840 45.833 0.00 0.00 33.05 1.98
47 48 3.508012 GCACACTTCTCTTCTCACCTAGA 59.492 47.826 0.00 0.00 0.00 2.43
48 49 3.509575 AGCACACTTCTCTTCTCACCTAG 59.490 47.826 0.00 0.00 0.00 3.02
49 50 3.256879 CAGCACACTTCTCTTCTCACCTA 59.743 47.826 0.00 0.00 0.00 3.08
50 51 2.036992 CAGCACACTTCTCTTCTCACCT 59.963 50.000 0.00 0.00 0.00 4.00
51 52 2.411904 CAGCACACTTCTCTTCTCACC 58.588 52.381 0.00 0.00 0.00 4.02
52 53 2.036475 TCCAGCACACTTCTCTTCTCAC 59.964 50.000 0.00 0.00 0.00 3.51
53 54 2.319844 TCCAGCACACTTCTCTTCTCA 58.680 47.619 0.00 0.00 0.00 3.27
54 55 3.006323 TCTTCCAGCACACTTCTCTTCTC 59.994 47.826 0.00 0.00 0.00 2.87
55 56 2.968574 TCTTCCAGCACACTTCTCTTCT 59.031 45.455 0.00 0.00 0.00 2.85
56 57 3.393089 TCTTCCAGCACACTTCTCTTC 57.607 47.619 0.00 0.00 0.00 2.87
57 58 3.072184 ACATCTTCCAGCACACTTCTCTT 59.928 43.478 0.00 0.00 0.00 2.85
58 59 2.636893 ACATCTTCCAGCACACTTCTCT 59.363 45.455 0.00 0.00 0.00 3.10
59 60 2.740981 CACATCTTCCAGCACACTTCTC 59.259 50.000 0.00 0.00 0.00 2.87
60 61 2.551721 CCACATCTTCCAGCACACTTCT 60.552 50.000 0.00 0.00 0.00 2.85
61 62 1.808945 CCACATCTTCCAGCACACTTC 59.191 52.381 0.00 0.00 0.00 3.01
62 63 1.143684 ACCACATCTTCCAGCACACTT 59.856 47.619 0.00 0.00 0.00 3.16
63 64 0.767375 ACCACATCTTCCAGCACACT 59.233 50.000 0.00 0.00 0.00 3.55
64 65 2.350522 CTACCACATCTTCCAGCACAC 58.649 52.381 0.00 0.00 0.00 3.82
65 66 1.278985 CCTACCACATCTTCCAGCACA 59.721 52.381 0.00 0.00 0.00 4.57
66 67 1.555075 TCCTACCACATCTTCCAGCAC 59.445 52.381 0.00 0.00 0.00 4.40
67 68 1.833630 CTCCTACCACATCTTCCAGCA 59.166 52.381 0.00 0.00 0.00 4.41
68 69 1.834263 ACTCCTACCACATCTTCCAGC 59.166 52.381 0.00 0.00 0.00 4.85
69 70 2.169352 CCACTCCTACCACATCTTCCAG 59.831 54.545 0.00 0.00 0.00 3.86
70 71 2.187958 CCACTCCTACCACATCTTCCA 58.812 52.381 0.00 0.00 0.00 3.53
71 72 2.188817 ACCACTCCTACCACATCTTCC 58.811 52.381 0.00 0.00 0.00 3.46
72 73 3.983044 AACCACTCCTACCACATCTTC 57.017 47.619 0.00 0.00 0.00 2.87
73 74 7.691993 ATATAAACCACTCCTACCACATCTT 57.308 36.000 0.00 0.00 0.00 2.40
74 75 8.232412 TCTATATAAACCACTCCTACCACATCT 58.768 37.037 0.00 0.00 0.00 2.90
75 76 8.418597 TCTATATAAACCACTCCTACCACATC 57.581 38.462 0.00 0.00 0.00 3.06
76 77 8.974292 ATCTATATAAACCACTCCTACCACAT 57.026 34.615 0.00 0.00 0.00 3.21
77 78 7.176165 CGATCTATATAAACCACTCCTACCACA 59.824 40.741 0.00 0.00 0.00 4.17
78 79 7.362747 CCGATCTATATAAACCACTCCTACCAC 60.363 44.444 0.00 0.00 0.00 4.16
79 80 6.662234 CCGATCTATATAAACCACTCCTACCA 59.338 42.308 0.00 0.00 0.00 3.25
80 81 6.888632 TCCGATCTATATAAACCACTCCTACC 59.111 42.308 0.00 0.00 0.00 3.18
81 82 7.934855 TCCGATCTATATAAACCACTCCTAC 57.065 40.000 0.00 0.00 0.00 3.18
82 83 8.945195 TTTCCGATCTATATAAACCACTCCTA 57.055 34.615 0.00 0.00 0.00 2.94
83 84 7.850935 TTTCCGATCTATATAAACCACTCCT 57.149 36.000 0.00 0.00 0.00 3.69
87 88 8.827677 GCCATATTTCCGATCTATATAAACCAC 58.172 37.037 0.00 0.00 0.00 4.16
88 89 7.990886 GGCCATATTTCCGATCTATATAAACCA 59.009 37.037 0.00 0.00 0.00 3.67
89 90 8.379457 GGCCATATTTCCGATCTATATAAACC 57.621 38.462 0.00 0.00 0.00 3.27
103 104 5.722021 ATATTTCCAACGGCCATATTTCC 57.278 39.130 2.24 0.00 0.00 3.13
104 105 6.151144 AGCTATATTTCCAACGGCCATATTTC 59.849 38.462 2.24 0.00 0.00 2.17
105 106 6.010219 AGCTATATTTCCAACGGCCATATTT 58.990 36.000 2.24 0.00 0.00 1.40
106 107 5.415701 CAGCTATATTTCCAACGGCCATATT 59.584 40.000 2.24 0.00 0.00 1.28
107 108 4.943705 CAGCTATATTTCCAACGGCCATAT 59.056 41.667 2.24 0.00 0.00 1.78
108 109 4.202419 ACAGCTATATTTCCAACGGCCATA 60.202 41.667 2.24 0.00 0.00 2.74
109 110 3.149196 CAGCTATATTTCCAACGGCCAT 58.851 45.455 2.24 0.00 0.00 4.40
110 111 2.092646 ACAGCTATATTTCCAACGGCCA 60.093 45.455 2.24 0.00 0.00 5.36
111 112 2.572290 ACAGCTATATTTCCAACGGCC 58.428 47.619 0.00 0.00 0.00 6.13
112 113 4.095782 TCAAACAGCTATATTTCCAACGGC 59.904 41.667 0.00 0.00 0.00 5.68
113 114 5.811399 TCAAACAGCTATATTTCCAACGG 57.189 39.130 0.00 0.00 0.00 4.44
114 115 8.687824 ATTTTCAAACAGCTATATTTCCAACG 57.312 30.769 0.00 0.00 0.00 4.10
121 122 9.284968 ACGGCTATATTTTCAAACAGCTATATT 57.715 29.630 0.00 0.00 0.00 1.28
122 123 8.848474 ACGGCTATATTTTCAAACAGCTATAT 57.152 30.769 0.00 0.00 0.00 0.86
123 124 8.556194 CAACGGCTATATTTTCAAACAGCTATA 58.444 33.333 0.00 0.00 0.00 1.31
124 125 7.417612 CAACGGCTATATTTTCAAACAGCTAT 58.582 34.615 0.00 0.00 0.00 2.97
125 126 6.183360 CCAACGGCTATATTTTCAAACAGCTA 60.183 38.462 0.00 0.00 0.00 3.32
126 127 5.393027 CCAACGGCTATATTTTCAAACAGCT 60.393 40.000 0.00 0.00 0.00 4.24
127 128 4.798387 CCAACGGCTATATTTTCAAACAGC 59.202 41.667 0.00 0.00 0.00 4.40
128 129 6.189677 TCCAACGGCTATATTTTCAAACAG 57.810 37.500 0.00 0.00 0.00 3.16
129 130 6.576662 TTCCAACGGCTATATTTTCAAACA 57.423 33.333 0.00 0.00 0.00 2.83
132 133 9.562408 TGTATATTCCAACGGCTATATTTTCAA 57.438 29.630 0.00 0.00 0.00 2.69
133 134 8.995220 GTGTATATTCCAACGGCTATATTTTCA 58.005 33.333 0.00 0.00 0.00 2.69
134 135 8.166706 CGTGTATATTCCAACGGCTATATTTTC 58.833 37.037 0.00 0.00 32.55 2.29
135 136 7.658575 ACGTGTATATTCCAACGGCTATATTTT 59.341 33.333 0.00 0.00 40.25 1.82
136 137 7.156673 ACGTGTATATTCCAACGGCTATATTT 58.843 34.615 0.00 0.00 40.25 1.40
137 138 6.694447 ACGTGTATATTCCAACGGCTATATT 58.306 36.000 0.00 0.00 40.25 1.28
138 139 6.276832 ACGTGTATATTCCAACGGCTATAT 57.723 37.500 0.00 0.00 40.25 0.86
139 140 5.335897 GGACGTGTATATTCCAACGGCTATA 60.336 44.000 0.00 0.00 43.55 1.31
140 141 4.553323 GACGTGTATATTCCAACGGCTAT 58.447 43.478 0.00 0.00 40.87 2.97
141 142 3.243501 GGACGTGTATATTCCAACGGCTA 60.244 47.826 0.00 0.00 43.55 3.93
142 143 2.482490 GGACGTGTATATTCCAACGGCT 60.482 50.000 0.00 0.00 43.55 5.52
143 144 1.862827 GGACGTGTATATTCCAACGGC 59.137 52.381 0.00 0.00 43.32 5.68
144 145 3.447918 AGGACGTGTATATTCCAACGG 57.552 47.619 0.00 0.00 40.25 4.44
145 146 7.473027 AAATTAGGACGTGTATATTCCAACG 57.527 36.000 0.00 0.00 41.64 4.10
146 147 9.316730 TGTAAATTAGGACGTGTATATTCCAAC 57.683 33.333 0.00 0.00 0.00 3.77
147 148 9.316730 GTGTAAATTAGGACGTGTATATTCCAA 57.683 33.333 0.00 0.00 0.00 3.53
148 149 7.648908 CGTGTAAATTAGGACGTGTATATTCCA 59.351 37.037 0.00 0.00 0.00 3.53
149 150 7.649306 ACGTGTAAATTAGGACGTGTATATTCC 59.351 37.037 8.73 0.00 43.08 3.01
150 151 8.566008 ACGTGTAAATTAGGACGTGTATATTC 57.434 34.615 8.73 0.00 43.08 1.75
151 152 8.931385 AACGTGTAAATTAGGACGTGTATATT 57.069 30.769 9.90 0.00 43.88 1.28
152 153 8.931385 AAACGTGTAAATTAGGACGTGTATAT 57.069 30.769 9.90 0.00 43.88 0.86
153 154 8.026026 TGAAACGTGTAAATTAGGACGTGTATA 58.974 33.333 9.90 0.00 43.88 1.47
154 155 6.867816 TGAAACGTGTAAATTAGGACGTGTAT 59.132 34.615 9.90 2.42 43.88 2.29
155 156 6.143758 GTGAAACGTGTAAATTAGGACGTGTA 59.856 38.462 9.90 0.35 43.88 2.90
156 157 5.049167 TGAAACGTGTAAATTAGGACGTGT 58.951 37.500 9.90 5.71 43.88 4.49
157 158 5.176223 AGTGAAACGTGTAAATTAGGACGTG 59.824 40.000 9.90 0.00 43.88 4.49
158 159 5.176223 CAGTGAAACGTGTAAATTAGGACGT 59.824 40.000 4.79 4.79 46.46 4.34
159 160 5.403166 TCAGTGAAACGTGTAAATTAGGACG 59.597 40.000 0.00 0.00 45.86 4.79
160 161 6.774354 TCAGTGAAACGTGTAAATTAGGAC 57.226 37.500 0.00 0.00 45.86 3.85
161 162 7.789273 TTTCAGTGAAACGTGTAAATTAGGA 57.211 32.000 14.35 0.00 45.86 2.94
162 163 8.739461 GTTTTTCAGTGAAACGTGTAAATTAGG 58.261 33.333 17.85 0.00 45.86 2.69
163 164 9.498307 AGTTTTTCAGTGAAACGTGTAAATTAG 57.502 29.630 17.85 0.00 45.86 1.73
164 165 9.279904 CAGTTTTTCAGTGAAACGTGTAAATTA 57.720 29.630 17.85 0.00 45.86 1.40
165 166 8.024285 TCAGTTTTTCAGTGAAACGTGTAAATT 58.976 29.630 17.85 3.11 45.86 1.82
166 167 7.531716 TCAGTTTTTCAGTGAAACGTGTAAAT 58.468 30.769 17.85 6.01 45.86 1.40
167 168 6.900189 TCAGTTTTTCAGTGAAACGTGTAAA 58.100 32.000 17.85 5.98 45.86 2.01
168 169 6.483385 TCAGTTTTTCAGTGAAACGTGTAA 57.517 33.333 17.85 6.68 45.86 2.41
169 170 6.483385 TTCAGTTTTTCAGTGAAACGTGTA 57.517 33.333 17.85 6.95 45.86 2.90
170 171 5.365403 TTCAGTTTTTCAGTGAAACGTGT 57.635 34.783 17.85 0.89 45.86 4.49
171 172 6.083630 TCTTTCAGTTTTTCAGTGAAACGTG 58.916 36.000 17.85 14.38 45.98 4.49
172 173 6.249035 TCTTTCAGTTTTTCAGTGAAACGT 57.751 33.333 17.85 3.00 45.98 3.99
173 174 6.747280 ACATCTTTCAGTTTTTCAGTGAAACG 59.253 34.615 17.85 7.36 45.98 3.60
174 175 9.736023 ATACATCTTTCAGTTTTTCAGTGAAAC 57.264 29.630 17.85 8.60 45.98 2.78
187 188 9.686683 ACCTTGCTAATTTATACATCTTTCAGT 57.313 29.630 0.00 0.00 0.00 3.41
188 189 9.941664 CACCTTGCTAATTTATACATCTTTCAG 57.058 33.333 0.00 0.00 0.00 3.02
189 190 9.461312 ACACCTTGCTAATTTATACATCTTTCA 57.539 29.630 0.00 0.00 0.00 2.69
198 199 9.647797 CGTCCATATACACCTTGCTAATTTATA 57.352 33.333 0.00 0.00 0.00 0.98
199 200 8.154856 ACGTCCATATACACCTTGCTAATTTAT 58.845 33.333 0.00 0.00 0.00 1.40
200 201 7.439955 CACGTCCATATACACCTTGCTAATTTA 59.560 37.037 0.00 0.00 0.00 1.40
201 202 6.260050 CACGTCCATATACACCTTGCTAATTT 59.740 38.462 0.00 0.00 0.00 1.82
202 203 5.758296 CACGTCCATATACACCTTGCTAATT 59.242 40.000 0.00 0.00 0.00 1.40
203 204 5.163343 ACACGTCCATATACACCTTGCTAAT 60.163 40.000 0.00 0.00 0.00 1.73
204 205 4.160814 ACACGTCCATATACACCTTGCTAA 59.839 41.667 0.00 0.00 0.00 3.09
205 206 3.702548 ACACGTCCATATACACCTTGCTA 59.297 43.478 0.00 0.00 0.00 3.49
206 207 2.500098 ACACGTCCATATACACCTTGCT 59.500 45.455 0.00 0.00 0.00 3.91
207 208 2.901249 ACACGTCCATATACACCTTGC 58.099 47.619 0.00 0.00 0.00 4.01
208 209 6.811665 CCATATACACGTCCATATACACCTTG 59.188 42.308 0.00 0.00 0.00 3.61
209 210 6.722590 TCCATATACACGTCCATATACACCTT 59.277 38.462 0.00 0.00 0.00 3.50
210 211 6.250711 TCCATATACACGTCCATATACACCT 58.749 40.000 0.00 0.00 0.00 4.00
211 212 6.376299 TCTCCATATACACGTCCATATACACC 59.624 42.308 0.00 0.00 0.00 4.16
212 213 7.387119 TCTCCATATACACGTCCATATACAC 57.613 40.000 0.00 0.00 0.00 2.90
213 214 9.862149 ATATCTCCATATACACGTCCATATACA 57.138 33.333 0.00 0.00 0.00 2.29
216 217 9.862149 TGTATATCTCCATATACACGTCCATAT 57.138 33.333 9.74 0.00 46.74 1.78
226 227 9.517609 GATTTGGACGTGTATATCTCCATATAC 57.482 37.037 0.00 5.52 44.26 1.47
227 228 9.475620 AGATTTGGACGTGTATATCTCCATATA 57.524 33.333 0.00 0.00 32.75 0.86
228 229 8.367660 AGATTTGGACGTGTATATCTCCATAT 57.632 34.615 0.00 0.00 32.75 1.78
229 230 7.776618 AGATTTGGACGTGTATATCTCCATA 57.223 36.000 0.00 0.00 32.75 2.74
230 231 6.672266 AGATTTGGACGTGTATATCTCCAT 57.328 37.500 0.00 0.00 32.75 3.41
231 232 6.548251 TGTAGATTTGGACGTGTATATCTCCA 59.452 38.462 0.00 0.00 0.00 3.86
232 233 6.862090 GTGTAGATTTGGACGTGTATATCTCC 59.138 42.308 0.00 0.00 0.00 3.71
233 234 7.423199 TGTGTAGATTTGGACGTGTATATCTC 58.577 38.462 0.00 0.00 0.00 2.75
234 235 7.342769 TGTGTAGATTTGGACGTGTATATCT 57.657 36.000 0.00 0.00 0.00 1.98
235 236 8.589335 AATGTGTAGATTTGGACGTGTATATC 57.411 34.615 0.00 0.00 0.00 1.63
236 237 7.656137 GGAATGTGTAGATTTGGACGTGTATAT 59.344 37.037 0.00 0.00 0.00 0.86
237 238 6.982141 GGAATGTGTAGATTTGGACGTGTATA 59.018 38.462 0.00 0.00 0.00 1.47
238 239 5.815740 GGAATGTGTAGATTTGGACGTGTAT 59.184 40.000 0.00 0.00 0.00 2.29
239 240 5.172934 GGAATGTGTAGATTTGGACGTGTA 58.827 41.667 0.00 0.00 0.00 2.90
240 241 4.000988 GGAATGTGTAGATTTGGACGTGT 58.999 43.478 0.00 0.00 0.00 4.49
241 242 4.000325 TGGAATGTGTAGATTTGGACGTG 59.000 43.478 0.00 0.00 0.00 4.49
242 243 4.000988 GTGGAATGTGTAGATTTGGACGT 58.999 43.478 0.00 0.00 0.00 4.34
243 244 4.253685 AGTGGAATGTGTAGATTTGGACG 58.746 43.478 0.00 0.00 0.00 4.79
244 245 7.606456 TCTTTAGTGGAATGTGTAGATTTGGAC 59.394 37.037 0.00 0.00 0.00 4.02
245 246 7.685481 TCTTTAGTGGAATGTGTAGATTTGGA 58.315 34.615 0.00 0.00 0.00 3.53
246 247 7.921786 TCTTTAGTGGAATGTGTAGATTTGG 57.078 36.000 0.00 0.00 0.00 3.28
247 248 7.912250 GCATCTTTAGTGGAATGTGTAGATTTG 59.088 37.037 0.00 0.00 0.00 2.32
248 249 7.831193 AGCATCTTTAGTGGAATGTGTAGATTT 59.169 33.333 0.00 0.00 0.00 2.17
249 250 7.341805 AGCATCTTTAGTGGAATGTGTAGATT 58.658 34.615 0.00 0.00 0.00 2.40
250 251 6.893583 AGCATCTTTAGTGGAATGTGTAGAT 58.106 36.000 0.00 0.00 0.00 1.98
251 252 6.299805 AGCATCTTTAGTGGAATGTGTAGA 57.700 37.500 0.00 0.00 0.00 2.59
252 253 6.595772 GAGCATCTTTAGTGGAATGTGTAG 57.404 41.667 0.00 0.00 0.00 2.74
276 277 9.153721 CCGGTGTGTAAGTTTTAGTATTCATAA 57.846 33.333 0.00 0.00 0.00 1.90
277 278 7.765360 CCCGGTGTGTAAGTTTTAGTATTCATA 59.235 37.037 0.00 0.00 0.00 2.15
278 279 6.596497 CCCGGTGTGTAAGTTTTAGTATTCAT 59.404 38.462 0.00 0.00 0.00 2.57
279 280 5.933463 CCCGGTGTGTAAGTTTTAGTATTCA 59.067 40.000 0.00 0.00 0.00 2.57
280 281 5.163824 GCCCGGTGTGTAAGTTTTAGTATTC 60.164 44.000 0.00 0.00 0.00 1.75
281 282 4.696877 GCCCGGTGTGTAAGTTTTAGTATT 59.303 41.667 0.00 0.00 0.00 1.89
282 283 4.256110 GCCCGGTGTGTAAGTTTTAGTAT 58.744 43.478 0.00 0.00 0.00 2.12
283 284 3.556843 GGCCCGGTGTGTAAGTTTTAGTA 60.557 47.826 0.00 0.00 0.00 1.82
337 338 2.809601 CGATATAGGTGCGGCCGC 60.810 66.667 42.35 42.35 43.70 6.53
446 604 4.280174 AGAAACTTACTGGCTCGTCTGTAA 59.720 41.667 1.95 1.95 32.68 2.41
447 605 3.825014 AGAAACTTACTGGCTCGTCTGTA 59.175 43.478 0.00 0.00 0.00 2.74
448 606 2.628657 AGAAACTTACTGGCTCGTCTGT 59.371 45.455 0.00 0.00 0.00 3.41
449 607 3.057174 AGAGAAACTTACTGGCTCGTCTG 60.057 47.826 0.00 0.00 0.00 3.51
456 614 1.464997 CGGCAAGAGAAACTTACTGGC 59.535 52.381 0.00 0.00 37.03 4.85
493 651 2.025898 GTGGGAGAGTAGAGTAGTGCC 58.974 57.143 0.00 0.00 0.00 5.01
494 652 3.007473 AGTGGGAGAGTAGAGTAGTGC 57.993 52.381 0.00 0.00 0.00 4.40
496 654 4.099881 CGACTAGTGGGAGAGTAGAGTAGT 59.900 50.000 0.00 0.00 32.49 2.73
497 655 4.624015 CGACTAGTGGGAGAGTAGAGTAG 58.376 52.174 0.00 0.00 32.49 2.57
498 656 3.181467 GCGACTAGTGGGAGAGTAGAGTA 60.181 52.174 0.00 0.00 32.49 2.59
499 657 2.420408 GCGACTAGTGGGAGAGTAGAGT 60.420 54.545 0.00 0.00 32.49 3.24
500 658 2.215196 GCGACTAGTGGGAGAGTAGAG 58.785 57.143 0.00 0.00 32.49 2.43
501 659 1.134159 GGCGACTAGTGGGAGAGTAGA 60.134 57.143 0.00 0.00 32.49 2.59
530 700 1.801913 GACTCGATCGTGCGCTGTT 60.802 57.895 15.94 0.00 0.00 3.16
539 709 0.247735 GTCACTCGTGGACTCGATCG 60.248 60.000 9.36 9.36 39.12 3.69
540 710 0.099082 GGTCACTCGTGGACTCGATC 59.901 60.000 0.00 0.00 39.12 3.69
541 711 1.313812 GGGTCACTCGTGGACTCGAT 61.314 60.000 0.00 0.00 39.12 3.59
542 712 1.970114 GGGTCACTCGTGGACTCGA 60.970 63.158 0.00 0.00 38.19 4.04
563 733 3.432890 GGAAAAGGCAAAAATGTGGTGGA 60.433 43.478 0.00 0.00 0.00 4.02
565 735 2.543430 CGGAAAAGGCAAAAATGTGGTG 59.457 45.455 0.00 0.00 0.00 4.17
566 736 2.832563 CGGAAAAGGCAAAAATGTGGT 58.167 42.857 0.00 0.00 0.00 4.16
568 738 2.208431 TGCGGAAAAGGCAAAAATGTG 58.792 42.857 0.00 0.00 37.49 3.21
569 739 2.482864 CTGCGGAAAAGGCAAAAATGT 58.517 42.857 0.00 0.00 40.39 2.71
579 780 1.023513 CAGAGGAGCCTGCGGAAAAG 61.024 60.000 0.00 0.00 0.00 2.27
584 785 0.460987 CTAAACAGAGGAGCCTGCGG 60.461 60.000 0.00 0.00 37.68 5.69
620 821 2.417719 CAGACTGAAAAGAACCGGGAG 58.582 52.381 6.32 0.00 0.00 4.30
621 822 1.542547 GCAGACTGAAAAGAACCGGGA 60.543 52.381 6.32 0.00 0.00 5.14
623 824 1.593196 TGCAGACTGAAAAGAACCGG 58.407 50.000 6.65 0.00 0.00 5.28
801 1721 9.290988 TGCTCTTACAAACTTTGACCAAATATA 57.709 29.630 8.55 0.00 0.00 0.86
802 1722 8.082242 GTGCTCTTACAAACTTTGACCAAATAT 58.918 33.333 8.55 0.00 0.00 1.28
804 1724 6.096846 AGTGCTCTTACAAACTTTGACCAAAT 59.903 34.615 8.55 0.00 0.00 2.32
805 1725 5.417580 AGTGCTCTTACAAACTTTGACCAAA 59.582 36.000 8.55 0.00 0.00 3.28
807 1727 4.335315 CAGTGCTCTTACAAACTTTGACCA 59.665 41.667 8.55 0.00 0.00 4.02
808 1728 4.261197 CCAGTGCTCTTACAAACTTTGACC 60.261 45.833 8.55 0.00 0.00 4.02
809 1729 4.574828 TCCAGTGCTCTTACAAACTTTGAC 59.425 41.667 8.55 0.00 0.00 3.18
810 1730 4.776349 TCCAGTGCTCTTACAAACTTTGA 58.224 39.130 8.55 0.00 0.00 2.69
811 1731 4.816385 TCTCCAGTGCTCTTACAAACTTTG 59.184 41.667 0.00 0.00 0.00 2.77
815 1735 4.241681 CTCTCTCCAGTGCTCTTACAAAC 58.758 47.826 0.00 0.00 0.00 2.93
816 1736 3.898123 ACTCTCTCCAGTGCTCTTACAAA 59.102 43.478 0.00 0.00 0.00 2.83
818 1738 3.162147 ACTCTCTCCAGTGCTCTTACA 57.838 47.619 0.00 0.00 0.00 2.41
819 1739 4.266714 AGTACTCTCTCCAGTGCTCTTAC 58.733 47.826 0.00 0.00 34.53 2.34
820 1740 4.577988 AGTACTCTCTCCAGTGCTCTTA 57.422 45.455 0.00 0.00 34.53 2.10
821 1741 3.449746 AGTACTCTCTCCAGTGCTCTT 57.550 47.619 0.00 0.00 34.53 2.85
823 1743 4.266714 AGTTAGTACTCTCTCCAGTGCTC 58.733 47.826 0.00 0.00 39.72 4.26
824 1744 4.310022 AGTTAGTACTCTCTCCAGTGCT 57.690 45.455 0.00 0.00 41.65 4.40
825 1745 5.415077 TGTTAGTTAGTACTCTCTCCAGTGC 59.585 44.000 0.00 0.00 35.78 4.40
826 1746 7.554835 AGATGTTAGTTAGTACTCTCTCCAGTG 59.445 40.741 0.00 0.00 35.78 3.66
827 1747 7.635648 AGATGTTAGTTAGTACTCTCTCCAGT 58.364 38.462 0.00 0.00 35.78 4.00
828 1748 7.990886 AGAGATGTTAGTTAGTACTCTCTCCAG 59.009 40.741 0.00 0.00 35.78 3.86
829 1749 7.863722 AGAGATGTTAGTTAGTACTCTCTCCA 58.136 38.462 0.00 0.96 35.78 3.86
830 1750 7.170320 CGAGAGATGTTAGTTAGTACTCTCTCC 59.830 44.444 19.32 8.59 40.65 3.71
831 1751 7.306983 GCGAGAGATGTTAGTTAGTACTCTCTC 60.307 44.444 16.97 16.97 43.45 3.20
832 1752 6.480981 GCGAGAGATGTTAGTTAGTACTCTCT 59.519 42.308 3.10 1.60 43.45 3.10
834 1754 6.350906 AGCGAGAGATGTTAGTTAGTACTCT 58.649 40.000 0.00 0.00 35.78 3.24
835 1755 6.607735 AGCGAGAGATGTTAGTTAGTACTC 57.392 41.667 0.00 0.00 35.78 2.59
836 1756 7.012232 GGTTAGCGAGAGATGTTAGTTAGTACT 59.988 40.741 0.00 0.00 38.44 2.73
840 1949 5.972382 GTGGTTAGCGAGAGATGTTAGTTAG 59.028 44.000 0.00 0.00 0.00 2.34
849 1958 2.750141 TAGGGTGGTTAGCGAGAGAT 57.250 50.000 0.00 0.00 0.00 2.75
896 2006 1.300931 TCGCTTGCTCTGGTGTGTC 60.301 57.895 0.00 0.00 0.00 3.67
905 2018 3.482783 GCTGTCCGTCGCTTGCTC 61.483 66.667 0.00 0.00 0.00 4.26
969 2114 1.663074 CTAAGCCTGATCGCTCGCC 60.663 63.158 0.00 0.00 38.44 5.54
1075 2220 4.508128 GTCCGGGAGCGCGATCAA 62.508 66.667 27.12 5.26 0.00 2.57
1233 2378 0.978146 CGGAGTTGATCACCTCCCCT 60.978 60.000 28.08 4.19 43.65 4.79
1236 2381 0.895530 TGTCGGAGTTGATCACCTCC 59.104 55.000 25.46 25.46 43.20 4.30
1360 2505 4.516195 GGCGGCGGAGAAGTCCTC 62.516 72.222 9.78 0.00 41.34 3.71
1632 2777 4.112341 GAGTAGTCGGTGCGGCGT 62.112 66.667 9.37 0.00 36.23 5.68
1815 2964 4.508128 ACGCGCCACATACGGGAG 62.508 66.667 5.73 0.00 45.25 4.30
1816 2965 4.501714 GACGCGCCACATACGGGA 62.502 66.667 5.73 0.00 45.25 5.14
1926 3075 3.644399 GAGCAGGAACGACCGGACC 62.644 68.421 9.46 3.23 44.74 4.46
2067 3216 5.532406 TGTATGTACGTATGTAGGGAGGTTC 59.468 44.000 0.00 0.00 0.00 3.62
2068 3217 5.448654 TGTATGTACGTATGTAGGGAGGTT 58.551 41.667 0.00 0.00 0.00 3.50
2069 3218 5.052693 TGTATGTACGTATGTAGGGAGGT 57.947 43.478 0.00 0.00 0.00 3.85
2091 3240 1.378531 TCGTGCAGCTTGTCTTGTTT 58.621 45.000 0.00 0.00 0.00 2.83
2094 3243 0.383491 CGTTCGTGCAGCTTGTCTTG 60.383 55.000 0.00 0.00 0.00 3.02
2095 3244 1.498865 CCGTTCGTGCAGCTTGTCTT 61.499 55.000 0.00 0.00 0.00 3.01
2097 3246 1.954146 TCCGTTCGTGCAGCTTGTC 60.954 57.895 0.00 0.00 0.00 3.18
2113 3267 2.806237 CTAGTTCGGGGAGCGTCC 59.194 66.667 0.00 0.00 35.23 4.79
2114 3268 2.104530 GCTAGTTCGGGGAGCGTC 59.895 66.667 0.00 0.00 0.00 5.19
2137 3291 2.203337 GGCGATTGGGCTATGGCA 60.203 61.111 2.58 0.00 40.87 4.92
2142 3296 0.813610 CGTCAATGGCGATTGGGCTA 60.814 55.000 19.69 0.00 39.68 3.93
2146 3300 1.714899 GGACCGTCAATGGCGATTGG 61.715 60.000 19.69 8.00 39.68 3.16
2147 3301 1.024046 TGGACCGTCAATGGCGATTG 61.024 55.000 9.51 14.69 40.47 2.67
2288 3445 4.450419 AGAAGTGAAAATGAAGCAGAGTCG 59.550 41.667 0.00 0.00 0.00 4.18
2371 3528 3.949754 GGGGTTAATTCTCGGGGTAAAAG 59.050 47.826 0.00 0.00 0.00 2.27
2413 3570 2.704572 ACAGCAAGAGCCTGTTACATC 58.295 47.619 0.00 0.00 43.56 3.06
2521 3680 1.675801 CTCAGCTGAGTGGAAGCCA 59.324 57.895 31.71 0.00 41.82 4.75
2525 3684 2.460669 TGATAGCTCAGCTGAGTGGAA 58.539 47.619 37.25 23.30 43.85 3.53
2656 3821 4.403734 GTCTGGAGGAGGGAGTAATAGAG 58.596 52.174 0.00 0.00 0.00 2.43
2802 3970 1.892474 GTAGCCAGTTGCCATCCAAAA 59.108 47.619 0.00 0.00 42.71 2.44
2843 4011 1.203313 CCAACGCCGAGACGAAAAC 59.797 57.895 0.00 0.00 36.70 2.43
2872 4040 1.253100 TTGGCGAAAGAAATGACCCC 58.747 50.000 0.00 0.00 0.00 4.95
2922 4090 1.616374 GTTTGGATTTTGCCGAGGGAA 59.384 47.619 0.00 0.00 0.00 3.97
2989 4157 3.717400 TGCAAGGCACAATTCGTTAAA 57.283 38.095 0.00 0.00 31.71 1.52
2991 4159 3.717400 TTTGCAAGGCACAATTCGTTA 57.283 38.095 0.00 0.00 38.71 3.18
3002 4170 3.920412 CCTTTCGTTAAGATTTGCAAGGC 59.080 43.478 0.00 0.00 35.80 4.35
3008 4176 3.442625 GGGGGTCCTTTCGTTAAGATTTG 59.557 47.826 2.34 0.00 35.80 2.32
3018 4186 0.688487 TTGTAGTGGGGGTCCTTTCG 59.312 55.000 0.00 0.00 0.00 3.46
3027 4195 4.194640 CTGACATCAGATTTGTAGTGGGG 58.805 47.826 2.51 0.00 46.59 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.