Multiple sequence alignment - TraesCS5A01G459700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G459700 chr5A 100.000 3395 0 0 1 3395 640369575 640372969 0.000000e+00 6270.0
1 TraesCS5A01G459700 chr5A 92.009 876 65 4 1556 2428 640925779 640924906 0.000000e+00 1225.0
2 TraesCS5A01G459700 chr5A 93.409 531 21 7 1990 2510 640307768 640308294 0.000000e+00 774.0
3 TraesCS5A01G459700 chr5A 86.733 603 50 16 673 1255 640926988 640926396 0.000000e+00 643.0
4 TraesCS5A01G459700 chr5A 93.793 290 8 1 3106 3385 640389062 640388773 8.710000e-116 427.0
5 TraesCS5A01G459700 chr5A 85.572 402 58 0 2010 2411 640354016 640354417 4.050000e-114 422.0
6 TraesCS5A01G459700 chr5A 86.119 353 20 17 2605 2957 640308210 640308533 1.500000e-93 353.0
7 TraesCS5A01G459700 chr5A 88.108 185 22 0 1072 1256 640390592 640390776 1.590000e-53 220.0
8 TraesCS5A01G459700 chr5A 94.340 53 2 1 3035 3087 640318616 640318667 2.810000e-11 80.5
9 TraesCS5A01G459700 chr5B 91.429 1295 61 18 1520 2812 642993106 642994352 0.000000e+00 1731.0
10 TraesCS5A01G459700 chr5B 89.969 957 87 7 1552 2501 643651619 643650665 0.000000e+00 1227.0
11 TraesCS5A01G459700 chr5B 88.050 887 53 32 662 1523 642991949 642992807 0.000000e+00 1002.0
12 TraesCS5A01G459700 chr5B 84.236 609 66 21 673 1265 643652843 643652249 1.770000e-157 566.0
13 TraesCS5A01G459700 chr5B 87.464 343 34 7 103 439 642991571 642991910 1.480000e-103 387.0
14 TraesCS5A01G459700 chr5B 79.787 188 35 1 991 1175 643007734 643007921 2.130000e-27 134.0
15 TraesCS5A01G459700 chr5B 85.714 119 12 3 2971 3086 643007677 643007793 1.650000e-23 121.0
16 TraesCS5A01G459700 chr5D 94.939 909 46 0 1520 2428 511957241 511958149 0.000000e+00 1424.0
17 TraesCS5A01G459700 chr5D 90.457 985 82 9 1520 2501 512763671 512762696 0.000000e+00 1288.0
18 TraesCS5A01G459700 chr5D 87.774 867 55 25 670 1523 511956123 511956951 0.000000e+00 966.0
19 TraesCS5A01G459700 chr5D 85.342 614 59 19 675 1265 512765125 512764520 1.040000e-169 606.0
20 TraesCS5A01G459700 chr5D 84.158 505 61 8 1605 2091 511973036 511973539 3.970000e-129 472.0
21 TraesCS5A01G459700 chr5D 93.311 299 10 3 3107 3395 52366760 52367058 1.870000e-117 433.0
22 TraesCS5A01G459700 chr5D 92.977 299 11 1 3107 3395 282366266 282366564 8.710000e-116 427.0
23 TraesCS5A01G459700 chr5D 92.977 299 11 1 3107 3395 422770368 422770666 8.710000e-116 427.0
24 TraesCS5A01G459700 chr5D 92.977 299 10 4 3107 3395 356111774 356112071 3.130000e-115 425.0
25 TraesCS5A01G459700 chr5D 92.667 300 12 1 3106 3395 282373795 282373496 1.130000e-114 424.0
26 TraesCS5A01G459700 chr5D 92.691 301 9 4 3105 3395 52374529 52374232 4.050000e-114 422.0
27 TraesCS5A01G459700 chr5D 85.130 269 37 2 991 1256 511972141 511972409 4.320000e-69 272.0
28 TraesCS5A01G459700 chr5D 90.000 200 18 2 2114 2311 511973922 511974121 1.210000e-64 257.0
29 TraesCS5A01G459700 chr5D 93.701 127 6 2 2802 2927 511970814 511970939 4.470000e-44 189.0
30 TraesCS5A01G459700 chr5D 94.118 68 4 0 2737 2804 511958199 511958266 1.670000e-18 104.0
31 TraesCS5A01G459700 chr3D 86.630 718 82 8 1690 2396 601626126 601626840 0.000000e+00 782.0
32 TraesCS5A01G459700 chr3D 93.729 303 8 4 3104 3395 52850154 52849852 8.640000e-121 444.0
33 TraesCS5A01G459700 chr3D 92.188 128 10 0 1556 1683 601625875 601626002 7.480000e-42 182.0
34 TraesCS5A01G459700 chr4D 93.355 301 10 1 3105 3395 392724848 392724548 1.450000e-118 436.0
35 TraesCS5A01G459700 chr7D 93.000 300 11 1 3106 3395 445249409 445249110 2.420000e-116 429.0
36 TraesCS5A01G459700 chr7D 92.642 299 12 3 3107 3395 426829580 426829878 4.050000e-114 422.0
37 TraesCS5A01G459700 chr7D 92.691 301 9 4 3105 3395 426837238 426836941 4.050000e-114 422.0
38 TraesCS5A01G459700 chr7D 92.042 289 13 1 3107 3385 538836051 538836339 6.830000e-107 398.0
39 TraesCS5A01G459700 chr1A 92.359 301 12 2 3105 3395 13807265 13807564 5.240000e-113 418.0
40 TraesCS5A01G459700 chr2A 91.892 296 13 3 3107 3392 752883172 752882878 1.470000e-108 403.0
41 TraesCS5A01G459700 chr2A 94.915 177 7 2 487 662 632622108 632622283 3.340000e-70 276.0
42 TraesCS5A01G459700 chr7A 91.333 300 15 3 3106 3395 658689682 658689980 1.900000e-107 399.0
43 TraesCS5A01G459700 chr2B 98.171 164 3 0 492 655 199751331 199751168 1.540000e-73 287.0
44 TraesCS5A01G459700 chr4B 96.491 171 6 0 492 662 367286041 367285871 1.990000e-72 283.0
45 TraesCS5A01G459700 chr4A 95.455 176 8 0 489 664 584518375 584518550 7.170000e-72 281.0
46 TraesCS5A01G459700 chr4A 93.956 182 8 3 483 661 735482012 735481831 4.320000e-69 272.0
47 TraesCS5A01G459700 chrUn 95.429 175 6 2 481 655 333496587 333496759 9.280000e-71 278.0
48 TraesCS5A01G459700 chr3B 95.906 171 7 0 492 662 783212873 783212703 9.280000e-71 278.0
49 TraesCS5A01G459700 chr3A 94.413 179 10 0 480 658 715754649 715754471 3.340000e-70 276.0
50 TraesCS5A01G459700 chr7B 93.514 185 10 2 492 675 261823120 261822937 1.200000e-69 274.0
51 TraesCS5A01G459700 chr7B 94.737 38 2 0 133 170 35259652 35259615 3.660000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G459700 chr5A 640369575 640372969 3394 False 6270.000000 6270 100.00000 1 3395 1 chr5A.!!$F3 3394
1 TraesCS5A01G459700 chr5A 640924906 640926988 2082 True 934.000000 1225 89.37100 673 2428 2 chr5A.!!$R2 1755
2 TraesCS5A01G459700 chr5A 640307768 640308533 765 False 563.500000 774 89.76400 1990 2957 2 chr5A.!!$F5 967
3 TraesCS5A01G459700 chr5B 642991571 642994352 2781 False 1040.000000 1731 88.98100 103 2812 3 chr5B.!!$F1 2709
4 TraesCS5A01G459700 chr5B 643650665 643652843 2178 True 896.500000 1227 87.10250 673 2501 2 chr5B.!!$R1 1828
5 TraesCS5A01G459700 chr5D 512762696 512765125 2429 True 947.000000 1288 87.89950 675 2501 2 chr5D.!!$R3 1826
6 TraesCS5A01G459700 chr5D 511956123 511958266 2143 False 831.333333 1424 92.27700 670 2804 3 chr5D.!!$F5 2134
7 TraesCS5A01G459700 chr5D 511970814 511974121 3307 False 297.500000 472 88.24725 991 2927 4 chr5D.!!$F6 1936
8 TraesCS5A01G459700 chr3D 601625875 601626840 965 False 482.000000 782 89.40900 1556 2396 2 chr3D.!!$F1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 457 0.389037 GTTGAACCGTACGGAGACCC 60.389 60.0 39.52 21.46 38.96 4.46 F
712 718 1.070821 CACACCACAGAGCACATACG 58.929 55.0 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 3462 0.835971 TGCAGACCTTGGTGGAGCTA 60.836 55.000 0.0 0.0 39.71 3.32 R
2687 4522 1.269448 TGGAGAAAAATTGAGGCACGC 59.731 47.619 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 9.541143 TTTTCTAAATGACACAAGGATTTTTCC 57.459 29.630 0.00 0.00 0.00 3.13
73 74 7.831691 TCTAAATGACACAAGGATTTTTCCA 57.168 32.000 0.00 0.00 0.00 3.53
75 76 8.306038 TCTAAATGACACAAGGATTTTTCCATG 58.694 33.333 0.00 0.00 34.89 3.66
76 77 6.423776 AATGACACAAGGATTTTTCCATGT 57.576 33.333 0.00 0.00 41.73 3.21
77 78 5.867903 TGACACAAGGATTTTTCCATGTT 57.132 34.783 0.41 0.00 39.38 2.71
78 79 5.841810 TGACACAAGGATTTTTCCATGTTC 58.158 37.500 0.41 3.89 39.38 3.18
79 80 5.362143 TGACACAAGGATTTTTCCATGTTCA 59.638 36.000 0.41 5.92 39.38 3.18
83 84 6.985645 CACAAGGATTTTTCCATGTTCAAGAA 59.014 34.615 0.41 0.00 39.38 2.52
85 86 8.212995 ACAAGGATTTTTCCATGTTCAAGAATT 58.787 29.630 0.00 0.00 38.39 2.17
86 87 8.715088 CAAGGATTTTTCCATGTTCAAGAATTC 58.285 33.333 0.00 0.00 0.00 2.17
87 88 7.389232 AGGATTTTTCCATGTTCAAGAATTCC 58.611 34.615 0.65 0.00 0.00 3.01
88 89 7.236225 AGGATTTTTCCATGTTCAAGAATTCCT 59.764 33.333 0.65 0.00 0.00 3.36
89 90 7.879677 GGATTTTTCCATGTTCAAGAATTCCTT 59.120 33.333 0.65 0.00 34.91 3.36
90 91 8.837788 ATTTTTCCATGTTCAAGAATTCCTTC 57.162 30.769 0.65 0.00 31.42 3.46
91 92 6.975196 TTTCCATGTTCAAGAATTCCTTCA 57.025 33.333 0.65 0.00 33.56 3.02
92 93 6.579666 TTCCATGTTCAAGAATTCCTTCAG 57.420 37.500 0.65 0.00 33.56 3.02
93 94 5.879763 TCCATGTTCAAGAATTCCTTCAGA 58.120 37.500 0.65 0.00 33.56 3.27
94 95 5.942236 TCCATGTTCAAGAATTCCTTCAGAG 59.058 40.000 0.65 0.00 33.56 3.35
96 97 6.093771 CCATGTTCAAGAATTCCTTCAGAGAG 59.906 42.308 0.65 0.00 33.56 3.20
97 98 5.555017 TGTTCAAGAATTCCTTCAGAGAGG 58.445 41.667 0.65 0.00 38.20 3.69
98 99 4.833478 TCAAGAATTCCTTCAGAGAGGG 57.167 45.455 0.65 0.00 37.41 4.30
100 101 4.223923 TCAAGAATTCCTTCAGAGAGGGTC 59.776 45.833 0.65 0.00 37.41 4.46
101 102 4.073425 AGAATTCCTTCAGAGAGGGTCT 57.927 45.455 0.65 0.00 37.41 3.85
121 122 6.002082 GGTCTGAACCTAAGTAAACACCATT 58.998 40.000 0.00 0.00 42.80 3.16
122 123 6.072673 GGTCTGAACCTAAGTAAACACCATTG 60.073 42.308 0.00 0.00 42.80 2.82
123 124 6.485648 GTCTGAACCTAAGTAAACACCATTGT 59.514 38.462 0.00 0.00 37.67 2.71
125 126 5.467399 TGAACCTAAGTAAACACCATTGTCG 59.533 40.000 0.00 0.00 33.55 4.35
127 128 4.000988 CCTAAGTAAACACCATTGTCGCT 58.999 43.478 0.00 0.00 33.55 4.93
156 157 0.394899 ATCTTGCCAAGGCTACCAGC 60.395 55.000 12.96 0.00 42.51 4.85
166 167 0.393132 GGCTACCAGCTTGGGACTTC 60.393 60.000 0.00 0.00 43.37 3.01
171 172 1.561542 ACCAGCTTGGGACTTCCTATG 59.438 52.381 0.00 0.00 43.37 2.23
173 174 2.636830 CAGCTTGGGACTTCCTATGTG 58.363 52.381 0.00 0.00 36.20 3.21
174 175 1.561542 AGCTTGGGACTTCCTATGTGG 59.438 52.381 0.00 0.00 36.20 4.17
188 190 0.680921 ATGTGGGACTGCCGGATTTG 60.681 55.000 5.05 0.00 33.83 2.32
191 193 1.749258 GGGACTGCCGGATTTGACC 60.749 63.158 5.05 0.74 33.83 4.02
231 233 2.281484 GAAGGCGGTGGCACTTGA 60.281 61.111 18.45 0.00 42.47 3.02
240 242 1.537202 GGTGGCACTTGATGAGTTGAC 59.463 52.381 18.45 0.00 36.10 3.18
315 319 6.046593 TGTGAACATTTACGTTGAGAGAGTT 58.953 36.000 0.00 0.00 0.00 3.01
317 321 6.018994 GTGAACATTTACGTTGAGAGAGTTGT 60.019 38.462 0.00 0.00 0.00 3.32
323 327 1.664649 TTGAGAGAGTTGTGCCGCG 60.665 57.895 0.00 0.00 0.00 6.46
337 341 2.744318 CGCGTGCACCCACCATAA 60.744 61.111 12.15 0.00 38.79 1.90
339 343 1.653094 CGCGTGCACCCACCATAAAT 61.653 55.000 12.15 0.00 38.79 1.40
341 345 1.746220 GCGTGCACCCACCATAAATAA 59.254 47.619 12.15 0.00 38.79 1.40
389 395 9.448438 AAAATAACAGCATACATGTGAAGACTA 57.552 29.630 9.11 0.00 0.00 2.59
393 399 5.102313 CAGCATACATGTGAAGACTAACGA 58.898 41.667 9.11 0.00 0.00 3.85
395 401 4.027621 GCATACATGTGAAGACTAACGACG 60.028 45.833 9.11 0.00 0.00 5.12
437 443 5.747565 CACGCAAGATCAAGTAAAGTTGAA 58.252 37.500 4.43 0.00 39.51 2.69
438 444 5.621228 CACGCAAGATCAAGTAAAGTTGAAC 59.379 40.000 4.43 2.51 39.51 3.18
439 445 5.147162 CGCAAGATCAAGTAAAGTTGAACC 58.853 41.667 4.43 1.03 39.84 3.62
440 446 5.147162 GCAAGATCAAGTAAAGTTGAACCG 58.853 41.667 4.43 0.00 39.84 4.44
442 448 6.073440 GCAAGATCAAGTAAAGTTGAACCGTA 60.073 38.462 4.43 0.00 39.84 4.02
443 449 7.288672 CAAGATCAAGTAAAGTTGAACCGTAC 58.711 38.462 4.43 0.00 39.84 3.67
444 450 5.632347 AGATCAAGTAAAGTTGAACCGTACG 59.368 40.000 8.69 8.69 39.84 3.67
445 451 4.050553 TCAAGTAAAGTTGAACCGTACGG 58.949 43.478 32.22 32.22 33.41 4.02
446 452 4.050553 CAAGTAAAGTTGAACCGTACGGA 58.949 43.478 39.52 16.15 38.96 4.69
447 453 3.905784 AGTAAAGTTGAACCGTACGGAG 58.094 45.455 39.52 15.71 38.96 4.63
449 455 2.428888 AAGTTGAACCGTACGGAGAC 57.571 50.000 39.52 27.20 38.96 3.36
451 457 0.389037 GTTGAACCGTACGGAGACCC 60.389 60.000 39.52 21.46 38.96 4.46
479 485 2.500229 ACGGTCGATTGTCATTTTGGT 58.500 42.857 0.00 0.00 0.00 3.67
487 493 7.383843 GGTCGATTGTCATTTTGGTTGTTTATT 59.616 33.333 0.00 0.00 0.00 1.40
488 494 8.760569 GTCGATTGTCATTTTGGTTGTTTATTT 58.239 29.630 0.00 0.00 0.00 1.40
500 506 7.852971 TGGTTGTTTATTTATTACTCCCTCG 57.147 36.000 0.00 0.00 0.00 4.63
501 507 6.824704 TGGTTGTTTATTTATTACTCCCTCGG 59.175 38.462 0.00 0.00 0.00 4.63
502 508 6.825213 GGTTGTTTATTTATTACTCCCTCGGT 59.175 38.462 0.00 0.00 0.00 4.69
503 509 7.337689 GGTTGTTTATTTATTACTCCCTCGGTT 59.662 37.037 0.00 0.00 0.00 4.44
504 510 8.393366 GTTGTTTATTTATTACTCCCTCGGTTC 58.607 37.037 0.00 0.00 0.00 3.62
505 511 7.049754 TGTTTATTTATTACTCCCTCGGTTCC 58.950 38.462 0.00 0.00 0.00 3.62
509 515 5.502089 TTATTACTCCCTCGGTTCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
510 516 4.586306 ATTACTCCCTCGGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
511 517 5.703730 ATTACTCCCTCGGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
512 518 3.345508 ACTCCCTCGGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
513 519 2.910977 ACTCCCTCGGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
514 520 3.329814 ACTCCCTCGGTTCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
515 521 3.681593 TCCCTCGGTTCCAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
516 522 3.073356 TCCCTCGGTTCCAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
517 523 3.439129 CCCTCGGTTCCAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
518 524 4.324267 CCTCGGTTCCAAAATACTTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
519 525 4.760204 CCTCGGTTCCAAAATACTTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
520 526 5.240844 CCTCGGTTCCAAAATACTTGTCTTT 59.759 40.000 0.00 0.00 0.00 2.52
521 527 6.308371 TCGGTTCCAAAATACTTGTCTTTC 57.692 37.500 0.00 0.00 0.00 2.62
522 528 6.059484 TCGGTTCCAAAATACTTGTCTTTCT 58.941 36.000 0.00 0.00 0.00 2.52
524 530 7.386848 TCGGTTCCAAAATACTTGTCTTTCTAG 59.613 37.037 0.00 0.00 0.00 2.43
525 531 7.360946 CGGTTCCAAAATACTTGTCTTTCTAGG 60.361 40.741 0.00 0.00 0.00 3.02
526 532 7.306213 GTTCCAAAATACTTGTCTTTCTAGGC 58.694 38.462 0.00 0.00 0.00 3.93
528 534 7.175104 TCCAAAATACTTGTCTTTCTAGGCAT 58.825 34.615 0.00 0.00 35.56 4.40
530 536 8.306761 CCAAAATACTTGTCTTTCTAGGCATTT 58.693 33.333 0.00 0.00 35.56 2.32
531 537 9.346725 CAAAATACTTGTCTTTCTAGGCATTTC 57.653 33.333 0.00 0.00 35.56 2.17
535 541 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
536 542 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
537 543 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
538 544 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
539 545 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
540 546 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
541 547 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
542 548 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
546 552 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
548 554 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
550 556 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
551 557 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
553 559 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
556 562 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
571 577 9.719355 ATACGGATGTATGCAGACATATTTTAA 57.281 29.630 25.90 10.76 40.18 1.52
572 578 8.445275 ACGGATGTATGCAGACATATTTTAAA 57.555 30.769 25.90 0.00 40.18 1.52
573 579 8.559536 ACGGATGTATGCAGACATATTTTAAAG 58.440 33.333 25.90 13.12 40.18 1.85
575 581 9.669353 GGATGTATGCAGACATATTTTAAAGTG 57.331 33.333 25.90 0.00 40.18 3.16
596 602 7.016361 AGTGTAGATTCATTCATTTTACGCC 57.984 36.000 0.00 0.00 0.00 5.68
597 603 5.901884 GTGTAGATTCATTCATTTTACGCCG 59.098 40.000 0.00 0.00 0.00 6.46
598 604 5.583061 TGTAGATTCATTCATTTTACGCCGT 59.417 36.000 0.00 0.00 0.00 5.68
599 605 6.757478 TGTAGATTCATTCATTTTACGCCGTA 59.243 34.615 0.00 0.00 0.00 4.02
600 606 6.861065 AGATTCATTCATTTTACGCCGTAT 57.139 33.333 0.00 0.00 0.00 3.06
601 607 6.658831 AGATTCATTCATTTTACGCCGTATG 58.341 36.000 0.00 0.00 0.00 2.39
603 609 6.905544 TTCATTCATTTTACGCCGTATGTA 57.094 33.333 0.00 0.00 0.00 2.29
604 610 6.519353 TCATTCATTTTACGCCGTATGTAG 57.481 37.500 0.00 0.00 0.00 2.74
606 612 5.954434 TTCATTTTACGCCGTATGTAGTC 57.046 39.130 0.00 0.00 0.00 2.59
609 615 6.044046 TCATTTTACGCCGTATGTAGTCATT 58.956 36.000 0.00 0.00 35.70 2.57
610 616 6.535865 TCATTTTACGCCGTATGTAGTCATTT 59.464 34.615 0.00 0.00 35.70 2.32
611 617 5.705813 TTTACGCCGTATGTAGTCATTTG 57.294 39.130 0.00 0.00 35.70 2.32
613 619 3.592059 ACGCCGTATGTAGTCATTTGTT 58.408 40.909 0.00 0.00 35.70 2.83
614 620 3.369756 ACGCCGTATGTAGTCATTTGTTG 59.630 43.478 0.00 0.00 35.70 3.33
615 621 3.615056 CGCCGTATGTAGTCATTTGTTGA 59.385 43.478 0.00 0.00 35.70 3.18
616 622 4.092237 CGCCGTATGTAGTCATTTGTTGAA 59.908 41.667 0.00 0.00 35.70 2.69
619 625 6.687105 GCCGTATGTAGTCATTTGTTGAAATC 59.313 38.462 0.00 0.00 35.70 2.17
620 626 7.414098 GCCGTATGTAGTCATTTGTTGAAATCT 60.414 37.037 0.00 0.00 35.70 2.40
621 627 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
646 652 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
648 654 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
649 655 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
650 656 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
651 657 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
652 658 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
653 659 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
655 661 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
656 662 6.856757 AGTATTTAGGAACGGAGGGAGTATA 58.143 40.000 0.00 0.00 0.00 1.47
657 663 7.477008 AGTATTTAGGAACGGAGGGAGTATAT 58.523 38.462 0.00 0.00 0.00 0.86
658 664 6.607004 ATTTAGGAACGGAGGGAGTATATG 57.393 41.667 0.00 0.00 0.00 1.78
659 665 3.897657 AGGAACGGAGGGAGTATATGA 57.102 47.619 0.00 0.00 0.00 2.15
660 666 4.405756 AGGAACGGAGGGAGTATATGAT 57.594 45.455 0.00 0.00 0.00 2.45
712 718 1.070821 CACACCACAGAGCACATACG 58.929 55.000 0.00 0.00 0.00 3.06
738 745 3.732721 GCTGAACAAAACGTACGTACTCT 59.267 43.478 23.12 2.29 0.00 3.24
739 746 4.374707 GCTGAACAAAACGTACGTACTCTG 60.375 45.833 23.12 17.41 0.00 3.35
801 815 7.611855 AGAATGTTTTATCCTCCGTTTCAGAAT 59.388 33.333 0.00 0.00 0.00 2.40
872 893 2.487265 CCTGTCCGGCCTATAAATTGCT 60.487 50.000 0.00 0.00 0.00 3.91
875 896 3.134985 TGTCCGGCCTATAAATTGCTGTA 59.865 43.478 0.00 0.00 0.00 2.74
896 917 1.707427 AGCCAAACCTCCTGAACTCAT 59.293 47.619 0.00 0.00 0.00 2.90
912 933 6.625362 TGAACTCATCTCATTGTCTAGTGTC 58.375 40.000 0.00 0.00 0.00 3.67
978 1023 2.475200 GCTCGAAGCAACAGTTGTTT 57.525 45.000 14.65 14.65 41.89 2.83
979 1024 2.111756 GCTCGAAGCAACAGTTGTTTG 58.888 47.619 19.06 12.85 41.89 2.93
980 1025 2.477863 GCTCGAAGCAACAGTTGTTTGT 60.478 45.455 19.06 0.00 41.89 2.83
981 1026 3.354397 CTCGAAGCAACAGTTGTTTGTC 58.646 45.455 19.06 6.01 35.83 3.18
982 1027 2.101125 CGAAGCAACAGTTGTTTGTCG 58.899 47.619 19.06 13.61 35.83 4.35
985 1030 3.609103 AGCAACAGTTGTTTGTCGATC 57.391 42.857 14.88 0.00 35.83 3.69
987 1032 3.248602 AGCAACAGTTGTTTGTCGATCTC 59.751 43.478 14.88 0.00 35.83 2.75
989 1034 4.766007 CAACAGTTGTTTGTCGATCTCAG 58.234 43.478 4.99 0.00 35.83 3.35
990 1035 2.802816 ACAGTTGTTTGTCGATCTCAGC 59.197 45.455 0.00 0.00 0.00 4.26
991 1036 3.062763 CAGTTGTTTGTCGATCTCAGCT 58.937 45.455 0.00 0.00 0.00 4.24
992 1037 4.237724 CAGTTGTTTGTCGATCTCAGCTA 58.762 43.478 0.00 0.00 0.00 3.32
993 1038 4.325741 CAGTTGTTTGTCGATCTCAGCTAG 59.674 45.833 0.00 0.00 0.00 3.42
994 1039 2.881074 TGTTTGTCGATCTCAGCTAGC 58.119 47.619 6.62 6.62 0.00 3.42
995 1040 2.197577 GTTTGTCGATCTCAGCTAGCC 58.802 52.381 12.13 0.00 0.00 3.93
1032 1375 3.190744 CCAGTGTAGTCGCTTCTTGTAGA 59.809 47.826 0.00 0.00 31.46 2.59
1267 1619 3.722147 CCTACTCATTTCACTCCATCGG 58.278 50.000 0.00 0.00 0.00 4.18
1323 1679 5.241506 TGTTGCTACTAGTAGTTTGTACGGT 59.758 40.000 26.76 0.00 35.65 4.83
1329 1685 2.508526 AGTAGTTTGTACGGTCCGAGT 58.491 47.619 20.51 0.00 0.00 4.18
1330 1686 3.674997 AGTAGTTTGTACGGTCCGAGTA 58.325 45.455 20.51 0.00 0.00 2.59
1331 1687 4.265073 AGTAGTTTGTACGGTCCGAGTAT 58.735 43.478 20.51 0.00 0.00 2.12
1333 1689 5.880332 AGTAGTTTGTACGGTCCGAGTATTA 59.120 40.000 20.51 0.00 0.00 0.98
1334 1690 5.240713 AGTTTGTACGGTCCGAGTATTAG 57.759 43.478 20.51 0.00 0.00 1.73
1337 1693 6.767902 AGTTTGTACGGTCCGAGTATTAGATA 59.232 38.462 20.51 0.00 0.00 1.98
1338 1694 6.545504 TTGTACGGTCCGAGTATTAGATAC 57.454 41.667 20.51 7.10 35.99 2.24
1341 1697 7.441836 TGTACGGTCCGAGTATTAGATACTTA 58.558 38.462 20.51 0.00 45.64 2.24
1388 1770 4.051237 TCGTCACTTTCAGTGTCAATCAG 58.949 43.478 3.87 0.00 46.03 2.90
1394 1776 7.800380 GTCACTTTCAGTGTCAATCAGTTATTG 59.200 37.037 3.87 0.00 46.03 1.90
1428 1837 7.093354 TCTTCAGCTACAGAGAAAGTGTAATG 58.907 38.462 0.00 0.00 30.04 1.90
1432 1841 6.531948 CAGCTACAGAGAAAGTGTAATGTACC 59.468 42.308 0.00 0.00 30.04 3.34
1438 1847 9.263446 ACAGAGAAAGTGTAATGTACCCTTATA 57.737 33.333 0.00 0.00 0.00 0.98
1441 1850 9.708092 GAGAAAGTGTAATGTACCCTTATATCC 57.292 37.037 0.00 0.00 0.00 2.59
1442 1851 9.220906 AGAAAGTGTAATGTACCCTTATATCCA 57.779 33.333 0.00 0.00 0.00 3.41
1443 1852 9.841295 GAAAGTGTAATGTACCCTTATATCCAA 57.159 33.333 0.00 0.00 0.00 3.53
1444 1853 9.847224 AAAGTGTAATGTACCCTTATATCCAAG 57.153 33.333 0.00 0.00 0.00 3.61
1445 1854 7.450903 AGTGTAATGTACCCTTATATCCAAGC 58.549 38.462 0.00 0.00 0.00 4.01
1446 1855 7.292591 AGTGTAATGTACCCTTATATCCAAGCT 59.707 37.037 0.00 0.00 0.00 3.74
1447 1856 8.591072 GTGTAATGTACCCTTATATCCAAGCTA 58.409 37.037 0.00 0.00 0.00 3.32
1448 1857 9.333961 TGTAATGTACCCTTATATCCAAGCTAT 57.666 33.333 0.00 0.00 0.00 2.97
1473 1927 2.852449 TGTTCCTATTCTTCAGCCCCAT 59.148 45.455 0.00 0.00 0.00 4.00
1479 1933 6.498538 TCCTATTCTTCAGCCCCATTTTTAA 58.501 36.000 0.00 0.00 0.00 1.52
1480 1934 6.957020 TCCTATTCTTCAGCCCCATTTTTAAA 59.043 34.615 0.00 0.00 0.00 1.52
1493 1947 9.891828 GCCCCATTTTTAAAAATTTAAGTTGAG 57.108 29.630 20.92 8.59 36.52 3.02
1516 1972 7.907045 TGAGAACGTACGACTTTTCACTATATC 59.093 37.037 24.41 7.93 0.00 1.63
1517 1973 7.192232 AGAACGTACGACTTTTCACTATATCC 58.808 38.462 24.41 0.00 0.00 2.59
1518 1974 6.441093 ACGTACGACTTTTCACTATATCCA 57.559 37.500 24.41 0.00 0.00 3.41
1884 3342 1.525923 CTCCCAGCAGCAGCAGTAT 59.474 57.895 3.17 0.00 45.49 2.12
2004 3462 3.211288 CCGTCGCTGAGGGAGATT 58.789 61.111 0.00 0.00 39.66 2.40
2331 4151 3.005539 AGGATGCTCACCGCCACT 61.006 61.111 0.00 0.00 38.05 4.00
2347 4167 3.691342 CTGCCTTCGACGGGTCCA 61.691 66.667 10.33 0.00 0.00 4.02
2429 4262 7.838079 AGACTAGCACTAGATTCATCATCTT 57.162 36.000 11.59 0.00 39.47 2.40
2437 4270 8.855279 GCACTAGATTCATCATCTTCGTATAAC 58.145 37.037 0.00 0.00 39.47 1.89
2443 4276 9.261180 GATTCATCATCTTCGTATAACAAGGAA 57.739 33.333 0.00 0.00 0.00 3.36
2447 4280 9.476202 CATCATCTTCGTATAACAAGGAATGTA 57.524 33.333 0.00 0.00 42.99 2.29
2448 4281 9.698309 ATCATCTTCGTATAACAAGGAATGTAG 57.302 33.333 0.00 0.00 42.99 2.74
2449 4282 8.692710 TCATCTTCGTATAACAAGGAATGTAGT 58.307 33.333 0.00 0.00 42.99 2.73
2450 4283 9.961265 CATCTTCGTATAACAAGGAATGTAGTA 57.039 33.333 0.00 0.00 42.99 1.82
2451 4284 9.962783 ATCTTCGTATAACAAGGAATGTAGTAC 57.037 33.333 0.00 0.00 42.99 2.73
2452 4285 8.959548 TCTTCGTATAACAAGGAATGTAGTACA 58.040 33.333 5.24 5.24 42.99 2.90
2453 4286 9.745880 CTTCGTATAACAAGGAATGTAGTACAT 57.254 33.333 10.10 10.10 42.99 2.29
2454 4287 9.524106 TTCGTATAACAAGGAATGTAGTACATG 57.476 33.333 16.46 7.82 42.99 3.21
2455 4288 8.689061 TCGTATAACAAGGAATGTAGTACATGT 58.311 33.333 16.46 8.45 42.99 3.21
2461 4294 8.319143 ACAAGGAATGTAGTACATGTTTACAC 57.681 34.615 16.46 6.69 41.63 2.90
2557 4391 4.356405 TGTATATCCATCACTTGCCTGG 57.644 45.455 0.00 0.00 0.00 4.45
2612 4447 3.877559 CAAGGATTGTACCTCATCTGCA 58.122 45.455 0.00 0.00 42.34 4.41
2687 4522 9.481800 CAAATATATATTGCAGCTGTATGTTCG 57.518 33.333 16.64 0.00 0.00 3.95
2688 4523 3.885484 ATATTGCAGCTGTATGTTCGC 57.115 42.857 16.64 0.00 0.00 4.70
2689 4524 0.374758 ATTGCAGCTGTATGTTCGCG 59.625 50.000 16.64 0.00 0.00 5.87
2690 4525 0.948623 TTGCAGCTGTATGTTCGCGT 60.949 50.000 16.64 0.00 0.00 6.01
2691 4526 1.059369 GCAGCTGTATGTTCGCGTG 59.941 57.895 16.64 0.00 0.00 5.34
2693 4528 2.100631 AGCTGTATGTTCGCGTGCC 61.101 57.895 5.77 0.00 0.00 5.01
2694 4529 2.100631 GCTGTATGTTCGCGTGCCT 61.101 57.895 5.77 0.00 0.00 4.75
2696 4531 0.735978 CTGTATGTTCGCGTGCCTCA 60.736 55.000 5.77 0.00 0.00 3.86
2697 4532 0.319986 TGTATGTTCGCGTGCCTCAA 60.320 50.000 5.77 0.00 0.00 3.02
2698 4533 1.006832 GTATGTTCGCGTGCCTCAAT 58.993 50.000 5.77 0.00 0.00 2.57
2699 4534 1.396996 GTATGTTCGCGTGCCTCAATT 59.603 47.619 5.77 0.00 0.00 2.32
2700 4535 0.881118 ATGTTCGCGTGCCTCAATTT 59.119 45.000 5.77 0.00 0.00 1.82
2701 4536 0.665835 TGTTCGCGTGCCTCAATTTT 59.334 45.000 5.77 0.00 0.00 1.82
2702 4537 1.066303 TGTTCGCGTGCCTCAATTTTT 59.934 42.857 5.77 0.00 0.00 1.94
2703 4538 1.713932 GTTCGCGTGCCTCAATTTTTC 59.286 47.619 5.77 0.00 0.00 2.29
2704 4539 1.234821 TCGCGTGCCTCAATTTTTCT 58.765 45.000 5.77 0.00 0.00 2.52
2705 4540 1.196808 TCGCGTGCCTCAATTTTTCTC 59.803 47.619 5.77 0.00 0.00 2.87
2706 4541 1.729149 CGCGTGCCTCAATTTTTCTCC 60.729 52.381 0.00 0.00 0.00 3.71
2707 4542 1.269448 GCGTGCCTCAATTTTTCTCCA 59.731 47.619 0.00 0.00 0.00 3.86
2708 4543 2.288152 GCGTGCCTCAATTTTTCTCCAA 60.288 45.455 0.00 0.00 0.00 3.53
2709 4544 3.798548 GCGTGCCTCAATTTTTCTCCAAA 60.799 43.478 0.00 0.00 0.00 3.28
2710 4545 3.983344 CGTGCCTCAATTTTTCTCCAAAG 59.017 43.478 0.00 0.00 0.00 2.77
2711 4546 4.499696 CGTGCCTCAATTTTTCTCCAAAGT 60.500 41.667 0.00 0.00 0.00 2.66
2712 4547 4.984785 GTGCCTCAATTTTTCTCCAAAGTC 59.015 41.667 0.00 0.00 0.00 3.01
2713 4548 4.039124 TGCCTCAATTTTTCTCCAAAGTCC 59.961 41.667 0.00 0.00 0.00 3.85
2714 4549 4.798574 CCTCAATTTTTCTCCAAAGTCCG 58.201 43.478 0.00 0.00 0.00 4.79
2715 4550 4.518970 CCTCAATTTTTCTCCAAAGTCCGA 59.481 41.667 0.00 0.00 0.00 4.55
2716 4551 5.335191 CCTCAATTTTTCTCCAAAGTCCGAG 60.335 44.000 0.00 0.00 0.00 4.63
2789 4624 2.431057 ACGTCTAACCATCACCATCTCC 59.569 50.000 0.00 0.00 0.00 3.71
2790 4625 2.543861 CGTCTAACCATCACCATCTCCG 60.544 54.545 0.00 0.00 0.00 4.63
2815 4650 7.413988 CGAGTCACTCCATGCATAATTTACAAA 60.414 37.037 0.00 0.00 0.00 2.83
2816 4651 7.538575 AGTCACTCCATGCATAATTTACAAAC 58.461 34.615 0.00 0.00 0.00 2.93
2817 4652 6.751888 GTCACTCCATGCATAATTTACAAACC 59.248 38.462 0.00 0.00 0.00 3.27
2818 4653 6.435591 TCACTCCATGCATAATTTACAAACCA 59.564 34.615 0.00 0.00 0.00 3.67
2957 4792 1.063266 TGGTTCCAGGTTCCAGCTTTT 60.063 47.619 2.03 0.00 0.00 2.27
2958 4793 2.039418 GGTTCCAGGTTCCAGCTTTTT 58.961 47.619 0.00 0.00 0.00 1.94
2978 4813 3.439895 TTTTTGCGGGGAAAACTACAC 57.560 42.857 0.00 0.00 0.00 2.90
2979 4814 2.054232 TTTGCGGGGAAAACTACACA 57.946 45.000 0.00 0.00 0.00 3.72
2980 4815 1.310904 TTGCGGGGAAAACTACACAC 58.689 50.000 0.00 0.00 0.00 3.82
2981 4816 0.535553 TGCGGGGAAAACTACACACC 60.536 55.000 0.00 0.00 0.00 4.16
2982 4817 1.571215 GCGGGGAAAACTACACACCG 61.571 60.000 0.00 0.00 42.47 4.94
2983 4818 0.952010 CGGGGAAAACTACACACCGG 60.952 60.000 0.00 0.00 36.45 5.28
2984 4819 0.109153 GGGGAAAACTACACACCGGT 59.891 55.000 0.00 0.00 0.00 5.28
2985 4820 1.347378 GGGGAAAACTACACACCGGTA 59.653 52.381 6.87 0.00 0.00 4.02
2986 4821 2.026915 GGGGAAAACTACACACCGGTAT 60.027 50.000 6.87 0.00 0.00 2.73
2987 4822 3.197549 GGGGAAAACTACACACCGGTATA 59.802 47.826 6.87 0.00 0.00 1.47
2988 4823 4.436332 GGGAAAACTACACACCGGTATAG 58.564 47.826 6.87 12.36 0.00 1.31
2989 4824 4.081476 GGGAAAACTACACACCGGTATAGT 60.081 45.833 6.87 13.06 0.00 2.12
2990 4825 5.127031 GGGAAAACTACACACCGGTATAGTA 59.873 44.000 20.04 15.70 0.00 1.82
2991 4826 6.036470 GGAAAACTACACACCGGTATAGTAC 58.964 44.000 20.04 15.24 0.00 2.73
2992 4827 6.127619 GGAAAACTACACACCGGTATAGTACT 60.128 42.308 20.04 12.89 0.00 2.73
2993 4828 5.824904 AACTACACACCGGTATAGTACTG 57.175 43.478 20.04 10.23 34.81 2.74
2994 4829 3.629398 ACTACACACCGGTATAGTACTGC 59.371 47.826 18.89 0.00 33.68 4.40
2995 4830 1.402968 ACACACCGGTATAGTACTGCG 59.597 52.381 6.87 0.00 33.68 5.18
2996 4831 1.402968 CACACCGGTATAGTACTGCGT 59.597 52.381 6.87 0.00 33.68 5.24
2997 4832 1.402968 ACACCGGTATAGTACTGCGTG 59.597 52.381 6.87 5.16 39.74 5.34
2998 4833 0.383231 ACCGGTATAGTACTGCGTGC 59.617 55.000 4.49 0.00 33.68 5.34
2999 4834 0.659417 CCGGTATAGTACTGCGTGCG 60.659 60.000 5.39 0.00 33.68 5.34
3000 4835 1.266786 CGGTATAGTACTGCGTGCGC 61.267 60.000 5.39 9.85 42.35 6.09
3001 4836 0.030369 GGTATAGTACTGCGTGCGCT 59.970 55.000 17.49 0.87 42.51 5.92
3002 4837 1.121240 GTATAGTACTGCGTGCGCTG 58.879 55.000 19.02 19.02 44.06 5.18
3003 4838 0.594028 TATAGTACTGCGTGCGCTGC 60.594 55.000 20.20 16.67 42.60 5.25
3004 4839 2.284798 ATAGTACTGCGTGCGCTGCT 62.285 55.000 22.29 13.64 42.60 4.24
3005 4840 2.867333 TAGTACTGCGTGCGCTGCTC 62.867 60.000 22.29 14.07 42.60 4.26
3015 4850 2.202492 CGCTGCTCGAACGCTAGT 60.202 61.111 0.00 0.00 41.67 2.57
3016 4851 1.801913 CGCTGCTCGAACGCTAGTT 60.802 57.895 0.00 0.00 44.47 2.24
3017 4852 1.344942 CGCTGCTCGAACGCTAGTTT 61.345 55.000 0.00 0.00 41.34 2.66
3018 4853 0.093705 GCTGCTCGAACGCTAGTTTG 59.906 55.000 0.00 0.00 41.34 2.93
3019 4854 1.419374 CTGCTCGAACGCTAGTTTGT 58.581 50.000 0.00 0.00 41.34 2.83
3020 4855 1.792949 CTGCTCGAACGCTAGTTTGTT 59.207 47.619 0.00 0.00 41.34 2.83
3021 4856 2.206750 TGCTCGAACGCTAGTTTGTTT 58.793 42.857 0.00 0.00 41.34 2.83
3022 4857 2.033236 TGCTCGAACGCTAGTTTGTTTG 60.033 45.455 0.00 0.00 41.34 2.93
3023 4858 2.220133 GCTCGAACGCTAGTTTGTTTGA 59.780 45.455 11.57 11.57 41.34 2.69
3024 4859 4.041240 CTCGAACGCTAGTTTGTTTGAG 57.959 45.455 18.88 18.88 45.29 3.02
3025 4860 2.220133 TCGAACGCTAGTTTGTTTGAGC 59.780 45.455 9.26 0.00 41.34 4.26
3026 4861 2.221055 CGAACGCTAGTTTGTTTGAGCT 59.779 45.455 0.00 0.00 41.34 4.09
3027 4862 3.427528 CGAACGCTAGTTTGTTTGAGCTA 59.572 43.478 0.00 0.00 41.34 3.32
3028 4863 4.433022 CGAACGCTAGTTTGTTTGAGCTAG 60.433 45.833 0.00 0.00 41.34 3.42
3036 4871 8.934507 CTAGTTTGTTTGAGCTAGCTAGTAAT 57.065 34.615 19.38 8.63 0.00 1.89
3037 4872 7.602517 AGTTTGTTTGAGCTAGCTAGTAATG 57.397 36.000 19.38 0.00 0.00 1.90
3038 4873 6.595716 AGTTTGTTTGAGCTAGCTAGTAATGG 59.404 38.462 19.38 0.00 0.00 3.16
3039 4874 4.442706 TGTTTGAGCTAGCTAGTAATGGC 58.557 43.478 19.38 7.43 0.00 4.40
3040 4875 3.371102 TTGAGCTAGCTAGTAATGGCG 57.629 47.619 19.38 0.00 0.00 5.69
3041 4876 1.613925 TGAGCTAGCTAGTAATGGCGG 59.386 52.381 19.38 0.00 0.00 6.13
3042 4877 0.969894 AGCTAGCTAGTAATGGCGGG 59.030 55.000 17.69 0.00 0.00 6.13
3043 4878 0.680061 GCTAGCTAGTAATGGCGGGT 59.320 55.000 21.62 0.00 0.00 5.28
3044 4879 1.891150 GCTAGCTAGTAATGGCGGGTA 59.109 52.381 21.62 0.00 0.00 3.69
3045 4880 2.352519 GCTAGCTAGTAATGGCGGGTAC 60.353 54.545 21.62 0.00 0.00 3.34
3060 4895 1.992170 GGTACCAGTGTAGTCGCTTG 58.008 55.000 7.15 0.00 31.46 4.01
3061 4896 1.271656 GGTACCAGTGTAGTCGCTTGT 59.728 52.381 7.15 0.00 34.99 3.16
3062 4897 2.288640 GGTACCAGTGTAGTCGCTTGTT 60.289 50.000 7.15 0.00 33.27 2.83
3063 4898 1.865865 ACCAGTGTAGTCGCTTGTTG 58.134 50.000 0.00 0.00 31.46 3.33
3064 4899 0.512952 CCAGTGTAGTCGCTTGTTGC 59.487 55.000 0.00 0.00 38.57 4.17
3065 4900 1.502231 CAGTGTAGTCGCTTGTTGCT 58.498 50.000 0.00 0.00 40.11 3.91
3066 4901 1.457303 CAGTGTAGTCGCTTGTTGCTC 59.543 52.381 0.00 0.00 40.11 4.26
3067 4902 0.790814 GTGTAGTCGCTTGTTGCTCC 59.209 55.000 0.00 0.00 40.11 4.70
3068 4903 0.679505 TGTAGTCGCTTGTTGCTCCT 59.320 50.000 0.00 0.00 40.11 3.69
3069 4904 1.070134 TGTAGTCGCTTGTTGCTCCTT 59.930 47.619 0.00 0.00 40.11 3.36
3070 4905 1.461127 GTAGTCGCTTGTTGCTCCTTG 59.539 52.381 0.00 0.00 40.11 3.61
3071 4906 0.179045 AGTCGCTTGTTGCTCCTTGT 60.179 50.000 0.00 0.00 40.11 3.16
3072 4907 0.663153 GTCGCTTGTTGCTCCTTGTT 59.337 50.000 0.00 0.00 40.11 2.83
3073 4908 0.944386 TCGCTTGTTGCTCCTTGTTC 59.056 50.000 0.00 0.00 40.11 3.18
3074 4909 0.662619 CGCTTGTTGCTCCTTGTTCA 59.337 50.000 0.00 0.00 40.11 3.18
3075 4910 1.267806 CGCTTGTTGCTCCTTGTTCAT 59.732 47.619 0.00 0.00 40.11 2.57
3076 4911 2.666619 CGCTTGTTGCTCCTTGTTCATC 60.667 50.000 0.00 0.00 40.11 2.92
3077 4912 2.294233 GCTTGTTGCTCCTTGTTCATCA 59.706 45.455 0.00 0.00 38.95 3.07
3078 4913 3.057033 GCTTGTTGCTCCTTGTTCATCAT 60.057 43.478 0.00 0.00 38.95 2.45
3079 4914 4.482386 CTTGTTGCTCCTTGTTCATCATG 58.518 43.478 0.00 0.00 0.00 3.07
3080 4915 2.821378 TGTTGCTCCTTGTTCATCATGG 59.179 45.455 0.00 0.00 41.14 3.66
3081 4916 1.466856 TGCTCCTTGTTCATCATGGC 58.533 50.000 0.00 0.00 40.06 4.40
3082 4917 1.272037 TGCTCCTTGTTCATCATGGCA 60.272 47.619 0.00 0.00 40.06 4.92
3083 4918 2.029623 GCTCCTTGTTCATCATGGCAT 58.970 47.619 0.00 0.00 40.06 4.40
3084 4919 2.429610 GCTCCTTGTTCATCATGGCATT 59.570 45.455 0.00 0.00 40.06 3.56
3085 4920 3.118884 GCTCCTTGTTCATCATGGCATTT 60.119 43.478 0.00 0.00 40.06 2.32
3086 4921 4.430007 CTCCTTGTTCATCATGGCATTTG 58.570 43.478 0.00 0.00 40.06 2.32
3087 4922 3.833650 TCCTTGTTCATCATGGCATTTGT 59.166 39.130 0.00 0.00 40.06 2.83
3088 4923 4.283978 TCCTTGTTCATCATGGCATTTGTT 59.716 37.500 0.00 0.00 40.06 2.83
3089 4924 5.479724 TCCTTGTTCATCATGGCATTTGTTA 59.520 36.000 0.00 0.00 40.06 2.41
3090 4925 5.808540 CCTTGTTCATCATGGCATTTGTTAG 59.191 40.000 0.00 0.00 35.18 2.34
3091 4926 4.746729 TGTTCATCATGGCATTTGTTAGC 58.253 39.130 0.00 0.00 0.00 3.09
3092 4927 4.463539 TGTTCATCATGGCATTTGTTAGCT 59.536 37.500 0.00 0.00 0.00 3.32
3093 4928 5.651576 TGTTCATCATGGCATTTGTTAGCTA 59.348 36.000 0.00 0.00 0.00 3.32
3094 4929 5.756195 TCATCATGGCATTTGTTAGCTAC 57.244 39.130 0.00 0.00 0.00 3.58
3095 4930 5.439721 TCATCATGGCATTTGTTAGCTACT 58.560 37.500 0.00 0.00 0.00 2.57
3096 4931 5.297527 TCATCATGGCATTTGTTAGCTACTG 59.702 40.000 0.00 0.00 0.00 2.74
3097 4932 3.378112 TCATGGCATTTGTTAGCTACTGC 59.622 43.478 0.00 0.00 40.05 4.40
3108 4943 2.956469 GCTACTGCTTCAGCTCGAG 58.044 57.895 8.45 8.45 42.66 4.04
3109 4944 0.172352 GCTACTGCTTCAGCTCGAGT 59.828 55.000 15.13 0.00 42.66 4.18
3110 4945 1.402259 GCTACTGCTTCAGCTCGAGTA 59.598 52.381 15.13 0.00 42.66 2.59
3111 4946 2.034053 GCTACTGCTTCAGCTCGAGTAT 59.966 50.000 15.13 0.00 42.66 2.12
3112 4947 3.490078 GCTACTGCTTCAGCTCGAGTATT 60.490 47.826 15.13 0.00 42.66 1.89
3113 4948 3.601443 ACTGCTTCAGCTCGAGTATTT 57.399 42.857 15.13 0.00 42.66 1.40
3114 4949 3.257393 ACTGCTTCAGCTCGAGTATTTG 58.743 45.455 15.13 8.01 42.66 2.32
3115 4950 3.056536 ACTGCTTCAGCTCGAGTATTTGA 60.057 43.478 15.13 10.17 42.66 2.69
3116 4951 3.254060 TGCTTCAGCTCGAGTATTTGAC 58.746 45.455 15.13 3.81 42.66 3.18
3117 4952 3.254060 GCTTCAGCTCGAGTATTTGACA 58.746 45.455 15.13 4.42 38.21 3.58
3118 4953 3.679980 GCTTCAGCTCGAGTATTTGACAA 59.320 43.478 15.13 0.00 38.21 3.18
3119 4954 4.152402 GCTTCAGCTCGAGTATTTGACAAA 59.848 41.667 15.13 2.48 38.21 2.83
3120 4955 5.334105 GCTTCAGCTCGAGTATTTGACAAAA 60.334 40.000 15.13 0.00 38.21 2.44
3121 4956 6.612247 TTCAGCTCGAGTATTTGACAAAAA 57.388 33.333 15.13 0.00 0.00 1.94
3143 4978 6.616237 AAACTACCATATTAGGGGTATCCG 57.384 41.667 0.00 0.00 38.87 4.18
3144 4979 5.280998 ACTACCATATTAGGGGTATCCGT 57.719 43.478 0.00 0.00 38.87 4.69
3145 4980 5.267587 ACTACCATATTAGGGGTATCCGTC 58.732 45.833 0.00 0.00 38.87 4.79
3146 4981 3.447950 ACCATATTAGGGGTATCCGTCC 58.552 50.000 0.00 0.00 41.52 4.79
3147 4982 2.770232 CCATATTAGGGGTATCCGTCCC 59.230 54.545 0.00 0.00 43.90 4.46
3148 4983 3.446968 CATATTAGGGGTATCCGTCCCA 58.553 50.000 0.00 0.00 46.26 4.37
3149 4984 1.725803 ATTAGGGGTATCCGTCCCAC 58.274 55.000 0.00 0.00 46.26 4.61
3150 4985 0.339162 TTAGGGGTATCCGTCCCACA 59.661 55.000 0.00 0.00 46.26 4.17
3151 4986 0.105862 TAGGGGTATCCGTCCCACAG 60.106 60.000 0.00 0.00 46.26 3.66
3152 4987 1.382146 GGGGTATCCGTCCCACAGA 60.382 63.158 3.37 0.00 46.26 3.41
3153 4988 0.979187 GGGGTATCCGTCCCACAGAA 60.979 60.000 3.37 0.00 46.26 3.02
3154 4989 0.177373 GGGTATCCGTCCCACAGAAC 59.823 60.000 0.00 0.00 44.05 3.01
3155 4990 1.192428 GGTATCCGTCCCACAGAACT 58.808 55.000 0.00 0.00 0.00 3.01
3156 4991 2.381911 GGTATCCGTCCCACAGAACTA 58.618 52.381 0.00 0.00 0.00 2.24
3157 4992 2.100418 GGTATCCGTCCCACAGAACTAC 59.900 54.545 0.00 0.00 0.00 2.73
3158 4993 1.192428 ATCCGTCCCACAGAACTACC 58.808 55.000 0.00 0.00 0.00 3.18
3159 4994 0.178955 TCCGTCCCACAGAACTACCA 60.179 55.000 0.00 0.00 0.00 3.25
3160 4995 0.037605 CCGTCCCACAGAACTACCAC 60.038 60.000 0.00 0.00 0.00 4.16
3161 4996 0.966920 CGTCCCACAGAACTACCACT 59.033 55.000 0.00 0.00 0.00 4.00
3162 4997 1.343465 CGTCCCACAGAACTACCACTT 59.657 52.381 0.00 0.00 0.00 3.16
3163 4998 2.224209 CGTCCCACAGAACTACCACTTT 60.224 50.000 0.00 0.00 0.00 2.66
3164 4999 3.400255 GTCCCACAGAACTACCACTTTC 58.600 50.000 0.00 0.00 0.00 2.62
3165 5000 3.042682 TCCCACAGAACTACCACTTTCA 58.957 45.455 0.00 0.00 0.00 2.69
3166 5001 3.456644 TCCCACAGAACTACCACTTTCAA 59.543 43.478 0.00 0.00 0.00 2.69
3167 5002 4.080243 TCCCACAGAACTACCACTTTCAAA 60.080 41.667 0.00 0.00 0.00 2.69
3168 5003 4.642885 CCCACAGAACTACCACTTTCAAAA 59.357 41.667 0.00 0.00 0.00 2.44
3169 5004 5.126384 CCCACAGAACTACCACTTTCAAAAA 59.874 40.000 0.00 0.00 0.00 1.94
3207 5042 9.673454 ACTACCGAAAATTTCTAATTTTGTGAC 57.327 29.630 13.18 1.19 32.03 3.67
3208 5043 9.672086 CTACCGAAAATTTCTAATTTTGTGACA 57.328 29.630 13.18 0.00 32.03 3.58
3209 5044 8.934507 ACCGAAAATTTCTAATTTTGTGACAA 57.065 26.923 13.18 0.00 32.03 3.18
3210 5045 9.372369 ACCGAAAATTTCTAATTTTGTGACAAA 57.628 25.926 6.66 6.66 32.03 2.83
3230 5065 4.929819 AAAAACTACCAAGTCGCCATTT 57.070 36.364 0.00 0.00 33.75 2.32
3232 5067 5.622770 AAAACTACCAAGTCGCCATTTAG 57.377 39.130 0.00 0.00 33.75 1.85
3233 5068 2.629051 ACTACCAAGTCGCCATTTAGC 58.371 47.619 0.00 0.00 0.00 3.09
3234 5069 1.940613 CTACCAAGTCGCCATTTAGCC 59.059 52.381 0.00 0.00 0.00 3.93
3235 5070 1.024579 ACCAAGTCGCCATTTAGCCG 61.025 55.000 0.00 0.00 0.00 5.52
3236 5071 1.024579 CCAAGTCGCCATTTAGCCGT 61.025 55.000 0.00 0.00 0.00 5.68
3237 5072 0.802494 CAAGTCGCCATTTAGCCGTT 59.198 50.000 0.00 0.00 0.00 4.44
3238 5073 1.199097 CAAGTCGCCATTTAGCCGTTT 59.801 47.619 0.00 0.00 0.00 3.60
3239 5074 1.530323 AGTCGCCATTTAGCCGTTTT 58.470 45.000 0.00 0.00 0.00 2.43
3240 5075 2.702261 AGTCGCCATTTAGCCGTTTTA 58.298 42.857 0.00 0.00 0.00 1.52
3241 5076 3.075884 AGTCGCCATTTAGCCGTTTTAA 58.924 40.909 0.00 0.00 0.00 1.52
3242 5077 3.120095 AGTCGCCATTTAGCCGTTTTAAC 60.120 43.478 0.00 0.00 0.00 2.01
3243 5078 2.162008 TCGCCATTTAGCCGTTTTAACC 59.838 45.455 0.00 0.00 0.00 2.85
3244 5079 2.521996 GCCATTTAGCCGTTTTAACCG 58.478 47.619 0.00 0.00 0.00 4.44
3245 5080 2.521996 CCATTTAGCCGTTTTAACCGC 58.478 47.619 0.00 0.00 34.11 5.68
3246 5081 2.162809 CCATTTAGCCGTTTTAACCGCT 59.837 45.455 11.94 11.94 43.86 5.52
3247 5082 3.366577 CCATTTAGCCGTTTTAACCGCTT 60.367 43.478 12.38 0.00 42.14 4.68
3248 5083 4.142643 CCATTTAGCCGTTTTAACCGCTTA 60.143 41.667 12.38 2.95 42.14 3.09
3249 5084 5.392286 CATTTAGCCGTTTTAACCGCTTAA 58.608 37.500 12.38 10.48 42.14 1.85
3250 5085 2.975410 AGCCGTTTTAACCGCTTAAC 57.025 45.000 3.18 0.00 39.81 2.01
3251 5086 2.497138 AGCCGTTTTAACCGCTTAACT 58.503 42.857 3.18 0.00 39.81 2.24
3252 5087 2.224784 AGCCGTTTTAACCGCTTAACTG 59.775 45.455 3.18 0.00 39.81 3.16
3253 5088 2.223845 GCCGTTTTAACCGCTTAACTGA 59.776 45.455 0.00 0.00 31.77 3.41
3254 5089 3.802423 CCGTTTTAACCGCTTAACTGAC 58.198 45.455 0.00 0.00 0.00 3.51
3255 5090 3.248125 CCGTTTTAACCGCTTAACTGACA 59.752 43.478 0.00 0.00 0.00 3.58
3256 5091 4.451557 CGTTTTAACCGCTTAACTGACAG 58.548 43.478 0.00 0.00 0.00 3.51
3257 5092 4.609783 CGTTTTAACCGCTTAACTGACAGG 60.610 45.833 7.51 0.00 0.00 4.00
3258 5093 2.754946 TAACCGCTTAACTGACAGGG 57.245 50.000 7.51 0.00 0.00 4.45
3259 5094 1.053424 AACCGCTTAACTGACAGGGA 58.947 50.000 7.51 0.00 0.00 4.20
3260 5095 1.276622 ACCGCTTAACTGACAGGGAT 58.723 50.000 7.51 0.00 0.00 3.85
3261 5096 1.066143 ACCGCTTAACTGACAGGGATG 60.066 52.381 7.51 0.00 0.00 3.51
3262 5097 1.656652 CGCTTAACTGACAGGGATGG 58.343 55.000 7.51 0.00 0.00 3.51
3263 5098 1.383523 GCTTAACTGACAGGGATGGC 58.616 55.000 7.51 1.07 0.00 4.40
3264 5099 2.019156 GCTTAACTGACAGGGATGGCC 61.019 57.143 7.51 0.00 0.00 5.36
3323 5158 4.796231 CCGCTCGCTGCCGTTAGT 62.796 66.667 0.00 0.00 38.78 2.24
3324 5159 3.545481 CGCTCGCTGCCGTTAGTG 61.545 66.667 0.00 0.00 38.78 2.74
3325 5160 3.188786 GCTCGCTGCCGTTAGTGG 61.189 66.667 0.00 0.00 35.15 4.00
3333 5168 4.832608 CCGTTAGTGGCCCGGCTC 62.833 72.222 9.86 3.20 34.62 4.70
3345 5180 4.796231 CGGCTCGGTCGGAACCAG 62.796 72.222 1.30 0.00 46.86 4.00
3348 5183 3.691342 CTCGGTCGGAACCAGCCA 61.691 66.667 0.00 0.00 46.86 4.75
3349 5184 3.234630 CTCGGTCGGAACCAGCCAA 62.235 63.158 0.00 0.00 46.86 4.52
3350 5185 2.742372 CGGTCGGAACCAGCCAAG 60.742 66.667 0.00 0.00 46.86 3.61
3351 5186 2.359975 GGTCGGAACCAGCCAAGG 60.360 66.667 0.00 0.00 45.68 3.61
3352 5187 2.359975 GTCGGAACCAGCCAAGGG 60.360 66.667 0.00 0.00 0.00 3.95
3362 5197 2.203625 GCCAAGGGCCAGGTCAAA 60.204 61.111 15.37 0.00 44.06 2.69
3363 5198 1.836604 GCCAAGGGCCAGGTCAAAA 60.837 57.895 15.37 0.00 44.06 2.44
3364 5199 2.049435 CCAAGGGCCAGGTCAAAAC 58.951 57.895 6.18 0.00 0.00 2.43
3365 5200 1.659794 CAAGGGCCAGGTCAAAACG 59.340 57.895 6.18 0.00 0.00 3.60
3366 5201 0.821711 CAAGGGCCAGGTCAAAACGA 60.822 55.000 6.18 0.00 0.00 3.85
3367 5202 0.822121 AAGGGCCAGGTCAAAACGAC 60.822 55.000 6.18 0.00 44.57 4.34
3374 5209 3.237290 GTCAAAACGACCGACCGG 58.763 61.111 6.94 6.94 38.85 5.28
3375 5210 2.662527 TCAAAACGACCGACCGGC 60.663 61.111 8.55 0.82 39.32 6.13
3376 5211 3.719144 CAAAACGACCGACCGGCC 61.719 66.667 8.55 0.00 39.32 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.541143 GGAAAAATCCTTGTGTCATTTAGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
47 48 8.700051 TGGAAAAATCCTTGTGTCATTTAGAAA 58.300 29.630 0.00 0.00 0.00 2.52
49 50 7.831691 TGGAAAAATCCTTGTGTCATTTAGA 57.168 32.000 0.00 0.00 0.00 2.10
50 51 8.090214 ACATGGAAAAATCCTTGTGTCATTTAG 58.910 33.333 13.65 0.00 43.64 1.85
51 52 7.961351 ACATGGAAAAATCCTTGTGTCATTTA 58.039 30.769 13.65 0.00 43.64 1.40
52 53 6.829849 ACATGGAAAAATCCTTGTGTCATTT 58.170 32.000 13.65 0.00 43.64 2.32
56 57 5.841810 TGAACATGGAAAAATCCTTGTGTC 58.158 37.500 14.76 13.79 44.25 3.67
57 58 5.867903 TGAACATGGAAAAATCCTTGTGT 57.132 34.783 14.76 6.32 44.25 3.72
58 59 6.514947 TCTTGAACATGGAAAAATCCTTGTG 58.485 36.000 14.76 5.34 44.25 3.33
60 61 8.611654 AATTCTTGAACATGGAAAAATCCTTG 57.388 30.769 8.68 8.68 39.83 3.61
61 62 7.879677 GGAATTCTTGAACATGGAAAAATCCTT 59.120 33.333 5.23 0.00 0.00 3.36
62 63 7.236225 AGGAATTCTTGAACATGGAAAAATCCT 59.764 33.333 5.23 3.54 31.79 3.24
64 65 8.837788 AAGGAATTCTTGAACATGGAAAAATC 57.162 30.769 5.23 0.00 33.76 2.17
65 66 8.431222 TGAAGGAATTCTTGAACATGGAAAAAT 58.569 29.630 5.23 0.00 35.50 1.82
67 68 7.287466 TCTGAAGGAATTCTTGAACATGGAAAA 59.713 33.333 5.23 0.00 35.50 2.29
68 69 6.777091 TCTGAAGGAATTCTTGAACATGGAAA 59.223 34.615 5.23 0.00 35.50 3.13
69 70 6.306199 TCTGAAGGAATTCTTGAACATGGAA 58.694 36.000 5.23 0.00 35.50 3.53
70 71 5.879763 TCTGAAGGAATTCTTGAACATGGA 58.120 37.500 5.23 0.00 35.50 3.41
71 72 5.942236 TCTCTGAAGGAATTCTTGAACATGG 59.058 40.000 5.23 0.00 35.50 3.66
72 73 6.093771 CCTCTCTGAAGGAATTCTTGAACATG 59.906 42.308 5.23 0.00 38.87 3.21
73 74 6.179040 CCTCTCTGAAGGAATTCTTGAACAT 58.821 40.000 5.23 0.00 38.87 2.71
75 76 4.940654 CCCTCTCTGAAGGAATTCTTGAAC 59.059 45.833 5.23 0.00 38.87 3.18
76 77 4.599241 ACCCTCTCTGAAGGAATTCTTGAA 59.401 41.667 5.23 0.00 38.87 2.69
77 78 4.171234 ACCCTCTCTGAAGGAATTCTTGA 58.829 43.478 5.23 0.00 38.87 3.02
78 79 4.224818 AGACCCTCTCTGAAGGAATTCTTG 59.775 45.833 5.23 0.00 38.87 3.02
79 80 4.434195 AGACCCTCTCTGAAGGAATTCTT 58.566 43.478 5.23 0.00 38.87 2.52
97 98 4.964593 TGGTGTTTACTTAGGTTCAGACC 58.035 43.478 0.00 0.00 46.92 3.85
98 99 6.485648 ACAATGGTGTTTACTTAGGTTCAGAC 59.514 38.462 0.00 0.00 32.58 3.51
100 101 6.347402 CGACAATGGTGTTTACTTAGGTTCAG 60.347 42.308 0.00 0.00 38.41 3.02
101 102 5.467399 CGACAATGGTGTTTACTTAGGTTCA 59.533 40.000 0.00 0.00 38.41 3.18
107 108 5.178623 CAGAAGCGACAATGGTGTTTACTTA 59.821 40.000 0.00 0.00 38.41 2.24
109 110 3.498397 CAGAAGCGACAATGGTGTTTACT 59.502 43.478 0.00 0.00 38.41 2.24
110 111 3.250040 ACAGAAGCGACAATGGTGTTTAC 59.750 43.478 0.00 0.00 38.41 2.01
156 157 2.092914 GTCCCACATAGGAAGTCCCAAG 60.093 54.545 0.00 0.00 41.22 3.61
166 167 1.410850 ATCCGGCAGTCCCACATAGG 61.411 60.000 0.00 0.00 37.03 2.57
171 172 1.002624 TCAAATCCGGCAGTCCCAC 60.003 57.895 0.00 0.00 0.00 4.61
173 174 1.749258 GGTCAAATCCGGCAGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
174 175 1.749258 GGGTCAAATCCGGCAGTCC 60.749 63.158 0.00 0.00 0.00 3.85
188 190 3.632643 TTTTTATAGGGTGACGGGGTC 57.367 47.619 0.00 0.00 0.00 4.46
191 193 4.574828 CACTCATTTTTATAGGGTGACGGG 59.425 45.833 0.00 0.00 0.00 5.28
240 242 3.646611 TGTTGCCATCATTGAGTTGTG 57.353 42.857 0.00 0.00 0.00 3.33
248 250 4.088634 ACAGTGGTTATGTTGCCATCATT 58.911 39.130 0.00 0.00 37.09 2.57
254 256 2.089201 GGGTACAGTGGTTATGTTGCC 58.911 52.381 0.00 0.00 32.02 4.52
261 263 4.359105 AGCAGATAAGGGTACAGTGGTTA 58.641 43.478 0.00 0.00 0.00 2.85
349 353 7.924940 TGCTGTTATTTTTGATATACGCATGA 58.075 30.769 0.00 0.00 0.00 3.07
361 367 8.853345 GTCTTCACATGTATGCTGTTATTTTTG 58.147 33.333 0.00 0.00 0.00 2.44
372 378 4.027621 CGTCGTTAGTCTTCACATGTATGC 60.028 45.833 0.00 0.00 0.00 3.14
384 390 0.617413 TCTCCCTCCGTCGTTAGTCT 59.383 55.000 0.00 0.00 0.00 3.24
389 395 3.069318 GGCTCTCCCTCCGTCGTT 61.069 66.667 0.00 0.00 0.00 3.85
419 425 6.145048 CGTACGGTTCAACTTTACTTGATCTT 59.855 38.462 7.57 0.00 30.19 2.40
452 458 3.976793 TGACAATCGACCGTATAGGAC 57.023 47.619 0.00 0.00 45.00 3.85
455 461 5.522460 ACCAAAATGACAATCGACCGTATAG 59.478 40.000 0.00 0.00 0.00 1.31
456 462 5.421277 ACCAAAATGACAATCGACCGTATA 58.579 37.500 0.00 0.00 0.00 1.47
457 463 4.258543 ACCAAAATGACAATCGACCGTAT 58.741 39.130 0.00 0.00 0.00 3.06
458 464 3.666274 ACCAAAATGACAATCGACCGTA 58.334 40.909 0.00 0.00 0.00 4.02
479 485 7.553760 GGAACCGAGGGAGTAATAAATAAACAA 59.446 37.037 0.00 0.00 0.00 2.83
487 493 5.502089 TTTTGGAACCGAGGGAGTAATAA 57.498 39.130 0.00 0.00 0.00 1.40
488 494 5.703730 ATTTTGGAACCGAGGGAGTAATA 57.296 39.130 0.00 0.00 0.00 0.98
490 496 4.533311 AGTATTTTGGAACCGAGGGAGTAA 59.467 41.667 0.00 0.00 0.00 2.24
491 497 4.098894 AGTATTTTGGAACCGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
492 498 2.910977 AGTATTTTGGAACCGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
495 501 3.418047 ACAAGTATTTTGGAACCGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
496 502 4.324267 AGACAAGTATTTTGGAACCGAGG 58.676 43.478 0.00 0.00 0.00 4.63
497 503 5.941948 AAGACAAGTATTTTGGAACCGAG 57.058 39.130 0.00 0.00 0.00 4.63
498 504 6.059484 AGAAAGACAAGTATTTTGGAACCGA 58.941 36.000 0.00 0.00 0.00 4.69
499 505 6.313744 AGAAAGACAAGTATTTTGGAACCG 57.686 37.500 0.00 0.00 0.00 4.44
500 506 7.575155 GCCTAGAAAGACAAGTATTTTGGAACC 60.575 40.741 0.00 0.00 0.00 3.62
501 507 7.040686 TGCCTAGAAAGACAAGTATTTTGGAAC 60.041 37.037 0.00 0.00 0.00 3.62
502 508 7.001674 TGCCTAGAAAGACAAGTATTTTGGAA 58.998 34.615 0.00 0.96 0.00 3.53
503 509 6.539173 TGCCTAGAAAGACAAGTATTTTGGA 58.461 36.000 0.00 0.00 0.00 3.53
504 510 6.817765 TGCCTAGAAAGACAAGTATTTTGG 57.182 37.500 0.00 0.48 0.00 3.28
505 511 9.346725 GAAATGCCTAGAAAGACAAGTATTTTG 57.653 33.333 0.00 0.00 0.00 2.44
509 515 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
510 516 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
511 517 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
512 518 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
513 519 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
514 520 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
515 521 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
516 522 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
517 523 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
518 524 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
519 525 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
520 526 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
521 527 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
522 528 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
524 530 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
525 531 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
526 532 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
528 534 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
530 536 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
531 537 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
535 541 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
546 552 9.549078 TTTAAAATATGTCTGCATACATCCGTA 57.451 29.630 19.80 4.61 40.05 4.02
548 554 8.559536 ACTTTAAAATATGTCTGCATACATCCG 58.440 33.333 19.80 5.19 40.05 4.18
570 576 7.968405 GGCGTAAAATGAATGAATCTACACTTT 59.032 33.333 0.00 0.00 0.00 2.66
571 577 7.472543 GGCGTAAAATGAATGAATCTACACTT 58.527 34.615 0.00 0.00 0.00 3.16
572 578 6.238103 CGGCGTAAAATGAATGAATCTACACT 60.238 38.462 0.00 0.00 0.00 3.55
573 579 5.901884 CGGCGTAAAATGAATGAATCTACAC 59.098 40.000 0.00 0.00 0.00 2.90
575 581 6.044512 ACGGCGTAAAATGAATGAATCTAC 57.955 37.500 12.58 0.00 0.00 2.59
576 582 7.439955 ACATACGGCGTAAAATGAATGAATCTA 59.560 33.333 24.81 0.00 0.00 1.98
577 583 6.260050 ACATACGGCGTAAAATGAATGAATCT 59.740 34.615 24.81 0.00 0.00 2.40
578 584 6.427150 ACATACGGCGTAAAATGAATGAATC 58.573 36.000 24.81 0.00 0.00 2.52
582 588 6.019398 TGACTACATACGGCGTAAAATGAATG 60.019 38.462 24.81 18.31 0.00 2.67
583 589 6.044046 TGACTACATACGGCGTAAAATGAAT 58.956 36.000 24.81 9.60 0.00 2.57
585 591 4.996344 TGACTACATACGGCGTAAAATGA 58.004 39.130 24.81 1.27 0.00 2.57
586 592 5.900339 ATGACTACATACGGCGTAAAATG 57.100 39.130 24.81 20.49 34.71 2.32
588 594 5.638657 ACAAATGACTACATACGGCGTAAAA 59.361 36.000 24.81 11.12 35.50 1.52
589 595 5.170021 ACAAATGACTACATACGGCGTAAA 58.830 37.500 24.81 11.48 35.50 2.01
590 596 4.746729 ACAAATGACTACATACGGCGTAA 58.253 39.130 24.81 6.81 35.50 3.18
593 599 3.615056 TCAACAAATGACTACATACGGCG 59.385 43.478 4.80 4.80 35.50 6.46
594 600 5.539582 TTCAACAAATGACTACATACGGC 57.460 39.130 0.00 0.00 37.92 5.68
596 602 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
600 606 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
603 609 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
604 610 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
609 615 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
619 625 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
620 626 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
621 627 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
623 629 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
624 630 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
625 631 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
628 634 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
633 639 7.395489 TCATATACTCCCTCCGTTCCTAAATAC 59.605 40.741 0.00 0.00 0.00 1.89
635 641 6.320518 TCATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
636 642 5.708544 TCATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
637 643 5.329191 TCATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
638 644 5.531753 ATCATATACTCCCTCCGTTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
639 645 3.897657 TCATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
640 646 5.262804 ACTATCATATACTCCCTCCGTTCC 58.737 45.833 0.00 0.00 0.00 3.62
641 647 9.796180 ATATACTATCATATACTCCCTCCGTTC 57.204 37.037 0.00 0.00 0.00 3.95
642 648 9.575868 CATATACTATCATATACTCCCTCCGTT 57.424 37.037 0.00 0.00 0.00 4.44
643 649 8.946248 TCATATACTATCATATACTCCCTCCGT 58.054 37.037 0.00 0.00 0.00 4.69
644 650 9.967451 ATCATATACTATCATATACTCCCTCCG 57.033 37.037 0.00 0.00 0.00 4.63
657 663 8.031277 GCATGGCGATCATATCATATACTATCA 58.969 37.037 0.00 0.00 34.12 2.15
658 664 7.490725 GGCATGGCGATCATATCATATACTATC 59.509 40.741 2.41 0.00 34.12 2.08
659 665 7.326454 GGCATGGCGATCATATCATATACTAT 58.674 38.462 2.41 0.00 34.12 2.12
660 666 6.570378 CGGCATGGCGATCATATCATATACTA 60.570 42.308 35.61 0.00 34.12 1.82
712 718 1.382163 GTACGTTTTGTTCAGCGTGC 58.618 50.000 0.00 0.00 38.10 5.34
739 746 4.383602 TGAAAAAGAGCGCGCGGC 62.384 61.111 33.06 23.14 44.05 6.53
801 815 7.148306 GCACGGGAGAGATAAAACATTCTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
872 893 2.441750 AGTTCAGGAGGTTTGGCTTACA 59.558 45.455 0.00 0.00 0.00 2.41
875 896 1.494721 TGAGTTCAGGAGGTTTGGCTT 59.505 47.619 0.00 0.00 0.00 4.35
896 917 7.168905 TCTACTTCTGACACTAGACAATGAGA 58.831 38.462 0.00 0.00 0.00 3.27
912 933 1.470494 TCTGCACTCGCTCTACTTCTG 59.530 52.381 0.00 0.00 39.64 3.02
978 1023 1.028130 CTGGCTAGCTGAGATCGACA 58.972 55.000 15.72 0.00 0.00 4.35
979 1024 0.318614 GCTGGCTAGCTGAGATCGAC 60.319 60.000 15.78 0.00 46.57 4.20
980 1025 2.037053 GCTGGCTAGCTGAGATCGA 58.963 57.895 15.78 0.00 46.57 3.59
981 1026 4.651585 GCTGGCTAGCTGAGATCG 57.348 61.111 15.78 0.00 46.57 3.69
1032 1375 2.885135 TGAAAGCCATGATGACCAGT 57.115 45.000 0.00 0.00 0.00 4.00
1296 1648 5.470047 ACAAACTACTAGTAGCAACAGCT 57.530 39.130 26.54 5.56 42.33 4.24
1297 1649 5.285607 CGTACAAACTACTAGTAGCAACAGC 59.714 44.000 26.54 13.69 36.66 4.40
1313 1669 5.235305 TCTAATACTCGGACCGTACAAAC 57.765 43.478 14.79 0.00 0.00 2.93
1442 1851 9.883142 GCTGAAGAATAGGAACATATATAGCTT 57.117 33.333 0.00 0.00 0.00 3.74
1443 1852 8.482128 GGCTGAAGAATAGGAACATATATAGCT 58.518 37.037 0.00 0.00 0.00 3.32
1444 1853 7.713073 GGGCTGAAGAATAGGAACATATATAGC 59.287 40.741 0.00 0.00 0.00 2.97
1445 1854 8.207545 GGGGCTGAAGAATAGGAACATATATAG 58.792 40.741 0.00 0.00 0.00 1.31
1446 1855 7.682459 TGGGGCTGAAGAATAGGAACATATATA 59.318 37.037 0.00 0.00 0.00 0.86
1447 1856 6.505344 TGGGGCTGAAGAATAGGAACATATAT 59.495 38.462 0.00 0.00 0.00 0.86
1448 1857 5.849475 TGGGGCTGAAGAATAGGAACATATA 59.151 40.000 0.00 0.00 0.00 0.86
1449 1858 4.665009 TGGGGCTGAAGAATAGGAACATAT 59.335 41.667 0.00 0.00 0.00 1.78
1479 1933 8.134905 AGTCGTACGTTCTCAACTTAAATTTT 57.865 30.769 16.05 0.00 0.00 1.82
1480 1934 7.704789 AGTCGTACGTTCTCAACTTAAATTT 57.295 32.000 16.05 0.00 0.00 1.82
1488 1942 4.501921 AGTGAAAAGTCGTACGTTCTCAAC 59.498 41.667 16.05 4.72 0.00 3.18
1493 1947 6.968904 TGGATATAGTGAAAAGTCGTACGTTC 59.031 38.462 16.05 11.89 0.00 3.95
1496 1950 6.971184 ACTTGGATATAGTGAAAAGTCGTACG 59.029 38.462 9.53 9.53 0.00 3.67
1656 2965 3.695606 GAGACTCCTGCGCCACCA 61.696 66.667 4.18 0.00 0.00 4.17
1884 3342 3.683587 CTGGATGAGCGCGTCGACA 62.684 63.158 17.16 6.92 0.00 4.35
2004 3462 0.835971 TGCAGACCTTGGTGGAGCTA 60.836 55.000 0.00 0.00 39.71 3.32
2331 4151 3.998672 GTGGACCCGTCGAAGGCA 61.999 66.667 12.40 1.83 0.00 4.75
2347 4167 2.771943 TGATAGGGAAGATGAAAGGCGT 59.228 45.455 0.00 0.00 0.00 5.68
2352 4172 6.315393 GCTTTACGTTGATAGGGAAGATGAAA 59.685 38.462 0.00 0.00 0.00 2.69
2429 4262 8.689061 ACATGTACTACATTCCTTGTTATACGA 58.311 33.333 0.00 0.00 36.53 3.43
2437 4270 8.317891 TGTGTAAACATGTACTACATTCCTTG 57.682 34.615 18.60 0.00 36.53 3.61
2443 4276 8.935844 CACTTCATGTGTAAACATGTACTACAT 58.064 33.333 22.62 14.49 45.53 2.29
2513 4346 8.432110 ACAACTCCTTTTCGCAAAAATAAAAT 57.568 26.923 0.00 0.00 34.00 1.82
2518 4351 7.973944 GGATATACAACTCCTTTTCGCAAAAAT 59.026 33.333 0.00 0.00 34.00 1.82
2563 4397 4.701651 ACGCAGATGATGATTTTGGAGAAA 59.298 37.500 0.00 0.00 0.00 2.52
2603 4438 5.356190 ACAATCCTTGTTACATGCAGATGAG 59.644 40.000 0.00 0.00 42.22 2.90
2612 4447 7.446931 TGTCAACATGTACAATCCTTGTTACAT 59.553 33.333 10.59 4.25 42.22 2.29
2687 4522 1.269448 TGGAGAAAAATTGAGGCACGC 59.731 47.619 0.00 0.00 0.00 5.34
2688 4523 3.641437 TTGGAGAAAAATTGAGGCACG 57.359 42.857 0.00 0.00 0.00 5.34
2689 4524 4.948847 ACTTTGGAGAAAAATTGAGGCAC 58.051 39.130 0.00 0.00 0.00 5.01
2690 4525 4.039124 GGACTTTGGAGAAAAATTGAGGCA 59.961 41.667 0.00 0.00 0.00 4.75
2691 4526 4.560128 GGACTTTGGAGAAAAATTGAGGC 58.440 43.478 0.00 0.00 0.00 4.70
2693 4528 5.239525 ACTCGGACTTTGGAGAAAAATTGAG 59.760 40.000 0.00 0.00 34.40 3.02
2694 4529 5.008613 CACTCGGACTTTGGAGAAAAATTGA 59.991 40.000 0.00 0.00 34.40 2.57
2696 4531 5.130350 TCACTCGGACTTTGGAGAAAAATT 58.870 37.500 0.00 0.00 34.40 1.82
2697 4532 4.714632 TCACTCGGACTTTGGAGAAAAAT 58.285 39.130 0.00 0.00 34.40 1.82
2698 4533 4.145365 TCACTCGGACTTTGGAGAAAAA 57.855 40.909 0.00 0.00 34.40 1.94
2699 4534 3.830744 TCACTCGGACTTTGGAGAAAA 57.169 42.857 0.00 0.00 34.40 2.29
2700 4535 4.351874 AATCACTCGGACTTTGGAGAAA 57.648 40.909 0.00 0.00 34.40 2.52
2701 4536 4.351874 AAATCACTCGGACTTTGGAGAA 57.648 40.909 0.00 0.00 34.40 2.87
2702 4537 4.351874 AAAATCACTCGGACTTTGGAGA 57.648 40.909 0.00 0.00 34.40 3.71
2729 4564 9.443323 TCAAAATATGACTCGGACTTATTTTGA 57.557 29.630 24.06 24.06 46.61 2.69
2732 4567 8.398665 GCTTCAAAATATGACTCGGACTTATTT 58.601 33.333 0.00 0.00 37.92 1.40
2733 4568 7.012421 GGCTTCAAAATATGACTCGGACTTATT 59.988 37.037 0.00 0.00 37.92 1.40
2734 4569 6.483640 GGCTTCAAAATATGACTCGGACTTAT 59.516 38.462 0.00 0.00 37.92 1.73
2735 4570 5.815740 GGCTTCAAAATATGACTCGGACTTA 59.184 40.000 0.00 0.00 37.92 2.24
2789 4624 5.523552 TGTAAATTATGCATGGAGTGACTCG 59.476 40.000 10.16 0.00 0.00 4.18
2790 4625 6.925610 TGTAAATTATGCATGGAGTGACTC 57.074 37.500 10.16 3.47 0.00 3.36
2826 4661 2.092968 TGCTTAGTGAAATCCCAGCGAT 60.093 45.455 0.00 0.00 0.00 4.58
2829 4664 2.421424 CACTGCTTAGTGAAATCCCAGC 59.579 50.000 1.30 0.00 42.02 4.85
2936 4771 0.779997 AAGCTGGAACCTGGAACCAT 59.220 50.000 14.41 2.01 33.08 3.55
2958 4793 2.758979 TGTGTAGTTTTCCCCGCAAAAA 59.241 40.909 0.00 0.00 0.00 1.94
2959 4794 2.099427 GTGTGTAGTTTTCCCCGCAAAA 59.901 45.455 0.00 0.00 0.00 2.44
2960 4795 1.677052 GTGTGTAGTTTTCCCCGCAAA 59.323 47.619 0.00 0.00 0.00 3.68
2961 4796 1.310904 GTGTGTAGTTTTCCCCGCAA 58.689 50.000 0.00 0.00 0.00 4.85
2962 4797 0.535553 GGTGTGTAGTTTTCCCCGCA 60.536 55.000 0.00 0.00 0.00 5.69
2963 4798 1.571215 CGGTGTGTAGTTTTCCCCGC 61.571 60.000 0.00 0.00 0.00 6.13
2964 4799 0.952010 CCGGTGTGTAGTTTTCCCCG 60.952 60.000 0.00 0.00 0.00 5.73
2965 4800 0.109153 ACCGGTGTGTAGTTTTCCCC 59.891 55.000 6.12 0.00 0.00 4.81
2966 4801 2.837532 TACCGGTGTGTAGTTTTCCC 57.162 50.000 19.93 0.00 0.00 3.97
2967 4802 5.077134 ACTATACCGGTGTGTAGTTTTCC 57.923 43.478 19.93 0.00 44.21 3.13
2968 4803 6.749118 CAGTACTATACCGGTGTGTAGTTTTC 59.251 42.308 24.66 17.77 44.21 2.29
2969 4804 6.624423 CAGTACTATACCGGTGTGTAGTTTT 58.376 40.000 24.66 15.20 44.21 2.43
2970 4805 5.393461 GCAGTACTATACCGGTGTGTAGTTT 60.393 44.000 24.66 15.45 44.21 2.66
2971 4806 4.096984 GCAGTACTATACCGGTGTGTAGTT 59.903 45.833 24.66 12.07 44.21 2.24
2972 4807 3.629398 GCAGTACTATACCGGTGTGTAGT 59.371 47.826 19.93 22.41 46.96 2.73
2973 4808 3.303593 CGCAGTACTATACCGGTGTGTAG 60.304 52.174 19.93 18.07 40.80 2.74
2974 4809 2.613595 CGCAGTACTATACCGGTGTGTA 59.386 50.000 19.93 14.15 0.00 2.90
2975 4810 1.402968 CGCAGTACTATACCGGTGTGT 59.597 52.381 19.93 15.20 0.00 3.72
2976 4811 1.402968 ACGCAGTACTATACCGGTGTG 59.597 52.381 19.93 9.60 41.94 3.82
2977 4812 1.402968 CACGCAGTACTATACCGGTGT 59.597 52.381 19.93 14.51 41.61 4.16
2978 4813 1.862815 GCACGCAGTACTATACCGGTG 60.863 57.143 19.93 2.36 41.61 4.94
2979 4814 0.383231 GCACGCAGTACTATACCGGT 59.617 55.000 13.98 13.98 41.61 5.28
2980 4815 0.659417 CGCACGCAGTACTATACCGG 60.659 60.000 0.00 0.00 41.61 5.28
2981 4816 1.266786 GCGCACGCAGTACTATACCG 61.267 60.000 10.65 0.00 41.61 4.02
2982 4817 0.030369 AGCGCACGCAGTACTATACC 59.970 55.000 18.24 0.00 41.61 2.73
2983 4818 1.121240 CAGCGCACGCAGTACTATAC 58.879 55.000 18.24 0.00 41.61 1.47
2984 4819 0.594028 GCAGCGCACGCAGTACTATA 60.594 55.000 18.24 0.00 41.61 1.31
2985 4820 1.878522 GCAGCGCACGCAGTACTAT 60.879 57.895 18.24 0.00 41.61 2.12
2986 4821 2.506217 GCAGCGCACGCAGTACTA 60.506 61.111 18.24 0.00 41.61 1.82
2987 4822 4.363990 AGCAGCGCACGCAGTACT 62.364 61.111 21.77 5.61 41.61 2.73
2988 4823 3.843240 GAGCAGCGCACGCAGTAC 61.843 66.667 21.77 3.28 41.61 2.73
2998 4833 1.344942 AAACTAGCGTTCGAGCAGCG 61.345 55.000 0.00 0.00 40.15 5.18
2999 4834 0.093705 CAAACTAGCGTTCGAGCAGC 59.906 55.000 0.00 4.11 40.15 5.25
3000 4835 1.419374 ACAAACTAGCGTTCGAGCAG 58.581 50.000 0.00 0.00 40.15 4.24
3001 4836 1.860676 AACAAACTAGCGTTCGAGCA 58.139 45.000 0.00 0.00 40.15 4.26
3002 4837 2.220133 TCAAACAAACTAGCGTTCGAGC 59.780 45.455 0.00 0.00 31.66 5.03
3003 4838 3.661936 GCTCAAACAAACTAGCGTTCGAG 60.662 47.826 4.61 4.61 31.66 4.04
3004 4839 2.220133 GCTCAAACAAACTAGCGTTCGA 59.780 45.455 0.00 0.00 31.66 3.71
3005 4840 2.221055 AGCTCAAACAAACTAGCGTTCG 59.779 45.455 0.00 0.00 39.94 3.95
3006 4841 3.879932 AGCTCAAACAAACTAGCGTTC 57.120 42.857 0.00 0.00 39.94 3.95
3007 4842 3.186613 GCTAGCTCAAACAAACTAGCGTT 59.813 43.478 7.70 0.00 45.66 4.84
3008 4843 2.737252 GCTAGCTCAAACAAACTAGCGT 59.263 45.455 7.70 0.00 45.66 5.07
3009 4844 3.375911 GCTAGCTCAAACAAACTAGCG 57.624 47.619 7.70 0.00 45.66 4.26
3011 4846 8.812329 CATTACTAGCTAGCTCAAACAAACTAG 58.188 37.037 23.26 11.35 36.11 2.57
3012 4847 7.764443 CCATTACTAGCTAGCTCAAACAAACTA 59.236 37.037 23.26 0.00 0.00 2.24
3013 4848 6.595716 CCATTACTAGCTAGCTCAAACAAACT 59.404 38.462 23.26 0.00 0.00 2.66
3014 4849 6.675728 GCCATTACTAGCTAGCTCAAACAAAC 60.676 42.308 23.26 3.12 0.00 2.93
3015 4850 5.354234 GCCATTACTAGCTAGCTCAAACAAA 59.646 40.000 23.26 8.75 0.00 2.83
3016 4851 4.876107 GCCATTACTAGCTAGCTCAAACAA 59.124 41.667 23.26 9.84 0.00 2.83
3017 4852 4.442706 GCCATTACTAGCTAGCTCAAACA 58.557 43.478 23.26 1.52 0.00 2.83
3018 4853 3.491267 CGCCATTACTAGCTAGCTCAAAC 59.509 47.826 23.26 6.04 0.00 2.93
3019 4854 3.492656 CCGCCATTACTAGCTAGCTCAAA 60.493 47.826 23.26 14.21 0.00 2.69
3020 4855 2.035961 CCGCCATTACTAGCTAGCTCAA 59.964 50.000 23.26 14.24 0.00 3.02
3021 4856 1.613925 CCGCCATTACTAGCTAGCTCA 59.386 52.381 23.26 4.88 0.00 4.26
3022 4857 1.067495 CCCGCCATTACTAGCTAGCTC 60.067 57.143 23.26 2.81 0.00 4.09
3023 4858 0.969894 CCCGCCATTACTAGCTAGCT 59.030 55.000 23.12 23.12 0.00 3.32
3024 4859 0.680061 ACCCGCCATTACTAGCTAGC 59.320 55.000 20.91 6.62 0.00 3.42
3025 4860 2.230750 GGTACCCGCCATTACTAGCTAG 59.769 54.545 19.44 19.44 0.00 3.42
3026 4861 2.242043 GGTACCCGCCATTACTAGCTA 58.758 52.381 0.00 0.00 0.00 3.32
3027 4862 1.046204 GGTACCCGCCATTACTAGCT 58.954 55.000 0.00 0.00 0.00 3.32
3028 4863 0.754472 TGGTACCCGCCATTACTAGC 59.246 55.000 10.07 0.00 32.81 3.42
3029 4864 2.037144 ACTGGTACCCGCCATTACTAG 58.963 52.381 10.07 0.00 37.96 2.57
3030 4865 1.758280 CACTGGTACCCGCCATTACTA 59.242 52.381 10.07 0.00 37.96 1.82
3031 4866 0.539986 CACTGGTACCCGCCATTACT 59.460 55.000 10.07 0.00 37.96 2.24
3032 4867 0.251073 ACACTGGTACCCGCCATTAC 59.749 55.000 10.07 0.00 37.96 1.89
3033 4868 1.758280 CTACACTGGTACCCGCCATTA 59.242 52.381 10.07 0.00 37.96 1.90
3034 4869 0.539986 CTACACTGGTACCCGCCATT 59.460 55.000 10.07 0.00 37.96 3.16
3035 4870 0.616679 ACTACACTGGTACCCGCCAT 60.617 55.000 10.07 0.00 37.96 4.40
3036 4871 1.228956 ACTACACTGGTACCCGCCA 60.229 57.895 10.07 0.00 36.97 5.69
3037 4872 1.514553 GACTACACTGGTACCCGCC 59.485 63.158 10.07 0.00 0.00 6.13
3038 4873 1.138247 CGACTACACTGGTACCCGC 59.862 63.158 10.07 0.00 0.00 6.13
3039 4874 1.138247 GCGACTACACTGGTACCCG 59.862 63.158 10.07 5.44 0.00 5.28
3040 4875 0.893447 AAGCGACTACACTGGTACCC 59.107 55.000 10.07 0.00 0.00 3.69
3041 4876 1.271656 ACAAGCGACTACACTGGTACC 59.728 52.381 4.43 4.43 0.00 3.34
3042 4877 2.719426 ACAAGCGACTACACTGGTAC 57.281 50.000 0.00 0.00 0.00 3.34
3043 4878 2.864882 GCAACAAGCGACTACACTGGTA 60.865 50.000 0.00 0.00 0.00 3.25
3044 4879 1.865865 CAACAAGCGACTACACTGGT 58.134 50.000 0.00 0.00 0.00 4.00
3045 4880 0.512952 GCAACAAGCGACTACACTGG 59.487 55.000 0.00 0.00 0.00 4.00
3056 4891 2.294233 TGATGAACAAGGAGCAACAAGC 59.706 45.455 0.00 0.00 46.19 4.01
3057 4892 4.482386 CATGATGAACAAGGAGCAACAAG 58.518 43.478 0.00 0.00 0.00 3.16
3058 4893 3.256383 CCATGATGAACAAGGAGCAACAA 59.744 43.478 0.00 0.00 39.44 2.83
3059 4894 2.821378 CCATGATGAACAAGGAGCAACA 59.179 45.455 0.00 0.00 39.44 3.33
3060 4895 2.416431 GCCATGATGAACAAGGAGCAAC 60.416 50.000 0.00 0.00 39.44 4.17
3061 4896 1.820519 GCCATGATGAACAAGGAGCAA 59.179 47.619 0.00 0.00 39.44 3.91
3062 4897 1.272037 TGCCATGATGAACAAGGAGCA 60.272 47.619 0.00 0.00 39.44 4.26
3063 4898 1.466856 TGCCATGATGAACAAGGAGC 58.533 50.000 0.00 0.00 39.44 4.70
3064 4899 4.081862 ACAAATGCCATGATGAACAAGGAG 60.082 41.667 0.00 0.00 39.44 3.69
3065 4900 3.833650 ACAAATGCCATGATGAACAAGGA 59.166 39.130 0.00 0.00 39.44 3.36
3066 4901 4.196626 ACAAATGCCATGATGAACAAGG 57.803 40.909 0.00 0.00 39.98 3.61
3067 4902 5.290158 GCTAACAAATGCCATGATGAACAAG 59.710 40.000 0.00 0.00 0.00 3.16
3068 4903 5.047164 AGCTAACAAATGCCATGATGAACAA 60.047 36.000 0.00 0.00 0.00 2.83
3069 4904 4.463539 AGCTAACAAATGCCATGATGAACA 59.536 37.500 0.00 0.00 0.00 3.18
3070 4905 5.002464 AGCTAACAAATGCCATGATGAAC 57.998 39.130 0.00 0.00 0.00 3.18
3071 4906 5.887598 AGTAGCTAACAAATGCCATGATGAA 59.112 36.000 0.00 0.00 0.00 2.57
3072 4907 5.297527 CAGTAGCTAACAAATGCCATGATGA 59.702 40.000 0.00 0.00 0.00 2.92
3073 4908 5.516996 CAGTAGCTAACAAATGCCATGATG 58.483 41.667 0.00 0.00 0.00 3.07
3074 4909 4.037208 GCAGTAGCTAACAAATGCCATGAT 59.963 41.667 0.00 0.00 37.91 2.45
3075 4910 3.378112 GCAGTAGCTAACAAATGCCATGA 59.622 43.478 0.00 0.00 37.91 3.07
3076 4911 3.699067 GCAGTAGCTAACAAATGCCATG 58.301 45.455 0.00 0.00 37.91 3.66
3090 4925 0.172352 ACTCGAGCTGAAGCAGTAGC 59.828 55.000 13.61 0.00 45.16 3.58
3091 4926 3.980646 ATACTCGAGCTGAAGCAGTAG 57.019 47.619 13.61 1.14 45.16 2.57
3092 4927 4.157840 TCAAATACTCGAGCTGAAGCAGTA 59.842 41.667 13.61 4.45 45.16 2.74
3093 4928 3.056536 TCAAATACTCGAGCTGAAGCAGT 60.057 43.478 13.61 2.25 45.16 4.40
3094 4929 3.305629 GTCAAATACTCGAGCTGAAGCAG 59.694 47.826 13.61 0.00 45.16 4.24
3095 4930 3.254060 GTCAAATACTCGAGCTGAAGCA 58.746 45.455 13.61 0.00 45.16 3.91
3096 4931 3.254060 TGTCAAATACTCGAGCTGAAGC 58.746 45.455 13.61 0.00 42.49 3.86
3097 4932 5.845985 TTTGTCAAATACTCGAGCTGAAG 57.154 39.130 13.61 0.00 0.00 3.02
3098 4933 6.612247 TTTTTGTCAAATACTCGAGCTGAA 57.388 33.333 13.61 0.00 0.00 3.02
3118 4953 7.072834 ACGGATACCCCTAATATGGTAGTTTTT 59.927 37.037 0.00 0.00 40.30 1.94
3119 4954 6.559921 ACGGATACCCCTAATATGGTAGTTTT 59.440 38.462 0.00 0.00 40.30 2.43
3120 4955 6.086775 ACGGATACCCCTAATATGGTAGTTT 58.913 40.000 0.00 0.00 40.30 2.66
3121 4956 5.658474 ACGGATACCCCTAATATGGTAGTT 58.342 41.667 0.00 0.00 40.30 2.24
3122 4957 5.267587 GACGGATACCCCTAATATGGTAGT 58.732 45.833 0.00 0.00 40.30 2.73
3123 4958 4.648307 GGACGGATACCCCTAATATGGTAG 59.352 50.000 0.00 0.00 40.30 3.18
3124 4959 4.572654 GGGACGGATACCCCTAATATGGTA 60.573 50.000 0.00 0.00 41.38 3.25
3125 4960 3.447950 GGACGGATACCCCTAATATGGT 58.552 50.000 0.00 0.00 38.69 3.55
3126 4961 2.770232 GGGACGGATACCCCTAATATGG 59.230 54.545 0.00 0.00 41.38 2.74
3127 4962 3.197116 GTGGGACGGATACCCCTAATATG 59.803 52.174 0.00 0.00 46.21 1.78
3128 4963 3.181404 TGTGGGACGGATACCCCTAATAT 60.181 47.826 0.00 0.00 46.21 1.28
3129 4964 2.179645 TGTGGGACGGATACCCCTAATA 59.820 50.000 0.00 0.00 46.21 0.98
3130 4965 1.061967 TGTGGGACGGATACCCCTAAT 60.062 52.381 0.00 0.00 46.21 1.73
3131 4966 0.339162 TGTGGGACGGATACCCCTAA 59.661 55.000 0.00 0.00 46.21 2.69
3132 4967 0.105862 CTGTGGGACGGATACCCCTA 60.106 60.000 0.00 0.00 46.21 3.53
3133 4968 1.382695 CTGTGGGACGGATACCCCT 60.383 63.158 0.00 0.00 46.21 4.79
3134 4969 0.979187 TTCTGTGGGACGGATACCCC 60.979 60.000 0.00 0.00 46.21 4.95
3135 4970 0.177373 GTTCTGTGGGACGGATACCC 59.823 60.000 0.00 0.00 46.87 3.69
3136 4971 1.192428 AGTTCTGTGGGACGGATACC 58.808 55.000 0.00 0.00 32.78 2.73
3137 4972 2.100418 GGTAGTTCTGTGGGACGGATAC 59.900 54.545 0.00 0.00 32.78 2.24
3138 4973 2.291735 TGGTAGTTCTGTGGGACGGATA 60.292 50.000 0.00 0.00 32.78 2.59
3139 4974 1.192428 GGTAGTTCTGTGGGACGGAT 58.808 55.000 0.00 0.00 32.78 4.18
3140 4975 0.178955 TGGTAGTTCTGTGGGACGGA 60.179 55.000 0.00 0.00 0.00 4.69
3141 4976 0.037605 GTGGTAGTTCTGTGGGACGG 60.038 60.000 0.00 0.00 0.00 4.79
3142 4977 0.966920 AGTGGTAGTTCTGTGGGACG 59.033 55.000 0.00 0.00 0.00 4.79
3143 4978 3.181458 TGAAAGTGGTAGTTCTGTGGGAC 60.181 47.826 0.00 0.00 0.00 4.46
3144 4979 3.042682 TGAAAGTGGTAGTTCTGTGGGA 58.957 45.455 0.00 0.00 0.00 4.37
3145 4980 3.485463 TGAAAGTGGTAGTTCTGTGGG 57.515 47.619 0.00 0.00 0.00 4.61
3146 4981 5.828299 TTTTGAAAGTGGTAGTTCTGTGG 57.172 39.130 0.00 0.00 0.00 4.17
3181 5016 9.673454 GTCACAAAATTAGAAATTTTCGGTAGT 57.327 29.630 7.25 1.31 34.02 2.73
3182 5017 9.672086 TGTCACAAAATTAGAAATTTTCGGTAG 57.328 29.630 7.25 0.80 34.02 3.18
3184 5019 8.934507 TTGTCACAAAATTAGAAATTTTCGGT 57.065 26.923 7.25 2.46 34.02 4.69
3209 5044 4.929819 AAATGGCGACTTGGTAGTTTTT 57.070 36.364 0.00 0.00 33.84 1.94
3210 5045 4.082949 GCTAAATGGCGACTTGGTAGTTTT 60.083 41.667 0.00 0.00 33.84 2.43
3211 5046 3.439129 GCTAAATGGCGACTTGGTAGTTT 59.561 43.478 0.00 0.00 33.84 2.66
3212 5047 3.007635 GCTAAATGGCGACTTGGTAGTT 58.992 45.455 0.00 0.00 33.84 2.24
3213 5048 2.629051 GCTAAATGGCGACTTGGTAGT 58.371 47.619 0.00 0.00 37.31 2.73
3214 5049 1.940613 GGCTAAATGGCGACTTGGTAG 59.059 52.381 0.00 0.00 0.00 3.18
3215 5050 2.032680 GGCTAAATGGCGACTTGGTA 57.967 50.000 0.00 0.00 0.00 3.25
3216 5051 2.868253 GGCTAAATGGCGACTTGGT 58.132 52.632 0.00 0.00 0.00 3.67
3224 5059 2.521996 CGGTTAAAACGGCTAAATGGC 58.478 47.619 0.00 0.00 37.94 4.40
3233 5068 3.248125 TGTCAGTTAAGCGGTTAAAACGG 59.752 43.478 20.44 12.94 29.74 4.44
3234 5069 4.451557 CTGTCAGTTAAGCGGTTAAAACG 58.548 43.478 20.44 12.10 29.74 3.60
3235 5070 4.319984 CCCTGTCAGTTAAGCGGTTAAAAC 60.320 45.833 20.44 17.68 29.74 2.43
3236 5071 3.816523 CCCTGTCAGTTAAGCGGTTAAAA 59.183 43.478 20.44 7.54 29.74 1.52
3237 5072 3.071312 TCCCTGTCAGTTAAGCGGTTAAA 59.929 43.478 20.44 3.73 29.74 1.52
3238 5073 2.633967 TCCCTGTCAGTTAAGCGGTTAA 59.366 45.455 15.44 15.44 0.00 2.01
3239 5074 2.250031 TCCCTGTCAGTTAAGCGGTTA 58.750 47.619 2.26 2.26 0.00 2.85
3240 5075 1.053424 TCCCTGTCAGTTAAGCGGTT 58.947 50.000 4.76 4.76 0.00 4.44
3241 5076 1.066143 CATCCCTGTCAGTTAAGCGGT 60.066 52.381 0.00 0.00 0.00 5.68
3242 5077 1.656652 CATCCCTGTCAGTTAAGCGG 58.343 55.000 0.00 0.00 0.00 5.52
3243 5078 1.656652 CCATCCCTGTCAGTTAAGCG 58.343 55.000 0.00 0.00 0.00 4.68
3244 5079 1.383523 GCCATCCCTGTCAGTTAAGC 58.616 55.000 0.00 0.00 0.00 3.09
3245 5080 2.044123 GGCCATCCCTGTCAGTTAAG 57.956 55.000 0.00 0.00 0.00 1.85
3286 5121 2.385091 CGTCCGTTAGCCGTTTGGG 61.385 63.158 0.00 0.00 39.58 4.12
3287 5122 3.018840 GCGTCCGTTAGCCGTTTGG 62.019 63.158 0.00 0.00 38.77 3.28
3288 5123 2.472934 GCGTCCGTTAGCCGTTTG 59.527 61.111 0.00 0.00 33.66 2.93
3289 5124 2.739671 GGCGTCCGTTAGCCGTTT 60.740 61.111 0.00 0.00 44.22 3.60
3308 5143 3.188786 CCACTAACGGCAGCGAGC 61.189 66.667 0.00 0.00 44.65 5.03
3318 5153 4.832608 CCGAGCCGGGCCACTAAC 62.833 72.222 17.02 0.00 44.15 2.34
3334 5169 2.359975 CCTTGGCTGGTTCCGACC 60.360 66.667 0.00 0.00 46.71 4.79
3335 5170 2.359975 CCCTTGGCTGGTTCCGAC 60.360 66.667 0.00 0.00 0.00 4.79
3336 5171 4.344865 GCCCTTGGCTGGTTCCGA 62.345 66.667 0.00 0.00 46.69 4.55
3346 5181 1.805428 CGTTTTGACCTGGCCCTTGG 61.805 60.000 0.00 2.06 0.00 3.61
3347 5182 0.821711 TCGTTTTGACCTGGCCCTTG 60.822 55.000 0.00 0.00 0.00 3.61
3348 5183 0.822121 GTCGTTTTGACCTGGCCCTT 60.822 55.000 0.00 0.00 42.04 3.95
3349 5184 1.228154 GTCGTTTTGACCTGGCCCT 60.228 57.895 0.00 0.00 42.04 5.19
3350 5185 3.351450 GTCGTTTTGACCTGGCCC 58.649 61.111 0.00 0.00 42.04 5.80
3358 5193 2.662527 GCCGGTCGGTCGTTTTGA 60.663 61.111 11.25 0.00 37.65 2.69
3359 5194 3.719144 GGCCGGTCGGTCGTTTTG 61.719 66.667 11.25 0.00 37.65 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.