Multiple sequence alignment - TraesCS5A01G459600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G459600 chr5A 100.000 2990 0 0 1 2990 640272743 640275732 0.000000e+00 5522.0
1 TraesCS5A01G459600 chr5A 97.770 269 4 1 2724 2990 28653197 28653465 2.100000e-126 462.0
2 TraesCS5A01G459600 chr5A 99.482 193 1 0 2023 2215 28651024 28651216 4.740000e-93 351.0
3 TraesCS5A01G459600 chr5A 90.179 224 6 1 2507 2730 28651214 28651421 8.160000e-71 278.0
4 TraesCS5A01G459600 chr5D 89.161 1430 102 22 601 1994 511940762 511942174 0.000000e+00 1733.0
5 TraesCS5A01G459600 chr5D 92.647 68 4 1 2923 2990 24617265 24617331 2.450000e-16 97.1
6 TraesCS5A01G459600 chr5D 92.647 68 4 1 2923 2990 537085319 537085385 2.450000e-16 97.1
7 TraesCS5A01G459600 chr2A 95.464 970 24 4 2023 2989 60074950 60075902 0.000000e+00 1530.0
8 TraesCS5A01G459600 chr2A 94.810 289 14 1 310 597 14521192 14520904 1.630000e-122 449.0
9 TraesCS5A01G459600 chr2A 94.483 290 15 1 307 595 513290341 513290630 2.110000e-121 446.0
10 TraesCS5A01G459600 chr2A 90.476 84 8 0 2906 2989 700371008 700371091 8.760000e-21 111.0
11 TraesCS5A01G459600 chr3A 95.263 971 27 6 2023 2990 118574600 118573646 0.000000e+00 1520.0
12 TraesCS5A01G459600 chr3A 92.857 826 15 6 2115 2937 691473986 691473202 0.000000e+00 1158.0
13 TraesCS5A01G459600 chr3A 97.030 101 3 0 2023 2123 691475481 691475381 1.430000e-38 171.0
14 TraesCS5A01G459600 chr3D 88.986 799 38 11 2023 2816 137093990 137093237 0.000000e+00 942.0
15 TraesCS5A01G459600 chr3D 93.023 301 19 2 299 598 285912218 285911919 3.540000e-119 438.0
16 TraesCS5A01G459600 chr3D 89.683 126 12 1 2023 2148 137101564 137101440 3.080000e-35 159.0
17 TraesCS5A01G459600 chr3D 98.214 56 1 0 2846 2901 137093236 137093181 6.820000e-17 99.0
18 TraesCS5A01G459600 chr5B 91.331 646 54 2 1076 1720 642919828 642920472 0.000000e+00 881.0
19 TraesCS5A01G459600 chr5B 86.585 246 20 6 1747 1985 642928020 642928259 2.960000e-65 259.0
20 TraesCS5A01G459600 chr5B 89.431 123 8 2 695 817 642914509 642914626 1.860000e-32 150.0
21 TraesCS5A01G459600 chr5B 80.102 196 23 13 122 312 642914196 642914380 6.730000e-27 132.0
22 TraesCS5A01G459600 chr5B 94.872 78 4 0 995 1072 642914857 642914934 4.050000e-24 122.0
23 TraesCS5A01G459600 chr4D 95.189 291 11 3 314 602 289888562 289888851 9.770000e-125 457.0
24 TraesCS5A01G459600 chr4D 95.470 287 12 1 314 599 320046586 320046300 9.770000e-125 457.0
25 TraesCS5A01G459600 chr4D 93.878 49 3 0 2023 2071 274217488 274217440 1.150000e-09 75.0
26 TraesCS5A01G459600 chr6D 94.576 295 13 3 307 599 158561933 158562226 1.260000e-123 453.0
27 TraesCS5A01G459600 chr4A 95.406 283 12 1 314 595 321328034 321328316 1.630000e-122 449.0
28 TraesCS5A01G459600 chr4B 93.289 298 19 1 314 610 151931900 151931603 3.540000e-119 438.0
29 TraesCS5A01G459600 chr4B 93.846 65 3 1 2926 2990 575856128 575856191 2.450000e-16 97.1
30 TraesCS5A01G459600 chr4B 90.278 72 6 1 2919 2990 573503966 573503896 3.170000e-15 93.5
31 TraesCS5A01G459600 chr2D 92.787 305 16 5 298 598 164992246 164992548 1.270000e-118 436.0
32 TraesCS5A01G459600 chr2D 92.647 68 4 1 2923 2990 433718894 433718960 2.450000e-16 97.1
33 TraesCS5A01G459600 chr2B 74.847 815 185 17 1101 1901 7156960 7156152 4.740000e-93 351.0
34 TraesCS5A01G459600 chr2B 74.450 818 183 25 1101 1901 7082712 7081904 2.220000e-86 329.0
35 TraesCS5A01G459600 chr2B 74.233 815 191 14 1101 1901 7043903 7043094 1.030000e-84 324.0
36 TraesCS5A01G459600 chr2B 74.265 816 188 17 1101 1901 7124395 7123587 1.030000e-84 324.0
37 TraesCS5A01G459600 chr2B 74.233 815 191 14 1101 1901 454789066 454789875 1.030000e-84 324.0
38 TraesCS5A01G459600 chrUn 74.356 815 190 14 1101 1901 268875804 268876613 2.220000e-86 329.0
39 TraesCS5A01G459600 chrUn 74.705 593 139 10 1101 1686 424079148 424079736 1.380000e-63 254.0
40 TraesCS5A01G459600 chrUn 84.127 252 18 11 2641 2874 269772300 269772547 1.080000e-54 224.0
41 TraesCS5A01G459600 chrUn 84.127 252 18 11 2641 2874 269780673 269780920 1.080000e-54 224.0
42 TraesCS5A01G459600 chr1B 82.822 163 18 4 2434 2593 681807622 681807467 1.450000e-28 137.0
43 TraesCS5A01G459600 chr1D 87.719 114 7 3 2754 2860 487910295 487910182 3.130000e-25 126.0
44 TraesCS5A01G459600 chr1D 83.453 139 13 4 2434 2572 488545493 488545621 1.460000e-23 121.0
45 TraesCS5A01G459600 chr1A 83.846 130 13 4 2733 2856 586937445 586937318 1.880000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G459600 chr5A 640272743 640275732 2989 False 5522.000000 5522 100.000000 1 2990 1 chr5A.!!$F1 2989
1 TraesCS5A01G459600 chr5A 28651024 28653465 2441 False 363.666667 462 95.810333 2023 2990 3 chr5A.!!$F2 967
2 TraesCS5A01G459600 chr5D 511940762 511942174 1412 False 1733.000000 1733 89.161000 601 1994 1 chr5D.!!$F2 1393
3 TraesCS5A01G459600 chr2A 60074950 60075902 952 False 1530.000000 1530 95.464000 2023 2989 1 chr2A.!!$F1 966
4 TraesCS5A01G459600 chr3A 118573646 118574600 954 True 1520.000000 1520 95.263000 2023 2990 1 chr3A.!!$R1 967
5 TraesCS5A01G459600 chr3A 691473202 691475481 2279 True 664.500000 1158 94.943500 2023 2937 2 chr3A.!!$R2 914
6 TraesCS5A01G459600 chr3D 137093181 137093990 809 True 520.500000 942 93.600000 2023 2901 2 chr3D.!!$R3 878
7 TraesCS5A01G459600 chr5B 642919828 642920472 644 False 881.000000 881 91.331000 1076 1720 1 chr5B.!!$F1 644
8 TraesCS5A01G459600 chr2B 7156152 7156960 808 True 351.000000 351 74.847000 1101 1901 1 chr2B.!!$R4 800
9 TraesCS5A01G459600 chr2B 7081904 7082712 808 True 329.000000 329 74.450000 1101 1901 1 chr2B.!!$R2 800
10 TraesCS5A01G459600 chr2B 7043094 7043903 809 True 324.000000 324 74.233000 1101 1901 1 chr2B.!!$R1 800
11 TraesCS5A01G459600 chr2B 7123587 7124395 808 True 324.000000 324 74.265000 1101 1901 1 chr2B.!!$R3 800
12 TraesCS5A01G459600 chr2B 454789066 454789875 809 False 324.000000 324 74.233000 1101 1901 1 chr2B.!!$F1 800
13 TraesCS5A01G459600 chrUn 268875804 268876613 809 False 329.000000 329 74.356000 1101 1901 1 chrUn.!!$F1 800
14 TraesCS5A01G459600 chrUn 424079148 424079736 588 False 254.000000 254 74.705000 1101 1686 1 chrUn.!!$F4 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.038599 AAGATGACATGCACAGGCCA 59.961 50.0 5.01 0.0 40.13 5.36 F
1674 1729 0.038526 TCTTCCCGTCGTCAAAGCTC 60.039 55.0 0.00 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1799 0.802222 CTGCGGTCGTCGATGATGTT 60.802 55.0 11.16 0.0 42.43 2.71 R
2605 4091 0.541530 AGTCTCAGCACAGAGAGCCA 60.542 55.0 4.08 0.0 44.76 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.234019 TGTCCACCTGTTGTGCAC 57.766 55.556 10.75 10.75 44.01 4.57
18 19 1.301293 TGTCCACCTGTTGTGCACA 59.699 52.632 17.42 17.42 43.36 4.57
19 20 0.322906 TGTCCACCTGTTGTGCACAA 60.323 50.000 27.96 27.96 42.63 3.33
20 21 2.554003 TGTCCACCTGTTGTGCACAAC 61.554 52.381 42.20 42.20 42.63 3.32
32 33 5.654317 TTGTGCACAACTTTTATTGCATG 57.346 34.783 27.96 0.00 46.14 4.06
33 34 4.691175 TGTGCACAACTTTTATTGCATGT 58.309 34.783 19.28 0.00 46.14 3.21
34 35 4.744137 TGTGCACAACTTTTATTGCATGTC 59.256 37.500 19.28 0.00 46.14 3.06
35 36 4.150451 GTGCACAACTTTTATTGCATGTCC 59.850 41.667 13.17 0.00 46.14 4.02
36 37 4.202192 TGCACAACTTTTATTGCATGTCCA 60.202 37.500 0.00 0.00 40.01 4.02
37 38 4.931002 GCACAACTTTTATTGCATGTCCAT 59.069 37.500 0.00 0.00 34.97 3.41
38 39 5.409214 GCACAACTTTTATTGCATGTCCATT 59.591 36.000 0.00 0.00 34.97 3.16
39 40 6.401367 GCACAACTTTTATTGCATGTCCATTC 60.401 38.462 0.00 0.00 34.97 2.67
40 41 6.645827 CACAACTTTTATTGCATGTCCATTCA 59.354 34.615 0.00 0.00 32.47 2.57
41 42 6.646240 ACAACTTTTATTGCATGTCCATTCAC 59.354 34.615 0.00 0.00 32.47 3.18
42 43 6.343716 ACTTTTATTGCATGTCCATTCACA 57.656 33.333 0.00 0.00 0.00 3.58
43 44 6.938507 ACTTTTATTGCATGTCCATTCACAT 58.061 32.000 0.00 0.00 37.49 3.21
48 49 2.182904 CATGTCCATTCACATGTGCG 57.817 50.000 21.38 11.34 45.93 5.34
49 50 1.469703 CATGTCCATTCACATGTGCGT 59.530 47.619 21.38 8.89 45.93 5.24
50 51 1.603456 TGTCCATTCACATGTGCGTT 58.397 45.000 21.38 5.12 0.00 4.84
51 52 1.266446 TGTCCATTCACATGTGCGTTG 59.734 47.619 21.38 16.19 0.00 4.10
52 53 1.266718 GTCCATTCACATGTGCGTTGT 59.733 47.619 21.38 1.99 0.00 3.32
53 54 2.482336 GTCCATTCACATGTGCGTTGTA 59.518 45.455 21.38 0.00 0.00 2.41
54 55 3.126858 GTCCATTCACATGTGCGTTGTAT 59.873 43.478 21.38 4.59 0.00 2.29
55 56 4.331443 GTCCATTCACATGTGCGTTGTATA 59.669 41.667 21.38 0.00 0.00 1.47
56 57 5.007626 GTCCATTCACATGTGCGTTGTATAT 59.992 40.000 21.38 1.67 0.00 0.86
57 58 5.588246 TCCATTCACATGTGCGTTGTATATT 59.412 36.000 21.38 0.00 0.00 1.28
58 59 5.909054 CCATTCACATGTGCGTTGTATATTC 59.091 40.000 21.38 0.00 0.00 1.75
59 60 6.458070 CCATTCACATGTGCGTTGTATATTCA 60.458 38.462 21.38 0.00 0.00 2.57
60 61 6.676237 TTCACATGTGCGTTGTATATTCAT 57.324 33.333 21.38 0.00 0.00 2.57
61 62 6.285790 TCACATGTGCGTTGTATATTCATC 57.714 37.500 21.38 0.00 0.00 2.92
62 63 5.051106 TCACATGTGCGTTGTATATTCATCG 60.051 40.000 21.38 8.06 34.81 3.84
63 64 5.047188 ACATGTGCGTTGTATATTCATCGA 58.953 37.500 14.64 0.00 33.94 3.59
64 65 5.051039 ACATGTGCGTTGTATATTCATCGAC 60.051 40.000 14.64 10.61 33.94 4.20
65 66 3.799963 TGTGCGTTGTATATTCATCGACC 59.200 43.478 14.64 6.24 33.94 4.79
66 67 3.799963 GTGCGTTGTATATTCATCGACCA 59.200 43.478 14.64 3.90 33.94 4.02
67 68 4.447724 GTGCGTTGTATATTCATCGACCAT 59.552 41.667 14.64 0.00 33.94 3.55
68 69 4.447389 TGCGTTGTATATTCATCGACCATG 59.553 41.667 14.64 0.00 33.94 3.66
69 70 4.666655 GCGTTGTATATTCATCGACCATGC 60.667 45.833 14.64 0.00 33.94 4.06
70 71 4.447389 CGTTGTATATTCATCGACCATGCA 59.553 41.667 6.91 0.00 33.94 3.96
71 72 5.612492 CGTTGTATATTCATCGACCATGCAC 60.612 44.000 6.91 0.00 33.94 4.57
72 73 4.954875 TGTATATTCATCGACCATGCACA 58.045 39.130 0.00 0.00 31.70 4.57
73 74 5.363939 TGTATATTCATCGACCATGCACAA 58.636 37.500 0.00 0.00 31.70 3.33
74 75 4.818534 ATATTCATCGACCATGCACAAC 57.181 40.909 0.00 0.00 31.70 3.32
75 76 2.183478 TTCATCGACCATGCACAACT 57.817 45.000 0.00 0.00 31.70 3.16
76 77 3.326836 TTCATCGACCATGCACAACTA 57.673 42.857 0.00 0.00 31.70 2.24
77 78 2.616960 TCATCGACCATGCACAACTAC 58.383 47.619 0.00 0.00 31.70 2.73
78 79 2.028567 TCATCGACCATGCACAACTACA 60.029 45.455 0.00 0.00 31.70 2.74
79 80 2.760634 TCGACCATGCACAACTACAT 57.239 45.000 0.00 0.00 0.00 2.29
80 81 3.052455 TCGACCATGCACAACTACATT 57.948 42.857 0.00 0.00 0.00 2.71
81 82 3.407698 TCGACCATGCACAACTACATTT 58.592 40.909 0.00 0.00 0.00 2.32
82 83 4.570930 TCGACCATGCACAACTACATTTA 58.429 39.130 0.00 0.00 0.00 1.40
83 84 4.390603 TCGACCATGCACAACTACATTTAC 59.609 41.667 0.00 0.00 0.00 2.01
84 85 4.153296 CGACCATGCACAACTACATTTACA 59.847 41.667 0.00 0.00 0.00 2.41
85 86 5.163764 CGACCATGCACAACTACATTTACAT 60.164 40.000 0.00 0.00 0.00 2.29
86 87 6.036626 CGACCATGCACAACTACATTTACATA 59.963 38.462 0.00 0.00 0.00 2.29
87 88 7.083875 ACCATGCACAACTACATTTACATAC 57.916 36.000 0.00 0.00 0.00 2.39
88 89 6.884295 ACCATGCACAACTACATTTACATACT 59.116 34.615 0.00 0.00 0.00 2.12
89 90 7.393234 ACCATGCACAACTACATTTACATACTT 59.607 33.333 0.00 0.00 0.00 2.24
90 91 8.243426 CCATGCACAACTACATTTACATACTTT 58.757 33.333 0.00 0.00 0.00 2.66
91 92 9.277565 CATGCACAACTACATTTACATACTTTC 57.722 33.333 0.00 0.00 0.00 2.62
92 93 8.615878 TGCACAACTACATTTACATACTTTCT 57.384 30.769 0.00 0.00 0.00 2.52
93 94 9.713713 TGCACAACTACATTTACATACTTTCTA 57.286 29.630 0.00 0.00 0.00 2.10
108 109 9.482627 ACATACTTTCTAGAGAAACAAGAACAG 57.517 33.333 7.89 0.00 38.94 3.16
109 110 9.482627 CATACTTTCTAGAGAAACAAGAACAGT 57.517 33.333 7.89 0.00 38.94 3.55
112 113 9.886132 ACTTTCTAGAGAAACAAGAACAGTAAA 57.114 29.630 7.89 0.00 38.94 2.01
140 141 8.525290 AAAAAGAGGAAACAAAGAGAATGAGA 57.475 30.769 0.00 0.00 0.00 3.27
141 142 7.742556 AAAGAGGAAACAAAGAGAATGAGAG 57.257 36.000 0.00 0.00 0.00 3.20
142 143 6.432403 AGAGGAAACAAAGAGAATGAGAGT 57.568 37.500 0.00 0.00 0.00 3.24
143 144 6.229733 AGAGGAAACAAAGAGAATGAGAGTG 58.770 40.000 0.00 0.00 0.00 3.51
144 145 5.312079 AGGAAACAAAGAGAATGAGAGTGG 58.688 41.667 0.00 0.00 0.00 4.00
145 146 5.072329 AGGAAACAAAGAGAATGAGAGTGGA 59.928 40.000 0.00 0.00 0.00 4.02
146 147 5.765182 GGAAACAAAGAGAATGAGAGTGGAA 59.235 40.000 0.00 0.00 0.00 3.53
147 148 6.263168 GGAAACAAAGAGAATGAGAGTGGAAA 59.737 38.462 0.00 0.00 0.00 3.13
148 149 7.201821 GGAAACAAAGAGAATGAGAGTGGAAAA 60.202 37.037 0.00 0.00 0.00 2.29
149 150 7.830099 AACAAAGAGAATGAGAGTGGAAAAT 57.170 32.000 0.00 0.00 0.00 1.82
150 151 8.924511 AACAAAGAGAATGAGAGTGGAAAATA 57.075 30.769 0.00 0.00 0.00 1.40
151 152 8.558973 ACAAAGAGAATGAGAGTGGAAAATAG 57.441 34.615 0.00 0.00 0.00 1.73
152 153 8.378565 ACAAAGAGAATGAGAGTGGAAAATAGA 58.621 33.333 0.00 0.00 0.00 1.98
153 154 9.224267 CAAAGAGAATGAGAGTGGAAAATAGAA 57.776 33.333 0.00 0.00 0.00 2.10
154 155 9.447157 AAAGAGAATGAGAGTGGAAAATAGAAG 57.553 33.333 0.00 0.00 0.00 2.85
155 156 8.144862 AGAGAATGAGAGTGGAAAATAGAAGT 57.855 34.615 0.00 0.00 0.00 3.01
156 157 8.040132 AGAGAATGAGAGTGGAAAATAGAAGTG 58.960 37.037 0.00 0.00 0.00 3.16
157 158 7.911651 AGAATGAGAGTGGAAAATAGAAGTGA 58.088 34.615 0.00 0.00 0.00 3.41
158 159 8.378565 AGAATGAGAGTGGAAAATAGAAGTGAA 58.621 33.333 0.00 0.00 0.00 3.18
159 160 8.924511 AATGAGAGTGGAAAATAGAAGTGAAA 57.075 30.769 0.00 0.00 0.00 2.69
160 161 8.924511 ATGAGAGTGGAAAATAGAAGTGAAAA 57.075 30.769 0.00 0.00 0.00 2.29
161 162 8.924511 TGAGAGTGGAAAATAGAAGTGAAAAT 57.075 30.769 0.00 0.00 0.00 1.82
166 167 9.807921 AGTGGAAAATAGAAGTGAAAATAAGGA 57.192 29.630 0.00 0.00 0.00 3.36
173 174 9.467796 AATAGAAGTGAAAATAAGGAAGGAAGG 57.532 33.333 0.00 0.00 0.00 3.46
174 175 5.712446 AGAAGTGAAAATAAGGAAGGAAGGC 59.288 40.000 0.00 0.00 0.00 4.35
175 176 4.998051 AGTGAAAATAAGGAAGGAAGGCA 58.002 39.130 0.00 0.00 0.00 4.75
176 177 5.393866 AGTGAAAATAAGGAAGGAAGGCAA 58.606 37.500 0.00 0.00 0.00 4.52
177 178 5.838521 AGTGAAAATAAGGAAGGAAGGCAAA 59.161 36.000 0.00 0.00 0.00 3.68
178 179 6.326323 AGTGAAAATAAGGAAGGAAGGCAAAA 59.674 34.615 0.00 0.00 0.00 2.44
179 180 6.423905 GTGAAAATAAGGAAGGAAGGCAAAAC 59.576 38.462 0.00 0.00 0.00 2.43
180 181 6.098982 TGAAAATAAGGAAGGAAGGCAAAACA 59.901 34.615 0.00 0.00 0.00 2.83
181 182 6.493189 AAATAAGGAAGGAAGGCAAAACAA 57.507 33.333 0.00 0.00 0.00 2.83
182 183 6.686484 AATAAGGAAGGAAGGCAAAACAAT 57.314 33.333 0.00 0.00 0.00 2.71
183 184 4.341366 AAGGAAGGAAGGCAAAACAATG 57.659 40.909 0.00 0.00 0.00 2.82
184 185 2.634453 AGGAAGGAAGGCAAAACAATGG 59.366 45.455 0.00 0.00 0.00 3.16
185 186 2.632512 GGAAGGAAGGCAAAACAATGGA 59.367 45.455 0.00 0.00 0.00 3.41
186 187 3.070878 GGAAGGAAGGCAAAACAATGGAA 59.929 43.478 0.00 0.00 0.00 3.53
187 188 4.263025 GGAAGGAAGGCAAAACAATGGAAT 60.263 41.667 0.00 0.00 0.00 3.01
188 189 4.980339 AGGAAGGCAAAACAATGGAATT 57.020 36.364 0.00 0.00 36.63 2.17
189 190 5.308976 AGGAAGGCAAAACAATGGAATTT 57.691 34.783 0.00 0.00 31.22 1.82
190 191 5.693961 AGGAAGGCAAAACAATGGAATTTT 58.306 33.333 0.00 0.00 31.22 1.82
191 192 6.128486 AGGAAGGCAAAACAATGGAATTTTT 58.872 32.000 0.00 0.00 31.22 1.94
192 193 6.039605 AGGAAGGCAAAACAATGGAATTTTTG 59.960 34.615 3.38 3.38 37.19 2.44
193 194 6.183360 GGAAGGCAAAACAATGGAATTTTTGT 60.183 34.615 8.06 0.00 36.74 2.83
194 195 7.012799 GGAAGGCAAAACAATGGAATTTTTGTA 59.987 33.333 8.06 0.00 36.74 2.41
195 196 8.462589 AAGGCAAAACAATGGAATTTTTGTAT 57.537 26.923 8.06 0.00 36.74 2.29
196 197 7.873910 AGGCAAAACAATGGAATTTTTGTATG 58.126 30.769 8.06 6.86 36.74 2.39
197 198 7.501892 AGGCAAAACAATGGAATTTTTGTATGT 59.498 29.630 8.06 0.00 36.74 2.29
198 199 8.134261 GGCAAAACAATGGAATTTTTGTATGTT 58.866 29.630 8.06 0.00 36.74 2.71
199 200 8.956014 GCAAAACAATGGAATTTTTGTATGTTG 58.044 29.630 8.06 8.43 36.74 3.33
203 204 8.031848 ACAATGGAATTTTTGTATGTTGATGC 57.968 30.769 1.80 0.00 31.22 3.91
204 205 7.660617 ACAATGGAATTTTTGTATGTTGATGCA 59.339 29.630 0.00 0.00 31.22 3.96
205 206 8.504815 CAATGGAATTTTTGTATGTTGATGCAA 58.495 29.630 0.00 0.00 31.22 4.08
206 207 7.655236 TGGAATTTTTGTATGTTGATGCAAG 57.345 32.000 0.00 0.00 35.82 4.01
207 208 6.147492 TGGAATTTTTGTATGTTGATGCAAGC 59.853 34.615 0.00 0.00 35.82 4.01
208 209 6.369615 GGAATTTTTGTATGTTGATGCAAGCT 59.630 34.615 0.00 0.00 35.82 3.74
209 210 6.715344 ATTTTTGTATGTTGATGCAAGCTG 57.285 33.333 0.00 0.00 35.82 4.24
210 211 3.853831 TTGTATGTTGATGCAAGCTGG 57.146 42.857 0.00 0.00 31.33 4.85
211 212 3.070476 TGTATGTTGATGCAAGCTGGA 57.930 42.857 0.00 0.00 0.00 3.86
212 213 3.623703 TGTATGTTGATGCAAGCTGGAT 58.376 40.909 0.00 0.00 0.00 3.41
213 214 3.379057 TGTATGTTGATGCAAGCTGGATG 59.621 43.478 0.00 0.00 0.00 3.51
214 215 2.203470 TGTTGATGCAAGCTGGATGA 57.797 45.000 0.00 0.00 0.00 2.92
215 216 2.516906 TGTTGATGCAAGCTGGATGAA 58.483 42.857 0.00 0.00 0.00 2.57
216 217 2.892215 TGTTGATGCAAGCTGGATGAAA 59.108 40.909 0.00 0.00 0.00 2.69
217 218 3.512329 TGTTGATGCAAGCTGGATGAAAT 59.488 39.130 0.00 0.00 0.00 2.17
218 219 3.793797 TGATGCAAGCTGGATGAAATG 57.206 42.857 0.00 0.00 0.00 2.32
219 220 3.093814 TGATGCAAGCTGGATGAAATGT 58.906 40.909 0.00 0.00 0.00 2.71
220 221 4.271661 TGATGCAAGCTGGATGAAATGTA 58.728 39.130 0.00 0.00 0.00 2.29
221 222 4.337274 TGATGCAAGCTGGATGAAATGTAG 59.663 41.667 0.00 0.00 0.00 2.74
222 223 3.689347 TGCAAGCTGGATGAAATGTAGT 58.311 40.909 0.00 0.00 0.00 2.73
223 224 4.081406 TGCAAGCTGGATGAAATGTAGTT 58.919 39.130 0.00 0.00 0.00 2.24
224 225 5.252547 TGCAAGCTGGATGAAATGTAGTTA 58.747 37.500 0.00 0.00 0.00 2.24
225 226 5.887598 TGCAAGCTGGATGAAATGTAGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
226 227 6.377996 TGCAAGCTGGATGAAATGTAGTTATT 59.622 34.615 0.00 0.00 0.00 1.40
227 228 7.555914 TGCAAGCTGGATGAAATGTAGTTATTA 59.444 33.333 0.00 0.00 0.00 0.98
228 229 8.405531 GCAAGCTGGATGAAATGTAGTTATTAA 58.594 33.333 0.00 0.00 0.00 1.40
254 255 9.926158 ATTAATACAACAAAAAGATGACATGCA 57.074 25.926 0.00 0.00 0.00 3.96
255 256 7.642071 AATACAACAAAAAGATGACATGCAC 57.358 32.000 0.00 0.00 0.00 4.57
256 257 5.008619 ACAACAAAAAGATGACATGCACA 57.991 34.783 0.00 0.00 0.00 4.57
257 258 5.045215 ACAACAAAAAGATGACATGCACAG 58.955 37.500 0.00 0.00 0.00 3.66
258 259 4.247267 ACAAAAAGATGACATGCACAGG 57.753 40.909 0.00 0.00 0.00 4.00
259 260 2.991190 CAAAAAGATGACATGCACAGGC 59.009 45.455 0.00 0.00 41.68 4.85
260 261 1.180029 AAAGATGACATGCACAGGCC 58.820 50.000 0.00 0.00 40.13 5.19
261 262 0.038599 AAGATGACATGCACAGGCCA 59.961 50.000 5.01 0.00 40.13 5.36
262 263 0.679002 AGATGACATGCACAGGCCAC 60.679 55.000 5.01 0.00 40.13 5.01
263 264 0.679002 GATGACATGCACAGGCCACT 60.679 55.000 5.01 0.00 40.13 4.00
264 265 0.251474 ATGACATGCACAGGCCACTT 60.251 50.000 5.01 0.00 40.13 3.16
265 266 0.467844 TGACATGCACAGGCCACTTT 60.468 50.000 5.01 0.00 40.13 2.66
266 267 0.038892 GACATGCACAGGCCACTTTG 60.039 55.000 5.01 0.00 40.13 2.77
269 270 4.079446 GCACAGGCCACTTTGCTA 57.921 55.556 5.01 0.00 44.86 3.49
270 271 1.878775 GCACAGGCCACTTTGCTAG 59.121 57.895 5.01 0.00 44.86 3.42
271 272 0.890996 GCACAGGCCACTTTGCTAGT 60.891 55.000 5.01 0.00 44.86 2.57
272 273 1.609208 CACAGGCCACTTTGCTAGTT 58.391 50.000 5.01 0.00 33.85 2.24
273 274 1.267806 CACAGGCCACTTTGCTAGTTG 59.732 52.381 5.01 0.00 33.85 3.16
274 275 1.142870 ACAGGCCACTTTGCTAGTTGA 59.857 47.619 5.01 0.00 33.85 3.18
275 276 2.229792 CAGGCCACTTTGCTAGTTGAA 58.770 47.619 5.01 0.00 33.85 2.69
276 277 2.821969 CAGGCCACTTTGCTAGTTGAAT 59.178 45.455 5.01 0.00 33.85 2.57
277 278 4.009675 CAGGCCACTTTGCTAGTTGAATA 58.990 43.478 5.01 0.00 33.85 1.75
278 279 4.458989 CAGGCCACTTTGCTAGTTGAATAA 59.541 41.667 5.01 0.00 33.85 1.40
279 280 5.048083 CAGGCCACTTTGCTAGTTGAATAAA 60.048 40.000 5.01 0.00 33.85 1.40
280 281 5.716703 AGGCCACTTTGCTAGTTGAATAAAT 59.283 36.000 5.01 0.00 33.85 1.40
281 282 6.036470 GGCCACTTTGCTAGTTGAATAAATC 58.964 40.000 0.00 0.00 33.85 2.17
282 283 6.127619 GGCCACTTTGCTAGTTGAATAAATCT 60.128 38.462 0.00 0.00 33.85 2.40
283 284 7.067008 GGCCACTTTGCTAGTTGAATAAATCTA 59.933 37.037 0.00 0.00 33.85 1.98
284 285 7.910683 GCCACTTTGCTAGTTGAATAAATCTAC 59.089 37.037 0.00 0.00 33.85 2.59
285 286 9.167311 CCACTTTGCTAGTTGAATAAATCTACT 57.833 33.333 0.00 0.00 44.62 2.57
296 297 9.569167 GTTGAATAAATCTACTTAAACAAGCCC 57.431 33.333 0.00 0.00 31.98 5.19
297 298 8.288689 TGAATAAATCTACTTAAACAAGCCCC 57.711 34.615 0.00 0.00 0.00 5.80
298 299 8.113462 TGAATAAATCTACTTAAACAAGCCCCT 58.887 33.333 0.00 0.00 0.00 4.79
299 300 8.895141 AATAAATCTACTTAAACAAGCCCCTT 57.105 30.769 0.00 0.00 0.00 3.95
300 301 6.835819 AAATCTACTTAAACAAGCCCCTTC 57.164 37.500 0.00 0.00 0.00 3.46
301 302 4.296621 TCTACTTAAACAAGCCCCTTCC 57.703 45.455 0.00 0.00 0.00 3.46
302 303 3.653836 TCTACTTAAACAAGCCCCTTCCA 59.346 43.478 0.00 0.00 0.00 3.53
303 304 3.542969 ACTTAAACAAGCCCCTTCCAT 57.457 42.857 0.00 0.00 0.00 3.41
304 305 3.856900 ACTTAAACAAGCCCCTTCCATT 58.143 40.909 0.00 0.00 0.00 3.16
305 306 4.231273 ACTTAAACAAGCCCCTTCCATTT 58.769 39.130 0.00 0.00 0.00 2.32
306 307 4.040339 ACTTAAACAAGCCCCTTCCATTTG 59.960 41.667 0.00 0.00 0.00 2.32
307 308 0.686789 AACAAGCCCCTTCCATTTGC 59.313 50.000 0.00 0.00 0.00 3.68
308 309 0.178924 ACAAGCCCCTTCCATTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
309 310 0.978907 CAAGCCCCTTCCATTTGCTT 59.021 50.000 0.00 0.00 42.62 3.91
310 311 2.178580 CAAGCCCCTTCCATTTGCTTA 58.821 47.619 0.00 0.00 40.08 3.09
311 312 2.566724 CAAGCCCCTTCCATTTGCTTAA 59.433 45.455 0.00 0.00 40.08 1.85
312 313 2.901291 AGCCCCTTCCATTTGCTTAAA 58.099 42.857 0.00 0.00 0.00 1.52
313 314 3.247162 AGCCCCTTCCATTTGCTTAAAA 58.753 40.909 0.00 0.00 0.00 1.52
314 315 3.007940 AGCCCCTTCCATTTGCTTAAAAC 59.992 43.478 0.00 0.00 0.00 2.43
315 316 3.007940 GCCCCTTCCATTTGCTTAAAACT 59.992 43.478 0.00 0.00 0.00 2.66
316 317 4.221924 GCCCCTTCCATTTGCTTAAAACTA 59.778 41.667 0.00 0.00 0.00 2.24
317 318 5.720202 CCCCTTCCATTTGCTTAAAACTAC 58.280 41.667 0.00 0.00 0.00 2.73
318 319 5.337250 CCCCTTCCATTTGCTTAAAACTACC 60.337 44.000 0.00 0.00 0.00 3.18
319 320 5.337250 CCCTTCCATTTGCTTAAAACTACCC 60.337 44.000 0.00 0.00 0.00 3.69
320 321 5.245075 CCTTCCATTTGCTTAAAACTACCCA 59.755 40.000 0.00 0.00 0.00 4.51
321 322 5.715434 TCCATTTGCTTAAAACTACCCAC 57.285 39.130 0.00 0.00 0.00 4.61
322 323 5.141182 TCCATTTGCTTAAAACTACCCACA 58.859 37.500 0.00 0.00 0.00 4.17
323 324 5.242838 TCCATTTGCTTAAAACTACCCACAG 59.757 40.000 0.00 0.00 0.00 3.66
324 325 5.010617 CCATTTGCTTAAAACTACCCACAGT 59.989 40.000 0.00 0.00 0.00 3.55
325 326 5.508200 TTTGCTTAAAACTACCCACAGTG 57.492 39.130 0.00 0.00 0.00 3.66
326 327 3.482436 TGCTTAAAACTACCCACAGTGG 58.518 45.455 13.35 13.35 37.25 4.00
338 339 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
339 340 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
340 341 4.028131 CCACAGTGGGAGTAACATAGGTA 58.972 47.826 12.40 0.00 32.67 3.08
341 342 4.468510 CCACAGTGGGAGTAACATAGGTAA 59.531 45.833 12.40 0.00 32.67 2.85
342 343 5.130477 CCACAGTGGGAGTAACATAGGTAAT 59.870 44.000 12.40 0.00 32.67 1.89
343 344 6.325545 CCACAGTGGGAGTAACATAGGTAATA 59.674 42.308 12.40 0.00 32.67 0.98
344 345 7.147620 CCACAGTGGGAGTAACATAGGTAATAA 60.148 40.741 12.40 0.00 32.67 1.40
345 346 7.709613 CACAGTGGGAGTAACATAGGTAATAAC 59.290 40.741 0.00 0.00 0.00 1.89
346 347 7.400915 ACAGTGGGAGTAACATAGGTAATAACA 59.599 37.037 0.00 0.00 0.00 2.41
347 348 8.429641 CAGTGGGAGTAACATAGGTAATAACAT 58.570 37.037 0.00 0.00 0.00 2.71
348 349 8.648693 AGTGGGAGTAACATAGGTAATAACATC 58.351 37.037 0.00 0.00 0.00 3.06
349 350 8.426489 GTGGGAGTAACATAGGTAATAACATCA 58.574 37.037 0.00 0.00 0.00 3.07
350 351 8.426489 TGGGAGTAACATAGGTAATAACATCAC 58.574 37.037 0.00 0.00 0.00 3.06
351 352 8.426489 GGGAGTAACATAGGTAATAACATCACA 58.574 37.037 0.00 0.00 0.00 3.58
352 353 9.257651 GGAGTAACATAGGTAATAACATCACAC 57.742 37.037 0.00 0.00 0.00 3.82
353 354 9.811995 GAGTAACATAGGTAATAACATCACACA 57.188 33.333 0.00 0.00 0.00 3.72
382 383 9.716531 TCTAGATAAAATAGATGATGTGGCAAG 57.283 33.333 0.00 0.00 0.00 4.01
383 384 9.499479 CTAGATAAAATAGATGATGTGGCAAGT 57.501 33.333 0.00 0.00 0.00 3.16
385 386 9.851686 AGATAAAATAGATGATGTGGCAAGTAA 57.148 29.630 0.00 0.00 0.00 2.24
392 393 9.797642 ATAGATGATGTGGCAAGTAATAAATGA 57.202 29.630 0.00 0.00 0.00 2.57
393 394 8.523915 AGATGATGTGGCAAGTAATAAATGAA 57.476 30.769 0.00 0.00 0.00 2.57
394 395 8.970020 AGATGATGTGGCAAGTAATAAATGAAA 58.030 29.630 0.00 0.00 0.00 2.69
395 396 9.585099 GATGATGTGGCAAGTAATAAATGAAAA 57.415 29.630 0.00 0.00 0.00 2.29
396 397 9.941325 ATGATGTGGCAAGTAATAAATGAAAAA 57.059 25.926 0.00 0.00 0.00 1.94
422 423 8.887264 AAGAGGCATATAGTAACATAGCTAGT 57.113 34.615 0.00 0.00 0.00 2.57
423 424 8.887264 AGAGGCATATAGTAACATAGCTAGTT 57.113 34.615 0.00 6.69 0.00 2.24
424 425 9.976776 AGAGGCATATAGTAACATAGCTAGTTA 57.023 33.333 0.00 5.74 0.00 2.24
458 459 8.783833 ATGAGTAACATCATACATATCAAGGC 57.216 34.615 0.00 0.00 38.15 4.35
459 460 7.734942 TGAGTAACATCATACATATCAAGGCA 58.265 34.615 0.00 0.00 0.00 4.75
460 461 8.210265 TGAGTAACATCATACATATCAAGGCAA 58.790 33.333 0.00 0.00 0.00 4.52
461 462 8.613060 AGTAACATCATACATATCAAGGCAAG 57.387 34.615 0.00 0.00 0.00 4.01
462 463 8.432013 AGTAACATCATACATATCAAGGCAAGA 58.568 33.333 0.00 0.00 0.00 3.02
463 464 9.224267 GTAACATCATACATATCAAGGCAAGAT 57.776 33.333 0.00 0.00 0.00 2.40
464 465 7.683437 ACATCATACATATCAAGGCAAGATG 57.317 36.000 0.00 0.00 36.24 2.90
465 466 7.455891 ACATCATACATATCAAGGCAAGATGA 58.544 34.615 0.00 0.00 34.73 2.92
466 467 7.606839 ACATCATACATATCAAGGCAAGATGAG 59.393 37.037 0.00 0.00 34.73 2.90
467 468 7.071069 TCATACATATCAAGGCAAGATGAGT 57.929 36.000 2.43 3.74 0.00 3.41
468 469 7.157347 TCATACATATCAAGGCAAGATGAGTC 58.843 38.462 2.43 0.00 0.00 3.36
469 470 5.627182 ACATATCAAGGCAAGATGAGTCT 57.373 39.130 2.43 0.00 35.82 3.24
470 471 6.737720 ACATATCAAGGCAAGATGAGTCTA 57.262 37.500 2.43 0.00 33.30 2.59
471 472 7.129457 ACATATCAAGGCAAGATGAGTCTAA 57.871 36.000 2.43 0.00 33.30 2.10
472 473 7.568349 ACATATCAAGGCAAGATGAGTCTAAA 58.432 34.615 2.43 0.00 33.30 1.85
473 474 7.714377 ACATATCAAGGCAAGATGAGTCTAAAG 59.286 37.037 2.43 0.00 33.30 1.85
474 475 4.256920 TCAAGGCAAGATGAGTCTAAAGC 58.743 43.478 0.00 0.00 33.30 3.51
475 476 3.988976 AGGCAAGATGAGTCTAAAGCA 57.011 42.857 0.00 0.00 33.30 3.91
476 477 4.500499 AGGCAAGATGAGTCTAAAGCAT 57.500 40.909 0.00 0.00 33.30 3.79
477 478 5.620738 AGGCAAGATGAGTCTAAAGCATA 57.379 39.130 0.00 0.00 33.30 3.14
478 479 5.994250 AGGCAAGATGAGTCTAAAGCATAA 58.006 37.500 0.00 0.00 33.30 1.90
479 480 6.599445 AGGCAAGATGAGTCTAAAGCATAAT 58.401 36.000 0.00 0.00 33.30 1.28
480 481 7.739825 AGGCAAGATGAGTCTAAAGCATAATA 58.260 34.615 0.00 0.00 33.30 0.98
481 482 8.213679 AGGCAAGATGAGTCTAAAGCATAATAA 58.786 33.333 0.00 0.00 33.30 1.40
482 483 8.840321 GGCAAGATGAGTCTAAAGCATAATAAA 58.160 33.333 0.00 0.00 33.30 1.40
503 504 9.801873 AATAAATGAAGTATTGCATGTTACCAC 57.198 29.630 0.00 0.00 0.00 4.16
504 505 6.832520 AATGAAGTATTGCATGTTACCACA 57.167 33.333 0.00 0.00 37.31 4.17
505 506 5.621197 TGAAGTATTGCATGTTACCACAC 57.379 39.130 0.00 0.00 35.03 3.82
506 507 5.066593 TGAAGTATTGCATGTTACCACACA 58.933 37.500 0.00 0.00 35.03 3.72
507 508 5.709631 TGAAGTATTGCATGTTACCACACAT 59.290 36.000 0.00 0.00 37.93 3.21
508 509 6.881602 TGAAGTATTGCATGTTACCACACATA 59.118 34.615 0.00 0.00 35.51 2.29
509 510 7.555914 TGAAGTATTGCATGTTACCACACATAT 59.444 33.333 0.00 0.00 35.51 1.78
510 511 7.263100 AGTATTGCATGTTACCACACATATG 57.737 36.000 0.00 0.00 35.51 1.78
511 512 6.828273 AGTATTGCATGTTACCACACATATGT 59.172 34.615 1.41 1.41 40.80 2.29
512 513 5.973899 TTGCATGTTACCACACATATGTT 57.026 34.783 5.37 0.00 36.72 2.71
513 514 7.637631 ATTGCATGTTACCACACATATGTTA 57.362 32.000 5.37 0.00 36.72 2.41
514 515 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
515 516 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
516 517 6.315144 TGCATGTTACCACACATATGTTACTC 59.685 38.462 5.37 0.00 36.72 2.59
517 518 6.238374 GCATGTTACCACACATATGTTACTCC 60.238 42.308 5.37 0.00 36.72 3.85
518 519 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
519 520 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
520 521 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
521 522 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
522 523 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
523 524 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
524 525 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
525 526 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
526 527 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
527 528 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
528 529 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
529 530 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
530 531 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
531 532 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
532 533 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
533 534 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
534 535 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
535 536 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
536 537 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
537 538 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
538 539 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
539 540 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
540 541 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
541 542 7.296628 TCCCCACTATAGAGGTAGTAACATAGT 59.703 40.741 14.29 0.00 33.29 2.12
542 543 7.393796 CCCCACTATAGAGGTAGTAACATAGTG 59.606 44.444 14.29 13.55 42.53 2.74
543 544 7.943447 CCCACTATAGAGGTAGTAACATAGTGT 59.057 40.741 16.89 0.67 41.86 3.55
551 552 9.917887 AGAGGTAGTAACATAGTGTAGTAACAT 57.082 33.333 0.00 0.00 38.08 2.71
552 553 9.947669 GAGGTAGTAACATAGTGTAGTAACATG 57.052 37.037 0.00 0.00 38.08 3.21
553 554 8.910944 AGGTAGTAACATAGTGTAGTAACATGG 58.089 37.037 0.00 0.00 38.08 3.66
554 555 8.139989 GGTAGTAACATAGTGTAGTAACATGGG 58.860 40.741 0.00 0.00 38.08 4.00
555 556 6.579865 AGTAACATAGTGTAGTAACATGGGC 58.420 40.000 0.00 0.00 38.08 5.36
556 557 5.429681 AACATAGTGTAGTAACATGGGCA 57.570 39.130 0.00 0.00 38.08 5.36
557 558 5.630415 ACATAGTGTAGTAACATGGGCAT 57.370 39.130 0.00 0.00 38.08 4.40
558 559 5.368145 ACATAGTGTAGTAACATGGGCATG 58.632 41.667 0.00 0.00 44.15 4.06
568 569 2.425143 CATGGGCATGTTACCACTCT 57.575 50.000 7.86 0.00 40.05 3.24
569 570 3.558931 CATGGGCATGTTACCACTCTA 57.441 47.619 7.86 0.00 40.05 2.43
570 571 4.090761 CATGGGCATGTTACCACTCTAT 57.909 45.455 7.86 0.00 40.05 1.98
571 572 3.558931 TGGGCATGTTACCACTCTATG 57.441 47.619 0.00 0.00 0.00 2.23
572 573 2.843730 TGGGCATGTTACCACTCTATGT 59.156 45.455 0.00 0.00 0.00 2.29
573 574 3.265737 TGGGCATGTTACCACTCTATGTT 59.734 43.478 0.00 0.00 0.00 2.71
574 575 4.471747 TGGGCATGTTACCACTCTATGTTA 59.528 41.667 0.00 0.00 0.00 2.41
575 576 4.814771 GGGCATGTTACCACTCTATGTTAC 59.185 45.833 0.00 0.00 0.00 2.50
576 577 5.396436 GGGCATGTTACCACTCTATGTTACT 60.396 44.000 0.00 0.00 0.00 2.24
577 578 6.183360 GGGCATGTTACCACTCTATGTTACTA 60.183 42.308 0.00 0.00 0.00 1.82
578 579 6.700520 GGCATGTTACCACTCTATGTTACTAC 59.299 42.308 0.00 0.00 0.00 2.73
579 580 6.700520 GCATGTTACCACTCTATGTTACTACC 59.299 42.308 0.00 0.00 0.00 3.18
580 581 6.780457 TGTTACCACTCTATGTTACTACCC 57.220 41.667 0.00 0.00 0.00 3.69
581 582 6.255287 TGTTACCACTCTATGTTACTACCCA 58.745 40.000 0.00 0.00 0.00 4.51
582 583 6.899075 TGTTACCACTCTATGTTACTACCCAT 59.101 38.462 0.00 0.00 0.00 4.00
583 584 7.400915 TGTTACCACTCTATGTTACTACCCATT 59.599 37.037 0.00 0.00 0.00 3.16
584 585 6.235231 ACCACTCTATGTTACTACCCATTG 57.765 41.667 0.00 0.00 0.00 2.82
585 586 5.724854 ACCACTCTATGTTACTACCCATTGT 59.275 40.000 0.00 0.00 0.00 2.71
586 587 6.049149 CCACTCTATGTTACTACCCATTGTG 58.951 44.000 0.00 0.00 0.00 3.33
587 588 6.049149 CACTCTATGTTACTACCCATTGTGG 58.951 44.000 0.00 0.00 37.25 4.17
588 589 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
589 590 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
590 591 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
591 592 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
592 593 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
593 594 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
594 595 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
595 596 3.990369 ACTACCCATTGTGGCTAGTCTA 58.010 45.455 0.00 0.00 35.79 2.59
596 597 4.359105 ACTACCCATTGTGGCTAGTCTAA 58.641 43.478 0.00 0.00 35.79 2.10
597 598 3.914426 ACCCATTGTGGCTAGTCTAAG 57.086 47.619 0.00 0.00 35.79 2.18
598 599 2.092914 ACCCATTGTGGCTAGTCTAAGC 60.093 50.000 0.00 0.00 41.99 3.09
599 600 2.092968 CCCATTGTGGCTAGTCTAAGCA 60.093 50.000 0.00 0.00 44.64 3.91
609 610 5.932303 TGGCTAGTCTAAGCAACTAAGTTTG 59.068 40.000 0.00 0.00 44.64 2.93
640 641 6.389091 TCATTATTTGTCCATTGCTGAACAC 58.611 36.000 0.00 0.00 0.00 3.32
657 658 5.900425 TGAACACAGCTTCTTTATTTGCAA 58.100 33.333 0.00 0.00 0.00 4.08
658 659 5.748152 TGAACACAGCTTCTTTATTTGCAAC 59.252 36.000 0.00 0.00 0.00 4.17
660 661 5.906073 ACACAGCTTCTTTATTTGCAACTT 58.094 33.333 0.00 0.00 0.00 2.66
661 662 7.038154 ACACAGCTTCTTTATTTGCAACTTA 57.962 32.000 0.00 0.00 0.00 2.24
668 669 7.306574 GCTTCTTTATTTGCAACTTACACCAAC 60.307 37.037 0.00 0.00 0.00 3.77
749 750 9.338622 AGAGGGTCAAAATAAAATATAAGGACG 57.661 33.333 0.00 0.00 0.00 4.79
752 753 8.895737 GGGTCAAAATAAAATATAAGGACGTCA 58.104 33.333 18.91 0.00 0.00 4.35
770 771 6.192234 ACGTCAATGTCTCGACTTAGTAAT 57.808 37.500 0.00 0.00 0.00 1.89
777 778 7.867305 ATGTCTCGACTTAGTAATGAAGAGA 57.133 36.000 0.00 4.44 0.00 3.10
869 870 7.463544 TGCAGTATATTTGTTTTCACGATCAG 58.536 34.615 0.00 0.00 0.00 2.90
870 871 6.907212 GCAGTATATTTGTTTTCACGATCAGG 59.093 38.462 0.00 0.00 0.00 3.86
903 934 1.060122 CCGTTGACGCCGAATTACTTC 59.940 52.381 0.00 0.00 38.18 3.01
910 941 4.569162 TGACGCCGAATTACTTCCAATTAG 59.431 41.667 0.00 0.00 0.00 1.73
943 974 1.750193 AGTTGGGTTGGATGTATGCG 58.250 50.000 0.00 0.00 0.00 4.73
959 990 6.779115 TGTATGCGGTATGCTATAAAGTTG 57.221 37.500 0.00 0.00 46.63 3.16
968 999 7.415229 GGTATGCTATAAAGTTGGTTGTTAGC 58.585 38.462 0.00 0.00 0.00 3.09
982 1014 0.807496 GTTAGCCTCAAAGCCAGCAG 59.193 55.000 0.00 0.00 0.00 4.24
992 1024 4.847255 GCCAGCAGCTAAAACACG 57.153 55.556 0.00 0.00 38.99 4.49
1027 1079 9.077885 TGGAGATTTTCTTAAGTTTGTGCTTAT 57.922 29.630 1.63 0.00 31.83 1.73
1065 1117 4.154375 GTGCTAGTCCTTTGGTTTCTTAGC 59.846 45.833 0.00 0.00 0.00 3.09
1072 1124 3.759086 CCTTTGGTTTCTTAGCTCTTCCC 59.241 47.826 0.00 0.00 0.00 3.97
1074 1126 4.657814 TTGGTTTCTTAGCTCTTCCCAT 57.342 40.909 0.00 0.00 0.00 4.00
1080 1132 4.478206 TCTTAGCTCTTCCCATGACAAG 57.522 45.455 0.00 0.00 0.00 3.16
1081 1133 3.840666 TCTTAGCTCTTCCCATGACAAGT 59.159 43.478 0.00 0.00 0.00 3.16
1416 1468 1.373497 CTGCGTCGTGGAGCTTCTT 60.373 57.895 0.00 0.00 0.00 2.52
1455 1507 1.898574 CATGGCGTCCATTAGGGCC 60.899 63.158 8.42 0.00 42.23 5.80
1462 1514 0.759436 GTCCATTAGGGCCGAGGAGA 60.759 60.000 9.09 0.00 36.21 3.71
1521 1576 2.426023 GGCACCGTGAACCTCAGT 59.574 61.111 1.65 0.00 0.00 3.41
1674 1729 0.038526 TCTTCCCGTCGTCAAAGCTC 60.039 55.000 0.00 0.00 0.00 4.09
1739 1794 2.031616 CCGGATCCAGCGCATCAT 59.968 61.111 11.47 0.00 0.00 2.45
1740 1795 2.031516 CCGGATCCAGCGCATCATC 61.032 63.158 11.47 7.07 0.00 2.92
1741 1796 2.378084 CGGATCCAGCGCATCATCG 61.378 63.158 11.47 2.09 0.00 3.84
1742 1797 1.005748 GGATCCAGCGCATCATCGA 60.006 57.895 11.47 0.00 0.00 3.59
1743 1798 1.287730 GGATCCAGCGCATCATCGAC 61.288 60.000 11.47 0.00 0.00 4.20
1744 1799 0.598419 GATCCAGCGCATCATCGACA 60.598 55.000 11.47 0.00 0.00 4.35
1745 1800 0.179076 ATCCAGCGCATCATCGACAA 60.179 50.000 11.47 0.00 0.00 3.18
1746 1801 1.083806 TCCAGCGCATCATCGACAAC 61.084 55.000 11.47 0.00 0.00 3.32
1747 1802 1.360931 CCAGCGCATCATCGACAACA 61.361 55.000 11.47 0.00 0.00 3.33
1748 1803 0.654160 CAGCGCATCATCGACAACAT 59.346 50.000 11.47 0.00 0.00 2.71
1749 1804 0.933097 AGCGCATCATCGACAACATC 59.067 50.000 11.47 0.00 0.00 3.06
1750 1805 0.652071 GCGCATCATCGACAACATCA 59.348 50.000 0.30 0.00 0.00 3.07
1883 1956 1.027792 ACCGCGGAAATAATTGGCGT 61.028 50.000 35.90 0.00 44.90 5.68
1901 1974 3.262420 GCGTGGTCATCTTTGTGAGTAT 58.738 45.455 0.00 0.00 0.00 2.12
1902 1975 3.062639 GCGTGGTCATCTTTGTGAGTATG 59.937 47.826 0.00 0.00 0.00 2.39
1903 1976 3.062639 CGTGGTCATCTTTGTGAGTATGC 59.937 47.826 0.00 0.00 0.00 3.14
1904 1977 3.375299 GTGGTCATCTTTGTGAGTATGCC 59.625 47.826 0.00 0.00 0.00 4.40
1905 1978 2.609459 GGTCATCTTTGTGAGTATGCCG 59.391 50.000 0.00 0.00 0.00 5.69
1906 1979 3.521560 GTCATCTTTGTGAGTATGCCGA 58.478 45.455 0.00 0.00 0.00 5.54
1920 1993 5.880901 AGTATGCCGATTATTCCATTCCTT 58.119 37.500 0.00 0.00 0.00 3.36
1921 1994 6.306987 AGTATGCCGATTATTCCATTCCTTT 58.693 36.000 0.00 0.00 0.00 3.11
1927 2000 6.293680 GCCGATTATTCCATTCCTTTTCTCTC 60.294 42.308 0.00 0.00 0.00 3.20
1942 2022 8.487028 TCCTTTTCTCTCAATTTCCTATACTCC 58.513 37.037 0.00 0.00 0.00 3.85
1953 2033 6.611613 TTTCCTATACTCCTATGCCATGAG 57.388 41.667 0.00 0.00 0.00 2.90
1954 2034 4.026744 TCCTATACTCCTATGCCATGAGC 58.973 47.826 0.00 0.00 44.14 4.26
1955 2035 3.133721 CCTATACTCCTATGCCATGAGCC 59.866 52.174 0.00 0.00 42.71 4.70
1956 2036 1.352083 TACTCCTATGCCATGAGCCC 58.648 55.000 0.00 0.00 42.71 5.19
1957 2037 0.695462 ACTCCTATGCCATGAGCCCA 60.695 55.000 0.00 0.00 42.71 5.36
1958 2038 0.697079 CTCCTATGCCATGAGCCCAT 59.303 55.000 0.00 0.00 42.71 4.00
1972 2052 3.010027 TGAGCCCATGACACAAGGAATAA 59.990 43.478 0.00 0.00 0.00 1.40
1986 2066 5.995897 ACAAGGAATAATAGGCGTGGTTATC 59.004 40.000 0.00 0.00 0.00 1.75
1987 2067 6.183361 ACAAGGAATAATAGGCGTGGTTATCT 60.183 38.462 0.00 0.00 0.00 1.98
1988 2068 7.015877 ACAAGGAATAATAGGCGTGGTTATCTA 59.984 37.037 0.00 0.00 0.00 1.98
1989 2069 7.549147 AGGAATAATAGGCGTGGTTATCTAA 57.451 36.000 0.00 0.00 0.00 2.10
1990 2070 7.384477 AGGAATAATAGGCGTGGTTATCTAAC 58.616 38.462 0.00 0.00 35.50 2.34
1991 2071 7.234988 AGGAATAATAGGCGTGGTTATCTAACT 59.765 37.037 0.52 0.00 36.47 2.24
1994 2074 6.720112 AATAGGCGTGGTTATCTAACTACA 57.280 37.500 14.42 0.00 44.70 2.74
1995 2075 4.650754 AGGCGTGGTTATCTAACTACAG 57.349 45.455 14.42 9.37 44.70 2.74
1996 2076 4.021916 AGGCGTGGTTATCTAACTACAGT 58.978 43.478 14.42 0.00 44.70 3.55
1997 2077 5.195940 AGGCGTGGTTATCTAACTACAGTA 58.804 41.667 14.42 0.00 44.70 2.74
1998 2078 5.832060 AGGCGTGGTTATCTAACTACAGTAT 59.168 40.000 14.42 0.00 44.70 2.12
1999 2079 6.016443 AGGCGTGGTTATCTAACTACAGTATC 60.016 42.308 14.42 2.44 44.70 2.24
2000 2080 6.016443 GGCGTGGTTATCTAACTACAGTATCT 60.016 42.308 14.42 0.00 44.70 1.98
2001 2081 7.173907 GGCGTGGTTATCTAACTACAGTATCTA 59.826 40.741 14.42 0.00 44.70 1.98
2002 2082 8.562892 GCGTGGTTATCTAACTACAGTATCTAA 58.437 37.037 14.42 0.00 44.70 2.10
2457 3943 3.416156 GGCCTTCTCTGTCAACTTGAAT 58.584 45.455 0.00 0.00 0.00 2.57
2572 4058 1.806247 CGCAGGCAAGGAATCGTGATA 60.806 52.381 0.00 0.00 0.00 2.15
2585 4071 6.039493 AGGAATCGTGATAGAAATAGTCGTGT 59.961 38.462 0.00 0.00 0.00 4.49
2605 4091 5.277490 CGTGTTTCTGTGATTGATTGACAGT 60.277 40.000 0.00 0.00 38.60 3.55
2637 4123 3.008923 TGCTGAGACTTGAGAGAGAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
2638 4124 3.624861 GCTGAGACTTGAGAGAGAGAGAG 59.375 52.174 0.00 0.00 0.00 3.20
2639 4125 4.623886 GCTGAGACTTGAGAGAGAGAGAGA 60.624 50.000 0.00 0.00 0.00 3.10
2640 4126 5.089970 TGAGACTTGAGAGAGAGAGAGAG 57.910 47.826 0.00 0.00 0.00 3.20
2641 4127 4.777366 TGAGACTTGAGAGAGAGAGAGAGA 59.223 45.833 0.00 0.00 0.00 3.10
2642 4128 5.105187 TGAGACTTGAGAGAGAGAGAGAGAG 60.105 48.000 0.00 0.00 0.00 3.20
2643 4129 5.026121 AGACTTGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
2644 4130 5.128499 AGACTTGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
2645 4131 5.026121 ACTTGAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
2646 4132 5.128499 ACTTGAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
2647 4133 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
2648 4134 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2649 4135 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2650 4136 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2651 4137 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2652 4138 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2693 4179 3.625313 TGGCATGGTTCGTTGTGTATATG 59.375 43.478 0.00 0.00 0.00 1.78
2795 6065 7.559170 AGGAAGAGATTGTTGGATGGAATTAAG 59.441 37.037 0.00 0.00 0.00 1.85
2865 6135 8.012241 GCTTAGCTTGCAAGTTATGTATACATC 58.988 37.037 26.55 8.88 37.76 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.305769 TGGACATGCAATAAAAGTTGTGC 58.694 39.130 0.00 0.00 37.51 4.57
15 16 6.645827 TGAATGGACATGCAATAAAAGTTGTG 59.354 34.615 0.00 0.00 0.00 3.33
16 17 6.646240 GTGAATGGACATGCAATAAAAGTTGT 59.354 34.615 0.00 0.00 0.00 3.32
17 18 6.645827 TGTGAATGGACATGCAATAAAAGTTG 59.354 34.615 0.00 0.00 0.00 3.16
18 19 6.757237 TGTGAATGGACATGCAATAAAAGTT 58.243 32.000 0.00 0.00 0.00 2.66
19 20 6.343716 TGTGAATGGACATGCAATAAAAGT 57.656 33.333 0.00 0.00 0.00 2.66
20 21 7.229228 CATGTGAATGGACATGCAATAAAAG 57.771 36.000 0.00 0.00 45.00 2.27
30 31 1.825090 ACGCACATGTGAATGGACAT 58.175 45.000 29.80 0.00 37.01 3.06
31 32 1.266446 CAACGCACATGTGAATGGACA 59.734 47.619 29.80 0.00 0.00 4.02
32 33 1.266718 ACAACGCACATGTGAATGGAC 59.733 47.619 29.80 9.33 0.00 4.02
33 34 1.603456 ACAACGCACATGTGAATGGA 58.397 45.000 29.80 0.00 0.00 3.41
34 35 3.763097 ATACAACGCACATGTGAATGG 57.237 42.857 29.80 15.42 32.27 3.16
35 36 6.485393 TGAATATACAACGCACATGTGAATG 58.515 36.000 29.80 23.14 32.27 2.67
36 37 6.676237 TGAATATACAACGCACATGTGAAT 57.324 33.333 29.80 13.11 32.27 2.57
37 38 6.509358 CGATGAATATACAACGCACATGTGAA 60.509 38.462 29.80 6.93 32.27 3.18
38 39 5.051106 CGATGAATATACAACGCACATGTGA 60.051 40.000 29.80 7.62 32.27 3.58
39 40 5.051106 TCGATGAATATACAACGCACATGTG 60.051 40.000 21.83 21.83 36.35 3.21
40 41 5.047188 TCGATGAATATACAACGCACATGT 58.953 37.500 0.00 0.00 36.35 3.21
41 42 5.365942 GTCGATGAATATACAACGCACATG 58.634 41.667 0.00 0.00 36.35 3.21
42 43 4.447724 GGTCGATGAATATACAACGCACAT 59.552 41.667 0.00 0.00 36.35 3.21
43 44 3.799963 GGTCGATGAATATACAACGCACA 59.200 43.478 0.00 0.00 36.35 4.57
44 45 3.799963 TGGTCGATGAATATACAACGCAC 59.200 43.478 0.00 0.00 36.35 5.34
45 46 4.048241 TGGTCGATGAATATACAACGCA 57.952 40.909 0.00 0.00 36.35 5.24
46 47 4.666655 GCATGGTCGATGAATATACAACGC 60.667 45.833 0.00 0.00 36.35 4.84
47 48 4.447389 TGCATGGTCGATGAATATACAACG 59.553 41.667 0.00 0.00 37.39 4.10
48 49 5.236263 TGTGCATGGTCGATGAATATACAAC 59.764 40.000 0.00 0.00 33.31 3.32
49 50 5.363939 TGTGCATGGTCGATGAATATACAA 58.636 37.500 0.00 0.00 33.31 2.41
50 51 4.954875 TGTGCATGGTCGATGAATATACA 58.045 39.130 0.00 0.00 33.31 2.29
51 52 5.466728 AGTTGTGCATGGTCGATGAATATAC 59.533 40.000 0.00 0.00 33.31 1.47
52 53 5.610398 AGTTGTGCATGGTCGATGAATATA 58.390 37.500 0.00 0.00 33.31 0.86
53 54 4.454678 AGTTGTGCATGGTCGATGAATAT 58.545 39.130 0.00 0.00 33.31 1.28
54 55 3.872696 AGTTGTGCATGGTCGATGAATA 58.127 40.909 0.00 0.00 33.31 1.75
55 56 2.715046 AGTTGTGCATGGTCGATGAAT 58.285 42.857 0.00 0.00 33.31 2.57
56 57 2.183478 AGTTGTGCATGGTCGATGAA 57.817 45.000 0.00 0.00 33.31 2.57
57 58 2.028567 TGTAGTTGTGCATGGTCGATGA 60.029 45.455 0.00 0.00 33.31 2.92
58 59 2.345876 TGTAGTTGTGCATGGTCGATG 58.654 47.619 0.00 0.00 34.84 3.84
59 60 2.760634 TGTAGTTGTGCATGGTCGAT 57.239 45.000 0.00 0.00 0.00 3.59
60 61 2.760634 ATGTAGTTGTGCATGGTCGA 57.239 45.000 0.00 0.00 0.00 4.20
61 62 3.829886 AAATGTAGTTGTGCATGGTCG 57.170 42.857 0.00 0.00 0.00 4.79
62 63 5.621197 TGTAAATGTAGTTGTGCATGGTC 57.379 39.130 0.00 0.00 0.00 4.02
63 64 6.884295 AGTATGTAAATGTAGTTGTGCATGGT 59.116 34.615 0.00 0.00 0.00 3.55
64 65 7.320443 AGTATGTAAATGTAGTTGTGCATGG 57.680 36.000 0.00 0.00 0.00 3.66
65 66 9.277565 GAAAGTATGTAAATGTAGTTGTGCATG 57.722 33.333 0.00 0.00 0.00 4.06
66 67 9.231297 AGAAAGTATGTAAATGTAGTTGTGCAT 57.769 29.630 0.00 0.00 0.00 3.96
67 68 8.615878 AGAAAGTATGTAAATGTAGTTGTGCA 57.384 30.769 0.00 0.00 0.00 4.57
82 83 9.482627 CTGTTCTTGTTTCTCTAGAAAGTATGT 57.517 33.333 5.41 0.00 43.82 2.29
83 84 9.482627 ACTGTTCTTGTTTCTCTAGAAAGTATG 57.517 33.333 5.41 2.11 43.82 2.39
86 87 9.886132 TTTACTGTTCTTGTTTCTCTAGAAAGT 57.114 29.630 5.41 1.00 43.82 2.66
115 116 8.525290 TCTCATTCTCTTTGTTTCCTCTTTTT 57.475 30.769 0.00 0.00 0.00 1.94
116 117 7.777440 ACTCTCATTCTCTTTGTTTCCTCTTTT 59.223 33.333 0.00 0.00 0.00 2.27
117 118 7.228308 CACTCTCATTCTCTTTGTTTCCTCTTT 59.772 37.037 0.00 0.00 0.00 2.52
118 119 6.709846 CACTCTCATTCTCTTTGTTTCCTCTT 59.290 38.462 0.00 0.00 0.00 2.85
119 120 6.229733 CACTCTCATTCTCTTTGTTTCCTCT 58.770 40.000 0.00 0.00 0.00 3.69
120 121 5.411053 CCACTCTCATTCTCTTTGTTTCCTC 59.589 44.000 0.00 0.00 0.00 3.71
121 122 5.072329 TCCACTCTCATTCTCTTTGTTTCCT 59.928 40.000 0.00 0.00 0.00 3.36
122 123 5.308825 TCCACTCTCATTCTCTTTGTTTCC 58.691 41.667 0.00 0.00 0.00 3.13
123 124 6.867662 TTCCACTCTCATTCTCTTTGTTTC 57.132 37.500 0.00 0.00 0.00 2.78
124 125 7.645058 TTTTCCACTCTCATTCTCTTTGTTT 57.355 32.000 0.00 0.00 0.00 2.83
125 126 7.830099 ATTTTCCACTCTCATTCTCTTTGTT 57.170 32.000 0.00 0.00 0.00 2.83
126 127 8.378565 TCTATTTTCCACTCTCATTCTCTTTGT 58.621 33.333 0.00 0.00 0.00 2.83
127 128 8.783833 TCTATTTTCCACTCTCATTCTCTTTG 57.216 34.615 0.00 0.00 0.00 2.77
128 129 9.447157 CTTCTATTTTCCACTCTCATTCTCTTT 57.553 33.333 0.00 0.00 0.00 2.52
129 130 8.601546 ACTTCTATTTTCCACTCTCATTCTCTT 58.398 33.333 0.00 0.00 0.00 2.85
130 131 8.040132 CACTTCTATTTTCCACTCTCATTCTCT 58.960 37.037 0.00 0.00 0.00 3.10
131 132 8.037758 TCACTTCTATTTTCCACTCTCATTCTC 58.962 37.037 0.00 0.00 0.00 2.87
132 133 7.911651 TCACTTCTATTTTCCACTCTCATTCT 58.088 34.615 0.00 0.00 0.00 2.40
133 134 8.553459 TTCACTTCTATTTTCCACTCTCATTC 57.447 34.615 0.00 0.00 0.00 2.67
134 135 8.924511 TTTCACTTCTATTTTCCACTCTCATT 57.075 30.769 0.00 0.00 0.00 2.57
135 136 8.924511 TTTTCACTTCTATTTTCCACTCTCAT 57.075 30.769 0.00 0.00 0.00 2.90
136 137 8.924511 ATTTTCACTTCTATTTTCCACTCTCA 57.075 30.769 0.00 0.00 0.00 3.27
140 141 9.807921 TCCTTATTTTCACTTCTATTTTCCACT 57.192 29.630 0.00 0.00 0.00 4.00
147 148 9.467796 CCTTCCTTCCTTATTTTCACTTCTATT 57.532 33.333 0.00 0.00 0.00 1.73
148 149 7.558081 GCCTTCCTTCCTTATTTTCACTTCTAT 59.442 37.037 0.00 0.00 0.00 1.98
149 150 6.884836 GCCTTCCTTCCTTATTTTCACTTCTA 59.115 38.462 0.00 0.00 0.00 2.10
150 151 5.712446 GCCTTCCTTCCTTATTTTCACTTCT 59.288 40.000 0.00 0.00 0.00 2.85
151 152 5.476945 TGCCTTCCTTCCTTATTTTCACTTC 59.523 40.000 0.00 0.00 0.00 3.01
152 153 5.393866 TGCCTTCCTTCCTTATTTTCACTT 58.606 37.500 0.00 0.00 0.00 3.16
153 154 4.998051 TGCCTTCCTTCCTTATTTTCACT 58.002 39.130 0.00 0.00 0.00 3.41
154 155 5.722021 TTGCCTTCCTTCCTTATTTTCAC 57.278 39.130 0.00 0.00 0.00 3.18
155 156 6.098982 TGTTTTGCCTTCCTTCCTTATTTTCA 59.901 34.615 0.00 0.00 0.00 2.69
156 157 6.521162 TGTTTTGCCTTCCTTCCTTATTTTC 58.479 36.000 0.00 0.00 0.00 2.29
157 158 6.493189 TGTTTTGCCTTCCTTCCTTATTTT 57.507 33.333 0.00 0.00 0.00 1.82
158 159 6.493189 TTGTTTTGCCTTCCTTCCTTATTT 57.507 33.333 0.00 0.00 0.00 1.40
159 160 6.466812 CATTGTTTTGCCTTCCTTCCTTATT 58.533 36.000 0.00 0.00 0.00 1.40
160 161 5.046376 CCATTGTTTTGCCTTCCTTCCTTAT 60.046 40.000 0.00 0.00 0.00 1.73
161 162 4.283212 CCATTGTTTTGCCTTCCTTCCTTA 59.717 41.667 0.00 0.00 0.00 2.69
162 163 3.071457 CCATTGTTTTGCCTTCCTTCCTT 59.929 43.478 0.00 0.00 0.00 3.36
163 164 2.634453 CCATTGTTTTGCCTTCCTTCCT 59.366 45.455 0.00 0.00 0.00 3.36
164 165 2.632512 TCCATTGTTTTGCCTTCCTTCC 59.367 45.455 0.00 0.00 0.00 3.46
165 166 4.335400 TTCCATTGTTTTGCCTTCCTTC 57.665 40.909 0.00 0.00 0.00 3.46
166 167 4.980339 ATTCCATTGTTTTGCCTTCCTT 57.020 36.364 0.00 0.00 0.00 3.36
167 168 4.980339 AATTCCATTGTTTTGCCTTCCT 57.020 36.364 0.00 0.00 0.00 3.36
168 169 6.183360 ACAAAAATTCCATTGTTTTGCCTTCC 60.183 34.615 7.76 0.00 43.05 3.46
169 170 6.794374 ACAAAAATTCCATTGTTTTGCCTTC 58.206 32.000 7.76 0.00 43.05 3.46
170 171 6.772360 ACAAAAATTCCATTGTTTTGCCTT 57.228 29.167 7.76 0.00 43.05 4.35
171 172 7.501892 ACATACAAAAATTCCATTGTTTTGCCT 59.498 29.630 8.84 0.00 43.05 4.75
172 173 7.647228 ACATACAAAAATTCCATTGTTTTGCC 58.353 30.769 8.84 0.00 43.05 4.52
173 174 8.956014 CAACATACAAAAATTCCATTGTTTTGC 58.044 29.630 8.84 0.00 43.05 3.68
177 178 8.505625 GCATCAACATACAAAAATTCCATTGTT 58.494 29.630 8.84 0.00 40.14 2.83
178 179 7.660617 TGCATCAACATACAAAAATTCCATTGT 59.339 29.630 8.64 8.64 42.16 2.71
179 180 8.030744 TGCATCAACATACAAAAATTCCATTG 57.969 30.769 0.00 0.00 0.00 2.82
180 181 8.618702 TTGCATCAACATACAAAAATTCCATT 57.381 26.923 0.00 0.00 0.00 3.16
181 182 7.148373 GCTTGCATCAACATACAAAAATTCCAT 60.148 33.333 0.00 0.00 0.00 3.41
182 183 6.147492 GCTTGCATCAACATACAAAAATTCCA 59.853 34.615 0.00 0.00 0.00 3.53
183 184 6.369615 AGCTTGCATCAACATACAAAAATTCC 59.630 34.615 0.00 0.00 0.00 3.01
184 185 7.231607 CAGCTTGCATCAACATACAAAAATTC 58.768 34.615 0.00 0.00 0.00 2.17
185 186 6.148150 CCAGCTTGCATCAACATACAAAAATT 59.852 34.615 0.00 0.00 0.00 1.82
186 187 5.640357 CCAGCTTGCATCAACATACAAAAAT 59.360 36.000 0.00 0.00 0.00 1.82
187 188 4.989797 CCAGCTTGCATCAACATACAAAAA 59.010 37.500 0.00 0.00 0.00 1.94
188 189 4.280425 TCCAGCTTGCATCAACATACAAAA 59.720 37.500 0.00 0.00 0.00 2.44
189 190 3.825585 TCCAGCTTGCATCAACATACAAA 59.174 39.130 0.00 0.00 0.00 2.83
190 191 3.419943 TCCAGCTTGCATCAACATACAA 58.580 40.909 0.00 0.00 0.00 2.41
191 192 3.070476 TCCAGCTTGCATCAACATACA 57.930 42.857 0.00 0.00 0.00 2.29
192 193 3.628942 TCATCCAGCTTGCATCAACATAC 59.371 43.478 0.00 0.00 0.00 2.39
193 194 3.888583 TCATCCAGCTTGCATCAACATA 58.111 40.909 0.00 0.00 0.00 2.29
194 195 2.730382 TCATCCAGCTTGCATCAACAT 58.270 42.857 0.00 0.00 0.00 2.71
195 196 2.203470 TCATCCAGCTTGCATCAACA 57.797 45.000 0.00 0.00 0.00 3.33
196 197 3.581024 TTTCATCCAGCTTGCATCAAC 57.419 42.857 0.00 0.00 0.00 3.18
197 198 3.512329 ACATTTCATCCAGCTTGCATCAA 59.488 39.130 0.00 0.00 0.00 2.57
198 199 3.093814 ACATTTCATCCAGCTTGCATCA 58.906 40.909 0.00 0.00 0.00 3.07
199 200 3.795623 ACATTTCATCCAGCTTGCATC 57.204 42.857 0.00 0.00 0.00 3.91
200 201 4.275810 ACTACATTTCATCCAGCTTGCAT 58.724 39.130 0.00 0.00 0.00 3.96
201 202 3.689347 ACTACATTTCATCCAGCTTGCA 58.311 40.909 0.00 0.00 0.00 4.08
202 203 4.708726 AACTACATTTCATCCAGCTTGC 57.291 40.909 0.00 0.00 0.00 4.01
228 229 9.926158 TGCATGTCATCTTTTTGTTGTATTAAT 57.074 25.926 0.00 0.00 0.00 1.40
229 230 9.190858 GTGCATGTCATCTTTTTGTTGTATTAA 57.809 29.630 0.00 0.00 0.00 1.40
230 231 8.355913 TGTGCATGTCATCTTTTTGTTGTATTA 58.644 29.630 0.00 0.00 0.00 0.98
231 232 7.208777 TGTGCATGTCATCTTTTTGTTGTATT 58.791 30.769 0.00 0.00 0.00 1.89
232 233 6.747125 TGTGCATGTCATCTTTTTGTTGTAT 58.253 32.000 0.00 0.00 0.00 2.29
233 234 6.141560 TGTGCATGTCATCTTTTTGTTGTA 57.858 33.333 0.00 0.00 0.00 2.41
234 235 5.008619 TGTGCATGTCATCTTTTTGTTGT 57.991 34.783 0.00 0.00 0.00 3.32
235 236 4.446385 CCTGTGCATGTCATCTTTTTGTTG 59.554 41.667 0.00 0.00 0.00 3.33
236 237 4.624015 CCTGTGCATGTCATCTTTTTGTT 58.376 39.130 0.00 0.00 0.00 2.83
237 238 3.553508 GCCTGTGCATGTCATCTTTTTGT 60.554 43.478 0.00 0.00 37.47 2.83
238 239 2.991190 GCCTGTGCATGTCATCTTTTTG 59.009 45.455 0.00 0.00 37.47 2.44
239 240 2.028748 GGCCTGTGCATGTCATCTTTTT 60.029 45.455 0.00 0.00 40.13 1.94
240 241 1.547372 GGCCTGTGCATGTCATCTTTT 59.453 47.619 0.00 0.00 40.13 2.27
241 242 1.180029 GGCCTGTGCATGTCATCTTT 58.820 50.000 0.00 0.00 40.13 2.52
242 243 0.038599 TGGCCTGTGCATGTCATCTT 59.961 50.000 3.32 0.00 40.13 2.40
243 244 0.679002 GTGGCCTGTGCATGTCATCT 60.679 55.000 3.32 0.00 40.13 2.90
244 245 0.679002 AGTGGCCTGTGCATGTCATC 60.679 55.000 3.32 0.00 40.13 2.92
245 246 0.251474 AAGTGGCCTGTGCATGTCAT 60.251 50.000 3.32 0.00 40.13 3.06
246 247 0.467844 AAAGTGGCCTGTGCATGTCA 60.468 50.000 3.32 0.00 40.13 3.58
247 248 0.038892 CAAAGTGGCCTGTGCATGTC 60.039 55.000 3.32 0.00 40.13 3.06
248 249 2.043625 CAAAGTGGCCTGTGCATGT 58.956 52.632 3.32 0.00 40.13 3.21
249 250 4.979204 CAAAGTGGCCTGTGCATG 57.021 55.556 3.32 0.00 40.13 4.06
253 254 1.267806 CAACTAGCAAAGTGGCCTGTG 59.732 52.381 3.32 0.00 38.88 3.66
254 255 1.142870 TCAACTAGCAAAGTGGCCTGT 59.857 47.619 3.32 0.00 38.88 4.00
255 256 1.896220 TCAACTAGCAAAGTGGCCTG 58.104 50.000 3.32 0.00 38.88 4.85
256 257 2.656947 TTCAACTAGCAAAGTGGCCT 57.343 45.000 3.32 0.00 38.88 5.19
257 258 5.385509 TTTATTCAACTAGCAAAGTGGCC 57.614 39.130 0.00 0.00 38.88 5.36
258 259 6.856895 AGATTTATTCAACTAGCAAAGTGGC 58.143 36.000 0.00 0.00 38.88 5.01
259 260 9.167311 AGTAGATTTATTCAACTAGCAAAGTGG 57.833 33.333 0.00 0.00 38.88 4.00
270 271 9.569167 GGGCTTGTTTAAGTAGATTTATTCAAC 57.431 33.333 0.00 0.00 36.27 3.18
271 272 8.745590 GGGGCTTGTTTAAGTAGATTTATTCAA 58.254 33.333 0.00 0.00 36.27 2.69
272 273 8.113462 AGGGGCTTGTTTAAGTAGATTTATTCA 58.887 33.333 0.00 0.00 36.27 2.57
273 274 8.521170 AGGGGCTTGTTTAAGTAGATTTATTC 57.479 34.615 0.00 0.00 36.27 1.75
274 275 8.895141 AAGGGGCTTGTTTAAGTAGATTTATT 57.105 30.769 0.00 0.00 36.27 1.40
275 276 7.560262 GGAAGGGGCTTGTTTAAGTAGATTTAT 59.440 37.037 0.00 0.00 36.27 1.40
276 277 6.888088 GGAAGGGGCTTGTTTAAGTAGATTTA 59.112 38.462 0.00 0.00 36.27 1.40
277 278 5.715279 GGAAGGGGCTTGTTTAAGTAGATTT 59.285 40.000 0.00 0.00 36.27 2.17
278 279 5.222254 TGGAAGGGGCTTGTTTAAGTAGATT 60.222 40.000 0.00 0.00 36.27 2.40
279 280 4.291249 TGGAAGGGGCTTGTTTAAGTAGAT 59.709 41.667 0.00 0.00 36.27 1.98
280 281 3.653836 TGGAAGGGGCTTGTTTAAGTAGA 59.346 43.478 0.00 0.00 36.27 2.59
281 282 4.028993 TGGAAGGGGCTTGTTTAAGTAG 57.971 45.455 0.00 0.00 36.27 2.57
282 283 4.668138 ATGGAAGGGGCTTGTTTAAGTA 57.332 40.909 0.00 0.00 36.27 2.24
283 284 3.542969 ATGGAAGGGGCTTGTTTAAGT 57.457 42.857 0.00 0.00 36.27 2.24
284 285 4.568956 CAAATGGAAGGGGCTTGTTTAAG 58.431 43.478 0.00 0.00 36.97 1.85
285 286 3.244387 GCAAATGGAAGGGGCTTGTTTAA 60.244 43.478 0.00 0.00 0.00 1.52
286 287 2.301583 GCAAATGGAAGGGGCTTGTTTA 59.698 45.455 0.00 0.00 0.00 2.01
287 288 1.072173 GCAAATGGAAGGGGCTTGTTT 59.928 47.619 0.00 0.00 0.00 2.83
288 289 0.686789 GCAAATGGAAGGGGCTTGTT 59.313 50.000 0.00 0.00 0.00 2.83
289 290 0.178924 AGCAAATGGAAGGGGCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
290 291 0.978907 AAGCAAATGGAAGGGGCTTG 59.021 50.000 0.00 0.00 42.68 4.01
291 292 2.621556 TAAGCAAATGGAAGGGGCTT 57.378 45.000 0.00 0.00 45.78 4.35
292 293 2.621556 TTAAGCAAATGGAAGGGGCT 57.378 45.000 0.00 0.00 36.13 5.19
293 294 3.007940 AGTTTTAAGCAAATGGAAGGGGC 59.992 43.478 0.00 0.00 0.00 5.80
294 295 4.890158 AGTTTTAAGCAAATGGAAGGGG 57.110 40.909 0.00 0.00 0.00 4.79
295 296 5.337250 GGGTAGTTTTAAGCAAATGGAAGGG 60.337 44.000 0.00 0.00 0.00 3.95
296 297 5.245075 TGGGTAGTTTTAAGCAAATGGAAGG 59.755 40.000 0.00 0.00 0.00 3.46
297 298 6.156519 GTGGGTAGTTTTAAGCAAATGGAAG 58.843 40.000 0.00 0.00 0.00 3.46
298 299 5.598830 TGTGGGTAGTTTTAAGCAAATGGAA 59.401 36.000 0.00 0.00 0.00 3.53
299 300 5.141182 TGTGGGTAGTTTTAAGCAAATGGA 58.859 37.500 0.00 0.00 0.00 3.41
300 301 5.010617 ACTGTGGGTAGTTTTAAGCAAATGG 59.989 40.000 0.00 0.00 0.00 3.16
301 302 5.920273 CACTGTGGGTAGTTTTAAGCAAATG 59.080 40.000 0.00 0.00 0.00 2.32
302 303 5.010617 CCACTGTGGGTAGTTTTAAGCAAAT 59.989 40.000 19.23 0.00 32.67 2.32
303 304 4.339814 CCACTGTGGGTAGTTTTAAGCAAA 59.660 41.667 19.23 0.00 32.67 3.68
304 305 3.886505 CCACTGTGGGTAGTTTTAAGCAA 59.113 43.478 19.23 0.00 32.67 3.91
305 306 3.482436 CCACTGTGGGTAGTTTTAAGCA 58.518 45.455 19.23 0.00 32.67 3.91
318 319 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
319 320 5.670792 TTACCTATGTTACTCCCACTGTG 57.329 43.478 0.00 0.00 0.00 3.66
320 321 7.400915 TGTTATTACCTATGTTACTCCCACTGT 59.599 37.037 0.00 0.00 0.00 3.55
321 322 7.788026 TGTTATTACCTATGTTACTCCCACTG 58.212 38.462 0.00 0.00 0.00 3.66
322 323 7.983166 TGTTATTACCTATGTTACTCCCACT 57.017 36.000 0.00 0.00 0.00 4.00
323 324 8.426489 TGATGTTATTACCTATGTTACTCCCAC 58.574 37.037 0.00 0.00 0.00 4.61
324 325 8.426489 GTGATGTTATTACCTATGTTACTCCCA 58.574 37.037 0.00 0.00 0.00 4.37
325 326 8.426489 TGTGATGTTATTACCTATGTTACTCCC 58.574 37.037 0.00 0.00 0.00 4.30
326 327 9.257651 GTGTGATGTTATTACCTATGTTACTCC 57.742 37.037 0.00 0.00 0.00 3.85
327 328 9.811995 TGTGTGATGTTATTACCTATGTTACTC 57.188 33.333 0.00 0.00 0.00 2.59
356 357 9.716531 CTTGCCACATCATCTATTTTATCTAGA 57.283 33.333 0.00 0.00 0.00 2.43
357 358 9.499479 ACTTGCCACATCATCTATTTTATCTAG 57.501 33.333 0.00 0.00 0.00 2.43
359 360 9.851686 TTACTTGCCACATCATCTATTTTATCT 57.148 29.630 0.00 0.00 0.00 1.98
366 367 9.797642 TCATTTATTACTTGCCACATCATCTAT 57.202 29.630 0.00 0.00 0.00 1.98
367 368 9.625747 TTCATTTATTACTTGCCACATCATCTA 57.374 29.630 0.00 0.00 0.00 1.98
368 369 8.523915 TTCATTTATTACTTGCCACATCATCT 57.476 30.769 0.00 0.00 0.00 2.90
369 370 9.585099 TTTTCATTTATTACTTGCCACATCATC 57.415 29.630 0.00 0.00 0.00 2.92
370 371 9.941325 TTTTTCATTTATTACTTGCCACATCAT 57.059 25.926 0.00 0.00 0.00 2.45
396 397 9.315363 ACTAGCTATGTTACTATATGCCTCTTT 57.685 33.333 0.00 0.00 0.00 2.52
397 398 8.887264 ACTAGCTATGTTACTATATGCCTCTT 57.113 34.615 0.00 0.00 0.00 2.85
398 399 8.887264 AACTAGCTATGTTACTATATGCCTCT 57.113 34.615 0.00 0.00 0.00 3.69
432 433 9.875691 GCCTTGATATGTATGATGTTACTCATA 57.124 33.333 2.12 2.12 37.13 2.15
433 434 8.377799 TGCCTTGATATGTATGATGTTACTCAT 58.622 33.333 3.62 3.62 39.22 2.90
434 435 7.734942 TGCCTTGATATGTATGATGTTACTCA 58.265 34.615 0.00 0.00 0.00 3.41
435 436 8.607441 TTGCCTTGATATGTATGATGTTACTC 57.393 34.615 0.00 0.00 0.00 2.59
436 437 8.432013 TCTTGCCTTGATATGTATGATGTTACT 58.568 33.333 0.00 0.00 0.00 2.24
437 438 8.607441 TCTTGCCTTGATATGTATGATGTTAC 57.393 34.615 0.00 0.00 0.00 2.50
438 439 9.223099 CATCTTGCCTTGATATGTATGATGTTA 57.777 33.333 0.00 0.00 0.00 2.41
439 440 7.940688 TCATCTTGCCTTGATATGTATGATGTT 59.059 33.333 0.00 0.00 32.21 2.71
440 441 7.455891 TCATCTTGCCTTGATATGTATGATGT 58.544 34.615 0.00 0.00 32.21 3.06
441 442 7.606839 ACTCATCTTGCCTTGATATGTATGATG 59.393 37.037 0.00 0.00 0.00 3.07
442 443 7.687388 ACTCATCTTGCCTTGATATGTATGAT 58.313 34.615 0.00 0.00 0.00 2.45
443 444 7.015974 AGACTCATCTTGCCTTGATATGTATGA 59.984 37.037 0.00 0.00 0.00 2.15
444 445 7.160049 AGACTCATCTTGCCTTGATATGTATG 58.840 38.462 0.00 0.00 0.00 2.39
445 446 7.313740 AGACTCATCTTGCCTTGATATGTAT 57.686 36.000 0.00 0.00 0.00 2.29
446 447 6.737720 AGACTCATCTTGCCTTGATATGTA 57.262 37.500 0.00 0.00 0.00 2.29
447 448 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
448 449 7.307870 GCTTTAGACTCATCTTGCCTTGATATG 60.308 40.741 0.00 0.00 36.29 1.78
449 450 6.709846 GCTTTAGACTCATCTTGCCTTGATAT 59.290 38.462 0.00 0.00 36.29 1.63
450 451 6.051717 GCTTTAGACTCATCTTGCCTTGATA 58.948 40.000 0.00 0.00 36.29 2.15
451 452 4.880696 GCTTTAGACTCATCTTGCCTTGAT 59.119 41.667 0.00 0.00 36.29 2.57
452 453 4.256920 GCTTTAGACTCATCTTGCCTTGA 58.743 43.478 0.00 0.00 36.29 3.02
453 454 4.005650 TGCTTTAGACTCATCTTGCCTTG 58.994 43.478 0.00 0.00 36.29 3.61
454 455 4.292186 TGCTTTAGACTCATCTTGCCTT 57.708 40.909 0.00 0.00 36.29 4.35
455 456 3.988976 TGCTTTAGACTCATCTTGCCT 57.011 42.857 0.00 0.00 36.29 4.75
456 457 6.874288 ATTATGCTTTAGACTCATCTTGCC 57.126 37.500 0.00 0.00 36.29 4.52
496 497 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
497 498 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
498 499 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
499 500 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
500 501 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
501 502 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
502 503 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
503 504 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
504 505 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
505 506 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
506 507 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
507 508 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
508 509 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
509 510 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
510 511 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
511 512 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
512 513 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
513 514 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
514 515 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
515 516 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
516 517 7.393796 CACTATGTTACTACCTCTATAGTGGGG 59.606 44.444 21.82 16.35 41.72 4.96
517 518 7.943447 ACACTATGTTACTACCTCTATAGTGGG 59.057 40.741 21.82 16.23 46.00 4.61
518 519 8.921353 ACACTATGTTACTACCTCTATAGTGG 57.079 38.462 17.49 17.49 46.00 4.00
525 526 9.917887 ATGTTACTACACTATGTTACTACCTCT 57.082 33.333 0.00 0.00 37.03 3.69
526 527 9.947669 CATGTTACTACACTATGTTACTACCTC 57.052 37.037 0.00 0.00 37.03 3.85
527 528 8.910944 CCATGTTACTACACTATGTTACTACCT 58.089 37.037 0.00 0.00 37.03 3.08
528 529 8.139989 CCCATGTTACTACACTATGTTACTACC 58.860 40.741 0.00 0.00 37.03 3.18
529 530 7.650903 GCCCATGTTACTACACTATGTTACTAC 59.349 40.741 0.00 0.00 37.03 2.73
530 531 7.342541 TGCCCATGTTACTACACTATGTTACTA 59.657 37.037 0.00 0.00 37.03 1.82
531 532 6.155565 TGCCCATGTTACTACACTATGTTACT 59.844 38.462 0.00 0.00 37.03 2.24
532 533 6.342906 TGCCCATGTTACTACACTATGTTAC 58.657 40.000 0.00 0.00 37.03 2.50
533 534 6.547930 TGCCCATGTTACTACACTATGTTA 57.452 37.500 0.00 0.00 37.03 2.41
534 535 5.429681 TGCCCATGTTACTACACTATGTT 57.570 39.130 0.00 0.00 37.03 2.71
535 536 5.368145 CATGCCCATGTTACTACACTATGT 58.632 41.667 0.13 0.00 37.03 2.29
536 537 5.929697 CATGCCCATGTTACTACACTATG 57.070 43.478 0.13 0.00 37.03 2.23
558 559 6.780457 TGGGTAGTAACATAGAGTGGTAAC 57.220 41.667 0.00 0.00 30.19 2.50
559 560 7.400915 ACAATGGGTAGTAACATAGAGTGGTAA 59.599 37.037 0.00 0.00 30.19 2.85
560 561 6.899075 ACAATGGGTAGTAACATAGAGTGGTA 59.101 38.462 0.00 0.00 0.00 3.25
561 562 5.724854 ACAATGGGTAGTAACATAGAGTGGT 59.275 40.000 0.00 0.00 0.00 4.16
562 563 6.049149 CACAATGGGTAGTAACATAGAGTGG 58.951 44.000 0.00 0.00 0.00 4.00
563 564 6.049149 CCACAATGGGTAGTAACATAGAGTG 58.951 44.000 0.00 0.00 32.67 3.51
564 565 5.396436 GCCACAATGGGTAGTAACATAGAGT 60.396 44.000 0.00 0.00 38.19 3.24
565 566 5.057149 GCCACAATGGGTAGTAACATAGAG 58.943 45.833 0.00 0.00 38.19 2.43
566 567 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
578 579 2.092968 TGCTTAGACTAGCCACAATGGG 60.093 50.000 0.00 0.00 40.49 4.00
579 580 3.266510 TGCTTAGACTAGCCACAATGG 57.733 47.619 0.00 0.00 40.49 3.16
580 581 4.256920 AGTTGCTTAGACTAGCCACAATG 58.743 43.478 0.00 0.00 38.79 2.82
581 582 4.559862 AGTTGCTTAGACTAGCCACAAT 57.440 40.909 0.00 0.00 38.79 2.71
582 583 5.011738 ACTTAGTTGCTTAGACTAGCCACAA 59.988 40.000 0.00 0.00 38.79 3.33
583 584 4.527038 ACTTAGTTGCTTAGACTAGCCACA 59.473 41.667 0.00 0.00 38.79 4.17
584 585 5.074584 ACTTAGTTGCTTAGACTAGCCAC 57.925 43.478 0.00 0.00 40.49 5.01
585 586 5.740290 AACTTAGTTGCTTAGACTAGCCA 57.260 39.130 0.00 0.00 40.49 4.75
586 587 5.351740 CCAAACTTAGTTGCTTAGACTAGCC 59.648 44.000 0.00 0.00 40.49 3.93
587 588 5.932883 ACCAAACTTAGTTGCTTAGACTAGC 59.067 40.000 0.00 0.00 41.59 3.42
588 589 7.152645 TCACCAAACTTAGTTGCTTAGACTAG 58.847 38.462 0.00 0.00 31.74 2.57
589 590 7.058023 TCACCAAACTTAGTTGCTTAGACTA 57.942 36.000 0.00 0.00 0.00 2.59
590 591 5.925509 TCACCAAACTTAGTTGCTTAGACT 58.074 37.500 0.00 0.00 0.00 3.24
591 592 6.613755 TTCACCAAACTTAGTTGCTTAGAC 57.386 37.500 0.00 0.00 0.00 2.59
592 593 7.500892 TGATTTCACCAAACTTAGTTGCTTAGA 59.499 33.333 0.00 0.00 0.00 2.10
593 594 7.648142 TGATTTCACCAAACTTAGTTGCTTAG 58.352 34.615 0.00 0.00 0.00 2.18
594 595 7.575414 TGATTTCACCAAACTTAGTTGCTTA 57.425 32.000 0.00 0.00 0.00 3.09
595 596 6.463995 TGATTTCACCAAACTTAGTTGCTT 57.536 33.333 0.00 0.00 0.00 3.91
596 597 6.655078 ATGATTTCACCAAACTTAGTTGCT 57.345 33.333 0.00 0.00 0.00 3.91
597 598 8.986477 ATAATGATTTCACCAAACTTAGTTGC 57.014 30.769 0.00 0.00 0.00 4.17
609 610 7.010738 CAGCAATGGACAAATAATGATTTCACC 59.989 37.037 0.00 0.00 32.73 4.02
640 641 6.363357 GGTGTAAGTTGCAAATAAAGAAGCTG 59.637 38.462 0.00 0.00 0.00 4.24
650 651 5.105554 TCACTTGTTGGTGTAAGTTGCAAAT 60.106 36.000 0.00 0.00 35.08 2.32
657 658 4.080526 AGTCCTTCACTTGTTGGTGTAAGT 60.081 41.667 0.00 0.00 37.61 2.24
658 659 4.451900 AGTCCTTCACTTGTTGGTGTAAG 58.548 43.478 0.00 0.00 38.28 2.34
660 661 4.497291 AAGTCCTTCACTTGTTGGTGTA 57.503 40.909 0.00 0.00 44.28 2.90
661 662 3.366052 AAGTCCTTCACTTGTTGGTGT 57.634 42.857 0.00 0.00 44.28 4.16
743 744 1.887198 AGTCGAGACATTGACGTCCTT 59.113 47.619 14.12 0.00 43.64 3.36
744 745 1.535833 AGTCGAGACATTGACGTCCT 58.464 50.000 14.12 1.48 43.64 3.85
749 750 7.968956 TCTTCATTACTAAGTCGAGACATTGAC 59.031 37.037 5.99 0.00 39.80 3.18
752 753 8.282455 TCTCTTCATTACTAAGTCGAGACATT 57.718 34.615 5.99 0.56 0.00 2.71
770 771 9.011095 CCGTTCAATAGGTATATACTCTCTTCA 57.989 37.037 12.54 0.00 0.00 3.02
794 795 4.891277 AACGTGTTAATACGAACTTCCG 57.109 40.909 28.21 2.70 46.46 4.30
828 829 9.685828 AATATACTGCATAACGTGTTTGTTTTT 57.314 25.926 0.00 0.00 33.32 1.94
829 830 9.685828 AAATATACTGCATAACGTGTTTGTTTT 57.314 25.926 0.00 0.00 33.32 2.43
830 831 9.123709 CAAATATACTGCATAACGTGTTTGTTT 57.876 29.630 0.00 0.00 33.32 2.83
831 832 8.293867 ACAAATATACTGCATAACGTGTTTGTT 58.706 29.630 0.00 0.00 33.73 2.83
832 833 7.812648 ACAAATATACTGCATAACGTGTTTGT 58.187 30.769 0.00 0.00 32.94 2.83
833 834 8.667987 AACAAATATACTGCATAACGTGTTTG 57.332 30.769 0.00 0.00 0.00 2.93
834 835 9.685828 AAAACAAATATACTGCATAACGTGTTT 57.314 25.926 0.00 0.00 35.29 2.83
835 836 9.337091 GAAAACAAATATACTGCATAACGTGTT 57.663 29.630 0.00 0.00 0.00 3.32
836 837 8.508062 TGAAAACAAATATACTGCATAACGTGT 58.492 29.630 0.00 0.00 0.00 4.49
837 838 8.785101 GTGAAAACAAATATACTGCATAACGTG 58.215 33.333 0.00 0.00 0.00 4.49
838 839 7.690637 CGTGAAAACAAATATACTGCATAACGT 59.309 33.333 0.00 0.00 0.00 3.99
839 840 7.900864 TCGTGAAAACAAATATACTGCATAACG 59.099 33.333 0.00 0.00 0.00 3.18
840 841 9.716507 ATCGTGAAAACAAATATACTGCATAAC 57.283 29.630 0.00 0.00 0.00 1.89
841 842 9.929722 GATCGTGAAAACAAATATACTGCATAA 57.070 29.630 0.00 0.00 0.00 1.90
842 843 9.103861 TGATCGTGAAAACAAATATACTGCATA 57.896 29.630 0.00 0.00 0.00 3.14
843 844 7.984391 TGATCGTGAAAACAAATATACTGCAT 58.016 30.769 0.00 0.00 0.00 3.96
844 845 7.371126 TGATCGTGAAAACAAATATACTGCA 57.629 32.000 0.00 0.00 0.00 4.41
845 846 6.907212 CCTGATCGTGAAAACAAATATACTGC 59.093 38.462 0.00 0.00 0.00 4.40
870 871 0.960364 TCAACGGATGCTTGGGCTTC 60.960 55.000 0.00 0.00 40.51 3.86
924 955 1.681780 CCGCATACATCCAACCCAACT 60.682 52.381 0.00 0.00 0.00 3.16
943 974 7.415229 GCTAACAACCAACTTTATAGCATACC 58.585 38.462 0.00 0.00 35.53 2.73
959 990 1.541588 CTGGCTTTGAGGCTAACAACC 59.458 52.381 3.15 0.00 41.96 3.77
982 1014 2.127003 GGCGCACCGTGTTTTAGC 60.127 61.111 10.83 0.00 0.00 3.09
992 1024 0.101219 GAAAATCTCCATGGCGCACC 59.899 55.000 10.83 0.00 0.00 5.01
1065 1117 3.008375 TCTTGGACTTGTCATGGGAAGAG 59.992 47.826 10.53 0.35 0.00 2.85
1072 1124 3.743521 TCTTGGTCTTGGACTTGTCATG 58.256 45.455 3.08 0.00 32.47 3.07
1074 1126 3.454447 TCTTCTTGGTCTTGGACTTGTCA 59.546 43.478 3.08 0.00 32.47 3.58
1080 1132 3.142174 CAACCTCTTCTTGGTCTTGGAC 58.858 50.000 0.00 0.00 36.69 4.02
1081 1133 2.487265 GCAACCTCTTCTTGGTCTTGGA 60.487 50.000 0.00 0.00 36.69 3.53
1107 1159 2.590092 GGAAGGGTCCATGGTCCG 59.410 66.667 20.04 0.00 44.26 4.79
1449 1501 2.524394 GCCATCTCCTCGGCCCTA 60.524 66.667 0.00 0.00 42.82 3.53
1512 1567 2.147150 GGCAACTTCTCACTGAGGTTC 58.853 52.381 6.20 0.00 42.07 3.62
1521 1576 1.597854 CAGCACCGGCAACTTCTCA 60.598 57.895 0.00 0.00 44.61 3.27
1716 1771 4.776322 CGCTGGATCCGGCCACAA 62.776 66.667 34.81 2.58 44.93 3.33
1739 1794 1.466866 GGTCGTCGATGATGTTGTCGA 60.467 52.381 11.16 0.00 43.79 4.20
1740 1795 0.914551 GGTCGTCGATGATGTTGTCG 59.085 55.000 11.16 0.00 39.11 4.35
1741 1796 0.914551 CGGTCGTCGATGATGTTGTC 59.085 55.000 11.16 0.00 42.43 3.18
1742 1797 1.076533 GCGGTCGTCGATGATGTTGT 61.077 55.000 11.16 0.00 42.43 3.32
1743 1798 1.075979 TGCGGTCGTCGATGATGTTG 61.076 55.000 11.16 2.61 42.43 3.33
1744 1799 0.802222 CTGCGGTCGTCGATGATGTT 60.802 55.000 11.16 0.00 42.43 2.71
1745 1800 1.226688 CTGCGGTCGTCGATGATGT 60.227 57.895 11.16 0.00 42.43 3.06
1746 1801 1.946156 CCTGCGGTCGTCGATGATG 60.946 63.158 11.16 7.96 42.43 3.07
1747 1802 2.413351 CCTGCGGTCGTCGATGAT 59.587 61.111 11.16 0.00 42.43 2.45
1748 1803 3.822192 CCCTGCGGTCGTCGATGA 61.822 66.667 2.39 2.39 42.43 2.92
1791 1864 2.046988 TCCTCGTCGTCGGTGCTA 60.047 61.111 1.55 0.00 37.69 3.49
1883 1956 3.609853 GGCATACTCACAAAGATGACCA 58.390 45.455 0.00 0.00 0.00 4.02
1901 1974 5.200483 AGAAAAGGAATGGAATAATCGGCA 58.800 37.500 0.00 0.00 0.00 5.69
1902 1975 5.532779 AGAGAAAAGGAATGGAATAATCGGC 59.467 40.000 0.00 0.00 0.00 5.54
1903 1976 6.767902 TGAGAGAAAAGGAATGGAATAATCGG 59.232 38.462 0.00 0.00 0.00 4.18
1904 1977 7.792374 TGAGAGAAAAGGAATGGAATAATCG 57.208 36.000 0.00 0.00 0.00 3.34
1921 1994 8.589338 GCATAGGAGTATAGGAAATTGAGAGAA 58.411 37.037 0.00 0.00 0.00 2.87
1927 2000 7.397221 TCATGGCATAGGAGTATAGGAAATTG 58.603 38.462 0.00 0.00 0.00 2.32
1953 2033 4.520492 CCTATTATTCCTTGTGTCATGGGC 59.480 45.833 0.00 0.00 30.78 5.36
1954 2034 4.520492 GCCTATTATTCCTTGTGTCATGGG 59.480 45.833 0.00 0.00 30.78 4.00
1955 2035 4.214119 CGCCTATTATTCCTTGTGTCATGG 59.786 45.833 0.00 0.00 0.00 3.66
1956 2036 4.816385 ACGCCTATTATTCCTTGTGTCATG 59.184 41.667 0.00 0.00 0.00 3.07
1957 2037 4.816385 CACGCCTATTATTCCTTGTGTCAT 59.184 41.667 0.00 0.00 0.00 3.06
1958 2038 4.188462 CACGCCTATTATTCCTTGTGTCA 58.812 43.478 0.00 0.00 0.00 3.58
1959 2039 3.560068 CCACGCCTATTATTCCTTGTGTC 59.440 47.826 0.00 0.00 0.00 3.67
1960 2040 3.054655 ACCACGCCTATTATTCCTTGTGT 60.055 43.478 0.00 0.00 0.00 3.72
1961 2041 3.541632 ACCACGCCTATTATTCCTTGTG 58.458 45.455 0.00 0.00 0.00 3.33
1964 2044 6.435292 AGATAACCACGCCTATTATTCCTT 57.565 37.500 0.00 0.00 0.00 3.36
1972 2052 5.832060 ACTGTAGTTAGATAACCACGCCTAT 59.168 40.000 0.00 0.00 36.88 2.57
2015 2095 9.320352 GGCCACTTTTTAGATTTTAGAAACAAA 57.680 29.630 0.00 0.00 0.00 2.83
2016 2096 7.650104 CGGCCACTTTTTAGATTTTAGAAACAA 59.350 33.333 2.24 0.00 0.00 2.83
2017 2097 7.142680 CGGCCACTTTTTAGATTTTAGAAACA 58.857 34.615 2.24 0.00 0.00 2.83
2018 2098 6.089016 GCGGCCACTTTTTAGATTTTAGAAAC 59.911 38.462 2.24 0.00 0.00 2.78
2019 2099 6.153756 GCGGCCACTTTTTAGATTTTAGAAA 58.846 36.000 2.24 0.00 0.00 2.52
2020 2100 5.618195 CGCGGCCACTTTTTAGATTTTAGAA 60.618 40.000 2.24 0.00 0.00 2.10
2021 2101 4.142773 CGCGGCCACTTTTTAGATTTTAGA 60.143 41.667 2.24 0.00 0.00 2.10
2282 3767 3.927555 CTTGACCAAAGGCGACCTA 57.072 52.632 0.00 0.00 31.13 3.08
2313 3798 2.915659 TGTTCGACCAGAGGCGGT 60.916 61.111 0.00 0.00 43.91 5.68
2319 3804 0.959553 GTCCTGAGTGTTCGACCAGA 59.040 55.000 0.00 0.00 0.00 3.86
2375 3861 2.358615 CAGCACAACAGCCCGCTA 60.359 61.111 0.00 0.00 32.29 4.26
2445 3931 4.339814 GTGTACCCCAAATTCAAGTTGACA 59.660 41.667 4.68 0.00 0.00 3.58
2457 3943 0.396060 GGTGTACGGTGTACCCCAAA 59.604 55.000 4.09 0.00 0.00 3.28
2572 4058 6.929049 TCAATCACAGAAACACGACTATTTCT 59.071 34.615 0.00 0.00 44.19 2.52
2585 4071 4.022935 GCCACTGTCAATCAATCACAGAAA 60.023 41.667 5.34 0.00 40.07 2.52
2605 4091 0.541530 AGTCTCAGCACAGAGAGCCA 60.542 55.000 4.08 0.00 44.76 4.75
2637 4123 3.724478 TCTCACCTCTCTCTCTCTCTCT 58.276 50.000 0.00 0.00 0.00 3.10
2638 4124 4.384056 CATCTCACCTCTCTCTCTCTCTC 58.616 52.174 0.00 0.00 0.00 3.20
2639 4125 3.137176 CCATCTCACCTCTCTCTCTCTCT 59.863 52.174 0.00 0.00 0.00 3.10
2640 4126 3.480470 CCATCTCACCTCTCTCTCTCTC 58.520 54.545 0.00 0.00 0.00 3.20
2641 4127 2.175499 CCCATCTCACCTCTCTCTCTCT 59.825 54.545 0.00 0.00 0.00 3.10
2642 4128 2.174639 TCCCATCTCACCTCTCTCTCTC 59.825 54.545 0.00 0.00 0.00 3.20
2643 4129 2.213310 TCCCATCTCACCTCTCTCTCT 58.787 52.381 0.00 0.00 0.00 3.10
2644 4130 2.746279 TCCCATCTCACCTCTCTCTC 57.254 55.000 0.00 0.00 0.00 3.20
2645 4131 2.359143 CCTTCCCATCTCACCTCTCTCT 60.359 54.545 0.00 0.00 0.00 3.10
2646 4132 2.038659 CCTTCCCATCTCACCTCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
2647 4133 1.364328 ACCTTCCCATCTCACCTCTCT 59.636 52.381 0.00 0.00 0.00 3.10
2648 4134 1.872773 ACCTTCCCATCTCACCTCTC 58.127 55.000 0.00 0.00 0.00 3.20
2649 4135 1.912043 CAACCTTCCCATCTCACCTCT 59.088 52.381 0.00 0.00 0.00 3.69
2650 4136 1.065126 CCAACCTTCCCATCTCACCTC 60.065 57.143 0.00 0.00 0.00 3.85
2651 4137 0.995024 CCAACCTTCCCATCTCACCT 59.005 55.000 0.00 0.00 0.00 4.00
2652 4138 0.698818 ACCAACCTTCCCATCTCACC 59.301 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.