AutoCloner

Multiple sequence alignment - TraesCS5A01G458800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G458800	chr5A	100.000	3143	0	0	1	3143	639097431	639100573	0.000000e+00	5805.0
1	TraesCS5A01G458800	chr5A	87.733	1720	184	9	587	2283	638812856	638811141	0.000000e+00	1982.0
2	TraesCS5A01G458800	chr5A	78.926	1229	227	20	1075	2282	639087094	639088311	0.000000e+00	806.0
3	TraesCS5A01G458800	chr5A	87.154	397	51	0	995	1391	638806889	638806493	4.780000e-123	451.0
4	TraesCS5A01G458800	chr5A	89.600	125	12	1	166	289	638763467	638763343	1.170000e-34	158.0
5	TraesCS5A01G458800	chr5A	88.119	101	7	3	2370	2466	638811117	638811018	7.120000e-22	115.0
6	TraesCS5A01G458800	chr5B	92.017	2518	126	26	1	2467	641804346	641806839	0.000000e+00	3467.0
7	TraesCS5A01G458800	chr5B	87.565	1922	196	18	589	2467	641428699	641426778	0.000000e+00	2185.0
8	TraesCS5A01G458800	chr5B	87.326	1649	184	15	588	2222	641413385	641411748	0.000000e+00	1864.0
9	TraesCS5A01G458800	chr5B	77.748	1137	199	31	1014	2114	641401673	641400555	0.000000e+00	649.0
10	TraesCS5A01G458800	chr5D	93.288	2354	92	27	161	2467	510903711	510906045	0.000000e+00	3411.0
11	TraesCS5A01G458800	chr5D	86.619	1674	184	14	589	2233	510600051	510598389	0.000000e+00	1814.0
12	TraesCS5A01G458800	chr5D	85.483	1729	192	31	589	2292	510647916	510646222	0.000000e+00	1748.0
13	TraesCS5A01G458800	chr5D	89.721	681	62	5	2467	3141	556533420	556532742	0.000000e+00	863.0
14	TraesCS5A01G458800	chr5D	76.395	1165	195	45	1014	2114	510492432	510491284	3.540000e-154	555.0
15	TraesCS5A01G458800	chr5D	83.212	411	39	12	607	989	510504173	510503765	1.790000e-92	350.0
16	TraesCS5A01G458800	chr5D	91.270	126	10	1	165	289	510626596	510626471	1.500000e-38	171.0
17	TraesCS5A01G458800	chr5D	90.476	126	11	1	165	289	510389318	510389193	6.970000e-37	165.0
18	TraesCS5A01G458800	chr5D	90.400	125	11	1	166	289	510492725	510492601	2.510000e-36	163.0
19	TraesCS5A01G458800	chr5D	85.938	64	3	2	2343	2400	510632529	510632466	2.620000e-06	63.9
20	TraesCS5A01G458800	chr6D	95.280	678	30	2	2467	3143	273913889	273913213	0.000000e+00	1074.0
21	TraesCS5A01G458800	chr6B	90.735	680	59	3	2467	3143	72391749	72392427	0.000000e+00	904.0
22	TraesCS5A01G458800	chr6B	87.116	683	82	5	2467	3143	88495771	88495089	0.000000e+00	769.0
23	TraesCS5A01G458800	chr2B	87.977	682	74	5	2467	3143	280485828	280486506	0.000000e+00	798.0
24	TraesCS5A01G458800	chr2D	86.823	683	80	9	2467	3143	480203514	480202836	0.000000e+00	754.0
25	TraesCS5A01G458800	chr4D	86.676	683	83	6	2467	3143	448534043	448533363	0.000000e+00	750.0
26	TraesCS5A01G458800	chr4D	86.589	686	81	7	2467	3143	390838557	390839240	0.000000e+00	747.0
27	TraesCS5A01G458800	chr4A	85.962	691	82	13	2460	3143	176802498	176801816	0.000000e+00	725.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G458800	chr5A	639097431	639100573	3142	False	5805.0	5805	100.0000	1	3143	1	chr5A.!!$F2	3142
1	TraesCS5A01G458800	chr5A	638811018	638812856	1838	True	1048.5	1982	87.9260	587	2466	2	chr5A.!!$R3	1879
2	TraesCS5A01G458800	chr5A	639087094	639088311	1217	False	806.0	806	78.9260	1075	2282	1	chr5A.!!$F1	1207
3	TraesCS5A01G458800	chr5B	641804346	641806839	2493	False	3467.0	3467	92.0170	1	2467	1	chr5B.!!$F1	2466
4	TraesCS5A01G458800	chr5B	641426778	641428699	1921	True	2185.0	2185	87.5650	589	2467	1	chr5B.!!$R3	1878
5	TraesCS5A01G458800	chr5B	641411748	641413385	1637	True	1864.0	1864	87.3260	588	2222	1	chr5B.!!$R2	1634
6	TraesCS5A01G458800	chr5B	641400555	641401673	1118	True	649.0	649	77.7480	1014	2114	1	chr5B.!!$R1	1100
7	TraesCS5A01G458800	chr5D	510903711	510906045	2334	False	3411.0	3411	93.2880	161	2467	1	chr5D.!!$F1	2306
8	TraesCS5A01G458800	chr5D	510598389	510600051	1662	True	1814.0	1814	86.6190	589	2233	1	chr5D.!!$R3	1644
9	TraesCS5A01G458800	chr5D	510646222	510647916	1694	True	1748.0	1748	85.4830	589	2292	1	chr5D.!!$R6	1703
10	TraesCS5A01G458800	chr5D	556532742	556533420	678	True	863.0	863	89.7210	2467	3141	1	chr5D.!!$R7	674
11	TraesCS5A01G458800	chr5D	510491284	510492725	1441	True	359.0	555	83.3975	166	2114	2	chr5D.!!$R8	1948
12	TraesCS5A01G458800	chr6D	273913213	273913889	676	True	1074.0	1074	95.2800	2467	3143	1	chr6D.!!$R1	676
13	TraesCS5A01G458800	chr6B	72391749	72392427	678	False	904.0	904	90.7350	2467	3143	1	chr6B.!!$F1	676
14	TraesCS5A01G458800	chr6B	88495089	88495771	682	True	769.0	769	87.1160	2467	3143	1	chr6B.!!$R1	676
15	TraesCS5A01G458800	chr2B	280485828	280486506	678	False	798.0	798	87.9770	2467	3143	1	chr2B.!!$F1	676
16	TraesCS5A01G458800	chr2D	480202836	480203514	678	True	754.0	754	86.8230	2467	3143	1	chr2D.!!$R1	676
17	TraesCS5A01G458800	chr4D	448533363	448534043	680	True	750.0	750	86.6760	2467	3143	1	chr4D.!!$R1	676
18	TraesCS5A01G458800	chr4D	390838557	390839240	683	False	747.0	747	86.5890	2467	3143	1	chr4D.!!$F1	676
19	TraesCS5A01G458800	chr4A	176801816	176802498	682	True	725.0	725	85.9620	2460	3143	1	chr4A.!!$R1	683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
585	612	1.771255	ACAGAGAAGTATCCCCATGCC	59.229	52.381	0.0	0.0	0.00	4.4	F
1145	1232	1.457346	CGCAAGAAGCTCCCAAGAAT	58.543	50.000	0.0	0.0	42.61	2.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2115	2279	0.795085	CTTGAGCTCCTTGAAGCACG	59.205	55.000	12.15	0.0	45.0	5.34	R
2566	2771	1.477923	GGTGGGTTTTCTGGTAGTGCA	60.478	52.381	0.00	0.0	0.0	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	9.143631	GTTCCCTTTTTATCAGATCACATTTTG	57.856	33.333	0.00	0.00	0.00	2.44
41	42	6.713762	TCAGATCACATTTTGTTTCAAGGT	57.286	33.333	0.00	0.00	0.00	3.50
50	51	8.649841	CACATTTTGTTTCAAGGTGCATTATAG	58.350	33.333	0.00	0.00	29.97	1.31
75	76	8.706035	AGTAACACGTGTATTATGTTTTCACTC	58.294	33.333	23.69	0.00	37.68	3.51
79	80	6.519761	CACGTGTATTATGTTTTCACTCTTGC	59.480	38.462	7.58	0.00	0.00	4.01
86	87	2.945008	TGTTTTCACTCTTGCTGACCTG	59.055	45.455	0.00	0.00	0.00	4.00
102	103	3.820467	TGACCTGTTGTGAAATGGATGAC	59.180	43.478	0.00	0.00	0.00	3.06
108	109	2.709213	TGTGAAATGGATGACGATGCA	58.291	42.857	0.00	0.00	33.95	3.96
261	262	5.722021	AAGGGCCACTTGTTTACTAATTG	57.278	39.130	6.18	0.00	38.21	2.32
306	310	4.853924	AAATTGTTAGCACTTGTCAGGG	57.146	40.909	0.00	0.00	0.00	4.45
340	367	3.274288	CCCTGGCTTATCTCACAAGTTC	58.726	50.000	0.00	0.00	0.00	3.01
358	385	2.800544	GTTCGCACTTGTCTCAGCTTTA	59.199	45.455	0.00	0.00	0.00	1.85
378	405	5.484173	TTACACGGTGTCTAATAGGTACG	57.516	43.478	18.43	0.00	0.00	3.67
386	413	7.067494	ACGGTGTCTAATAGGTACGTAAGATTT	59.933	37.037	0.00	0.00	43.62	2.17
387	414	8.559536	CGGTGTCTAATAGGTACGTAAGATTTA	58.440	37.037	0.00	0.00	43.62	1.40
411	438	4.543689	AGATCCTGAGGTACATTCCGTTA	58.456	43.478	0.00	0.00	0.00	3.18
420	447	7.396418	TGAGGTACATTCCGTTACCTTTTTAT	58.604	34.615	1.92	0.00	42.48	1.40
445	472	6.362016	TCATATCACATTTTGTTTCAACGTGC	59.638	34.615	0.00	0.00	0.00	5.34
453	480	3.617540	TGTTTCAACGTGCATTGTAGG	57.382	42.857	0.00	0.00	0.00	3.18
458	485	3.599412	ACGTGCATTGTAGGAACGT	57.401	47.368	1.38	0.00	42.20	3.99
508	535	2.824936	TGTTGTGAAATGGATGGCGAAT	59.175	40.909	0.00	0.00	0.00	3.34
585	612	1.771255	ACAGAGAAGTATCCCCATGCC	59.229	52.381	0.00	0.00	0.00	4.40
772	834	6.869315	TTTCTGTTCATTTGACATCCGTAA	57.131	33.333	0.00	0.00	0.00	3.18
776	838	6.878923	TCTGTTCATTTGACATCCGTAATTCT	59.121	34.615	0.00	0.00	0.00	2.40
778	840	7.970384	TGTTCATTTGACATCCGTAATTCTAC	58.030	34.615	0.00	0.00	0.00	2.59
779	841	7.604545	TGTTCATTTGACATCCGTAATTCTACA	59.395	33.333	0.00	0.00	0.00	2.74
780	842	8.612619	GTTCATTTGACATCCGTAATTCTACAT	58.387	33.333	0.00	0.00	0.00	2.29
781	843	8.365399	TCATTTGACATCCGTAATTCTACATC	57.635	34.615	0.00	0.00	0.00	3.06
782	844	7.441157	TCATTTGACATCCGTAATTCTACATCC	59.559	37.037	0.00	0.00	0.00	3.51
783	845	5.862678	TGACATCCGTAATTCTACATCCA	57.137	39.130	0.00	0.00	0.00	3.41
784	846	6.419484	TGACATCCGTAATTCTACATCCAT	57.581	37.500	0.00	0.00	0.00	3.41
785	847	7.533289	TGACATCCGTAATTCTACATCCATA	57.467	36.000	0.00	0.00	0.00	2.74
787	849	8.593679	TGACATCCGTAATTCTACATCCATATT	58.406	33.333	0.00	0.00	0.00	1.28
788	850	9.436957	GACATCCGTAATTCTACATCCATATTT	57.563	33.333	0.00	0.00	0.00	1.40
789	851	9.436957	ACATCCGTAATTCTACATCCATATTTC	57.563	33.333	0.00	0.00	0.00	2.17
790	852	8.595533	CATCCGTAATTCTACATCCATATTTCG	58.404	37.037	0.00	0.00	0.00	3.46
791	853	7.888424	TCCGTAATTCTACATCCATATTTCGA	58.112	34.615	0.00	0.00	0.00	3.71
793	855	7.201444	CCGTAATTCTACATCCATATTTCGAGC	60.201	40.741	0.00	0.00	0.00	5.03
1006	1093	3.616721	CTCGGTAGGGGATGGCCG	61.617	72.222	0.00	0.00	44.95	6.13
1118	1205	2.421107	GGCTTGCCTTCTCATCTGATCA	60.421	50.000	4.11	0.00	0.00	2.92
1145	1232	1.457346	CGCAAGAAGCTCCCAAGAAT	58.543	50.000	0.00	0.00	42.61	2.40
1156	1243	1.708551	TCCCAAGAATTCCCTTCGGTT	59.291	47.619	0.65	0.00	38.98	4.44
1230	1338	3.649981	CCTCAGGTGACAGGGATATTGAT	59.350	47.826	0.00	0.00	0.00	2.57
1310	1418	5.730568	GCAATGGCCTACTTCTTTGTTATCG	60.731	44.000	3.32	0.00	0.00	2.92
1763	1908	1.598130	GCTGTCTTGGCCAGTCGTT	60.598	57.895	5.11	0.00	32.41	3.85
2115	2279	1.260544	ATGGCAAGTTTCCAGCTTCC	58.739	50.000	0.00	0.00	36.98	3.46
2142	2306	4.356405	TCAAGGAGCTCAAGACAAATGA	57.644	40.909	17.19	4.69	0.00	2.57
2201	2371	6.097554	AGTTATCTTCTGTGCACTAGCTGTAT	59.902	38.462	19.41	5.76	42.74	2.29
2270	2449	9.855021	GTGTTATGTTAATCTAATTGGCACTTT	57.145	29.630	0.00	0.00	0.00	2.66
2283	2462	2.297033	TGGCACTTTTCATTTCTCCTGC	59.703	45.455	0.00	0.00	0.00	4.85
2292	2486	2.639347	TCATTTCTCCTGCCAACTCTGA	59.361	45.455	0.00	0.00	0.00	3.27
2317	2511	6.717084	ACCTAATTTAGAAAAACTGCAGAGCT	59.283	34.615	23.35	11.64	0.00	4.09
2566	2771	2.517998	AAGAGGTAGAGCGAGTTCCT	57.482	50.000	0.00	0.00	0.00	3.36
2630	2835	1.302993	GCTGTGGGGCGAAAACCTA	60.303	57.895	0.00	0.00	0.00	3.08
2681	2887	7.817418	TTACAAGCTCAAAAGACCAAACTAT	57.183	32.000	0.00	0.00	0.00	2.12
2705	2912	4.523943	AGCAGACATAGAAACATTTGCCAA	59.476	37.500	0.00	0.00	0.00	4.52
2736	2947	2.145397	TCATCTCCAGGTAGAAGCGT	57.855	50.000	0.00	0.00	0.00	5.07
2818	3034	2.332654	GGATCGTTTGCTTGGCGGT	61.333	57.895	0.00	0.00	0.00	5.68
2944	3160	5.641209	GCAGAAAAGAGCATAGAGAGAACAA	59.359	40.000	0.00	0.00	0.00	2.83
2979	3198	7.710896	AGGAGTCTTGATTTGTTTCTTTTCAG	58.289	34.615	0.00	0.00	0.00	3.02
3057	3276	5.361571	ACCGTGTAAAAAGTTTTCTTCCCAT	59.638	36.000	0.32	0.00	39.48	4.00
3102	3321	5.048991	ACGAAGTATTGCCAGTAGTTTTTGG	60.049	40.000	0.00	0.00	41.94	3.28
3112	3332	4.444164	CCAGTAGTTTTTGGGGCATTTGTT	60.444	41.667	0.00	0.00	0.00	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	6.959311	CGTGTTACTATAATGCACCTTGAAAC	59.041	38.462	0.00	0.00	0.00	2.78
41	42	9.752961	ACATAATACACGTGTTACTATAATGCA	57.247	29.630	28.55	3.91	0.00	3.96
50	51	8.706035	AGAGTGAAAACATAATACACGTGTTAC	58.294	33.333	28.55	4.40	35.19	2.50
66	67	2.945668	ACAGGTCAGCAAGAGTGAAAAC	59.054	45.455	0.00	0.00	0.00	2.43
73	74	2.245159	TCACAACAGGTCAGCAAGAG	57.755	50.000	0.00	0.00	0.00	2.85
75	76	3.551454	CCATTTCACAACAGGTCAGCAAG	60.551	47.826	0.00	0.00	0.00	4.01
79	80	4.074259	TCATCCATTTCACAACAGGTCAG	58.926	43.478	0.00	0.00	0.00	3.51
86	87	3.119884	TGCATCGTCATCCATTTCACAAC	60.120	43.478	0.00	0.00	0.00	3.32
102	103	7.760131	ATAAGTTTTTCCAATGATTGCATCG	57.240	32.000	0.00	0.00	32.35	3.84
138	139	7.447374	ACTGCTATTAAGTTATGTGCAAACA	57.553	32.000	2.79	0.00	0.00	2.83
154	155	5.475909	CAGATTTGGCATGGATACTGCTATT	59.524	40.000	0.00	0.00	39.63	1.73
261	262	0.179084	TTGGTCCCGATCGATGCTTC	60.179	55.000	18.66	1.58	0.00	3.86
306	310	1.593265	CCAGGGCAAATCAAGTGGC	59.407	57.895	0.00	0.00	40.67	5.01
307	311	0.901580	AGCCAGGGCAAATCAAGTGG	60.902	55.000	13.63	0.00	44.88	4.00
340	367	2.096713	GTGTAAAGCTGAGACAAGTGCG	60.097	50.000	0.00	0.00	0.00	5.34
358	385	3.347216	ACGTACCTATTAGACACCGTGT	58.653	45.455	3.13	3.13	0.00	4.49
386	413	5.888901	ACGGAATGTACCTCAGGATCTATA	58.111	41.667	0.00	0.00	0.00	1.31
387	414	4.742012	ACGGAATGTACCTCAGGATCTAT	58.258	43.478	0.00	0.00	0.00	1.98
388	415	4.180377	ACGGAATGTACCTCAGGATCTA	57.820	45.455	0.00	0.00	0.00	1.98
389	416	3.033659	ACGGAATGTACCTCAGGATCT	57.966	47.619	0.00	0.00	0.00	2.75
390	417	3.821421	AACGGAATGTACCTCAGGATC	57.179	47.619	0.00	0.00	0.00	3.36
391	418	3.387050	GGTAACGGAATGTACCTCAGGAT	59.613	47.826	0.00	0.00	0.00	3.24
392	419	2.762327	GGTAACGGAATGTACCTCAGGA	59.238	50.000	0.00	0.00	0.00	3.86
394	421	4.467198	AAGGTAACGGAATGTACCTCAG	57.533	45.455	2.96	0.00	41.67	3.35
395	422	4.895668	AAAGGTAACGGAATGTACCTCA	57.104	40.909	2.96	0.00	41.67	3.86
396	423	7.550196	TGATAAAAAGGTAACGGAATGTACCTC	59.450	37.037	2.96	0.00	41.67	3.85
401	428	9.621629	TGATATGATAAAAAGGTAACGGAATGT	57.378	29.630	0.00	0.00	46.39	2.71
420	447	6.362016	GCACGTTGAAACAAAATGTGATATGA	59.638	34.615	11.61	0.00	43.98	2.15
442	469	1.871039	ACACACGTTCCTACAATGCAC	59.129	47.619	0.00	0.00	0.00	4.57
443	470	2.248280	ACACACGTTCCTACAATGCA	57.752	45.000	0.00	0.00	0.00	3.96
769	831	8.436200	GTGCTCGAAATATGGATGTAGAATTAC	58.564	37.037	0.00	0.00	0.00	1.89
772	834	5.934625	GGTGCTCGAAATATGGATGTAGAAT	59.065	40.000	0.00	0.00	0.00	2.40
776	838	4.681074	TGGTGCTCGAAATATGGATGTA	57.319	40.909	0.00	0.00	0.00	2.29
778	840	5.443185	AAATGGTGCTCGAAATATGGATG	57.557	39.130	0.00	0.00	0.00	3.51
779	841	6.942005	TGATAAATGGTGCTCGAAATATGGAT	59.058	34.615	0.00	0.00	0.00	3.41
780	842	6.295249	TGATAAATGGTGCTCGAAATATGGA	58.705	36.000	0.00	0.00	0.00	3.41
781	843	6.558771	TGATAAATGGTGCTCGAAATATGG	57.441	37.500	0.00	0.00	0.00	2.74
782	844	7.588854	CACTTGATAAATGGTGCTCGAAATATG	59.411	37.037	0.00	0.00	0.00	1.78
783	845	7.642669	CACTTGATAAATGGTGCTCGAAATAT	58.357	34.615	0.00	0.00	0.00	1.28
784	846	7.015226	CACTTGATAAATGGTGCTCGAAATA	57.985	36.000	0.00	0.00	0.00	1.40
785	847	5.883661	CACTTGATAAATGGTGCTCGAAAT	58.116	37.500	0.00	0.00	0.00	2.17
787	849	4.944962	CACTTGATAAATGGTGCTCGAA	57.055	40.909	0.00	0.00	0.00	3.71
793	855	2.091541	ACCGGCACTTGATAAATGGTG	58.908	47.619	0.00	0.00	0.00	4.17
980	1067	1.968493	TCCCCTACCGAGATGCAATAC	59.032	52.381	0.00	0.00	0.00	1.89
986	1073	1.674057	GCCATCCCCTACCGAGATG	59.326	63.158	0.00	0.00	37.69	2.90
1006	1093	3.134804	AGGTCATCAGGTAGTATGGTTGC	59.865	47.826	0.00	0.00	0.00	4.17
1118	1205	4.285851	GCTTCTTGCGGTAGTGCT	57.714	55.556	0.00	0.00	35.36	4.40
1230	1338	3.546724	TGGCACAAAGCTAAGTGTTGTA	58.453	40.909	16.86	2.65	44.79	2.41
1310	1418	4.595762	TCTTTAGAGTGTGTACCACCAC	57.404	45.455	9.91	5.39	45.74	4.16
1763	1908	2.240921	TGTGCATAGCATAAGACCCCAA	59.759	45.455	0.00	0.00	41.91	4.12
2115	2279	0.795085	CTTGAGCTCCTTGAAGCACG	59.205	55.000	12.15	0.00	45.00	5.34
2165	2335	8.314021	TGCACAGAAGATAACTAGAGATCAAAA	58.686	33.333	0.00	0.00	0.00	2.44
2185	2355	3.996363	TGTTTGATACAGCTAGTGCACAG	59.004	43.478	21.04	14.99	42.74	3.66
2201	2371	4.155826	GGTACATGCATAGCAACTGTTTGA	59.844	41.667	0.00	0.00	43.62	2.69
2212	2382	4.261322	GCCAACAATCTGGTACATGCATAG	60.261	45.833	0.00	0.00	38.20	2.23
2270	2449	3.072915	TCAGAGTTGGCAGGAGAAATGAA	59.927	43.478	0.00	0.00	0.00	2.57
2283	2462	9.067986	AGTTTTTCTAAATTAGGTCAGAGTTGG	57.932	33.333	0.00	0.00	0.00	3.77
2292	2486	6.717084	AGCTCTGCAGTTTTTCTAAATTAGGT	59.283	34.615	14.67	1.21	0.00	3.08
2317	2511	9.166173	CTTCATAACATCAACAGACAGGAATAA	57.834	33.333	0.00	0.00	0.00	1.40
2566	2771	1.477923	GGTGGGTTTTCTGGTAGTGCA	60.478	52.381	0.00	0.00	0.00	4.57
2630	2835	6.490721	AGGCTAGACTTTATATCGTGCTACTT	59.509	38.462	0.00	0.00	0.00	2.24
2681	2887	5.252547	TGGCAAATGTTTCTATGTCTGCTA	58.747	37.500	0.00	0.00	0.00	3.49
2705	2912	4.158786	CCTGGAGATGATGTCTACCTGAT	58.841	47.826	0.00	0.00	36.93	2.90
2736	2947	2.606308	GCACGAGTCGTCTACCTTTTGA	60.606	50.000	16.86	0.00	38.32	2.69
2818	3034	3.387397	CAGCTGATGAAGATGTGCGATA	58.613	45.455	8.42	0.00	37.53	2.92
2887	3103	2.290960	GGTTTACAGCAAGGGGATGACT	60.291	50.000	0.00	0.00	36.11	3.41
2944	3160	8.242729	ACAAATCAAGACTCCTTTTGAGATTT	57.757	30.769	9.61	0.00	44.42	2.17
2979	3198	1.555538	CGCGCAATCGAGCTACTTC	59.444	57.895	8.75	0.00	38.10	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.