Multiple sequence alignment - TraesCS5A01G458100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G458100 chr5A 100.000 3716 0 0 1 3716 638134899 638131184 0.000000e+00 6863.0
1 TraesCS5A01G458100 chr5A 89.806 206 17 2 3079 3282 612922497 612922294 1.020000e-65 261.0
2 TraesCS5A01G458100 chr5A 86.222 225 15 5 3074 3282 385248252 385248028 2.890000e-56 230.0
3 TraesCS5A01G458100 chr5A 82.456 228 18 3 3074 3279 567884939 567885166 2.950000e-41 180.0
4 TraesCS5A01G458100 chr5A 87.500 112 14 0 1126 1237 76127734 76127845 3.010000e-26 130.0
5 TraesCS5A01G458100 chr5A 93.443 61 3 1 3280 3340 612922261 612922202 5.110000e-14 89.8
6 TraesCS5A01G458100 chr5D 95.595 2111 47 17 992 3069 510096973 510094876 0.000000e+00 3341.0
7 TraesCS5A01G458100 chr5D 85.472 826 43 30 131 915 510097769 510096980 0.000000e+00 789.0
8 TraesCS5A01G458100 chr5D 78.606 416 45 25 3335 3716 510094607 510094202 6.200000e-58 235.0
9 TraesCS5A01G458100 chr5B 94.493 2070 85 18 992 3041 641099843 641097783 0.000000e+00 3164.0
10 TraesCS5A01G458100 chr5B 88.323 805 45 21 154 918 641100642 641099847 0.000000e+00 920.0
11 TraesCS5A01G458100 chr5B 83.824 204 10 10 3340 3522 641097745 641097544 4.930000e-39 172.0
12 TraesCS5A01G458100 chr5B 100.000 33 0 0 2997 3029 641097781 641097749 1.110000e-05 62.1
13 TraesCS5A01G458100 chr1A 89.100 211 21 2 3071 3279 530585535 530585745 1.020000e-65 261.0
14 TraesCS5A01G458100 chr1A 84.118 170 21 4 3107 3275 23903932 23903768 3.840000e-35 159.0
15 TraesCS5A01G458100 chr1A 96.552 58 1 1 3281 3337 71055968 71056025 1.100000e-15 95.3
16 TraesCS5A01G458100 chr1A 96.429 56 2 0 3281 3336 396863744 396863689 3.950000e-15 93.5
17 TraesCS5A01G458100 chr6A 89.048 210 21 2 3071 3279 166500056 166500264 3.680000e-65 259.0
18 TraesCS5A01G458100 chr6A 82.301 226 17 9 3131 3335 547786003 547785780 1.370000e-39 174.0
19 TraesCS5A01G458100 chr6A 96.429 56 2 0 3281 3336 5604030 5604085 3.950000e-15 93.5
20 TraesCS5A01G458100 chr6A 96.429 56 2 0 3281 3336 5775356 5775411 3.950000e-15 93.5
21 TraesCS5A01G458100 chr2A 88.073 218 16 5 3074 3282 33559994 33559778 2.220000e-62 250.0
22 TraesCS5A01G458100 chr2A 94.915 59 3 0 3276 3334 391217124 391217066 3.950000e-15 93.5
23 TraesCS5A01G458100 chr2A 93.443 61 4 0 3276 3336 706504886 706504946 1.420000e-14 91.6
24 TraesCS5A01G458100 chr7A 87.500 208 25 1 3075 3282 48583208 48583002 4.800000e-59 239.0
25 TraesCS5A01G458100 chr7A 92.308 65 5 0 3276 3340 626876978 626877042 3.950000e-15 93.5
26 TraesCS5A01G458100 chr2D 85.062 241 18 11 3056 3279 36275098 36275337 2.890000e-56 230.0
27 TraesCS5A01G458100 chr4A 88.608 158 16 2 3123 3279 189671784 189671940 1.360000e-44 191.0
28 TraesCS5A01G458100 chr1B 89.873 79 5 3 3280 3358 361488223 361488148 8.490000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G458100 chr5A 638131184 638134899 3715 True 6863.000 6863 100.000000 1 3716 1 chr5A.!!$R2 3715
1 TraesCS5A01G458100 chr5D 510094202 510097769 3567 True 1455.000 3341 86.557667 131 3716 3 chr5D.!!$R1 3585
2 TraesCS5A01G458100 chr5B 641097544 641100642 3098 True 1079.525 3164 91.660000 154 3522 4 chr5B.!!$R1 3368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 1009 0.039618 TTCCCCCTTTCACCATGCTC 59.960 55.0 0.00 0.0 0.00 4.26 F
966 1040 0.105778 GCTAGCGAGCCCATCTTTCT 59.894 55.0 7.71 0.0 43.49 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2701 2784 1.340308 TGCTTGCTACTGATGCATGGT 60.340 47.619 2.46 5.47 40.34 3.55 R
2964 3074 2.449464 TGAGGCCTGATTTCAACCATG 58.551 47.619 12.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.959596 AGACTATAAGTTTCTCGCGTGA 57.040 40.909 5.77 6.33 0.00 4.35
25 26 5.306532 AGACTATAAGTTTCTCGCGTGAA 57.693 39.130 18.79 18.79 0.00 3.18
26 27 5.706916 AGACTATAAGTTTCTCGCGTGAAA 58.293 37.500 27.07 27.07 34.05 2.69
27 28 6.154445 AGACTATAAGTTTCTCGCGTGAAAA 58.846 36.000 30.87 19.65 37.63 2.29
28 29 6.643770 AGACTATAAGTTTCTCGCGTGAAAAA 59.356 34.615 30.87 21.42 37.63 1.94
49 50 6.707273 AAAATTGTACTAGGGACCCTTACA 57.293 37.500 20.96 19.03 34.61 2.41
50 51 5.952347 AATTGTACTAGGGACCCTTACAG 57.048 43.478 20.96 13.08 31.21 2.74
51 52 4.680278 TTGTACTAGGGACCCTTACAGA 57.320 45.455 20.96 10.06 31.21 3.41
52 53 4.246712 TGTACTAGGGACCCTTACAGAG 57.753 50.000 20.96 12.26 34.61 3.35
53 54 3.595138 TGTACTAGGGACCCTTACAGAGT 59.405 47.826 20.96 17.79 34.61 3.24
54 55 4.790246 TGTACTAGGGACCCTTACAGAGTA 59.210 45.833 20.96 16.69 34.61 2.59
55 56 5.434376 TGTACTAGGGACCCTTACAGAGTAT 59.566 44.000 20.96 0.00 34.61 2.12
56 57 5.484734 ACTAGGGACCCTTACAGAGTATT 57.515 43.478 20.96 0.00 34.61 1.89
57 58 6.603110 ACTAGGGACCCTTACAGAGTATTA 57.397 41.667 20.96 0.00 34.61 0.98
58 59 7.176909 ACTAGGGACCCTTACAGAGTATTAT 57.823 40.000 20.96 0.00 34.61 1.28
59 60 7.602868 ACTAGGGACCCTTACAGAGTATTATT 58.397 38.462 20.96 0.00 34.61 1.40
60 61 8.740512 ACTAGGGACCCTTACAGAGTATTATTA 58.259 37.037 20.96 0.00 34.61 0.98
61 62 9.245481 CTAGGGACCCTTACAGAGTATTATTAG 57.755 40.741 20.96 0.00 34.61 1.73
62 63 7.017531 AGGGACCCTTACAGAGTATTATTAGG 58.982 42.308 7.44 0.00 0.00 2.69
63 64 6.212993 GGGACCCTTACAGAGTATTATTAGGG 59.787 46.154 2.09 0.00 45.29 3.53
66 67 7.850935 CCCTTACAGAGTATTATTAGGGTGA 57.149 40.000 0.00 0.00 37.01 4.02
67 68 7.668492 CCCTTACAGAGTATTATTAGGGTGAC 58.332 42.308 0.00 0.00 37.01 3.67
68 69 7.368833 CCTTACAGAGTATTATTAGGGTGACG 58.631 42.308 0.00 0.00 0.00 4.35
69 70 7.230108 CCTTACAGAGTATTATTAGGGTGACGA 59.770 40.741 0.00 0.00 0.00 4.20
70 71 8.701908 TTACAGAGTATTATTAGGGTGACGAT 57.298 34.615 0.00 0.00 0.00 3.73
71 72 7.216973 ACAGAGTATTATTAGGGTGACGATC 57.783 40.000 0.00 0.00 0.00 3.69
72 73 6.072618 ACAGAGTATTATTAGGGTGACGATCG 60.073 42.308 14.88 14.88 0.00 3.69
73 74 6.148976 CAGAGTATTATTAGGGTGACGATCGA 59.851 42.308 24.34 0.00 0.00 3.59
74 75 6.372103 AGAGTATTATTAGGGTGACGATCGAG 59.628 42.308 24.34 0.00 0.00 4.04
75 76 3.637998 TTATTAGGGTGACGATCGAGC 57.362 47.619 24.34 13.69 0.00 5.03
76 77 0.311165 ATTAGGGTGACGATCGAGCG 59.689 55.000 23.12 23.12 37.29 5.03
78 79 1.028330 TAGGGTGACGATCGAGCGTT 61.028 55.000 30.68 16.26 45.72 4.84
79 80 2.158959 GGGTGACGATCGAGCGTTG 61.159 63.158 30.68 0.54 45.72 4.10
80 81 1.443872 GGTGACGATCGAGCGTTGT 60.444 57.895 30.68 7.38 45.72 3.32
81 82 1.007336 GGTGACGATCGAGCGTTGTT 61.007 55.000 30.68 6.94 45.72 2.83
82 83 0.091344 GTGACGATCGAGCGTTGTTG 59.909 55.000 30.68 0.00 45.72 3.33
83 84 1.057361 GACGATCGAGCGTTGTTGC 59.943 57.895 30.68 13.23 45.72 4.17
84 85 2.279937 GACGATCGAGCGTTGTTGCC 62.280 60.000 30.68 12.44 45.72 4.52
85 86 2.395690 GATCGAGCGTTGTTGCCG 59.604 61.111 0.00 0.00 34.65 5.69
91 92 2.640421 GCGTTGTTGCCGCCTTTA 59.360 55.556 0.00 0.00 45.20 1.85
92 93 1.008309 GCGTTGTTGCCGCCTTTAA 60.008 52.632 0.00 0.00 45.20 1.52
93 94 1.001745 GCGTTGTTGCCGCCTTTAAG 61.002 55.000 0.00 0.00 45.20 1.85
94 95 1.001745 CGTTGTTGCCGCCTTTAAGC 61.002 55.000 0.00 0.00 0.00 3.09
95 96 0.666274 GTTGTTGCCGCCTTTAAGCC 60.666 55.000 0.00 0.00 0.00 4.35
96 97 0.825840 TTGTTGCCGCCTTTAAGCCT 60.826 50.000 0.00 0.00 0.00 4.58
97 98 0.825840 TGTTGCCGCCTTTAAGCCTT 60.826 50.000 0.00 0.00 0.00 4.35
98 99 0.109272 GTTGCCGCCTTTAAGCCTTC 60.109 55.000 0.00 0.00 0.00 3.46
99 100 0.538516 TTGCCGCCTTTAAGCCTTCA 60.539 50.000 0.00 0.00 0.00 3.02
100 101 0.323360 TGCCGCCTTTAAGCCTTCAT 60.323 50.000 0.00 0.00 0.00 2.57
101 102 0.382158 GCCGCCTTTAAGCCTTCATC 59.618 55.000 0.00 0.00 0.00 2.92
102 103 2.019156 GCCGCCTTTAAGCCTTCATCT 61.019 52.381 0.00 0.00 0.00 2.90
103 104 1.943340 CCGCCTTTAAGCCTTCATCTC 59.057 52.381 0.00 0.00 0.00 2.75
104 105 2.632377 CGCCTTTAAGCCTTCATCTCA 58.368 47.619 0.00 0.00 0.00 3.27
105 106 2.611292 CGCCTTTAAGCCTTCATCTCAG 59.389 50.000 0.00 0.00 0.00 3.35
106 107 2.357323 GCCTTTAAGCCTTCATCTCAGC 59.643 50.000 0.00 0.00 0.00 4.26
107 108 3.614092 CCTTTAAGCCTTCATCTCAGCA 58.386 45.455 0.00 0.00 0.00 4.41
108 109 4.012374 CCTTTAAGCCTTCATCTCAGCAA 58.988 43.478 0.00 0.00 0.00 3.91
109 110 4.460382 CCTTTAAGCCTTCATCTCAGCAAA 59.540 41.667 0.00 0.00 0.00 3.68
110 111 5.047802 CCTTTAAGCCTTCATCTCAGCAAAA 60.048 40.000 0.00 0.00 0.00 2.44
111 112 6.350780 CCTTTAAGCCTTCATCTCAGCAAAAT 60.351 38.462 0.00 0.00 0.00 1.82
112 113 4.715527 AAGCCTTCATCTCAGCAAAATC 57.284 40.909 0.00 0.00 0.00 2.17
113 114 3.693807 AGCCTTCATCTCAGCAAAATCA 58.306 40.909 0.00 0.00 0.00 2.57
114 115 4.084287 AGCCTTCATCTCAGCAAAATCAA 58.916 39.130 0.00 0.00 0.00 2.57
115 116 4.525487 AGCCTTCATCTCAGCAAAATCAAA 59.475 37.500 0.00 0.00 0.00 2.69
116 117 5.011329 AGCCTTCATCTCAGCAAAATCAAAA 59.989 36.000 0.00 0.00 0.00 2.44
117 118 5.119743 GCCTTCATCTCAGCAAAATCAAAAC 59.880 40.000 0.00 0.00 0.00 2.43
118 119 6.453092 CCTTCATCTCAGCAAAATCAAAACT 58.547 36.000 0.00 0.00 0.00 2.66
119 120 6.927381 CCTTCATCTCAGCAAAATCAAAACTT 59.073 34.615 0.00 0.00 0.00 2.66
120 121 7.095774 CCTTCATCTCAGCAAAATCAAAACTTG 60.096 37.037 0.00 0.00 0.00 3.16
121 122 6.808829 TCATCTCAGCAAAATCAAAACTTGT 58.191 32.000 0.00 0.00 0.00 3.16
122 123 7.267128 TCATCTCAGCAAAATCAAAACTTGTT 58.733 30.769 0.00 0.00 0.00 2.83
123 124 8.412456 TCATCTCAGCAAAATCAAAACTTGTTA 58.588 29.630 0.00 0.00 0.00 2.41
124 125 9.033481 CATCTCAGCAAAATCAAAACTTGTTAA 57.967 29.630 0.00 0.00 0.00 2.01
125 126 8.994429 TCTCAGCAAAATCAAAACTTGTTAAA 57.006 26.923 0.00 0.00 0.00 1.52
126 127 9.429359 TCTCAGCAAAATCAAAACTTGTTAAAA 57.571 25.926 0.00 0.00 0.00 1.52
127 128 9.476761 CTCAGCAAAATCAAAACTTGTTAAAAC 57.523 29.630 0.00 0.00 0.00 2.43
128 129 8.447053 TCAGCAAAATCAAAACTTGTTAAAACC 58.553 29.630 0.00 0.00 0.00 3.27
129 130 7.696035 CAGCAAAATCAAAACTTGTTAAAACCC 59.304 33.333 0.00 0.00 0.00 4.11
396 421 3.602103 CTCACTCCGAGCTGAGCT 58.398 61.111 6.69 6.69 43.88 4.09
436 461 0.959553 TTTGCCCGCGTCCAATTTAA 59.040 45.000 4.92 0.00 0.00 1.52
534 559 1.142748 GAGCTCACTCCCACATCCG 59.857 63.158 9.40 0.00 36.90 4.18
536 561 2.187946 CTCACTCCCACATCCGCC 59.812 66.667 0.00 0.00 0.00 6.13
541 566 3.000819 TCCCACATCCGCCGTCTT 61.001 61.111 0.00 0.00 0.00 3.01
544 569 1.672854 CCCACATCCGCCGTCTTCTA 61.673 60.000 0.00 0.00 0.00 2.10
550 575 0.681887 TCCGCCGTCTTCTACATCCA 60.682 55.000 0.00 0.00 0.00 3.41
554 579 1.689273 GCCGTCTTCTACATCCATCCT 59.311 52.381 0.00 0.00 0.00 3.24
555 580 2.103263 GCCGTCTTCTACATCCATCCTT 59.897 50.000 0.00 0.00 0.00 3.36
556 581 3.800604 GCCGTCTTCTACATCCATCCTTC 60.801 52.174 0.00 0.00 0.00 3.46
557 582 3.243907 CCGTCTTCTACATCCATCCTTCC 60.244 52.174 0.00 0.00 0.00 3.46
558 583 3.243907 CGTCTTCTACATCCATCCTTCCC 60.244 52.174 0.00 0.00 0.00 3.97
559 584 3.071747 GTCTTCTACATCCATCCTTCCCC 59.928 52.174 0.00 0.00 0.00 4.81
560 585 1.717032 TCTACATCCATCCTTCCCCG 58.283 55.000 0.00 0.00 0.00 5.73
561 586 0.687354 CTACATCCATCCTTCCCCGG 59.313 60.000 0.00 0.00 0.00 5.73
604 629 2.819608 TCCGCCATTTCTTTCTTTCCTG 59.180 45.455 0.00 0.00 0.00 3.86
661 710 6.094048 AGAGAGAGAGAGAGATTTTCGTTCTG 59.906 42.308 0.00 0.00 0.00 3.02
685 734 1.916181 TGTTTCTTCCTCCCCCATCTC 59.084 52.381 0.00 0.00 0.00 2.75
693 742 4.928520 CCCCCATCTCCCCTCCCC 62.929 77.778 0.00 0.00 0.00 4.81
698 747 0.259938 CCATCTCCCCTCCCCTTTTG 59.740 60.000 0.00 0.00 0.00 2.44
699 748 0.259938 CATCTCCCCTCCCCTTTTGG 59.740 60.000 0.00 0.00 39.97 3.28
719 784 2.643551 GTCTGTCTCTCTCTCTCTGGG 58.356 57.143 0.00 0.00 0.00 4.45
824 889 5.163913 CGCCATTGATTTTCGAGATAGATCC 60.164 44.000 0.00 0.00 0.00 3.36
835 900 0.246086 GATAGATCCGAGCCAGCCAG 59.754 60.000 0.00 0.00 0.00 4.85
896 970 3.128415 GCTTGGATTTGCTCCTTTCTCTC 59.872 47.826 0.00 0.00 45.21 3.20
903 977 1.975327 CTCCTTTCTCTCCCGCACA 59.025 57.895 0.00 0.00 0.00 4.57
911 985 0.957395 CTCTCCCGCACAAGCACAAT 60.957 55.000 0.00 0.00 42.27 2.71
915 989 1.518056 CCCGCACAAGCACAATCACT 61.518 55.000 0.00 0.00 42.27 3.41
918 992 2.046313 CGCACAAGCACAATCACTTTC 58.954 47.619 0.00 0.00 42.27 2.62
919 993 2.397549 GCACAAGCACAATCACTTTCC 58.602 47.619 0.00 0.00 41.58 3.13
920 994 2.863704 GCACAAGCACAATCACTTTCCC 60.864 50.000 0.00 0.00 41.58 3.97
921 995 1.963515 ACAAGCACAATCACTTTCCCC 59.036 47.619 0.00 0.00 0.00 4.81
922 996 1.273327 CAAGCACAATCACTTTCCCCC 59.727 52.381 0.00 0.00 0.00 5.40
923 997 0.779997 AGCACAATCACTTTCCCCCT 59.220 50.000 0.00 0.00 0.00 4.79
924 998 1.147817 AGCACAATCACTTTCCCCCTT 59.852 47.619 0.00 0.00 0.00 3.95
925 999 1.970640 GCACAATCACTTTCCCCCTTT 59.029 47.619 0.00 0.00 0.00 3.11
926 1000 2.029020 GCACAATCACTTTCCCCCTTTC 60.029 50.000 0.00 0.00 0.00 2.62
927 1001 3.230134 CACAATCACTTTCCCCCTTTCA 58.770 45.455 0.00 0.00 0.00 2.69
928 1002 3.005791 CACAATCACTTTCCCCCTTTCAC 59.994 47.826 0.00 0.00 0.00 3.18
929 1003 2.562738 CAATCACTTTCCCCCTTTCACC 59.437 50.000 0.00 0.00 0.00 4.02
930 1004 1.227249 TCACTTTCCCCCTTTCACCA 58.773 50.000 0.00 0.00 0.00 4.17
931 1005 1.786441 TCACTTTCCCCCTTTCACCAT 59.214 47.619 0.00 0.00 0.00 3.55
932 1006 1.895131 CACTTTCCCCCTTTCACCATG 59.105 52.381 0.00 0.00 0.00 3.66
933 1007 0.897621 CTTTCCCCCTTTCACCATGC 59.102 55.000 0.00 0.00 0.00 4.06
934 1008 0.486879 TTTCCCCCTTTCACCATGCT 59.513 50.000 0.00 0.00 0.00 3.79
935 1009 0.039618 TTCCCCCTTTCACCATGCTC 59.960 55.000 0.00 0.00 0.00 4.26
936 1010 1.380380 CCCCCTTTCACCATGCTCC 60.380 63.158 0.00 0.00 0.00 4.70
937 1011 1.693640 CCCCTTTCACCATGCTCCT 59.306 57.895 0.00 0.00 0.00 3.69
938 1012 0.394899 CCCCTTTCACCATGCTCCTC 60.395 60.000 0.00 0.00 0.00 3.71
939 1013 0.394899 CCCTTTCACCATGCTCCTCC 60.395 60.000 0.00 0.00 0.00 4.30
940 1014 0.329261 CCTTTCACCATGCTCCTCCA 59.671 55.000 0.00 0.00 0.00 3.86
941 1015 1.064166 CCTTTCACCATGCTCCTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
942 1016 2.622452 CCTTTCACCATGCTCCTCCATT 60.622 50.000 0.00 0.00 0.00 3.16
943 1017 2.133281 TTCACCATGCTCCTCCATTG 57.867 50.000 0.00 0.00 0.00 2.82
944 1018 0.394762 TCACCATGCTCCTCCATTGC 60.395 55.000 0.00 0.00 0.00 3.56
945 1019 0.395311 CACCATGCTCCTCCATTGCT 60.395 55.000 0.00 0.00 0.00 3.91
946 1020 1.134007 CACCATGCTCCTCCATTGCTA 60.134 52.381 0.00 0.00 0.00 3.49
947 1021 1.142465 ACCATGCTCCTCCATTGCTAG 59.858 52.381 0.00 0.00 0.00 3.42
948 1022 1.236628 CATGCTCCTCCATTGCTAGC 58.763 55.000 8.10 8.10 0.00 3.42
949 1023 1.138568 ATGCTCCTCCATTGCTAGCT 58.861 50.000 17.23 0.00 34.28 3.32
950 1024 1.793414 TGCTCCTCCATTGCTAGCTA 58.207 50.000 17.23 9.14 34.28 3.32
951 1025 1.690893 TGCTCCTCCATTGCTAGCTAG 59.309 52.381 16.84 16.84 34.28 3.42
964 1038 4.865865 GCTAGCGAGCCCATCTTT 57.134 55.556 7.71 0.00 43.49 2.52
965 1039 2.611012 GCTAGCGAGCCCATCTTTC 58.389 57.895 7.71 0.00 43.49 2.62
966 1040 0.105778 GCTAGCGAGCCCATCTTTCT 59.894 55.000 7.71 0.00 43.49 2.52
967 1041 1.474143 GCTAGCGAGCCCATCTTTCTT 60.474 52.381 7.71 0.00 43.49 2.52
968 1042 2.911484 CTAGCGAGCCCATCTTTCTTT 58.089 47.619 0.00 0.00 0.00 2.52
969 1043 1.743996 AGCGAGCCCATCTTTCTTTC 58.256 50.000 0.00 0.00 0.00 2.62
970 1044 1.280421 AGCGAGCCCATCTTTCTTTCT 59.720 47.619 0.00 0.00 0.00 2.52
971 1045 1.668237 GCGAGCCCATCTTTCTTTCTC 59.332 52.381 0.00 0.00 0.00 2.87
972 1046 2.679349 GCGAGCCCATCTTTCTTTCTCT 60.679 50.000 0.00 0.00 0.00 3.10
973 1047 2.935201 CGAGCCCATCTTTCTTTCTCTG 59.065 50.000 0.00 0.00 0.00 3.35
974 1048 3.277715 GAGCCCATCTTTCTTTCTCTGG 58.722 50.000 0.00 0.00 0.00 3.86
975 1049 2.646798 AGCCCATCTTTCTTTCTCTGGT 59.353 45.455 0.00 0.00 0.00 4.00
976 1050 3.013219 GCCCATCTTTCTTTCTCTGGTC 58.987 50.000 0.00 0.00 0.00 4.02
977 1051 3.615155 CCCATCTTTCTTTCTCTGGTCC 58.385 50.000 0.00 0.00 0.00 4.46
978 1052 3.009473 CCCATCTTTCTTTCTCTGGTCCA 59.991 47.826 0.00 0.00 0.00 4.02
979 1053 4.260170 CCATCTTTCTTTCTCTGGTCCAG 58.740 47.826 13.21 13.21 0.00 3.86
980 1054 4.260170 CATCTTTCTTTCTCTGGTCCAGG 58.740 47.826 19.11 9.75 31.51 4.45
981 1055 3.318313 TCTTTCTTTCTCTGGTCCAGGT 58.682 45.455 19.11 0.00 31.51 4.00
982 1056 3.325135 TCTTTCTTTCTCTGGTCCAGGTC 59.675 47.826 19.11 0.00 31.51 3.85
983 1057 1.257743 TCTTTCTCTGGTCCAGGTCG 58.742 55.000 19.11 8.05 31.51 4.79
984 1058 0.969894 CTTTCTCTGGTCCAGGTCGT 59.030 55.000 19.11 0.00 31.51 4.34
985 1059 0.966920 TTTCTCTGGTCCAGGTCGTC 59.033 55.000 19.11 0.00 31.51 4.20
986 1060 0.898789 TTCTCTGGTCCAGGTCGTCC 60.899 60.000 19.11 0.00 31.51 4.79
987 1061 1.606601 CTCTGGTCCAGGTCGTCCA 60.607 63.158 19.11 0.00 35.89 4.02
988 1062 1.878656 CTCTGGTCCAGGTCGTCCAC 61.879 65.000 19.11 0.00 35.89 4.02
989 1063 3.282745 CTGGTCCAGGTCGTCCACG 62.283 68.421 11.46 0.00 41.45 4.94
990 1064 3.300765 GGTCCAGGTCGTCCACGT 61.301 66.667 0.51 0.00 40.80 4.49
1796 1873 2.741985 CAGCCAATGCCACGACGA 60.742 61.111 0.00 0.00 38.69 4.20
1797 1874 2.742372 AGCCAATGCCACGACGAC 60.742 61.111 0.00 0.00 38.69 4.34
1802 1879 0.948623 CAATGCCACGACGACCAGAA 60.949 55.000 0.00 0.00 0.00 3.02
1968 2045 4.408821 AGCTCGGCGGCATGGAAA 62.409 61.111 19.61 0.00 34.17 3.13
2052 2129 1.443407 CGCGATCAGGTCAGGGATT 59.557 57.895 0.00 0.00 0.00 3.01
2370 2447 2.279517 CTGGGCATCTACGACGCC 60.280 66.667 0.00 0.00 40.49 5.68
2522 2605 4.132441 CGGCGGCAATGGCAATGT 62.132 61.111 10.53 0.00 43.71 2.71
2550 2633 0.325933 TGCTGCTGCAGACCTTGTAT 59.674 50.000 32.30 0.00 45.31 2.29
2553 2636 2.229784 GCTGCTGCAGACCTTGTATTTT 59.770 45.455 32.30 0.00 39.41 1.82
2722 2805 1.333931 CCATGCATCAGTAGCAAGCAG 59.666 52.381 0.00 0.00 46.27 4.24
2738 2825 1.969103 GCAGCTAGCAAGGTTTTTCG 58.031 50.000 18.83 0.00 44.79 3.46
2873 2961 4.452795 TCTTTCATTTTTGTGCATGCATGG 59.547 37.500 25.64 10.03 0.00 3.66
2874 2962 2.701107 TCATTTTTGTGCATGCATGGG 58.299 42.857 25.64 9.59 0.00 4.00
2876 2964 2.634815 TTTTTGTGCATGCATGGGTT 57.365 40.000 25.64 0.00 0.00 4.11
2877 2965 2.166821 TTTTGTGCATGCATGGGTTC 57.833 45.000 25.64 10.35 0.00 3.62
2878 2966 1.046204 TTTGTGCATGCATGGGTTCA 58.954 45.000 25.64 13.14 0.00 3.18
2879 2967 0.604073 TTGTGCATGCATGGGTTCAG 59.396 50.000 25.64 0.91 0.00 3.02
2880 2968 1.252215 TGTGCATGCATGGGTTCAGG 61.252 55.000 25.64 0.11 0.00 3.86
2912 3022 6.861144 TGAGATCATCTATCCATTCACGATC 58.139 40.000 0.00 0.00 34.90 3.69
2959 3069 2.861274 TGCCTCATGAAATGTGTGACA 58.139 42.857 0.00 0.00 46.80 3.58
2964 3074 5.675575 GCCTCATGAAATGTGTGACAGATTC 60.676 44.000 8.47 3.55 46.80 2.52
2965 3075 5.413523 CCTCATGAAATGTGTGACAGATTCA 59.586 40.000 8.47 8.89 46.80 2.57
2995 3105 2.811410 TCAGGCCTCAATGCAGAAAAT 58.189 42.857 0.00 0.00 0.00 1.82
3031 3146 9.191995 GAATTTATCCAAACTGTTTGTTACTGG 57.808 33.333 26.35 14.58 38.03 4.00
3089 3310 0.621082 TATGGGCATGTTCGGTTCCA 59.379 50.000 0.00 0.00 0.00 3.53
3091 3312 0.251564 TGGGCATGTTCGGTTCCAAT 60.252 50.000 0.00 0.00 0.00 3.16
3093 3314 2.096248 GGGCATGTTCGGTTCCAATAA 58.904 47.619 0.00 0.00 0.00 1.40
3096 3317 4.359706 GGCATGTTCGGTTCCAATAAATC 58.640 43.478 0.00 0.00 0.00 2.17
3098 3319 4.798387 GCATGTTCGGTTCCAATAAATCAC 59.202 41.667 0.00 0.00 0.00 3.06
3099 3320 5.339990 CATGTTCGGTTCCAATAAATCACC 58.660 41.667 0.00 0.00 0.00 4.02
3100 3321 4.658063 TGTTCGGTTCCAATAAATCACCT 58.342 39.130 0.00 0.00 0.00 4.00
3101 3322 4.457603 TGTTCGGTTCCAATAAATCACCTG 59.542 41.667 0.00 0.00 0.00 4.00
3102 3323 4.561500 TCGGTTCCAATAAATCACCTGA 57.438 40.909 0.00 0.00 0.00 3.86
3103 3324 4.258543 TCGGTTCCAATAAATCACCTGAC 58.741 43.478 0.00 0.00 0.00 3.51
3104 3325 4.019681 TCGGTTCCAATAAATCACCTGACT 60.020 41.667 0.00 0.00 0.00 3.41
3107 3328 6.542370 CGGTTCCAATAAATCACCTGACTTAT 59.458 38.462 0.00 0.00 28.87 1.73
3134 3355 7.426929 GTCATGTGACTTAAAATCAGTGACT 57.573 36.000 17.45 0.00 41.65 3.41
3135 3356 7.865707 GTCATGTGACTTAAAATCAGTGACTT 58.134 34.615 17.45 0.00 41.65 3.01
3136 3357 8.988934 GTCATGTGACTTAAAATCAGTGACTTA 58.011 33.333 17.45 0.00 41.65 2.24
3137 3358 9.725019 TCATGTGACTTAAAATCAGTGACTTAT 57.275 29.630 0.00 0.00 30.39 1.73
3154 3375 4.000988 ACTTATAAGTCACGCCTGTTTGG 58.999 43.478 12.50 0.00 32.86 3.28
3155 3376 2.561478 ATAAGTCACGCCTGTTTGGT 57.439 45.000 0.00 0.00 38.35 3.67
3157 3378 0.738389 AAGTCACGCCTGTTTGGTTG 59.262 50.000 0.00 0.00 38.35 3.77
3158 3379 0.393808 AGTCACGCCTGTTTGGTTGT 60.394 50.000 0.00 0.00 38.35 3.32
3159 3380 0.028902 GTCACGCCTGTTTGGTTGTC 59.971 55.000 0.00 0.00 38.35 3.18
3160 3381 0.393132 TCACGCCTGTTTGGTTGTCA 60.393 50.000 0.00 0.00 38.35 3.58
3162 3383 0.951558 ACGCCTGTTTGGTTGTCATC 59.048 50.000 0.00 0.00 38.35 2.92
3163 3384 1.238439 CGCCTGTTTGGTTGTCATCT 58.762 50.000 0.00 0.00 38.35 2.90
3165 3386 2.229792 GCCTGTTTGGTTGTCATCTGA 58.770 47.619 0.00 0.00 38.35 3.27
3166 3387 2.030805 GCCTGTTTGGTTGTCATCTGAC 60.031 50.000 3.34 3.34 40.76 3.51
3167 3388 2.554032 CCTGTTTGGTTGTCATCTGACC 59.446 50.000 7.81 0.00 44.15 4.02
3168 3389 3.213506 CTGTTTGGTTGTCATCTGACCA 58.786 45.455 7.81 0.00 44.15 4.02
3169 3390 2.948979 TGTTTGGTTGTCATCTGACCAC 59.051 45.455 7.81 6.90 42.77 4.16
3170 3391 2.948979 GTTTGGTTGTCATCTGACCACA 59.051 45.455 14.30 5.95 42.77 4.17
3171 3392 2.254546 TGGTTGTCATCTGACCACAC 57.745 50.000 14.30 6.43 44.15 3.82
3172 3393 1.768275 TGGTTGTCATCTGACCACACT 59.232 47.619 14.30 0.00 44.15 3.55
3173 3394 2.172505 TGGTTGTCATCTGACCACACTT 59.827 45.455 14.30 0.00 44.15 3.16
3174 3395 3.214328 GGTTGTCATCTGACCACACTTT 58.786 45.455 14.30 0.00 44.15 2.66
3175 3396 3.632145 GGTTGTCATCTGACCACACTTTT 59.368 43.478 14.30 0.00 44.15 2.27
3176 3397 4.097892 GGTTGTCATCTGACCACACTTTTT 59.902 41.667 14.30 0.00 44.15 1.94
3177 3398 5.273944 GTTGTCATCTGACCACACTTTTTC 58.726 41.667 7.81 0.00 44.15 2.29
3179 3400 4.335315 TGTCATCTGACCACACTTTTTCAC 59.665 41.667 7.81 0.00 44.15 3.18
3180 3401 3.882888 TCATCTGACCACACTTTTTCACC 59.117 43.478 0.00 0.00 0.00 4.02
3181 3402 3.644966 TCTGACCACACTTTTTCACCT 57.355 42.857 0.00 0.00 0.00 4.00
3182 3403 3.963129 TCTGACCACACTTTTTCACCTT 58.037 40.909 0.00 0.00 0.00 3.50
3183 3404 3.694072 TCTGACCACACTTTTTCACCTTG 59.306 43.478 0.00 0.00 0.00 3.61
3186 3407 4.282195 TGACCACACTTTTTCACCTTGTTT 59.718 37.500 0.00 0.00 0.00 2.83
3189 3410 6.760291 ACCACACTTTTTCACCTTGTTTTTA 58.240 32.000 0.00 0.00 0.00 1.52
3191 3412 7.880713 ACCACACTTTTTCACCTTGTTTTTAAT 59.119 29.630 0.00 0.00 0.00 1.40
3212 3433 6.693315 AATATAAAGGTGATGAAACCCACG 57.307 37.500 0.00 0.00 41.54 4.94
3215 3436 3.495434 AAGGTGATGAAACCCACGTAA 57.505 42.857 0.00 0.00 41.54 3.18
3216 3437 3.495434 AGGTGATGAAACCCACGTAAA 57.505 42.857 0.00 0.00 41.54 2.01
3219 3440 4.277423 AGGTGATGAAACCCACGTAAAAAG 59.723 41.667 0.00 0.00 41.54 2.27
3220 3441 4.276431 GGTGATGAAACCCACGTAAAAAGA 59.724 41.667 0.00 0.00 33.79 2.52
3222 3443 4.517453 TGATGAAACCCACGTAAAAAGAGG 59.483 41.667 0.00 0.00 0.00 3.69
3223 3444 3.888583 TGAAACCCACGTAAAAAGAGGT 58.111 40.909 0.00 0.00 0.00 3.85
3226 3447 2.842457 ACCCACGTAAAAAGAGGTGAC 58.158 47.619 0.00 0.00 37.39 3.67
3228 3449 3.118149 ACCCACGTAAAAAGAGGTGACTT 60.118 43.478 0.00 0.00 44.43 3.01
3229 3450 4.101430 ACCCACGTAAAAAGAGGTGACTTA 59.899 41.667 0.00 0.00 44.43 2.24
3230 3451 5.221783 ACCCACGTAAAAAGAGGTGACTTAT 60.222 40.000 0.00 0.00 44.43 1.73
3231 3452 6.014327 ACCCACGTAAAAAGAGGTGACTTATA 60.014 38.462 0.00 0.00 44.43 0.98
3232 3453 6.875195 CCCACGTAAAAAGAGGTGACTTATAA 59.125 38.462 0.00 0.00 44.43 0.98
3233 3454 7.064253 CCCACGTAAAAAGAGGTGACTTATAAG 59.936 40.741 11.05 11.05 44.43 1.73
3234 3455 7.601508 CCACGTAAAAAGAGGTGACTTATAAGT 59.398 37.037 18.05 18.05 44.43 2.24
3235 3456 8.985805 CACGTAAAAAGAGGTGACTTATAAGTT 58.014 33.333 18.96 3.42 44.43 2.66
3236 3457 9.551734 ACGTAAAAAGAGGTGACTTATAAGTTT 57.448 29.630 18.96 8.71 44.43 2.66
3244 3465 9.503399 AGAGGTGACTTATAAGTTTTAAGTTGG 57.497 33.333 18.96 0.00 44.43 3.77
3245 3466 8.631480 AGGTGACTTATAAGTTTTAAGTTGGG 57.369 34.615 18.96 0.00 39.40 4.12
3246 3467 7.668469 AGGTGACTTATAAGTTTTAAGTTGGGG 59.332 37.037 18.96 0.00 39.40 4.96
3247 3468 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
3248 3469 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
3249 3470 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
3250 3471 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
3251 3472 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
3252 3473 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
3253 3474 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
3254 3475 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
3255 3476 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
3256 3477 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
3257 3478 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
3258 3479 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
3259 3480 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
3260 3481 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
3261 3482 0.331278 TGGGGTGGAGCAACTTATGG 59.669 55.000 0.00 0.00 0.00 2.74
3262 3483 1.037579 GGGGTGGAGCAACTTATGGC 61.038 60.000 0.00 0.00 0.00 4.40
3263 3484 0.034089 GGGTGGAGCAACTTATGGCT 60.034 55.000 0.00 0.00 44.48 4.75
3264 3485 1.616994 GGGTGGAGCAACTTATGGCTT 60.617 52.381 0.00 0.00 41.22 4.35
3265 3486 2.356741 GGGTGGAGCAACTTATGGCTTA 60.357 50.000 0.00 0.00 41.22 3.09
3266 3487 3.555966 GGTGGAGCAACTTATGGCTTAT 58.444 45.455 0.00 0.00 41.22 1.73
3267 3488 4.445735 GGGTGGAGCAACTTATGGCTTATA 60.446 45.833 0.00 0.00 41.22 0.98
3268 3489 5.130350 GGTGGAGCAACTTATGGCTTATAA 58.870 41.667 0.00 0.00 41.22 0.98
3278 3499 5.690865 CTTATGGCTTATAAGTTGGGGTGA 58.309 41.667 13.91 0.00 42.11 4.02
3279 3500 4.814224 ATGGCTTATAAGTTGGGGTGAT 57.186 40.909 13.91 0.00 0.00 3.06
3280 3501 4.601406 TGGCTTATAAGTTGGGGTGATT 57.399 40.909 13.91 0.00 0.00 2.57
3281 3502 4.941713 TGGCTTATAAGTTGGGGTGATTT 58.058 39.130 13.91 0.00 0.00 2.17
3282 3503 5.337788 TGGCTTATAAGTTGGGGTGATTTT 58.662 37.500 13.91 0.00 0.00 1.82
3283 3504 5.782845 TGGCTTATAAGTTGGGGTGATTTTT 59.217 36.000 13.91 0.00 0.00 1.94
3307 3528 9.737427 TTTTGCATTTTTCGACTTATAAGTTGA 57.263 25.926 25.57 25.57 45.37 3.18
3308 3529 9.906660 TTTGCATTTTTCGACTTATAAGTTGAT 57.093 25.926 28.42 15.68 46.07 2.57
3309 3530 8.894409 TGCATTTTTCGACTTATAAGTTGATG 57.106 30.769 28.42 24.11 46.07 3.07
3310 3531 8.726068 TGCATTTTTCGACTTATAAGTTGATGA 58.274 29.630 28.42 19.82 46.07 2.92
3311 3532 9.000018 GCATTTTTCGACTTATAAGTTGATGAC 58.000 33.333 28.42 17.76 46.07 3.06
3327 3548 8.871686 AGTTGATGACTTATTTGAAACCAAAC 57.128 30.769 0.00 0.00 34.13 2.93
3328 3549 8.474025 AGTTGATGACTTATTTGAAACCAAACA 58.526 29.630 0.00 0.00 34.13 2.83
3329 3550 8.755018 GTTGATGACTTATTTGAAACCAAACAG 58.245 33.333 0.00 0.00 36.48 3.16
3330 3551 7.432869 TGATGACTTATTTGAAACCAAACAGG 58.567 34.615 0.00 0.00 45.67 4.00
3331 3552 6.155475 TGACTTATTTGAAACCAAACAGGG 57.845 37.500 0.00 0.00 43.89 4.45
3332 3553 4.956085 ACTTATTTGAAACCAAACAGGGC 58.044 39.130 0.00 0.00 43.89 5.19
3333 3554 2.928801 ATTTGAAACCAAACAGGGCC 57.071 45.000 0.00 0.00 43.89 5.80
3377 3598 3.354089 ACTTGTCGAAATTGCCAACAG 57.646 42.857 0.00 0.00 0.00 3.16
3394 3615 4.445385 CCAACAGCAAAGTCATAAAGTTGC 59.555 41.667 0.00 0.00 45.29 4.17
3439 3684 4.641989 GCATATGGAATGTTGAGACCTGTT 59.358 41.667 4.56 0.00 0.00 3.16
3445 3690 4.695928 GGAATGTTGAGACCTGTTAAGTCC 59.304 45.833 0.00 0.00 34.67 3.85
3469 3714 4.519540 AAGCGCCTTTTGTCATTGTTAT 57.480 36.364 2.29 0.00 0.00 1.89
3470 3715 5.637006 AAGCGCCTTTTGTCATTGTTATA 57.363 34.783 2.29 0.00 0.00 0.98
3482 3727 3.805422 TCATTGTTATAATCGCGGGTCAC 59.195 43.478 6.13 0.00 0.00 3.67
3488 3733 1.331399 TAATCGCGGGTCACCATGGA 61.331 55.000 21.47 0.00 36.13 3.41
3541 3808 7.569043 GCGAAAACAAAGGTAGAGTAGAACTTC 60.569 40.741 0.00 0.00 0.00 3.01
3542 3809 7.358187 CGAAAACAAAGGTAGAGTAGAACTTCG 60.358 40.741 0.00 0.00 0.00 3.79
3543 3810 6.645790 AACAAAGGTAGAGTAGAACTTCGA 57.354 37.500 0.00 0.00 0.00 3.71
3544 3811 6.256912 ACAAAGGTAGAGTAGAACTTCGAG 57.743 41.667 0.00 0.00 0.00 4.04
3545 3812 5.183522 ACAAAGGTAGAGTAGAACTTCGAGG 59.816 44.000 0.00 0.00 0.00 4.63
3546 3813 3.281158 AGGTAGAGTAGAACTTCGAGGC 58.719 50.000 0.00 0.00 0.00 4.70
3547 3814 3.015327 GGTAGAGTAGAACTTCGAGGCA 58.985 50.000 0.00 0.00 0.00 4.75
3548 3815 3.633065 GGTAGAGTAGAACTTCGAGGCAT 59.367 47.826 0.00 0.00 0.00 4.40
3549 3816 3.791973 AGAGTAGAACTTCGAGGCATG 57.208 47.619 0.00 0.00 0.00 4.06
3550 3817 2.159170 AGAGTAGAACTTCGAGGCATGC 60.159 50.000 9.90 9.90 0.00 4.06
3551 3818 1.550524 AGTAGAACTTCGAGGCATGCA 59.449 47.619 21.36 0.00 0.00 3.96
3552 3819 2.169352 AGTAGAACTTCGAGGCATGCAT 59.831 45.455 21.36 13.78 0.00 3.96
3568 3835 1.066502 TGCATTAGTCTAAGCACGGCA 60.067 47.619 10.74 6.96 31.05 5.69
3569 3836 1.594862 GCATTAGTCTAAGCACGGCAG 59.405 52.381 0.00 0.00 0.00 4.85
3570 3837 2.893637 CATTAGTCTAAGCACGGCAGT 58.106 47.619 0.00 0.00 0.00 4.40
3571 3838 3.737047 GCATTAGTCTAAGCACGGCAGTA 60.737 47.826 0.00 0.00 0.00 2.74
3572 3839 3.777465 TTAGTCTAAGCACGGCAGTAG 57.223 47.619 0.00 0.89 0.00 2.57
3573 3840 1.546961 AGTCTAAGCACGGCAGTAGT 58.453 50.000 0.00 0.00 0.00 2.73
3574 3841 2.719739 AGTCTAAGCACGGCAGTAGTA 58.280 47.619 0.00 0.00 0.00 1.82
3575 3842 3.288964 AGTCTAAGCACGGCAGTAGTAT 58.711 45.455 0.00 0.00 0.00 2.12
3576 3843 3.700038 AGTCTAAGCACGGCAGTAGTATT 59.300 43.478 0.00 0.00 0.00 1.89
3577 3844 4.885907 AGTCTAAGCACGGCAGTAGTATTA 59.114 41.667 0.00 0.00 0.00 0.98
3578 3845 4.974888 GTCTAAGCACGGCAGTAGTATTAC 59.025 45.833 0.00 0.00 0.00 1.89
3591 3858 6.460676 GCAGTAGTATTACGTACATCAGGGTT 60.461 42.308 0.00 0.00 35.67 4.11
3615 3882 0.811281 GCAGGTGTTGATGCTTACCC 59.189 55.000 0.00 0.00 39.38 3.69
3619 3886 2.108250 AGGTGTTGATGCTTACCCACTT 59.892 45.455 0.00 0.00 33.67 3.16
3620 3887 2.488153 GGTGTTGATGCTTACCCACTTC 59.512 50.000 0.00 0.00 0.00 3.01
3621 3888 3.146066 GTGTTGATGCTTACCCACTTCA 58.854 45.455 0.00 0.00 0.00 3.02
3622 3889 3.758554 GTGTTGATGCTTACCCACTTCAT 59.241 43.478 0.00 0.00 0.00 2.57
3623 3890 4.009675 TGTTGATGCTTACCCACTTCATC 58.990 43.478 0.00 0.00 35.40 2.92
3625 3892 4.574674 TGATGCTTACCCACTTCATCTT 57.425 40.909 0.00 0.00 35.74 2.40
3626 3893 5.692115 TGATGCTTACCCACTTCATCTTA 57.308 39.130 0.00 0.00 35.74 2.10
3638 3905 6.946009 CCCACTTCATCTTAAAAGGGAAGTAA 59.054 38.462 20.31 0.00 43.02 2.24
3640 3907 9.681062 CCACTTCATCTTAAAAGGGAAGTAATA 57.319 33.333 20.31 0.00 43.02 0.98
3644 3911 9.920946 TTCATCTTAAAAGGGAAGTAATATGCT 57.079 29.630 0.00 0.00 0.00 3.79
3692 3969 0.108992 CGCGACAGGCTTAGTTGGTA 60.109 55.000 0.00 0.00 40.44 3.25
3694 3971 1.641577 CGACAGGCTTAGTTGGTAGC 58.358 55.000 0.00 0.00 36.66 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.426980 TTCACGCGAGAAACTTATAGTCTA 57.573 37.500 15.93 0.00 0.00 2.59
3 4 4.959596 TCACGCGAGAAACTTATAGTCT 57.040 40.909 15.93 0.00 0.00 3.24
4 5 6.385537 TTTTCACGCGAGAAACTTATAGTC 57.614 37.500 27.44 0.00 37.24 2.59
5 6 6.774354 TTTTTCACGCGAGAAACTTATAGT 57.226 33.333 27.44 0.00 37.24 2.12
25 26 7.017850 TCTGTAAGGGTCCCTAGTACAATTTTT 59.982 37.037 19.05 0.63 29.74 1.94
26 27 6.502863 TCTGTAAGGGTCCCTAGTACAATTTT 59.497 38.462 19.05 1.10 29.74 1.82
27 28 6.027482 TCTGTAAGGGTCCCTAGTACAATTT 58.973 40.000 19.05 1.76 29.74 1.82
28 29 5.596763 TCTGTAAGGGTCCCTAGTACAATT 58.403 41.667 19.05 2.41 29.74 2.32
29 30 5.209659 CTCTGTAAGGGTCCCTAGTACAAT 58.790 45.833 19.05 3.08 29.74 2.71
30 31 4.607239 CTCTGTAAGGGTCCCTAGTACAA 58.393 47.826 19.05 11.54 29.74 2.41
31 32 4.246712 CTCTGTAAGGGTCCCTAGTACA 57.753 50.000 17.95 17.95 31.13 2.90
42 43 7.523380 CGTCACCCTAATAATACTCTGTAAGGG 60.523 44.444 2.53 2.53 46.55 3.95
43 44 7.230108 TCGTCACCCTAATAATACTCTGTAAGG 59.770 40.741 0.00 0.00 0.00 2.69
44 45 8.162878 TCGTCACCCTAATAATACTCTGTAAG 57.837 38.462 0.00 0.00 0.00 2.34
45 46 8.701908 ATCGTCACCCTAATAATACTCTGTAA 57.298 34.615 0.00 0.00 0.00 2.41
46 47 7.118825 CGATCGTCACCCTAATAATACTCTGTA 59.881 40.741 7.03 0.00 0.00 2.74
47 48 6.072618 CGATCGTCACCCTAATAATACTCTGT 60.073 42.308 7.03 0.00 0.00 3.41
48 49 6.148976 TCGATCGTCACCCTAATAATACTCTG 59.851 42.308 15.94 0.00 0.00 3.35
49 50 6.236409 TCGATCGTCACCCTAATAATACTCT 58.764 40.000 15.94 0.00 0.00 3.24
50 51 6.492007 TCGATCGTCACCCTAATAATACTC 57.508 41.667 15.94 0.00 0.00 2.59
51 52 5.106237 GCTCGATCGTCACCCTAATAATACT 60.106 44.000 15.94 0.00 0.00 2.12
52 53 5.094134 GCTCGATCGTCACCCTAATAATAC 58.906 45.833 15.94 0.00 0.00 1.89
53 54 4.142752 CGCTCGATCGTCACCCTAATAATA 60.143 45.833 15.94 0.00 0.00 0.98
54 55 3.366070 CGCTCGATCGTCACCCTAATAAT 60.366 47.826 15.94 0.00 0.00 1.28
55 56 2.031420 CGCTCGATCGTCACCCTAATAA 60.031 50.000 15.94 0.00 0.00 1.40
56 57 1.534163 CGCTCGATCGTCACCCTAATA 59.466 52.381 15.94 0.00 0.00 0.98
57 58 0.311165 CGCTCGATCGTCACCCTAAT 59.689 55.000 15.94 0.00 0.00 1.73
58 59 1.028330 ACGCTCGATCGTCACCCTAA 61.028 55.000 15.94 0.00 38.44 2.69
59 60 1.028330 AACGCTCGATCGTCACCCTA 61.028 55.000 15.35 0.00 42.46 3.53
60 61 2.341101 AACGCTCGATCGTCACCCT 61.341 57.895 15.35 0.00 42.46 4.34
61 62 2.158959 CAACGCTCGATCGTCACCC 61.159 63.158 15.35 0.00 42.46 4.61
62 63 1.007336 AACAACGCTCGATCGTCACC 61.007 55.000 15.35 1.29 42.46 4.02
63 64 0.091344 CAACAACGCTCGATCGTCAC 59.909 55.000 15.35 4.91 42.46 3.67
64 65 1.614227 GCAACAACGCTCGATCGTCA 61.614 55.000 15.35 0.00 42.46 4.35
65 66 1.057361 GCAACAACGCTCGATCGTC 59.943 57.895 15.35 7.49 42.46 4.20
66 67 2.380410 GGCAACAACGCTCGATCGT 61.380 57.895 15.94 8.75 45.58 3.73
67 68 2.395690 GGCAACAACGCTCGATCG 59.604 61.111 9.36 9.36 0.00 3.69
68 69 2.395690 CGGCAACAACGCTCGATC 59.604 61.111 0.00 0.00 0.00 3.69
75 76 1.001745 GCTTAAAGGCGGCAACAACG 61.002 55.000 13.08 0.00 0.00 4.10
76 77 0.666274 GGCTTAAAGGCGGCAACAAC 60.666 55.000 13.08 0.00 0.00 3.32
77 78 0.825840 AGGCTTAAAGGCGGCAACAA 60.826 50.000 13.08 0.00 46.58 2.83
78 79 0.825840 AAGGCTTAAAGGCGGCAACA 60.826 50.000 13.08 0.00 46.58 3.33
79 80 0.109272 GAAGGCTTAAAGGCGGCAAC 60.109 55.000 13.08 0.00 46.58 4.17
80 81 0.538516 TGAAGGCTTAAAGGCGGCAA 60.539 50.000 13.08 0.00 46.58 4.52
81 82 0.323360 ATGAAGGCTTAAAGGCGGCA 60.323 50.000 13.08 0.00 46.58 5.69
82 83 0.382158 GATGAAGGCTTAAAGGCGGC 59.618 55.000 0.00 0.00 46.58 6.53
83 84 1.943340 GAGATGAAGGCTTAAAGGCGG 59.057 52.381 0.00 0.00 46.58 6.13
84 85 2.611292 CTGAGATGAAGGCTTAAAGGCG 59.389 50.000 0.00 0.00 46.58 5.52
85 86 2.357323 GCTGAGATGAAGGCTTAAAGGC 59.643 50.000 0.00 0.00 41.73 4.35
86 87 3.614092 TGCTGAGATGAAGGCTTAAAGG 58.386 45.455 0.00 0.00 0.00 3.11
87 88 5.633830 TTTGCTGAGATGAAGGCTTAAAG 57.366 39.130 0.00 0.00 0.00 1.85
88 89 6.209192 TGATTTTGCTGAGATGAAGGCTTAAA 59.791 34.615 0.00 0.00 0.00 1.52
89 90 5.711506 TGATTTTGCTGAGATGAAGGCTTAA 59.288 36.000 0.00 0.00 0.00 1.85
90 91 5.255687 TGATTTTGCTGAGATGAAGGCTTA 58.744 37.500 0.00 0.00 0.00 3.09
91 92 4.084287 TGATTTTGCTGAGATGAAGGCTT 58.916 39.130 0.00 0.00 0.00 4.35
92 93 3.693807 TGATTTTGCTGAGATGAAGGCT 58.306 40.909 0.00 0.00 0.00 4.58
93 94 4.445452 TTGATTTTGCTGAGATGAAGGC 57.555 40.909 0.00 0.00 0.00 4.35
94 95 6.453092 AGTTTTGATTTTGCTGAGATGAAGG 58.547 36.000 0.00 0.00 0.00 3.46
95 96 7.437267 ACAAGTTTTGATTTTGCTGAGATGAAG 59.563 33.333 0.00 0.00 0.00 3.02
96 97 7.267128 ACAAGTTTTGATTTTGCTGAGATGAA 58.733 30.769 0.00 0.00 0.00 2.57
97 98 6.808829 ACAAGTTTTGATTTTGCTGAGATGA 58.191 32.000 0.00 0.00 0.00 2.92
98 99 7.473027 AACAAGTTTTGATTTTGCTGAGATG 57.527 32.000 0.00 0.00 0.00 2.90
99 100 9.598517 TTTAACAAGTTTTGATTTTGCTGAGAT 57.401 25.926 0.00 0.00 0.00 2.75
100 101 8.994429 TTTAACAAGTTTTGATTTTGCTGAGA 57.006 26.923 0.00 0.00 0.00 3.27
101 102 9.476761 GTTTTAACAAGTTTTGATTTTGCTGAG 57.523 29.630 0.00 0.00 0.00 3.35
102 103 8.447053 GGTTTTAACAAGTTTTGATTTTGCTGA 58.553 29.630 0.00 0.00 0.00 4.26
103 104 7.696035 GGGTTTTAACAAGTTTTGATTTTGCTG 59.304 33.333 0.00 0.00 0.00 4.41
104 105 7.391833 TGGGTTTTAACAAGTTTTGATTTTGCT 59.608 29.630 0.00 0.00 0.00 3.91
105 106 7.530863 TGGGTTTTAACAAGTTTTGATTTTGC 58.469 30.769 0.00 0.00 0.00 3.68
106 107 9.899226 TTTGGGTTTTAACAAGTTTTGATTTTG 57.101 25.926 0.00 0.00 0.00 2.44
109 110 9.454859 TCATTTGGGTTTTAACAAGTTTTGATT 57.545 25.926 0.00 0.00 0.00 2.57
110 111 9.625747 ATCATTTGGGTTTTAACAAGTTTTGAT 57.374 25.926 0.00 0.00 0.00 2.57
114 115 9.758651 GAGTATCATTTGGGTTTTAACAAGTTT 57.241 29.630 0.00 0.00 33.17 2.66
115 116 8.919145 TGAGTATCATTTGGGTTTTAACAAGTT 58.081 29.630 0.00 0.00 42.56 2.66
116 117 8.472007 TGAGTATCATTTGGGTTTTAACAAGT 57.528 30.769 0.00 0.00 42.56 3.16
137 138 3.081061 TCTTTTATTGCCACGCATGAGT 58.919 40.909 0.00 0.00 38.76 3.41
139 140 4.217334 TCTTTCTTTTATTGCCACGCATGA 59.783 37.500 0.00 0.00 38.76 3.07
307 324 1.679311 GGCCCATGTGTCAGTGAGA 59.321 57.895 0.00 0.00 0.00 3.27
396 421 3.207778 ACCAACAAAAGGAAACGATCGA 58.792 40.909 24.34 0.00 0.00 3.59
397 422 3.619233 ACCAACAAAAGGAAACGATCG 57.381 42.857 14.88 14.88 0.00 3.69
398 423 4.026062 GCAAACCAACAAAAGGAAACGATC 60.026 41.667 0.00 0.00 0.00 3.69
399 424 3.868661 GCAAACCAACAAAAGGAAACGAT 59.131 39.130 0.00 0.00 0.00 3.73
534 559 1.689273 AGGATGGATGTAGAAGACGGC 59.311 52.381 0.00 0.00 0.00 5.68
536 561 3.243907 GGGAAGGATGGATGTAGAAGACG 60.244 52.174 0.00 0.00 0.00 4.18
541 566 1.717032 CGGGGAAGGATGGATGTAGA 58.283 55.000 0.00 0.00 0.00 2.59
544 569 2.757124 GCCGGGGAAGGATGGATGT 61.757 63.158 2.18 0.00 0.00 3.06
573 598 0.753111 AAATGGCGGAGAAGATGGGC 60.753 55.000 0.00 0.00 0.00 5.36
604 629 1.340502 CCTGCTTCCTTCCTTCCTTCC 60.341 57.143 0.00 0.00 0.00 3.46
610 635 1.501654 GGGTCCCTGCTTCCTTCCTT 61.502 60.000 0.00 0.00 0.00 3.36
661 710 2.673258 TGGGGGAGGAAGAAACAAAAC 58.327 47.619 0.00 0.00 0.00 2.43
685 734 1.384191 CAGACCAAAAGGGGAGGGG 59.616 63.158 0.00 0.00 42.91 4.79
693 742 4.766891 AGAGAGAGAGAGACAGACCAAAAG 59.233 45.833 0.00 0.00 0.00 2.27
698 747 2.643551 CCAGAGAGAGAGAGACAGACC 58.356 57.143 0.00 0.00 0.00 3.85
699 748 2.026262 ACCCAGAGAGAGAGAGACAGAC 60.026 54.545 0.00 0.00 0.00 3.51
835 900 0.392998 TTGAATTCAGAGCGCTCCCC 60.393 55.000 32.94 15.85 0.00 4.81
839 904 2.421424 GTGGATTTGAATTCAGAGCGCT 59.579 45.455 11.27 11.27 0.00 5.92
840 905 2.162208 TGTGGATTTGAATTCAGAGCGC 59.838 45.455 8.41 0.00 0.00 5.92
841 906 3.725895 CGTGTGGATTTGAATTCAGAGCG 60.726 47.826 8.41 3.20 0.00 5.03
843 908 3.426695 GGCGTGTGGATTTGAATTCAGAG 60.427 47.826 8.41 0.00 0.00 3.35
844 909 2.487762 GGCGTGTGGATTTGAATTCAGA 59.512 45.455 8.41 4.49 0.00 3.27
845 910 2.728846 CGGCGTGTGGATTTGAATTCAG 60.729 50.000 8.41 0.00 0.00 3.02
846 911 1.198867 CGGCGTGTGGATTTGAATTCA 59.801 47.619 3.38 3.38 0.00 2.57
896 970 1.081242 GTGATTGTGCTTGTGCGGG 60.081 57.895 0.00 0.00 43.34 6.13
903 977 1.147817 AGGGGGAAAGTGATTGTGCTT 59.852 47.619 0.00 0.00 0.00 3.91
911 985 1.227249 TGGTGAAAGGGGGAAAGTGA 58.773 50.000 0.00 0.00 0.00 3.41
915 989 0.486879 AGCATGGTGAAAGGGGGAAA 59.513 50.000 0.00 0.00 0.00 3.13
918 992 1.380380 GGAGCATGGTGAAAGGGGG 60.380 63.158 0.00 0.00 0.00 5.40
919 993 0.394899 GAGGAGCATGGTGAAAGGGG 60.395 60.000 0.00 0.00 0.00 4.79
920 994 0.394899 GGAGGAGCATGGTGAAAGGG 60.395 60.000 0.00 0.00 0.00 3.95
921 995 0.329261 TGGAGGAGCATGGTGAAAGG 59.671 55.000 0.00 0.00 0.00 3.11
922 996 2.426024 CAATGGAGGAGCATGGTGAAAG 59.574 50.000 0.00 0.00 0.00 2.62
923 997 2.449464 CAATGGAGGAGCATGGTGAAA 58.551 47.619 0.00 0.00 0.00 2.69
924 998 1.956636 GCAATGGAGGAGCATGGTGAA 60.957 52.381 0.00 0.00 0.00 3.18
925 999 0.394762 GCAATGGAGGAGCATGGTGA 60.395 55.000 0.00 0.00 0.00 4.02
926 1000 0.395311 AGCAATGGAGGAGCATGGTG 60.395 55.000 0.00 0.00 0.00 4.17
927 1001 1.142465 CTAGCAATGGAGGAGCATGGT 59.858 52.381 0.00 0.00 0.00 3.55
928 1002 1.893544 CTAGCAATGGAGGAGCATGG 58.106 55.000 0.00 0.00 0.00 3.66
929 1003 1.202782 AGCTAGCAATGGAGGAGCATG 60.203 52.381 18.83 0.00 35.55 4.06
930 1004 1.138568 AGCTAGCAATGGAGGAGCAT 58.861 50.000 18.83 0.00 35.55 3.79
931 1005 1.690893 CTAGCTAGCAATGGAGGAGCA 59.309 52.381 18.83 0.00 35.55 4.26
932 1006 2.453983 CTAGCTAGCAATGGAGGAGC 57.546 55.000 18.83 0.00 0.00 4.70
948 1022 2.611225 AAGAAAGATGGGCTCGCTAG 57.389 50.000 0.00 0.00 0.00 3.42
949 1023 2.501723 AGAAAGAAAGATGGGCTCGCTA 59.498 45.455 0.00 0.00 0.00 4.26
950 1024 1.280421 AGAAAGAAAGATGGGCTCGCT 59.720 47.619 0.00 0.00 0.00 4.93
951 1025 1.668237 GAGAAAGAAAGATGGGCTCGC 59.332 52.381 0.00 0.00 0.00 5.03
952 1026 2.935201 CAGAGAAAGAAAGATGGGCTCG 59.065 50.000 0.00 0.00 0.00 5.03
953 1027 3.277715 CCAGAGAAAGAAAGATGGGCTC 58.722 50.000 0.00 0.00 0.00 4.70
954 1028 2.646798 ACCAGAGAAAGAAAGATGGGCT 59.353 45.455 0.00 0.00 31.95 5.19
955 1029 3.013219 GACCAGAGAAAGAAAGATGGGC 58.987 50.000 0.00 0.00 31.95 5.36
956 1030 3.009473 TGGACCAGAGAAAGAAAGATGGG 59.991 47.826 0.00 0.00 31.95 4.00
957 1031 4.260170 CTGGACCAGAGAAAGAAAGATGG 58.740 47.826 17.22 0.00 32.44 3.51
958 1032 4.260170 CCTGGACCAGAGAAAGAAAGATG 58.740 47.826 23.77 0.00 32.44 2.90
959 1033 3.913163 ACCTGGACCAGAGAAAGAAAGAT 59.087 43.478 23.77 0.00 32.44 2.40
960 1034 3.318313 ACCTGGACCAGAGAAAGAAAGA 58.682 45.455 23.77 0.00 32.44 2.52
961 1035 3.669536 GACCTGGACCAGAGAAAGAAAG 58.330 50.000 23.77 5.09 32.44 2.62
962 1036 2.037251 CGACCTGGACCAGAGAAAGAAA 59.963 50.000 23.77 0.00 32.44 2.52
963 1037 1.618837 CGACCTGGACCAGAGAAAGAA 59.381 52.381 23.77 0.00 32.44 2.52
964 1038 1.257743 CGACCTGGACCAGAGAAAGA 58.742 55.000 23.77 0.00 32.44 2.52
965 1039 0.969894 ACGACCTGGACCAGAGAAAG 59.030 55.000 23.77 8.09 32.44 2.62
966 1040 0.966920 GACGACCTGGACCAGAGAAA 59.033 55.000 23.77 0.00 32.44 2.52
967 1041 0.898789 GGACGACCTGGACCAGAGAA 60.899 60.000 23.77 0.00 32.44 2.87
968 1042 1.304217 GGACGACCTGGACCAGAGA 60.304 63.158 23.77 0.00 32.44 3.10
969 1043 1.606601 TGGACGACCTGGACCAGAG 60.607 63.158 23.77 14.89 37.04 3.35
970 1044 1.906824 GTGGACGACCTGGACCAGA 60.907 63.158 23.77 0.00 37.04 3.86
971 1045 2.657237 GTGGACGACCTGGACCAG 59.343 66.667 15.15 15.15 37.04 4.00
972 1046 2.695520 TACGTGGACGACCTGGACCA 62.696 60.000 6.12 0.00 43.02 4.02
973 1047 1.930908 CTACGTGGACGACCTGGACC 61.931 65.000 6.12 0.00 43.02 4.46
974 1048 1.505353 CTACGTGGACGACCTGGAC 59.495 63.158 6.12 0.00 43.02 4.02
975 1049 1.676635 CCTACGTGGACGACCTGGA 60.677 63.158 6.12 0.00 43.02 3.86
976 1050 2.707849 CCCTACGTGGACGACCTGG 61.708 68.421 6.12 0.00 43.02 4.45
977 1051 1.654954 CTCCCTACGTGGACGACCTG 61.655 65.000 6.12 0.31 43.02 4.00
978 1052 1.378250 CTCCCTACGTGGACGACCT 60.378 63.158 6.12 0.00 43.02 3.85
979 1053 2.413142 CCTCCCTACGTGGACGACC 61.413 68.421 6.12 0.00 43.02 4.79
980 1054 3.061260 GCCTCCCTACGTGGACGAC 62.061 68.421 6.12 0.00 43.02 4.34
981 1055 2.753043 GCCTCCCTACGTGGACGA 60.753 66.667 6.12 0.00 43.02 4.20
982 1056 3.834799 GGCCTCCCTACGTGGACG 61.835 72.222 0.00 0.00 46.33 4.79
983 1057 2.064581 ATGGCCTCCCTACGTGGAC 61.065 63.158 3.32 0.00 38.35 4.02
984 1058 2.063979 CATGGCCTCCCTACGTGGA 61.064 63.158 3.32 0.00 38.35 4.02
985 1059 2.505982 CATGGCCTCCCTACGTGG 59.494 66.667 3.32 0.00 0.00 4.94
986 1060 2.367202 ACCATGGCCTCCCTACGTG 61.367 63.158 13.04 0.00 0.00 4.49
987 1061 2.040606 ACCATGGCCTCCCTACGT 59.959 61.111 13.04 0.00 0.00 3.57
988 1062 2.505982 CACCATGGCCTCCCTACG 59.494 66.667 13.04 0.00 0.00 3.51
989 1063 2.919043 CCACCATGGCCTCCCTAC 59.081 66.667 13.04 0.00 0.00 3.18
1402 1476 3.162154 GAAGGGGTAGGCCGAGGG 61.162 72.222 0.00 0.00 34.97 4.30
1623 1697 3.706373 GTCCAGCCCCAGAGCGAA 61.706 66.667 0.00 0.00 38.01 4.70
1728 1802 0.321996 AAACAAGGAGGAGGTCGAGC 59.678 55.000 6.48 6.48 0.00 5.03
1795 1872 2.743928 CTGCCGGCTGTTCTGGTC 60.744 66.667 29.70 0.00 43.46 4.02
1893 1970 3.744719 TTCGACCGGAGCCGACTG 61.745 66.667 9.46 0.00 42.83 3.51
2088 2165 4.063529 CCGTTCTTGGCTGCTTCA 57.936 55.556 0.00 0.00 0.00 3.02
2286 2363 1.381928 GCATCCCGTAGAGGTCGTCA 61.382 60.000 0.00 0.00 38.74 4.35
2370 2447 3.114616 CAGTCGTGCGCCAGGAAG 61.115 66.667 4.18 0.00 30.04 3.46
2522 2605 2.959372 GCAGCAGCAGCACATTGA 59.041 55.556 4.63 0.00 45.49 2.57
2550 2633 1.894756 CTTGTCCCGGTCGGCAAAA 60.895 57.895 0.00 0.00 30.44 2.44
2553 2636 3.998672 GTCTTGTCCCGGTCGGCA 61.999 66.667 0.00 0.00 0.00 5.69
2701 2784 1.340308 TGCTTGCTACTGATGCATGGT 60.340 47.619 2.46 5.47 40.34 3.55
2722 2805 3.365064 GGAGAACGAAAAACCTTGCTAGC 60.365 47.826 8.10 8.10 0.00 3.42
2738 2825 9.755804 AAAAAGAAAGAAATCATCAAGGAGAAC 57.244 29.630 0.00 0.00 0.00 3.01
2873 2961 3.645212 TGATCTCATCTCATCCCTGAACC 59.355 47.826 0.00 0.00 0.00 3.62
2874 2962 4.952071 TGATCTCATCTCATCCCTGAAC 57.048 45.455 0.00 0.00 0.00 3.18
2959 3069 3.703052 GGCCTGATTTCAACCATGAATCT 59.297 43.478 0.00 0.00 44.70 2.40
2964 3074 2.449464 TGAGGCCTGATTTCAACCATG 58.551 47.619 12.00 0.00 0.00 3.66
2965 3075 2.905415 TGAGGCCTGATTTCAACCAT 57.095 45.000 12.00 0.00 0.00 3.55
2995 3105 7.037586 ACAGTTTGGATAAATTCACCTCCTCTA 60.038 37.037 0.00 0.00 0.00 2.43
3031 3146 9.561069 AATTAGATTGGGAGACATATGTACAAC 57.439 33.333 8.71 0.90 0.00 3.32
3059 3174 7.940137 ACCGAACATGCCCATAGTATATTAAAA 59.060 33.333 0.00 0.00 0.00 1.52
3063 3284 5.499004 ACCGAACATGCCCATAGTATATT 57.501 39.130 0.00 0.00 0.00 1.28
3064 3285 5.488341 GAACCGAACATGCCCATAGTATAT 58.512 41.667 0.00 0.00 0.00 0.86
3065 3286 4.262721 GGAACCGAACATGCCCATAGTATA 60.263 45.833 0.00 0.00 0.00 1.47
3066 3287 3.496160 GGAACCGAACATGCCCATAGTAT 60.496 47.826 0.00 0.00 0.00 2.12
3068 3289 1.408266 GGAACCGAACATGCCCATAGT 60.408 52.381 0.00 0.00 0.00 2.12
3074 3295 3.859411 TTTATTGGAACCGAACATGCC 57.141 42.857 0.00 0.00 0.00 4.40
3075 3296 4.798387 GTGATTTATTGGAACCGAACATGC 59.202 41.667 0.00 0.00 0.00 4.06
3077 3298 5.125417 CAGGTGATTTATTGGAACCGAACAT 59.875 40.000 0.00 0.00 35.99 2.71
3078 3299 4.457603 CAGGTGATTTATTGGAACCGAACA 59.542 41.667 0.00 0.00 35.99 3.18
3079 3300 4.698304 TCAGGTGATTTATTGGAACCGAAC 59.302 41.667 0.00 0.00 35.99 3.95
3083 3304 7.881775 ATAAGTCAGGTGATTTATTGGAACC 57.118 36.000 2.72 0.00 34.59 3.62
3110 3331 7.426929 AGTCACTGATTTTAAGTCACATGAC 57.573 36.000 15.90 15.90 45.08 3.06
3132 3353 4.000988 CCAAACAGGCGTGACTTATAAGT 58.999 43.478 18.05 18.05 43.16 2.24
3133 3354 4.000988 ACCAAACAGGCGTGACTTATAAG 58.999 43.478 14.38 11.05 43.14 1.73
3134 3355 4.010667 ACCAAACAGGCGTGACTTATAA 57.989 40.909 14.38 0.00 43.14 0.98
3135 3356 3.688694 ACCAAACAGGCGTGACTTATA 57.311 42.857 14.38 0.00 43.14 0.98
3136 3357 2.552315 CAACCAAACAGGCGTGACTTAT 59.448 45.455 14.38 0.00 43.14 1.73
3137 3358 1.944024 CAACCAAACAGGCGTGACTTA 59.056 47.619 14.38 0.00 43.14 2.24
3140 3361 0.028902 GACAACCAAACAGGCGTGAC 59.971 55.000 14.38 0.00 43.14 3.67
3142 3363 0.667993 ATGACAACCAAACAGGCGTG 59.332 50.000 4.53 4.53 43.14 5.34
3144 3365 1.069022 CAGATGACAACCAAACAGGCG 60.069 52.381 0.00 0.00 43.14 5.52
3145 3366 2.030805 GTCAGATGACAACCAAACAGGC 60.031 50.000 8.09 0.00 44.18 4.85
3146 3367 2.554032 GGTCAGATGACAACCAAACAGG 59.446 50.000 14.52 0.00 46.47 4.00
3147 3368 3.003689 GTGGTCAGATGACAACCAAACAG 59.996 47.826 14.52 0.00 44.30 3.16
3148 3369 2.948979 GTGGTCAGATGACAACCAAACA 59.051 45.455 14.52 0.00 44.30 2.83
3149 3370 2.948979 TGTGGTCAGATGACAACCAAAC 59.051 45.455 16.10 5.13 46.03 2.93
3150 3371 2.948979 GTGTGGTCAGATGACAACCAAA 59.051 45.455 16.10 0.00 46.03 3.28
3152 3373 1.768275 AGTGTGGTCAGATGACAACCA 59.232 47.619 16.10 3.28 46.03 3.67
3153 3374 2.550830 AGTGTGGTCAGATGACAACC 57.449 50.000 16.10 8.80 46.03 3.77
3154 3375 4.900635 AAAAGTGTGGTCAGATGACAAC 57.099 40.909 12.69 12.69 46.62 3.32
3155 3376 4.946772 TGAAAAAGTGTGGTCAGATGACAA 59.053 37.500 14.52 0.21 46.47 3.18
3157 3378 4.261197 GGTGAAAAAGTGTGGTCAGATGAC 60.261 45.833 4.33 4.33 44.04 3.06
3158 3379 3.882888 GGTGAAAAAGTGTGGTCAGATGA 59.117 43.478 0.00 0.00 0.00 2.92
3159 3380 3.885297 AGGTGAAAAAGTGTGGTCAGATG 59.115 43.478 0.00 0.00 0.00 2.90
3160 3381 4.170468 AGGTGAAAAAGTGTGGTCAGAT 57.830 40.909 0.00 0.00 0.00 2.90
3162 3383 3.443681 ACAAGGTGAAAAAGTGTGGTCAG 59.556 43.478 0.00 0.00 0.00 3.51
3163 3384 3.426615 ACAAGGTGAAAAAGTGTGGTCA 58.573 40.909 0.00 0.00 0.00 4.02
3165 3386 4.882842 AAACAAGGTGAAAAAGTGTGGT 57.117 36.364 0.00 0.00 0.00 4.16
3166 3387 7.659652 TTAAAAACAAGGTGAAAAAGTGTGG 57.340 32.000 0.00 0.00 0.00 4.17
3186 3407 8.679100 CGTGGGTTTCATCACCTTTATATTAAA 58.321 33.333 0.00 0.00 36.97 1.52
3189 3410 6.184789 ACGTGGGTTTCATCACCTTTATATT 58.815 36.000 0.00 0.00 36.97 1.28
3191 3412 5.168647 ACGTGGGTTTCATCACCTTTATA 57.831 39.130 0.00 0.00 36.97 0.98
3194 3415 2.358322 ACGTGGGTTTCATCACCTTT 57.642 45.000 0.00 0.00 36.97 3.11
3195 3416 3.495434 TTACGTGGGTTTCATCACCTT 57.505 42.857 0.00 0.00 36.97 3.50
3196 3417 3.495434 TTTACGTGGGTTTCATCACCT 57.505 42.857 0.00 0.00 36.97 4.00
3197 3418 4.276431 TCTTTTTACGTGGGTTTCATCACC 59.724 41.667 0.00 0.00 35.88 4.02
3198 3419 5.427036 TCTTTTTACGTGGGTTTCATCAC 57.573 39.130 0.00 0.00 0.00 3.06
3199 3420 4.517453 CCTCTTTTTACGTGGGTTTCATCA 59.483 41.667 0.00 0.00 0.00 3.07
3200 3421 4.517832 ACCTCTTTTTACGTGGGTTTCATC 59.482 41.667 0.00 0.00 0.00 2.92
3202 3423 3.628487 CACCTCTTTTTACGTGGGTTTCA 59.372 43.478 0.00 0.00 0.00 2.69
3205 3426 3.118149 AGTCACCTCTTTTTACGTGGGTT 60.118 43.478 0.00 0.00 0.00 4.11
3207 3428 3.121738 AGTCACCTCTTTTTACGTGGG 57.878 47.619 0.00 0.00 0.00 4.61
3208 3429 7.601508 ACTTATAAGTCACCTCTTTTTACGTGG 59.398 37.037 12.50 0.00 32.86 4.94
3209 3430 8.530269 ACTTATAAGTCACCTCTTTTTACGTG 57.470 34.615 12.50 0.00 32.86 4.49
3219 3440 8.727910 CCCAACTTAAAACTTATAAGTCACCTC 58.272 37.037 18.28 0.00 41.49 3.85
3220 3441 7.668469 CCCCAACTTAAAACTTATAAGTCACCT 59.332 37.037 18.28 0.05 41.49 4.00
3222 3443 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
3223 3444 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
3226 3447 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
3227 3448 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
3228 3449 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
3229 3450 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
3230 3451 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
3231 3452 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
3232 3453 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
3233 3454 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
3234 3455 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
3235 3456 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
3236 3457 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
3237 3458 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
3238 3459 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
3239 3460 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
3240 3461 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
3241 3462 1.272425 CCATAAGTTGCTCCACCCCAA 60.272 52.381 0.00 0.00 0.00 4.12
3242 3463 0.331278 CCATAAGTTGCTCCACCCCA 59.669 55.000 0.00 0.00 0.00 4.96
3243 3464 1.037579 GCCATAAGTTGCTCCACCCC 61.038 60.000 0.00 0.00 0.00 4.95
3244 3465 0.034089 AGCCATAAGTTGCTCCACCC 60.034 55.000 0.00 0.00 30.33 4.61
3245 3466 1.839424 AAGCCATAAGTTGCTCCACC 58.161 50.000 0.00 0.00 36.66 4.61
3246 3467 6.305693 CTTATAAGCCATAAGTTGCTCCAC 57.694 41.667 0.00 0.00 40.84 4.02
3256 3477 5.718801 TCACCCCAACTTATAAGCCATAA 57.281 39.130 12.54 0.00 0.00 1.90
3257 3478 5.922960 ATCACCCCAACTTATAAGCCATA 57.077 39.130 12.54 0.00 0.00 2.74
3258 3479 4.814224 ATCACCCCAACTTATAAGCCAT 57.186 40.909 12.54 0.00 0.00 4.40
3259 3480 4.601406 AATCACCCCAACTTATAAGCCA 57.399 40.909 12.54 0.00 0.00 4.75
3260 3481 5.932619 AAAATCACCCCAACTTATAAGCC 57.067 39.130 12.54 0.00 0.00 4.35
3281 3502 9.737427 TCAACTTATAAGTCGAAAAATGCAAAA 57.263 25.926 18.28 0.00 38.57 2.44
3282 3503 9.906660 ATCAACTTATAAGTCGAAAAATGCAAA 57.093 25.926 18.28 0.00 38.57 3.68
3283 3504 9.340695 CATCAACTTATAAGTCGAAAAATGCAA 57.659 29.630 18.28 0.00 38.57 4.08
3284 3505 8.726068 TCATCAACTTATAAGTCGAAAAATGCA 58.274 29.630 18.28 0.00 38.57 3.96
3285 3506 9.000018 GTCATCAACTTATAAGTCGAAAAATGC 58.000 33.333 18.28 8.54 38.57 3.56
3301 3522 9.313118 GTTTGGTTTCAAATAAGTCATCAACTT 57.687 29.630 0.00 0.00 43.73 2.66
3302 3523 8.474025 TGTTTGGTTTCAAATAAGTCATCAACT 58.526 29.630 0.00 0.00 43.73 3.16
3303 3524 8.641499 TGTTTGGTTTCAAATAAGTCATCAAC 57.359 30.769 0.00 0.00 43.73 3.18
3304 3525 7.925483 CCTGTTTGGTTTCAAATAAGTCATCAA 59.075 33.333 0.00 0.00 43.73 2.57
3305 3526 7.432869 CCTGTTTGGTTTCAAATAAGTCATCA 58.567 34.615 0.00 0.00 43.73 3.07
3306 3527 6.868339 CCCTGTTTGGTTTCAAATAAGTCATC 59.132 38.462 0.00 0.00 43.73 2.92
3307 3528 6.741240 GCCCTGTTTGGTTTCAAATAAGTCAT 60.741 38.462 0.00 0.00 43.73 3.06
3308 3529 5.452636 GCCCTGTTTGGTTTCAAATAAGTCA 60.453 40.000 0.00 0.00 43.73 3.41
3309 3530 4.988540 GCCCTGTTTGGTTTCAAATAAGTC 59.011 41.667 0.00 0.00 43.73 3.01
3310 3531 4.202315 GGCCCTGTTTGGTTTCAAATAAGT 60.202 41.667 0.00 0.00 43.73 2.24
3311 3532 4.040339 AGGCCCTGTTTGGTTTCAAATAAG 59.960 41.667 0.00 0.00 43.73 1.73
3312 3533 3.970640 AGGCCCTGTTTGGTTTCAAATAA 59.029 39.130 0.00 0.00 43.73 1.40
3313 3534 3.582164 AGGCCCTGTTTGGTTTCAAATA 58.418 40.909 0.00 0.00 43.73 1.40
3314 3535 2.407562 AGGCCCTGTTTGGTTTCAAAT 58.592 42.857 0.00 0.00 43.73 2.32
3315 3536 1.872773 AGGCCCTGTTTGGTTTCAAA 58.127 45.000 0.00 0.00 40.23 2.69
3316 3537 2.757894 TAGGCCCTGTTTGGTTTCAA 57.242 45.000 0.00 0.00 0.00 2.69
3317 3538 2.990740 ATAGGCCCTGTTTGGTTTCA 57.009 45.000 0.00 0.00 0.00 2.69
3318 3539 6.016276 CACATATATAGGCCCTGTTTGGTTTC 60.016 42.308 0.00 0.00 0.00 2.78
3319 3540 5.833131 CACATATATAGGCCCTGTTTGGTTT 59.167 40.000 0.00 0.00 0.00 3.27
3320 3541 5.103686 ACACATATATAGGCCCTGTTTGGTT 60.104 40.000 0.00 0.00 0.00 3.67
3321 3542 4.415512 ACACATATATAGGCCCTGTTTGGT 59.584 41.667 0.00 0.00 0.00 3.67
3322 3543 4.761739 CACACATATATAGGCCCTGTTTGG 59.238 45.833 0.00 0.00 0.00 3.28
3323 3544 5.376625 ACACACATATATAGGCCCTGTTTG 58.623 41.667 0.00 0.19 0.00 2.93
3324 3545 5.131977 TGACACACATATATAGGCCCTGTTT 59.868 40.000 0.00 0.00 0.00 2.83
3325 3546 4.658435 TGACACACATATATAGGCCCTGTT 59.342 41.667 0.00 0.00 0.00 3.16
3326 3547 4.231273 TGACACACATATATAGGCCCTGT 58.769 43.478 0.00 0.00 0.00 4.00
3327 3548 4.890158 TGACACACATATATAGGCCCTG 57.110 45.455 0.00 0.00 0.00 4.45
3328 3549 4.160439 CGATGACACACATATATAGGCCCT 59.840 45.833 0.00 0.00 39.56 5.19
3329 3550 4.159693 TCGATGACACACATATATAGGCCC 59.840 45.833 0.00 0.00 39.56 5.80
3330 3551 5.324784 TCGATGACACACATATATAGGCC 57.675 43.478 0.00 0.00 39.56 5.19
3331 3552 6.156519 TGTTCGATGACACACATATATAGGC 58.843 40.000 0.00 0.00 39.56 3.93
3332 3553 8.487970 GTTTGTTCGATGACACACATATATAGG 58.512 37.037 2.43 0.00 39.56 2.57
3333 3554 9.249457 AGTTTGTTCGATGACACACATATATAG 57.751 33.333 8.73 0.00 39.56 1.31
3377 3598 7.365840 AGTAGTAGCAACTTTATGACTTTGC 57.634 36.000 0.00 0.00 43.85 3.68
3411 3656 6.554982 AGGTCTCAACATTCCATATGCTACTA 59.445 38.462 0.00 0.00 0.00 1.82
3412 3657 5.367937 AGGTCTCAACATTCCATATGCTACT 59.632 40.000 0.00 0.00 0.00 2.57
3413 3658 5.468072 CAGGTCTCAACATTCCATATGCTAC 59.532 44.000 0.00 0.00 0.00 3.58
3439 3684 1.611491 CAAAAGGCGCTTTGGGACTTA 59.389 47.619 5.18 0.00 43.08 2.24
3445 3690 1.794116 CAATGACAAAAGGCGCTTTGG 59.206 47.619 21.66 13.20 40.03 3.28
3469 3714 1.145156 CCATGGTGACCCGCGATTA 59.855 57.895 8.23 0.00 0.00 1.75
3470 3715 2.124736 CCATGGTGACCCGCGATT 60.125 61.111 8.23 0.00 0.00 3.34
3482 3727 4.816786 CTTTTTGGCAAAAGTTCCATGG 57.183 40.909 23.03 4.97 42.80 3.66
3541 3808 2.478134 GCTTAGACTAATGCATGCCTCG 59.522 50.000 16.68 3.49 0.00 4.63
3542 3809 3.249559 GTGCTTAGACTAATGCATGCCTC 59.750 47.826 16.68 1.87 37.76 4.70
3543 3810 3.209410 GTGCTTAGACTAATGCATGCCT 58.791 45.455 16.68 1.31 37.76 4.75
3544 3811 2.032549 CGTGCTTAGACTAATGCATGCC 60.033 50.000 16.68 0.00 37.76 4.40
3545 3812 2.032549 CCGTGCTTAGACTAATGCATGC 60.033 50.000 21.36 11.82 40.06 4.06
3546 3813 2.032549 GCCGTGCTTAGACTAATGCATG 60.033 50.000 20.56 20.56 40.79 4.06
3547 3814 2.213499 GCCGTGCTTAGACTAATGCAT 58.787 47.619 16.94 0.00 37.76 3.96
3548 3815 1.066502 TGCCGTGCTTAGACTAATGCA 60.067 47.619 12.49 12.49 0.00 3.96
3549 3816 1.594862 CTGCCGTGCTTAGACTAATGC 59.405 52.381 0.00 3.03 0.00 3.56
3550 3817 2.893637 ACTGCCGTGCTTAGACTAATG 58.106 47.619 0.00 0.00 0.00 1.90
3551 3818 3.700038 ACTACTGCCGTGCTTAGACTAAT 59.300 43.478 0.00 0.00 0.00 1.73
3552 3819 3.087031 ACTACTGCCGTGCTTAGACTAA 58.913 45.455 0.00 0.00 0.00 2.24
3568 3835 7.995488 ACTAACCCTGATGTACGTAATACTACT 59.005 37.037 0.00 0.00 34.56 2.57
3569 3836 8.159344 ACTAACCCTGATGTACGTAATACTAC 57.841 38.462 0.00 0.00 34.56 2.73
3570 3837 9.494271 CTACTAACCCTGATGTACGTAATACTA 57.506 37.037 0.00 0.00 34.56 1.82
3571 3838 7.040823 GCTACTAACCCTGATGTACGTAATACT 60.041 40.741 0.00 0.00 34.56 2.12
3572 3839 7.080724 GCTACTAACCCTGATGTACGTAATAC 58.919 42.308 0.00 0.00 0.00 1.89
3573 3840 6.772233 TGCTACTAACCCTGATGTACGTAATA 59.228 38.462 0.00 0.00 0.00 0.98
3574 3841 5.595542 TGCTACTAACCCTGATGTACGTAAT 59.404 40.000 0.00 0.00 0.00 1.89
3575 3842 4.949238 TGCTACTAACCCTGATGTACGTAA 59.051 41.667 0.00 0.00 0.00 3.18
3576 3843 4.525996 TGCTACTAACCCTGATGTACGTA 58.474 43.478 0.00 0.00 0.00 3.57
3577 3844 3.359033 TGCTACTAACCCTGATGTACGT 58.641 45.455 0.00 0.00 0.00 3.57
3578 3845 3.243434 CCTGCTACTAACCCTGATGTACG 60.243 52.174 0.00 0.00 0.00 3.67
3646 3913 9.976511 GCTTGGCTTTACGGTATATATATATGA 57.023 33.333 14.42 0.00 0.00 2.15
3647 3914 9.204570 GGCTTGGCTTTACGGTATATATATATG 57.795 37.037 14.42 4.92 0.00 1.78
3648 3915 8.086522 CGGCTTGGCTTTACGGTATATATATAT 58.913 37.037 10.10 10.10 0.00 0.86
3651 3918 5.653507 CGGCTTGGCTTTACGGTATATATA 58.346 41.667 0.00 0.00 0.00 0.86
3652 3919 4.501071 CGGCTTGGCTTTACGGTATATAT 58.499 43.478 0.00 0.00 0.00 0.86
3653 3920 3.861886 GCGGCTTGGCTTTACGGTATATA 60.862 47.826 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.