Multiple sequence alignment - TraesCS5A01G455700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G455700 chr5A 100.000 3709 0 0 1 3709 635961858 635965566 0.000000e+00 6850
1 TraesCS5A01G455700 chr5D 96.338 2922 70 23 1 2921 508626150 508629035 0.000000e+00 4769
2 TraesCS5A01G455700 chr5D 95.592 794 20 4 2919 3709 508629195 508629976 0.000000e+00 1258
3 TraesCS5A01G455700 chr5D 87.838 148 14 2 3462 3609 508719647 508719790 1.770000e-38 171
4 TraesCS5A01G455700 chr5B 93.769 674 36 6 333 1005 638468672 638468004 0.000000e+00 1007
5 TraesCS5A01G455700 chr5B 95.238 105 4 1 3451 3555 638464219 638464116 8.240000e-37 165
6 TraesCS5A01G455700 chr5B 86.992 123 5 6 3597 3709 638463997 638463876 1.080000e-25 128
7 TraesCS5A01G455700 chr5B 83.333 150 13 3 3457 3606 639417825 639417962 1.080000e-25 128
8 TraesCS5A01G455700 chr3A 86.127 173 16 7 3458 3626 427213257 427213425 2.940000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G455700 chr5A 635961858 635965566 3708 False 6850.000000 6850 100.000000 1 3709 1 chr5A.!!$F1 3708
1 TraesCS5A01G455700 chr5D 508626150 508629976 3826 False 3013.500000 4769 95.965000 1 3709 2 chr5D.!!$F2 3708
2 TraesCS5A01G455700 chr5B 638463876 638468672 4796 True 433.333333 1007 91.999667 333 3709 3 chr5B.!!$R1 3376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 412 1.542987 CCATTTTGTTTGGGGGCACAG 60.543 52.381 0.0 0.0 0.00 3.66 F
1152 3064 0.530870 GTCAAGTCGCAGGGATAGCC 60.531 60.000 0.0 0.0 0.00 3.93 F
2528 4915 0.530650 GATTGAGGCGATTGAGGCGA 60.531 55.000 0.0 0.0 41.99 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1297 3209 0.461693 GCACTGCACCTGAGGATCTC 60.462 60.000 4.99 0.00 34.92 2.75 R
2561 4948 0.389296 AAGCAAATAAAACCCGCGGC 60.389 50.000 22.85 3.71 0.00 6.53 R
3690 6389 1.384191 AGTTCACTGGGCCCCAATC 59.616 57.895 22.27 4.94 30.80 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 221 6.567687 TTTCATTCCAAAAACGAGCTATGA 57.432 33.333 0.00 0.00 0.00 2.15
231 232 1.860950 CGAGCTATGAAACCATCACCG 59.139 52.381 0.00 0.00 41.93 4.94
232 233 2.481276 CGAGCTATGAAACCATCACCGA 60.481 50.000 0.00 0.00 41.93 4.69
369 370 2.234908 CAGTGATCTTCCGAAACTCCCT 59.765 50.000 0.00 0.00 0.00 4.20
411 412 1.542987 CCATTTTGTTTGGGGGCACAG 60.543 52.381 0.00 0.00 0.00 3.66
435 436 4.240096 CAGCTTTCCAATTAACCAAGCAG 58.760 43.478 11.35 2.76 41.98 4.24
458 459 2.513897 CCCCATTTCCCTCGTCGC 60.514 66.667 0.00 0.00 0.00 5.19
605 606 3.500982 CAGGCACACCATTTGTAAATCG 58.499 45.455 0.00 0.00 35.67 3.34
703 704 7.628769 ATTTTGATGGAAAATGGTAAATGGC 57.371 32.000 0.00 0.00 41.79 4.40
704 705 6.371595 TTTGATGGAAAATGGTAAATGGCT 57.628 33.333 0.00 0.00 0.00 4.75
707 708 8.774546 TTGATGGAAAATGGTAAATGGCTATA 57.225 30.769 0.00 0.00 0.00 1.31
709 710 8.859090 TGATGGAAAATGGTAAATGGCTATAAG 58.141 33.333 0.00 0.00 0.00 1.73
712 713 7.147976 GGAAAATGGTAAATGGCTATAAGCAG 58.852 38.462 0.78 0.00 44.75 4.24
714 715 8.482852 AAAATGGTAAATGGCTATAAGCAGAT 57.517 30.769 0.78 0.00 44.75 2.90
716 717 6.882610 TGGTAAATGGCTATAAGCAGATTG 57.117 37.500 0.78 0.00 44.75 2.67
803 804 4.245660 CGGGCTGGTATTATGACTGTATG 58.754 47.826 0.00 0.00 0.00 2.39
1113 3025 1.421485 CCTTTCAACTAGCGCTGCG 59.579 57.895 22.90 19.17 0.00 5.18
1152 3064 0.530870 GTCAAGTCGCAGGGATAGCC 60.531 60.000 0.00 0.00 0.00 3.93
1226 3138 5.661056 TCTCGAATAGAAGCTTCTGGAAA 57.339 39.130 34.26 18.04 38.19 3.13
1269 3181 2.209064 TACTTGAGTCCGCCGCACTC 62.209 60.000 0.07 0.07 40.75 3.51
1284 3196 0.664466 CACTCGCACGAGAAGCTGAA 60.664 55.000 25.53 0.00 44.53 3.02
1297 3209 5.613358 AGAAGCTGAAAATGTAGGAAACG 57.387 39.130 0.00 0.00 0.00 3.60
1305 3217 6.106673 TGAAAATGTAGGAAACGAGATCCTC 58.893 40.000 10.80 5.51 44.01 3.71
1332 3244 1.963515 AGTGCCATTGACTTGGGAAAC 59.036 47.619 0.00 0.00 38.98 2.78
1368 3280 0.586319 TACAACTCGCTGCTTTGCAC 59.414 50.000 0.00 0.00 33.79 4.57
1548 3460 2.434702 CAGGGACAATACCTCTACCACC 59.565 54.545 0.00 0.00 35.78 4.61
1717 3652 9.760926 ATCTGCTTCTATCCTCATGTAGTAATA 57.239 33.333 0.00 0.00 0.00 0.98
1807 3742 6.917217 TGGTTGACAATTGAAAATTGGAAC 57.083 33.333 13.59 15.06 33.56 3.62
2098 4033 1.613437 GTGCCTTGCAGTTTGTATGGT 59.387 47.619 0.00 0.00 40.08 3.55
2163 4098 7.417612 CACTTGGCAATACTTGGTATGTTATC 58.582 38.462 0.00 0.00 0.00 1.75
2205 4140 8.965819 TCTCATGTTATTATGCTCTCTCTATCC 58.034 37.037 0.00 0.00 0.00 2.59
2206 4141 8.891985 TCATGTTATTATGCTCTCTCTATCCT 57.108 34.615 0.00 0.00 0.00 3.24
2207 4142 8.747471 TCATGTTATTATGCTCTCTCTATCCTG 58.253 37.037 0.00 0.00 0.00 3.86
2208 4143 7.473735 TGTTATTATGCTCTCTCTATCCTGG 57.526 40.000 0.00 0.00 0.00 4.45
2212 4147 6.602410 TTATGCTCTCTCTATCCTGGAATG 57.398 41.667 0.00 0.00 0.00 2.67
2213 4148 3.921104 TGCTCTCTCTATCCTGGAATGT 58.079 45.455 0.00 0.00 0.00 2.71
2214 4149 5.066913 TGCTCTCTCTATCCTGGAATGTA 57.933 43.478 0.00 0.00 0.00 2.29
2215 4150 5.458595 TGCTCTCTCTATCCTGGAATGTAA 58.541 41.667 0.00 0.00 0.00 2.41
2216 4151 5.538053 TGCTCTCTCTATCCTGGAATGTAAG 59.462 44.000 0.00 0.00 0.00 2.34
2217 4152 5.047377 GCTCTCTCTATCCTGGAATGTAAGG 60.047 48.000 0.00 0.00 34.65 2.69
2218 4153 4.835615 TCTCTCTATCCTGGAATGTAAGGC 59.164 45.833 0.00 0.00 33.25 4.35
2220 4155 2.037251 TCTATCCTGGAATGTAAGGCGC 59.963 50.000 0.00 0.00 33.25 6.53
2223 4158 1.765904 TCCTGGAATGTAAGGCGCATA 59.234 47.619 10.83 0.00 33.25 3.14
2225 4160 2.146342 CTGGAATGTAAGGCGCATAGG 58.854 52.381 10.83 0.00 0.00 2.57
2227 4162 2.371841 TGGAATGTAAGGCGCATAGGAT 59.628 45.455 10.83 0.00 0.00 3.24
2228 4163 3.003480 GGAATGTAAGGCGCATAGGATC 58.997 50.000 10.83 0.00 0.00 3.36
2229 4164 3.307059 GGAATGTAAGGCGCATAGGATCT 60.307 47.826 10.83 0.00 0.00 2.75
2230 4165 4.319177 GAATGTAAGGCGCATAGGATCTT 58.681 43.478 10.83 3.66 0.00 2.40
2411 4798 6.639632 AATTATGCGCCTTGTATTTCTGAT 57.360 33.333 4.18 0.00 0.00 2.90
2436 4823 4.978099 AGTGAGTATTAATGGATGCTGGG 58.022 43.478 0.00 0.00 0.00 4.45
2440 4827 6.016777 GTGAGTATTAATGGATGCTGGGAAAG 60.017 42.308 0.00 0.00 0.00 2.62
2512 4899 6.385176 TGTTCTCTCATTGGATACTGGAGATT 59.615 38.462 0.00 0.00 37.20 2.40
2528 4915 0.530650 GATTGAGGCGATTGAGGCGA 60.531 55.000 0.00 0.00 41.99 5.54
2561 4948 6.331369 TGAAATCTTTTCTTGGCCTTACAG 57.669 37.500 3.32 0.00 0.00 2.74
2848 5235 3.012934 ACAGCTGTGGGTTTTACTTGT 57.987 42.857 20.97 0.00 0.00 3.16
2881 5268 2.891580 TGTATGATTCTAGCCCTCGTCC 59.108 50.000 0.00 0.00 0.00 4.79
2882 5269 0.962489 ATGATTCTAGCCCTCGTCCG 59.038 55.000 0.00 0.00 0.00 4.79
2885 5272 0.106619 ATTCTAGCCCTCGTCCGTCT 60.107 55.000 0.00 0.00 0.00 4.18
2886 5273 0.323178 TTCTAGCCCTCGTCCGTCTT 60.323 55.000 0.00 0.00 0.00 3.01
2941 5490 8.943909 ACTACAAGATAAGCACTAATAACCAC 57.056 34.615 0.00 0.00 0.00 4.16
2951 5500 3.684788 CACTAATAACCACCTCTGCACAC 59.315 47.826 0.00 0.00 0.00 3.82
3239 5789 2.529780 TCTTTTGACTTTCGCCCGTA 57.470 45.000 0.00 0.00 0.00 4.02
3291 5843 3.756434 GGTGCTCCAGTGTTAATAAAGCA 59.244 43.478 0.00 0.00 36.04 3.91
3430 5982 2.281761 CAAACGTCTGCTGGGGCT 60.282 61.111 0.00 0.00 39.59 5.19
3488 6077 5.947566 GGTACTCACTAGTTCTTCCTCTTCT 59.052 44.000 0.00 0.00 37.15 2.85
3549 6138 0.179043 GAAGGGAAGAAGGGGATCGC 60.179 60.000 0.06 0.06 0.00 4.58
3550 6139 1.972660 AAGGGAAGAAGGGGATCGCG 61.973 60.000 0.00 0.00 0.00 5.87
3551 6140 2.432300 GGGAAGAAGGGGATCGCGA 61.432 63.158 13.09 13.09 0.00 5.87
3552 6141 1.068250 GGAAGAAGGGGATCGCGAG 59.932 63.158 16.66 0.00 0.00 5.03
3553 6142 1.592939 GAAGAAGGGGATCGCGAGC 60.593 63.158 17.58 17.58 0.00 5.03
3554 6143 2.298158 GAAGAAGGGGATCGCGAGCA 62.298 60.000 27.12 0.00 0.00 4.26
3555 6144 1.690219 AAGAAGGGGATCGCGAGCAT 61.690 55.000 27.12 8.50 0.00 3.79
3556 6145 0.827925 AGAAGGGGATCGCGAGCATA 60.828 55.000 27.12 0.00 0.00 3.14
3557 6146 0.389166 GAAGGGGATCGCGAGCATAG 60.389 60.000 27.12 0.00 0.00 2.23
3640 6329 2.023695 CCTTACCCACCTACCACTCCTA 60.024 54.545 0.00 0.00 0.00 2.94
3658 6350 6.210385 CACTCCTACTTATATCAGCCAGTCAT 59.790 42.308 0.00 0.00 0.00 3.06
3687 6386 2.749621 GTTGGGCTGAACATGTAAGAGG 59.250 50.000 11.65 0.00 0.00 3.69
3690 6389 1.009829 GCTGAACATGTAAGAGGCCG 58.990 55.000 11.65 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 221 4.695455 CACAATTACTCTCGGTGATGGTTT 59.305 41.667 0.00 0.00 27.18 3.27
231 232 2.813754 TGCTTGCACCACAATTACTCTC 59.186 45.455 0.00 0.00 37.72 3.20
232 233 2.816087 CTGCTTGCACCACAATTACTCT 59.184 45.455 0.00 0.00 37.72 3.24
369 370 6.576360 TGGTGGACTGGGTATAATGGATATA 58.424 40.000 0.00 0.00 0.00 0.86
411 412 4.237724 GCTTGGTTAATTGGAAAGCTGTC 58.762 43.478 0.00 0.00 40.04 3.51
454 455 2.435938 TTCTGGAATGCGGGCGAC 60.436 61.111 0.00 0.00 0.00 5.19
458 459 2.099756 GGAATTTCTTCTGGAATGCGGG 59.900 50.000 0.00 0.00 33.53 6.13
605 606 6.476243 TCTGCTTCTTATGTTTTCGGTAAC 57.524 37.500 0.00 0.00 0.00 2.50
623 624 2.561419 GCATATTCATGGCCAATCTGCT 59.439 45.455 10.96 0.00 33.00 4.24
697 698 3.575687 GGCCAATCTGCTTATAGCCATTT 59.424 43.478 0.00 0.00 41.51 2.32
699 700 2.556114 GGGCCAATCTGCTTATAGCCAT 60.556 50.000 4.39 0.00 41.51 4.40
700 701 1.202927 GGGCCAATCTGCTTATAGCCA 60.203 52.381 4.39 0.00 41.51 4.75
701 702 1.074566 AGGGCCAATCTGCTTATAGCC 59.925 52.381 6.18 0.00 41.51 3.93
703 704 4.646492 ACAAAAGGGCCAATCTGCTTATAG 59.354 41.667 6.18 0.00 0.00 1.31
704 705 4.609301 ACAAAAGGGCCAATCTGCTTATA 58.391 39.130 6.18 0.00 0.00 0.98
707 708 1.720781 ACAAAAGGGCCAATCTGCTT 58.279 45.000 6.18 0.00 0.00 3.91
709 710 3.430790 GGATTACAAAAGGGCCAATCTGC 60.431 47.826 6.18 0.00 0.00 4.26
712 713 4.817318 TTGGATTACAAAAGGGCCAATC 57.183 40.909 6.18 4.80 35.79 2.67
803 804 2.417243 GGGCAGTCATAAACCATGCAAC 60.417 50.000 0.00 0.00 38.63 4.17
1226 3138 2.102357 CGCGTACGACATGAGCCT 59.898 61.111 21.65 0.00 43.93 4.58
1269 3181 1.195448 ACATTTTCAGCTTCTCGTGCG 59.805 47.619 0.00 0.00 35.28 5.34
1284 3196 5.395768 CCTGAGGATCTCGTTTCCTACATTT 60.396 44.000 0.00 0.00 43.75 2.32
1297 3209 0.461693 GCACTGCACCTGAGGATCTC 60.462 60.000 4.99 0.00 34.92 2.75
1305 3217 0.892358 AGTCAATGGCACTGCACCTG 60.892 55.000 2.82 0.00 0.00 4.00
1341 3253 2.037251 AGCAGCGAGTTGTAGGAAAGAA 59.963 45.455 0.00 0.00 0.00 2.52
1368 3280 1.004628 TCCACCAGTCCATCCATGTTG 59.995 52.381 0.00 0.00 0.00 3.33
1492 3404 3.359950 CTGGATTTAGCAAAGGAGCCTT 58.640 45.455 0.00 0.00 37.98 4.35
1548 3460 4.390909 GGAAGTTTACATACCTGTGGAACG 59.609 45.833 0.00 0.00 42.39 3.95
1689 3624 4.620589 ACATGAGGATAGAAGCAGATGG 57.379 45.455 0.00 0.00 0.00 3.51
1900 3835 0.912486 ACTTGTCACATAGCCTCCCC 59.088 55.000 0.00 0.00 0.00 4.81
2196 4131 4.321601 CGCCTTACATTCCAGGATAGAGAG 60.322 50.000 0.00 0.00 30.81 3.20
2199 4134 2.037251 GCGCCTTACATTCCAGGATAGA 59.963 50.000 0.00 0.00 30.81 1.98
2201 4136 1.765904 TGCGCCTTACATTCCAGGATA 59.234 47.619 4.18 0.00 30.81 2.59
2202 4137 0.546122 TGCGCCTTACATTCCAGGAT 59.454 50.000 4.18 0.00 30.81 3.24
2203 4138 0.546122 ATGCGCCTTACATTCCAGGA 59.454 50.000 4.18 0.00 30.81 3.86
2205 4140 2.146342 CCTATGCGCCTTACATTCCAG 58.854 52.381 4.18 0.00 0.00 3.86
2206 4141 1.765904 TCCTATGCGCCTTACATTCCA 59.234 47.619 4.18 0.00 0.00 3.53
2207 4142 2.543777 TCCTATGCGCCTTACATTCC 57.456 50.000 4.18 0.00 0.00 3.01
2208 4143 3.931578 AGATCCTATGCGCCTTACATTC 58.068 45.455 4.18 0.00 0.00 2.67
2212 4147 3.495001 GTGAAAGATCCTATGCGCCTTAC 59.505 47.826 4.18 0.00 0.00 2.34
2213 4148 3.133901 TGTGAAAGATCCTATGCGCCTTA 59.866 43.478 4.18 0.00 0.00 2.69
2214 4149 2.092968 TGTGAAAGATCCTATGCGCCTT 60.093 45.455 4.18 0.00 0.00 4.35
2215 4150 1.486310 TGTGAAAGATCCTATGCGCCT 59.514 47.619 4.18 0.00 0.00 5.52
2216 4151 1.869767 CTGTGAAAGATCCTATGCGCC 59.130 52.381 4.18 0.00 0.00 6.53
2217 4152 1.262683 GCTGTGAAAGATCCTATGCGC 59.737 52.381 0.00 0.00 0.00 6.09
2218 4153 2.831333 AGCTGTGAAAGATCCTATGCG 58.169 47.619 0.00 0.00 0.00 4.73
2220 4155 4.774124 TGGAAGCTGTGAAAGATCCTATG 58.226 43.478 0.00 0.00 35.48 2.23
2223 4158 3.795688 TTGGAAGCTGTGAAAGATCCT 57.204 42.857 0.00 0.00 35.48 3.24
2225 4160 6.317140 TCATGTATTGGAAGCTGTGAAAGATC 59.683 38.462 0.00 0.00 0.00 2.75
2227 4162 5.559770 TCATGTATTGGAAGCTGTGAAAGA 58.440 37.500 0.00 0.00 0.00 2.52
2228 4163 5.413833 ACTCATGTATTGGAAGCTGTGAAAG 59.586 40.000 0.00 0.00 0.00 2.62
2229 4164 5.316167 ACTCATGTATTGGAAGCTGTGAAA 58.684 37.500 0.00 0.00 0.00 2.69
2230 4165 4.910195 ACTCATGTATTGGAAGCTGTGAA 58.090 39.130 0.00 0.00 0.00 3.18
2411 4798 5.455183 CCAGCATCCATTAATACTCACTCCA 60.455 44.000 0.00 0.00 0.00 3.86
2440 4827 9.180678 CCTACATAAAAACACAACTGTCAAATC 57.819 33.333 0.00 0.00 0.00 2.17
2512 4899 2.166130 TTGTCGCCTCAATCGCCTCA 62.166 55.000 0.00 0.00 0.00 3.86
2528 4915 7.653311 GCCAAGAAAAGATTTCAACAGTATTGT 59.347 33.333 5.71 0.00 39.87 2.71
2561 4948 0.389296 AAGCAAATAAAACCCGCGGC 60.389 50.000 22.85 3.71 0.00 6.53
2713 5100 2.162681 CCGAAATTCCTTTGCTCCAGT 58.837 47.619 0.00 0.00 0.00 4.00
2715 5102 1.074727 TCCCGAAATTCCTTTGCTCCA 59.925 47.619 0.00 0.00 0.00 3.86
2831 5218 4.118093 ACAAACAAGTAAAACCCACAGC 57.882 40.909 0.00 0.00 0.00 4.40
2848 5235 7.442364 GGCTAGAATCATACAGCTATGAACAAA 59.558 37.037 3.33 0.00 41.73 2.83
2890 5277 7.657336 ACAAAGTCAGAACAGAAAGTGAAAAA 58.343 30.769 0.00 0.00 0.00 1.94
2940 5489 0.464036 TCAGAAACGTGTGCAGAGGT 59.536 50.000 2.97 2.97 0.00 3.85
2941 5490 1.800805 ATCAGAAACGTGTGCAGAGG 58.199 50.000 1.48 1.48 0.00 3.69
2951 5500 1.059692 CGCAGCACTGTATCAGAAACG 59.940 52.381 3.70 0.00 35.18 3.60
3221 5771 4.390909 AGTTATACGGGCGAAAGTCAAAAG 59.609 41.667 0.00 0.00 37.54 2.27
3232 5782 3.058708 TGACTATCGAAGTTATACGGGCG 60.059 47.826 0.00 0.00 39.07 6.13
3239 5789 7.338703 TCACCTAGTGTTGACTATCGAAGTTAT 59.661 37.037 0.00 0.00 35.06 1.89
3430 5982 1.390926 GGTACAGGGAGGACTGGGA 59.609 63.158 0.00 0.00 42.75 4.37
3482 6071 7.120579 AGTCTGTAATCGCCATAGATAGAAGAG 59.879 40.741 0.00 0.00 0.00 2.85
3488 6077 6.894339 TCAAGTCTGTAATCGCCATAGATA 57.106 37.500 0.00 0.00 0.00 1.98
3551 6140 4.402829 TCCTCTCTTTATCGAGCTATGCT 58.597 43.478 0.00 0.00 43.88 3.79
3552 6141 4.775058 TCCTCTCTTTATCGAGCTATGC 57.225 45.455 0.00 0.00 0.00 3.14
3553 6142 5.918011 GTGTTCCTCTCTTTATCGAGCTATG 59.082 44.000 0.00 0.00 0.00 2.23
3554 6143 5.278071 CGTGTTCCTCTCTTTATCGAGCTAT 60.278 44.000 0.00 0.00 0.00 2.97
3555 6144 4.035324 CGTGTTCCTCTCTTTATCGAGCTA 59.965 45.833 0.00 0.00 0.00 3.32
3556 6145 3.181495 CGTGTTCCTCTCTTTATCGAGCT 60.181 47.826 0.00 0.00 0.00 4.09
3557 6146 3.109619 CGTGTTCCTCTCTTTATCGAGC 58.890 50.000 0.00 0.00 0.00 5.03
3565 6154 1.664965 GTGCGCGTGTTCCTCTCTT 60.665 57.895 8.43 0.00 0.00 2.85
3640 6329 3.244700 GCCCATGACTGGCTGATATAAGT 60.245 47.826 4.37 0.00 45.70 2.24
3690 6389 1.384191 AGTTCACTGGGCCCCAATC 59.616 57.895 22.27 4.94 30.80 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.