Multiple sequence alignment - TraesCS5A01G455400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G455400 chr5A 100.000 6663 0 0 1 6663 635939944 635933282 0.000000e+00 12305.0
1 TraesCS5A01G455400 chr5A 86.334 1383 152 24 1674 3023 635948320 635949698 0.000000e+00 1472.0
2 TraesCS5A01G455400 chr5A 82.423 1263 128 38 4453 5658 635951105 635952330 0.000000e+00 1016.0
3 TraesCS5A01G455400 chr5A 92.219 604 42 2 6065 6663 520586525 520585922 0.000000e+00 850.0
4 TraesCS5A01G455400 chr5A 88.352 704 76 6 3734 4433 635950308 635951009 0.000000e+00 841.0
5 TraesCS5A01G455400 chr5A 91.196 602 50 3 6064 6663 648314340 648314940 0.000000e+00 815.0
6 TraesCS5A01G455400 chr5A 91.275 596 50 2 6067 6660 64789404 64788809 0.000000e+00 811.0
7 TraesCS5A01G455400 chr5A 86.827 539 51 6 3074 3612 635949720 635950238 9.630000e-163 584.0
8 TraesCS5A01G455400 chr5A 87.252 353 33 10 1035 1379 635947590 635947938 6.260000e-105 392.0
9 TraesCS5A01G455400 chr5A 95.146 103 3 2 5838 5938 607407741 607407843 1.920000e-35 161.0
10 TraesCS5A01G455400 chr5A 96.000 50 2 0 5781 5830 204995491 204995540 1.540000e-11 82.4
11 TraesCS5A01G455400 chr5B 91.847 4796 266 46 1065 5780 638667702 638672452 0.000000e+00 6575.0
12 TraesCS5A01G455400 chr5B 85.307 1157 123 22 1554 2678 638646814 638645673 0.000000e+00 1151.0
13 TraesCS5A01G455400 chr5B 83.477 1047 99 38 4453 5465 638643635 638642629 0.000000e+00 907.0
14 TraesCS5A01G455400 chr5B 84.100 956 111 26 2682 3612 638645596 638644657 0.000000e+00 885.0
15 TraesCS5A01G455400 chr5B 92.397 605 44 2 6061 6663 111912958 111913562 0.000000e+00 861.0
16 TraesCS5A01G455400 chr5B 89.881 504 48 3 3944 4446 638644219 638643718 0.000000e+00 645.0
17 TraesCS5A01G455400 chr5B 86.455 347 39 6 1044 1388 638647342 638647002 2.270000e-99 374.0
18 TraesCS5A01G455400 chr5B 76.523 558 74 31 1743 2265 647924254 647923719 1.110000e-62 252.0
19 TraesCS5A01G455400 chr5B 83.740 123 5 9 922 1043 638667600 638667708 1.180000e-17 102.0
20 TraesCS5A01G455400 chr7D 87.048 2293 227 43 1484 3720 53781740 53784018 0.000000e+00 2525.0
21 TraesCS5A01G455400 chr7D 89.424 2033 172 19 3733 5738 53784087 53786103 0.000000e+00 2523.0
22 TraesCS5A01G455400 chr7D 93.730 319 20 0 1034 1352 53781001 53781319 4.670000e-131 479.0
23 TraesCS5A01G455400 chr5D 88.384 2135 173 32 1619 3720 508578898 508576806 0.000000e+00 2499.0
24 TraesCS5A01G455400 chr5D 88.436 2084 184 35 3733 5780 508576738 508574676 0.000000e+00 2460.0
25 TraesCS5A01G455400 chr5D 85.773 1933 209 39 1707 3612 508613877 508615770 0.000000e+00 1986.0
26 TraesCS5A01G455400 chr5D 94.702 906 43 4 1 903 421087957 421088860 0.000000e+00 1402.0
27 TraesCS5A01G455400 chr5D 82.394 1136 109 35 4592 5680 508616993 508618084 0.000000e+00 905.0
28 TraesCS5A01G455400 chr5D 92.219 604 43 4 6062 6663 4312869 4313470 0.000000e+00 852.0
29 TraesCS5A01G455400 chr5D 89.721 681 31 9 929 1598 508579622 508578970 0.000000e+00 833.0
30 TraesCS5A01G455400 chr5D 91.152 486 42 1 3961 4446 508616228 508616712 0.000000e+00 658.0
31 TraesCS5A01G455400 chr5D 78.829 666 94 30 1041 1683 508613164 508613805 8.050000e-109 405.0
32 TraesCS5A01G455400 chr5D 84.000 75 7 3 5851 5925 285553429 285553360 4.310000e-07 67.6
33 TraesCS5A01G455400 chr7A 88.153 2085 187 27 3733 5788 57213911 57215964 0.000000e+00 2427.0
34 TraesCS5A01G455400 chr7A 87.095 1666 146 24 1035 2656 57211001 57212641 0.000000e+00 1821.0
35 TraesCS5A01G455400 chr7A 86.486 1073 117 21 2663 3720 57212783 57213842 0.000000e+00 1153.0
36 TraesCS5A01G455400 chr4A 87.612 2123 220 29 1627 3720 669582185 669580077 0.000000e+00 2423.0
37 TraesCS5A01G455400 chr4A 87.874 2037 198 31 1715 3720 668747751 668749769 0.000000e+00 2348.0
38 TraesCS5A01G455400 chr4A 88.216 1850 174 19 3733 5554 669580009 669578176 0.000000e+00 2169.0
39 TraesCS5A01G455400 chr4A 88.028 1846 182 17 3733 5554 668749839 668751669 0.000000e+00 2148.0
40 TraesCS5A01G455400 chr4A 91.887 604 44 5 6062 6663 699986181 699986781 0.000000e+00 839.0
41 TraesCS5A01G455400 chr4A 86.747 581 42 14 1024 1588 669582834 669582273 1.230000e-171 614.0
42 TraesCS5A01G455400 chr4A 88.521 453 43 5 1021 1467 668747133 668747582 2.110000e-149 540.0
43 TraesCS5A01G455400 chr4A 84.375 96 3 5 5932 6027 668787537 668787620 4.280000e-12 84.2
44 TraesCS5A01G455400 chr1A 95.149 907 39 3 1 903 586753917 586754822 0.000000e+00 1426.0
45 TraesCS5A01G455400 chr2D 94.512 911 47 2 1 909 610412710 610413619 0.000000e+00 1402.0
46 TraesCS5A01G455400 chr2D 91.199 909 72 8 1 906 568424868 568423965 0.000000e+00 1229.0
47 TraesCS5A01G455400 chr6A 91.639 909 47 7 1 907 13120168 13121049 0.000000e+00 1230.0
48 TraesCS5A01G455400 chr6A 84.320 1014 117 26 2532 3519 4520882 4519885 0.000000e+00 953.0
49 TraesCS5A01G455400 chr6A 76.165 558 76 33 1743 2265 566684473 566685008 2.400000e-59 241.0
50 TraesCS5A01G455400 chr3A 91.475 915 49 7 1 913 22425019 22425906 0.000000e+00 1230.0
51 TraesCS5A01G455400 chr3A 86.287 474 58 6 1 469 212719303 212719774 5.960000e-140 508.0
52 TraesCS5A01G455400 chr2A 89.445 919 85 11 1 916 389629750 389628841 0.000000e+00 1149.0
53 TraesCS5A01G455400 chr2A 93.578 654 39 2 258 909 1782338 1781686 0.000000e+00 972.0
54 TraesCS5A01G455400 chr2A 86.555 476 54 9 1 469 6421314 6421786 3.560000e-142 516.0
55 TraesCS5A01G455400 chr2A 89.011 364 35 4 1 361 59007066 59007427 4.740000e-121 446.0
56 TraesCS5A01G455400 chr7B 90.192 887 72 8 1 885 74578345 74577472 0.000000e+00 1142.0
57 TraesCS5A01G455400 chr7B 93.035 603 40 2 6062 6663 48195153 48195754 0.000000e+00 880.0
58 TraesCS5A01G455400 chr7B 91.887 604 45 4 6062 6663 710736472 710735871 0.000000e+00 841.0
59 TraesCS5A01G455400 chr3B 86.538 988 112 10 1707 2678 171173213 171174195 0.000000e+00 1068.0
60 TraesCS5A01G455400 chr3B 85.101 839 68 16 4502 5311 171177527 171178337 0.000000e+00 804.0
61 TraesCS5A01G455400 chr3B 87.270 707 84 5 3745 4446 171175177 171175882 0.000000e+00 802.0
62 TraesCS5A01G455400 chr6B 91.497 588 46 4 6062 6648 40130164 40130748 0.000000e+00 806.0
63 TraesCS5A01G455400 chr4D 75.725 552 80 30 1743 2259 222195779 222195247 1.870000e-55 228.0
64 TraesCS5A01G455400 chrUn 96.000 50 2 0 5781 5830 67781413 67781462 1.540000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G455400 chr5A 635933282 635939944 6662 True 12305.000000 12305 100.000000 1 6663 1 chr5A.!!$R3 6662
1 TraesCS5A01G455400 chr5A 635947590 635952330 4740 False 861.000000 1472 86.237600 1035 5658 5 chr5A.!!$F4 4623
2 TraesCS5A01G455400 chr5A 520585922 520586525 603 True 850.000000 850 92.219000 6065 6663 1 chr5A.!!$R2 598
3 TraesCS5A01G455400 chr5A 648314340 648314940 600 False 815.000000 815 91.196000 6064 6663 1 chr5A.!!$F3 599
4 TraesCS5A01G455400 chr5A 64788809 64789404 595 True 811.000000 811 91.275000 6067 6660 1 chr5A.!!$R1 593
5 TraesCS5A01G455400 chr5B 638667600 638672452 4852 False 3338.500000 6575 87.793500 922 5780 2 chr5B.!!$F2 4858
6 TraesCS5A01G455400 chr5B 111912958 111913562 604 False 861.000000 861 92.397000 6061 6663 1 chr5B.!!$F1 602
7 TraesCS5A01G455400 chr5B 638642629 638647342 4713 True 792.400000 1151 85.844000 1044 5465 5 chr5B.!!$R2 4421
8 TraesCS5A01G455400 chr5B 647923719 647924254 535 True 252.000000 252 76.523000 1743 2265 1 chr5B.!!$R1 522
9 TraesCS5A01G455400 chr7D 53781001 53786103 5102 False 1842.333333 2525 90.067333 1034 5738 3 chr7D.!!$F1 4704
10 TraesCS5A01G455400 chr5D 508574676 508579622 4946 True 1930.666667 2499 88.847000 929 5780 3 chr5D.!!$R2 4851
11 TraesCS5A01G455400 chr5D 421087957 421088860 903 False 1402.000000 1402 94.702000 1 903 1 chr5D.!!$F2 902
12 TraesCS5A01G455400 chr5D 508613164 508618084 4920 False 988.500000 1986 84.537000 1041 5680 4 chr5D.!!$F3 4639
13 TraesCS5A01G455400 chr5D 4312869 4313470 601 False 852.000000 852 92.219000 6062 6663 1 chr5D.!!$F1 601
14 TraesCS5A01G455400 chr7A 57211001 57215964 4963 False 1800.333333 2427 87.244667 1035 5788 3 chr7A.!!$F1 4753
15 TraesCS5A01G455400 chr4A 669578176 669582834 4658 True 1735.333333 2423 87.525000 1024 5554 3 chr4A.!!$R1 4530
16 TraesCS5A01G455400 chr4A 668747133 668751669 4536 False 1678.666667 2348 88.141000 1021 5554 3 chr4A.!!$F3 4533
17 TraesCS5A01G455400 chr4A 699986181 699986781 600 False 839.000000 839 91.887000 6062 6663 1 chr4A.!!$F2 601
18 TraesCS5A01G455400 chr1A 586753917 586754822 905 False 1426.000000 1426 95.149000 1 903 1 chr1A.!!$F1 902
19 TraesCS5A01G455400 chr2D 610412710 610413619 909 False 1402.000000 1402 94.512000 1 909 1 chr2D.!!$F1 908
20 TraesCS5A01G455400 chr2D 568423965 568424868 903 True 1229.000000 1229 91.199000 1 906 1 chr2D.!!$R1 905
21 TraesCS5A01G455400 chr6A 13120168 13121049 881 False 1230.000000 1230 91.639000 1 907 1 chr6A.!!$F1 906
22 TraesCS5A01G455400 chr6A 4519885 4520882 997 True 953.000000 953 84.320000 2532 3519 1 chr6A.!!$R1 987
23 TraesCS5A01G455400 chr6A 566684473 566685008 535 False 241.000000 241 76.165000 1743 2265 1 chr6A.!!$F2 522
24 TraesCS5A01G455400 chr3A 22425019 22425906 887 False 1230.000000 1230 91.475000 1 913 1 chr3A.!!$F1 912
25 TraesCS5A01G455400 chr2A 389628841 389629750 909 True 1149.000000 1149 89.445000 1 916 1 chr2A.!!$R2 915
26 TraesCS5A01G455400 chr2A 1781686 1782338 652 True 972.000000 972 93.578000 258 909 1 chr2A.!!$R1 651
27 TraesCS5A01G455400 chr7B 74577472 74578345 873 True 1142.000000 1142 90.192000 1 885 1 chr7B.!!$R1 884
28 TraesCS5A01G455400 chr7B 48195153 48195754 601 False 880.000000 880 93.035000 6062 6663 1 chr7B.!!$F1 601
29 TraesCS5A01G455400 chr7B 710735871 710736472 601 True 841.000000 841 91.887000 6062 6663 1 chr7B.!!$R2 601
30 TraesCS5A01G455400 chr3B 171173213 171178337 5124 False 891.333333 1068 86.303000 1707 5311 3 chr3B.!!$F1 3604
31 TraesCS5A01G455400 chr6B 40130164 40130748 584 False 806.000000 806 91.497000 6062 6648 1 chr6B.!!$F1 586
32 TraesCS5A01G455400 chr4D 222195247 222195779 532 True 228.000000 228 75.725000 1743 2259 1 chr4D.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1031 0.315251 CTCGTCAGACCAGCAAGTCA 59.685 55.000 8.62 0.0 39.34 3.41 F
2117 2870 0.543749 CTACCTTGGCCTTCCCAGAG 59.456 60.000 3.32 0.0 46.39 3.35 F
2486 3247 0.674581 TTGCACCTCAGGAGATTGCG 60.675 55.000 0.00 0.0 38.98 4.85 F
3024 4051 1.371467 TCCCTCCCATGACACACAAT 58.629 50.000 0.00 0.0 0.00 2.71 F
3850 4974 1.472728 GCCCGTGTGAGTGTATTAGGG 60.473 57.143 0.00 0.0 40.49 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2901 3928 0.107459 GGTCTCCAGTTGCAGGGATC 60.107 60.000 4.54 0.00 31.57 3.36 R
3850 4974 0.321671 TCACCAAGCTAGGCACAGAC 59.678 55.000 0.00 0.00 0.00 3.51 R
3993 5284 0.817654 GGCAAGTACCCTGCAATTCC 59.182 55.000 16.86 0.00 0.00 3.01 R
3994 5285 1.202348 GTGGCAAGTACCCTGCAATTC 59.798 52.381 16.86 3.19 0.00 2.17 R
5809 8858 0.543277 ACGTGGGATCATGCATGACT 59.457 50.000 30.92 19.39 40.03 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 5.570320 ACCTAATAGTGGATGTGCAACTTT 58.430 37.500 0.00 0.00 38.04 2.66
147 148 3.229552 GTGATTTGCAACTTTCTCTCGC 58.770 45.455 0.00 0.00 0.00 5.03
223 225 5.102313 GTGAGTTTTGCAACTTTAGCACTT 58.898 37.500 0.00 0.00 43.79 3.16
302 354 2.104859 CCTGCCTGTGAGATGTGCG 61.105 63.158 0.00 0.00 0.00 5.34
303 355 2.046988 TGCCTGTGAGATGTGCGG 60.047 61.111 0.00 0.00 0.00 5.69
337 389 0.618458 CCTGGCCAACTACCTAGCAA 59.382 55.000 7.01 0.00 0.00 3.91
515 568 4.024048 CCAACAGTGAAAAACTACGCATCT 60.024 41.667 0.00 0.00 36.83 2.90
531 584 2.224572 GCATCTACGAGTAGGGAGGAGA 60.225 54.545 10.04 0.00 34.06 3.71
876 935 3.488090 GGCCGCTCGTTCTTTCCG 61.488 66.667 0.00 0.00 0.00 4.30
970 1031 0.315251 CTCGTCAGACCAGCAAGTCA 59.685 55.000 8.62 0.00 39.34 3.41
1443 1832 4.415735 GAGCTTAATTTGCTACCAACTGC 58.584 43.478 5.76 0.00 41.30 4.40
1482 1906 1.070786 GAGGACCGTTTGCTGGTGA 59.929 57.895 0.00 0.00 40.63 4.02
1516 1946 3.410631 TGGCTAATCAACGGTGAAAGA 57.589 42.857 17.70 1.76 37.30 2.52
1551 2026 5.405935 AATTCCACCAACCAATTAAGCTC 57.594 39.130 0.00 0.00 0.00 4.09
1595 2106 8.582433 GCATTTAGCCTAACAACAAAAGTTAA 57.418 30.769 0.00 0.00 37.23 2.01
1601 2112 5.679792 GCCTAACAACAAAAGTTAAGACGTG 59.320 40.000 0.00 0.00 31.66 4.49
1671 2276 4.655762 TGACACTGCTATGTGATAGGAC 57.344 45.455 10.94 0.00 40.12 3.85
1691 2389 7.551035 AGGACGATCGGTATATGTATACTTC 57.449 40.000 20.98 2.04 38.79 3.01
1705 2413 6.262193 TGTATACTTCACTTCATGACACGA 57.738 37.500 4.17 0.00 36.92 4.35
1762 2473 2.484417 CGAATCTTGGGAGAGTGATGGG 60.484 54.545 0.00 0.00 34.85 4.00
1864 2577 5.819991 TCATAATCAGGAGGTCAGCTTTTT 58.180 37.500 0.00 0.00 0.00 1.94
2054 2807 7.777440 GTCAGATAAATCAAAGAAGGGAGGAAT 59.223 37.037 0.00 0.00 0.00 3.01
2117 2870 0.543749 CTACCTTGGCCTTCCCAGAG 59.456 60.000 3.32 0.00 46.39 3.35
2124 2877 1.377856 GCCTTCCCAGAGCAAGACC 60.378 63.158 0.00 0.00 0.00 3.85
2269 3028 4.183865 GGGCATGCAGAAACCTTTAATTC 58.816 43.478 21.36 0.00 0.00 2.17
2276 3036 7.823745 TGCAGAAACCTTTAATTCTCTTCTT 57.176 32.000 0.00 0.00 33.73 2.52
2390 3151 3.828451 ACCATATTGCAATAGACATGCCC 59.172 43.478 22.76 0.00 43.16 5.36
2447 3208 1.691196 TCCTTGGAGGCTTTGTTGTG 58.309 50.000 0.00 0.00 34.61 3.33
2485 3246 1.538047 TTTGCACCTCAGGAGATTGC 58.462 50.000 0.00 13.03 37.60 3.56
2486 3247 0.674581 TTGCACCTCAGGAGATTGCG 60.675 55.000 0.00 0.00 38.98 4.85
2644 3405 5.958380 GGGAGGGAAGAAATTTCCACTTTAT 59.042 40.000 14.61 0.00 40.32 1.40
2840 3862 7.545362 ACTATCACAACAATTATCAGCACTC 57.455 36.000 0.00 0.00 0.00 3.51
2847 3869 8.121086 CACAACAATTATCAGCACTCATCTAAG 58.879 37.037 0.00 0.00 0.00 2.18
2854 3876 8.932434 TTATCAGCACTCATCTAAGTAGATCT 57.068 34.615 0.00 0.00 40.91 2.75
2904 3931 6.690194 ACTTCATCCAAAGCTATTGTGATC 57.310 37.500 0.00 0.00 0.00 2.92
3016 4043 3.855668 ACAAATTTGTTCCCTCCCATGA 58.144 40.909 18.13 0.00 38.47 3.07
3024 4051 1.371467 TCCCTCCCATGACACACAAT 58.629 50.000 0.00 0.00 0.00 2.71
3047 4077 9.694520 CAATAATAAATGACTTCGTGTTCAGAG 57.305 33.333 0.00 0.00 0.00 3.35
3076 4107 7.654022 TCTTTCCATGAAAACTTTAACACCT 57.346 32.000 0.00 0.00 30.84 4.00
3124 4156 1.965935 TGTGACCAACATGACACCTG 58.034 50.000 0.00 0.00 32.36 4.00
3128 4160 4.284746 TGTGACCAACATGACACCTGTATA 59.715 41.667 0.00 0.00 32.36 1.47
3149 4183 2.358957 TCTTGGATTTGCAGGTCATCG 58.641 47.619 3.29 0.00 0.00 3.84
3240 4277 6.154021 TGGTATAGACTACCCTGAGTTGTTTC 59.846 42.308 0.00 0.00 34.39 2.78
3247 4284 1.541233 CCCTGAGTTGTTTCTGACGCT 60.541 52.381 0.00 0.00 0.00 5.07
3642 4690 9.976511 ATTTCTTTTAGTTAAGTAGGGTTTTGC 57.023 29.630 0.00 0.00 0.00 3.68
3740 4860 4.962362 TCAGTCTGTGGATGCTAGGATTTA 59.038 41.667 0.00 0.00 0.00 1.40
3820 4944 6.127758 TGTGCTTCATGGTAATGTCCATTAAC 60.128 38.462 7.91 7.91 44.75 2.01
3850 4974 1.472728 GCCCGTGTGAGTGTATTAGGG 60.473 57.143 0.00 0.00 40.49 3.53
3993 5284 3.304559 CGTCGAAAGGAGCTACAATTCTG 59.695 47.826 0.00 0.00 0.00 3.02
3994 5285 3.619038 GTCGAAAGGAGCTACAATTCTGG 59.381 47.826 0.00 0.00 0.00 3.86
4060 5351 7.307131 TGATGATAATCTGTGGCTATCTTCA 57.693 36.000 0.00 0.00 35.51 3.02
4204 5495 4.115516 CTGGGTTTGTCATACTCGATGAG 58.884 47.826 0.00 0.00 45.46 2.90
4233 5524 7.942341 GGGAAATCCATATGTAAGTATTGTCCA 59.058 37.037 1.24 0.00 37.91 4.02
4282 5573 4.082300 TGTTCGCTGCATTAACCATTTGAT 60.082 37.500 0.00 0.00 0.00 2.57
4329 5620 1.528129 CTTGTTCTGGAGAAGTGGGC 58.472 55.000 0.00 0.00 34.27 5.36
4356 5647 7.639378 TCTTCCCTTTATATTTTGGTGCTACT 58.361 34.615 0.00 0.00 0.00 2.57
4428 5719 2.973694 TTTACAGAGGACGGGTATGC 57.026 50.000 0.00 0.00 0.00 3.14
4434 5725 1.379443 AGGACGGGTATGCAGTCGA 60.379 57.895 0.00 0.00 35.87 4.20
4435 5726 0.968901 AGGACGGGTATGCAGTCGAA 60.969 55.000 0.00 0.00 35.87 3.71
4451 5818 5.049680 GCAGTCGAATACCTCAGTTTTTCAA 60.050 40.000 0.00 0.00 0.00 2.69
4467 5834 7.706179 CAGTTTTTCAAATCTAAACTGCTGGAA 59.294 33.333 12.30 0.00 46.52 3.53
4575 7469 2.663826 ACCGAGAAGATGAGAAGCAC 57.336 50.000 0.00 0.00 0.00 4.40
4582 7476 5.752472 CGAGAAGATGAGAAGCACATATGTT 59.248 40.000 5.37 0.00 0.00 2.71
4586 7480 9.270640 AGAAGATGAGAAGCACATATGTTATTC 57.729 33.333 16.81 16.81 0.00 1.75
4624 7518 7.933577 TGTTCTCTGACATAAGTTTCAGTGATT 59.066 33.333 8.06 0.00 40.33 2.57
4704 7659 9.507280 CAACCAAATAAATCTAACTACATGCTG 57.493 33.333 0.00 0.00 0.00 4.41
4847 7803 2.898738 CAGGGCAGAGCAGACGAT 59.101 61.111 0.00 0.00 0.00 3.73
4889 7850 6.209589 GGATTAAGGTTGAAGCTCTTCCTTTT 59.790 38.462 14.46 6.38 39.00 2.27
4909 7870 8.966868 TCCTTTTAATGTTTTCAGTCTCTTGTT 58.033 29.630 0.00 0.00 0.00 2.83
4954 7918 9.559977 GAAACCAATTCAATGTTGCTCTTGCAC 62.560 40.741 0.00 0.00 42.40 4.57
5356 8350 2.289002 GCAAGTCGCAGCAAGCTATAAT 59.711 45.455 0.00 0.00 42.61 1.28
5358 8352 1.869767 AGTCGCAGCAAGCTATAATGC 59.130 47.619 0.00 0.00 42.61 3.56
5368 8362 1.072965 AGCTATAATGCACCTGAGGGC 59.927 52.381 2.38 4.06 35.63 5.19
5369 8363 1.884067 GCTATAATGCACCTGAGGGCC 60.884 57.143 2.38 0.00 35.63 5.80
5371 8365 0.630673 ATAATGCACCTGAGGGCCAA 59.369 50.000 6.18 0.00 35.63 4.52
5486 8509 3.646162 TCACTTCATTGAGGGTGTGTAGT 59.354 43.478 16.10 1.20 0.00 2.73
5562 8592 2.286418 CGATGGCTTGCTAAAATCGGAC 60.286 50.000 0.00 0.00 37.17 4.79
5670 8715 7.812309 TTATGTAGTGTCAGATCAAAACTCG 57.188 36.000 0.00 0.00 0.00 4.18
5680 8725 8.038351 TGTCAGATCAAAACTCGGATATGTTTA 58.962 33.333 0.00 0.00 35.63 2.01
5681 8726 8.328864 GTCAGATCAAAACTCGGATATGTTTAC 58.671 37.037 0.00 0.00 35.63 2.01
5767 8816 9.674824 AAGTATCGAGTATCCATTTAAAGTACG 57.325 33.333 0.00 0.00 0.00 3.67
5768 8817 8.844244 AGTATCGAGTATCCATTTAAAGTACGT 58.156 33.333 0.00 0.00 0.00 3.57
5801 8850 9.893634 TTCAAATCTGAATATGCAAATTTCCAT 57.106 25.926 0.00 0.00 36.62 3.41
5813 8862 8.938801 ATGCAAATTTCCATATATACCAGTCA 57.061 30.769 0.00 0.00 0.00 3.41
5814 8863 8.938801 TGCAAATTTCCATATATACCAGTCAT 57.061 30.769 0.00 0.00 0.00 3.06
5815 8864 8.795513 TGCAAATTTCCATATATACCAGTCATG 58.204 33.333 0.00 0.00 0.00 3.07
5816 8865 7.756722 GCAAATTTCCATATATACCAGTCATGC 59.243 37.037 0.00 0.00 0.00 4.06
5817 8866 8.795513 CAAATTTCCATATATACCAGTCATGCA 58.204 33.333 0.00 0.00 0.00 3.96
5818 8867 9.537852 AAATTTCCATATATACCAGTCATGCAT 57.462 29.630 0.00 0.00 0.00 3.96
5819 8868 7.926674 TTTCCATATATACCAGTCATGCATG 57.073 36.000 21.07 21.07 0.00 4.06
5820 8869 6.872585 TCCATATATACCAGTCATGCATGA 57.127 37.500 25.42 25.42 0.00 3.07
5821 8870 7.441903 TCCATATATACCAGTCATGCATGAT 57.558 36.000 30.89 18.01 39.30 2.45
5822 8871 7.503549 TCCATATATACCAGTCATGCATGATC 58.496 38.462 30.89 22.76 39.30 2.92
5823 8872 6.709397 CCATATATACCAGTCATGCATGATCC 59.291 42.308 30.89 19.42 39.30 3.36
5824 8873 2.936919 TACCAGTCATGCATGATCCC 57.063 50.000 30.89 18.71 39.30 3.85
5825 8874 0.921166 ACCAGTCATGCATGATCCCA 59.079 50.000 30.89 6.81 39.30 4.37
5826 8875 1.315690 CCAGTCATGCATGATCCCAC 58.684 55.000 30.89 18.53 39.30 4.61
5827 8876 0.942252 CAGTCATGCATGATCCCACG 59.058 55.000 30.89 12.81 39.30 4.94
5828 8877 0.543277 AGTCATGCATGATCCCACGT 59.457 50.000 30.89 8.50 39.30 4.49
5829 8878 0.940126 GTCATGCATGATCCCACGTC 59.060 55.000 30.89 12.74 39.30 4.34
5830 8879 0.832626 TCATGCATGATCCCACGTCT 59.167 50.000 25.42 0.00 0.00 4.18
5831 8880 0.942252 CATGCATGATCCCACGTCTG 59.058 55.000 22.59 0.00 0.00 3.51
5832 8881 0.832626 ATGCATGATCCCACGTCTGA 59.167 50.000 0.00 0.00 0.00 3.27
5833 8882 0.612744 TGCATGATCCCACGTCTGAA 59.387 50.000 0.00 0.00 0.00 3.02
5834 8883 1.003003 TGCATGATCCCACGTCTGAAA 59.997 47.619 0.00 0.00 0.00 2.69
5835 8884 1.667724 GCATGATCCCACGTCTGAAAG 59.332 52.381 0.00 0.00 0.00 2.62
5836 8885 2.677902 GCATGATCCCACGTCTGAAAGA 60.678 50.000 0.00 0.00 43.69 2.52
5855 8904 9.197694 CTGAAAGATTAATACTTACATCCTCCG 57.802 37.037 0.00 0.00 34.07 4.63
5856 8905 8.701895 TGAAAGATTAATACTTACATCCTCCGT 58.298 33.333 0.00 0.00 0.00 4.69
5857 8906 9.543783 GAAAGATTAATACTTACATCCTCCGTT 57.456 33.333 0.00 0.00 0.00 4.44
5858 8907 9.543783 AAAGATTAATACTTACATCCTCCGTTC 57.456 33.333 0.00 0.00 0.00 3.95
5859 8908 7.668492 AGATTAATACTTACATCCTCCGTTCC 58.332 38.462 0.00 0.00 0.00 3.62
5860 8909 6.795144 TTAATACTTACATCCTCCGTTCCA 57.205 37.500 0.00 0.00 0.00 3.53
5861 8910 5.687166 AATACTTACATCCTCCGTTCCAA 57.313 39.130 0.00 0.00 0.00 3.53
5862 8911 5.687166 ATACTTACATCCTCCGTTCCAAA 57.313 39.130 0.00 0.00 0.00 3.28
5863 8912 4.360951 ACTTACATCCTCCGTTCCAAAA 57.639 40.909 0.00 0.00 0.00 2.44
5864 8913 4.918588 ACTTACATCCTCCGTTCCAAAAT 58.081 39.130 0.00 0.00 0.00 1.82
5865 8914 6.057321 ACTTACATCCTCCGTTCCAAAATA 57.943 37.500 0.00 0.00 0.00 1.40
5866 8915 6.659824 ACTTACATCCTCCGTTCCAAAATAT 58.340 36.000 0.00 0.00 0.00 1.28
5867 8916 7.798071 ACTTACATCCTCCGTTCCAAAATATA 58.202 34.615 0.00 0.00 0.00 0.86
5868 8917 8.437575 ACTTACATCCTCCGTTCCAAAATATAT 58.562 33.333 0.00 0.00 0.00 0.86
5869 8918 8.615878 TTACATCCTCCGTTCCAAAATATATG 57.384 34.615 0.00 0.00 0.00 1.78
5870 8919 6.601332 ACATCCTCCGTTCCAAAATATATGT 58.399 36.000 0.00 0.00 0.00 2.29
5871 8920 6.710744 ACATCCTCCGTTCCAAAATATATGTC 59.289 38.462 0.00 0.00 0.00 3.06
5872 8921 5.294356 TCCTCCGTTCCAAAATATATGTCG 58.706 41.667 0.00 0.00 0.00 4.35
5873 8922 5.054477 CCTCCGTTCCAAAATATATGTCGT 58.946 41.667 0.00 0.00 0.00 4.34
5874 8923 5.526111 CCTCCGTTCCAAAATATATGTCGTT 59.474 40.000 0.00 0.00 0.00 3.85
5875 8924 6.292703 CCTCCGTTCCAAAATATATGTCGTTC 60.293 42.308 0.00 0.00 0.00 3.95
5876 8925 6.342906 TCCGTTCCAAAATATATGTCGTTCT 58.657 36.000 0.00 0.00 0.00 3.01
5877 8926 6.256975 TCCGTTCCAAAATATATGTCGTTCTG 59.743 38.462 0.00 0.00 0.00 3.02
5878 8927 6.418956 CGTTCCAAAATATATGTCGTTCTGG 58.581 40.000 0.00 0.00 0.00 3.86
5879 8928 6.036735 CGTTCCAAAATATATGTCGTTCTGGT 59.963 38.462 0.00 0.00 0.00 4.00
5880 8929 7.223193 CGTTCCAAAATATATGTCGTTCTGGTA 59.777 37.037 0.00 0.00 0.00 3.25
5881 8930 8.885722 GTTCCAAAATATATGTCGTTCTGGTAA 58.114 33.333 0.00 0.00 0.00 2.85
5882 8931 8.657074 TCCAAAATATATGTCGTTCTGGTAAG 57.343 34.615 0.00 0.00 0.00 2.34
5883 8932 7.225931 TCCAAAATATATGTCGTTCTGGTAAGC 59.774 37.037 0.00 0.00 0.00 3.09
5884 8933 7.226720 CCAAAATATATGTCGTTCTGGTAAGCT 59.773 37.037 0.00 0.00 0.00 3.74
5885 8934 9.256477 CAAAATATATGTCGTTCTGGTAAGCTA 57.744 33.333 0.00 0.00 0.00 3.32
5886 8935 9.826574 AAAATATATGTCGTTCTGGTAAGCTAA 57.173 29.630 0.00 0.00 0.00 3.09
5887 8936 9.477484 AAATATATGTCGTTCTGGTAAGCTAAG 57.523 33.333 0.00 0.00 0.00 2.18
5888 8937 2.955614 TGTCGTTCTGGTAAGCTAAGC 58.044 47.619 0.00 0.00 0.00 3.09
5889 8938 2.561419 TGTCGTTCTGGTAAGCTAAGCT 59.439 45.455 0.00 0.00 42.56 3.74
5890 8939 3.760151 TGTCGTTCTGGTAAGCTAAGCTA 59.240 43.478 0.00 0.00 38.25 3.32
5891 8940 4.142447 TGTCGTTCTGGTAAGCTAAGCTAG 60.142 45.833 0.00 0.00 38.25 3.42
5892 8941 4.015084 TCGTTCTGGTAAGCTAAGCTAGT 58.985 43.478 0.00 0.00 38.25 2.57
5893 8942 4.096081 TCGTTCTGGTAAGCTAAGCTAGTC 59.904 45.833 0.00 0.00 38.25 2.59
5894 8943 4.096682 CGTTCTGGTAAGCTAAGCTAGTCT 59.903 45.833 0.00 0.00 38.25 3.24
5895 8944 5.296283 CGTTCTGGTAAGCTAAGCTAGTCTA 59.704 44.000 0.00 0.00 38.25 2.59
5896 8945 6.512091 CGTTCTGGTAAGCTAAGCTAGTCTAG 60.512 46.154 2.18 2.18 38.25 2.43
5897 8946 6.003859 TCTGGTAAGCTAAGCTAGTCTAGT 57.996 41.667 8.68 0.00 38.25 2.57
5898 8947 7.134362 TCTGGTAAGCTAAGCTAGTCTAGTA 57.866 40.000 8.68 0.00 38.25 1.82
5899 8948 7.218614 TCTGGTAAGCTAAGCTAGTCTAGTAG 58.781 42.308 8.68 4.78 38.25 2.57
5900 8949 7.070946 TCTGGTAAGCTAAGCTAGTCTAGTAGA 59.929 40.741 8.68 0.00 38.25 2.59
5901 8950 7.571919 TGGTAAGCTAAGCTAGTCTAGTAGAA 58.428 38.462 8.68 0.00 38.25 2.10
5902 8951 7.498570 TGGTAAGCTAAGCTAGTCTAGTAGAAC 59.501 40.741 8.68 0.00 38.25 3.01
5903 8952 6.607735 AAGCTAAGCTAGTCTAGTAGAACG 57.392 41.667 8.68 0.00 38.25 3.95
5904 8953 5.916318 AGCTAAGCTAGTCTAGTAGAACGA 58.084 41.667 8.68 0.00 36.99 3.85
5905 8954 5.754890 AGCTAAGCTAGTCTAGTAGAACGAC 59.245 44.000 8.68 0.00 36.99 4.34
5906 8955 5.523188 GCTAAGCTAGTCTAGTAGAACGACA 59.477 44.000 8.68 0.00 0.00 4.35
5907 8956 6.203338 GCTAAGCTAGTCTAGTAGAACGACAT 59.797 42.308 8.68 0.00 0.00 3.06
5908 8957 5.994887 AGCTAGTCTAGTAGAACGACATG 57.005 43.478 8.68 0.00 0.00 3.21
5909 8958 5.430007 AGCTAGTCTAGTAGAACGACATGT 58.570 41.667 0.00 0.00 0.00 3.21
5910 8959 6.580788 AGCTAGTCTAGTAGAACGACATGTA 58.419 40.000 8.68 0.00 0.00 2.29
5911 8960 7.218614 AGCTAGTCTAGTAGAACGACATGTAT 58.781 38.462 8.68 0.00 0.00 2.29
5912 8961 7.716123 AGCTAGTCTAGTAGAACGACATGTATT 59.284 37.037 8.68 0.00 0.00 1.89
5913 8962 8.344098 GCTAGTCTAGTAGAACGACATGTATTT 58.656 37.037 8.68 0.00 0.00 1.40
5915 8964 8.912787 AGTCTAGTAGAACGACATGTATTTTG 57.087 34.615 0.00 0.00 0.00 2.44
5916 8965 8.737175 AGTCTAGTAGAACGACATGTATTTTGA 58.263 33.333 0.00 0.00 0.00 2.69
5917 8966 9.350357 GTCTAGTAGAACGACATGTATTTTGAA 57.650 33.333 0.00 0.00 0.00 2.69
5918 8967 9.917129 TCTAGTAGAACGACATGTATTTTGAAA 57.083 29.630 0.00 0.00 0.00 2.69
5919 8968 9.953825 CTAGTAGAACGACATGTATTTTGAAAC 57.046 33.333 0.00 0.00 0.00 2.78
5920 8969 8.373048 AGTAGAACGACATGTATTTTGAAACA 57.627 30.769 0.00 0.00 0.00 2.83
5921 8970 8.495949 AGTAGAACGACATGTATTTTGAAACAG 58.504 33.333 0.00 0.00 0.00 3.16
5922 8971 7.490962 AGAACGACATGTATTTTGAAACAGA 57.509 32.000 0.00 0.00 0.00 3.41
5923 8972 7.576236 AGAACGACATGTATTTTGAAACAGAG 58.424 34.615 0.00 0.00 0.00 3.35
5924 8973 6.241207 ACGACATGTATTTTGAAACAGAGG 57.759 37.500 0.00 0.00 0.00 3.69
5925 8974 5.763204 ACGACATGTATTTTGAAACAGAGGT 59.237 36.000 0.00 0.00 0.00 3.85
5926 8975 6.932400 ACGACATGTATTTTGAAACAGAGGTA 59.068 34.615 0.00 0.00 0.00 3.08
5927 8976 7.117812 ACGACATGTATTTTGAAACAGAGGTAG 59.882 37.037 0.00 0.00 0.00 3.18
5928 8977 7.117812 CGACATGTATTTTGAAACAGAGGTAGT 59.882 37.037 0.00 0.00 0.00 2.73
5929 8978 9.431887 GACATGTATTTTGAAACAGAGGTAGTA 57.568 33.333 0.00 0.00 0.00 1.82
5930 8979 9.436957 ACATGTATTTTGAAACAGAGGTAGTAG 57.563 33.333 0.00 0.00 0.00 2.57
5931 8980 9.653287 CATGTATTTTGAAACAGAGGTAGTAGA 57.347 33.333 0.00 0.00 0.00 2.59
5940 8989 9.653287 TGAAACAGAGGTAGTAGATATGTTTTG 57.347 33.333 8.08 0.00 38.94 2.44
5941 8990 9.871238 GAAACAGAGGTAGTAGATATGTTTTGA 57.129 33.333 8.08 0.00 38.94 2.69
5944 8993 9.201989 ACAGAGGTAGTAGATATGTTTTGATCA 57.798 33.333 0.00 0.00 0.00 2.92
5977 9026 9.295825 ACTGTAAAACAAAATCCATATCAGTGA 57.704 29.630 0.00 0.00 31.56 3.41
5978 9027 9.559958 CTGTAAAACAAAATCCATATCAGTGAC 57.440 33.333 0.00 0.00 0.00 3.67
5979 9028 9.295825 TGTAAAACAAAATCCATATCAGTGACT 57.704 29.630 0.00 0.00 0.00 3.41
5980 9029 9.774742 GTAAAACAAAATCCATATCAGTGACTC 57.225 33.333 0.00 0.00 0.00 3.36
5981 9030 8.641498 AAAACAAAATCCATATCAGTGACTCT 57.359 30.769 0.00 0.00 0.00 3.24
5982 9031 7.621428 AACAAAATCCATATCAGTGACTCTG 57.379 36.000 0.00 0.00 44.85 3.35
5983 9032 5.587844 ACAAAATCCATATCAGTGACTCTGC 59.412 40.000 0.00 0.00 43.32 4.26
5984 9033 5.363562 AAATCCATATCAGTGACTCTGCA 57.636 39.130 0.00 0.00 43.32 4.41
5985 9034 3.808466 TCCATATCAGTGACTCTGCAC 57.192 47.619 0.00 0.00 43.32 4.57
5986 9035 2.099756 TCCATATCAGTGACTCTGCACG 59.900 50.000 0.00 0.00 43.42 5.34
5987 9036 1.857217 CATATCAGTGACTCTGCACGC 59.143 52.381 0.00 0.00 43.42 5.34
5988 9037 0.887933 TATCAGTGACTCTGCACGCA 59.112 50.000 0.00 0.00 43.42 5.24
5989 9038 0.668706 ATCAGTGACTCTGCACGCAC 60.669 55.000 0.00 0.00 43.42 5.34
5990 9039 2.355126 AGTGACTCTGCACGCACG 60.355 61.111 0.00 0.00 43.42 5.34
5991 9040 4.064491 GTGACTCTGCACGCACGC 62.064 66.667 0.00 0.00 0.00 5.34
6008 9057 3.845259 CCCTGCGTAGGCGGCTAA 61.845 66.667 21.51 4.36 44.51 3.09
6009 9058 2.421739 CCTGCGTAGGCGGCTAAT 59.578 61.111 21.51 0.00 44.51 1.73
6010 9059 1.227556 CCTGCGTAGGCGGCTAATT 60.228 57.895 21.51 0.00 44.51 1.40
6011 9060 0.814010 CCTGCGTAGGCGGCTAATTT 60.814 55.000 21.51 0.00 44.51 1.82
6012 9061 0.304705 CTGCGTAGGCGGCTAATTTG 59.695 55.000 21.51 11.77 44.10 2.32
6013 9062 0.391927 TGCGTAGGCGGCTAATTTGT 60.392 50.000 21.51 0.00 44.10 2.83
6014 9063 0.303796 GCGTAGGCGGCTAATTTGTC 59.696 55.000 21.51 6.13 38.78 3.18
6015 9064 1.935933 CGTAGGCGGCTAATTTGTCT 58.064 50.000 21.51 0.00 0.00 3.41
6016 9065 2.277084 CGTAGGCGGCTAATTTGTCTT 58.723 47.619 21.51 0.00 0.00 3.01
6017 9066 2.030457 CGTAGGCGGCTAATTTGTCTTG 59.970 50.000 21.51 0.00 0.00 3.02
6018 9067 2.200373 AGGCGGCTAATTTGTCTTGT 57.800 45.000 11.03 0.00 0.00 3.16
6019 9068 1.812571 AGGCGGCTAATTTGTCTTGTG 59.187 47.619 11.03 0.00 0.00 3.33
6020 9069 1.135402 GGCGGCTAATTTGTCTTGTGG 60.135 52.381 0.00 0.00 0.00 4.17
6021 9070 1.135402 GCGGCTAATTTGTCTTGTGGG 60.135 52.381 0.00 0.00 0.00 4.61
6022 9071 2.432444 CGGCTAATTTGTCTTGTGGGA 58.568 47.619 0.00 0.00 0.00 4.37
6023 9072 2.817258 CGGCTAATTTGTCTTGTGGGAA 59.183 45.455 0.00 0.00 0.00 3.97
6024 9073 3.119849 CGGCTAATTTGTCTTGTGGGAAG 60.120 47.826 0.00 0.00 0.00 3.46
6025 9074 3.367395 GGCTAATTTGTCTTGTGGGAAGC 60.367 47.826 0.00 0.00 0.00 3.86
6026 9075 3.507622 GCTAATTTGTCTTGTGGGAAGCT 59.492 43.478 0.00 0.00 0.00 3.74
6027 9076 4.379918 GCTAATTTGTCTTGTGGGAAGCTC 60.380 45.833 0.00 0.00 0.00 4.09
6028 9077 2.727123 TTTGTCTTGTGGGAAGCTCA 57.273 45.000 0.00 0.00 0.00 4.26
6029 9078 2.260844 TTGTCTTGTGGGAAGCTCAG 57.739 50.000 0.00 0.00 0.00 3.35
6030 9079 0.397941 TGTCTTGTGGGAAGCTCAGG 59.602 55.000 0.00 0.00 0.00 3.86
6031 9080 0.398318 GTCTTGTGGGAAGCTCAGGT 59.602 55.000 0.00 0.00 0.00 4.00
6032 9081 0.397941 TCTTGTGGGAAGCTCAGGTG 59.602 55.000 0.00 0.00 0.00 4.00
6033 9082 0.607489 CTTGTGGGAAGCTCAGGTGG 60.607 60.000 0.00 0.00 0.00 4.61
6034 9083 2.067932 TTGTGGGAAGCTCAGGTGGG 62.068 60.000 0.00 0.00 0.00 4.61
6035 9084 2.121963 TGGGAAGCTCAGGTGGGT 60.122 61.111 0.00 0.00 0.00 4.51
6036 9085 2.352805 GGGAAGCTCAGGTGGGTG 59.647 66.667 0.00 0.00 0.00 4.61
6037 9086 2.529744 GGGAAGCTCAGGTGGGTGT 61.530 63.158 0.00 0.00 0.00 4.16
6038 9087 1.198759 GGGAAGCTCAGGTGGGTGTA 61.199 60.000 0.00 0.00 0.00 2.90
6039 9088 0.690762 GGAAGCTCAGGTGGGTGTAA 59.309 55.000 0.00 0.00 0.00 2.41
6040 9089 1.339151 GGAAGCTCAGGTGGGTGTAAG 60.339 57.143 0.00 0.00 0.00 2.34
6041 9090 1.348036 GAAGCTCAGGTGGGTGTAAGT 59.652 52.381 0.00 0.00 0.00 2.24
6042 9091 1.435256 AGCTCAGGTGGGTGTAAGTT 58.565 50.000 0.00 0.00 0.00 2.66
6043 9092 1.774856 AGCTCAGGTGGGTGTAAGTTT 59.225 47.619 0.00 0.00 0.00 2.66
6044 9093 2.174854 AGCTCAGGTGGGTGTAAGTTTT 59.825 45.455 0.00 0.00 0.00 2.43
6045 9094 3.393278 AGCTCAGGTGGGTGTAAGTTTTA 59.607 43.478 0.00 0.00 0.00 1.52
6046 9095 4.139038 GCTCAGGTGGGTGTAAGTTTTAA 58.861 43.478 0.00 0.00 0.00 1.52
6047 9096 4.765339 GCTCAGGTGGGTGTAAGTTTTAAT 59.235 41.667 0.00 0.00 0.00 1.40
6048 9097 5.106277 GCTCAGGTGGGTGTAAGTTTTAATC 60.106 44.000 0.00 0.00 0.00 1.75
6049 9098 6.195600 TCAGGTGGGTGTAAGTTTTAATCT 57.804 37.500 0.00 0.00 0.00 2.40
6050 9099 7.319052 TCAGGTGGGTGTAAGTTTTAATCTA 57.681 36.000 0.00 0.00 0.00 1.98
6051 9100 7.163441 TCAGGTGGGTGTAAGTTTTAATCTAC 58.837 38.462 0.00 0.00 0.00 2.59
6052 9101 6.373495 CAGGTGGGTGTAAGTTTTAATCTACC 59.627 42.308 0.00 0.00 0.00 3.18
6053 9102 6.044637 AGGTGGGTGTAAGTTTTAATCTACCA 59.955 38.462 0.00 0.00 0.00 3.25
6054 9103 6.716173 GGTGGGTGTAAGTTTTAATCTACCAA 59.284 38.462 0.00 0.00 0.00 3.67
6055 9104 7.395206 GGTGGGTGTAAGTTTTAATCTACCAAT 59.605 37.037 0.00 0.00 0.00 3.16
6056 9105 8.799367 GTGGGTGTAAGTTTTAATCTACCAATT 58.201 33.333 0.00 0.00 0.00 2.32
6057 9106 9.369672 TGGGTGTAAGTTTTAATCTACCAATTT 57.630 29.630 0.00 0.00 0.00 1.82
6104 9153 6.869636 GCATACGCACTATTTGGAGACAACA 61.870 44.000 0.00 0.00 44.42 3.33
6211 9263 7.013274 TGGTTAGTCTGATTTGAAAGAAACAGG 59.987 37.037 0.00 0.00 0.00 4.00
6479 9532 3.199727 TGGAGCTGCATCCACAATAGTTA 59.800 43.478 2.72 0.00 44.56 2.24
6539 9592 2.497138 CCACAGAGTTGCACAATCTGA 58.503 47.619 23.51 0.00 42.48 3.27
6590 9647 5.103000 AGCTTGTAATGTAGTCTAGTTGCG 58.897 41.667 0.00 0.00 0.00 4.85
6636 9693 5.381174 TGTAACGTAGTCTAGTTGCACAT 57.619 39.130 0.00 0.00 45.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 0.391927 GTTGGCCGTGGCAGTATACA 60.392 55.000 13.76 0.00 44.11 2.29
147 148 2.806945 AACTACACATCCATGGGGTG 57.193 50.000 26.22 26.22 34.87 4.61
302 354 1.523758 CAGGGGCAATATACGAAGCC 58.476 55.000 0.00 0.00 46.28 4.35
303 355 1.523758 CCAGGGGCAATATACGAAGC 58.476 55.000 0.00 0.00 0.00 3.86
337 389 5.450412 CCAACAAACAGAGTTGCACATAGTT 60.450 40.000 0.00 0.00 43.74 2.24
441 493 6.998802 AGGGATATGTGCAACTTAGTCTATC 58.001 40.000 0.00 0.00 38.04 2.08
515 568 2.683152 GCAACTCTCCTCCCTACTCGTA 60.683 54.545 0.00 0.00 0.00 3.43
531 584 2.626743 ACCTAGTAGTCGTTGTGCAACT 59.373 45.455 12.44 0.00 39.08 3.16
650 703 4.152402 CGTTGGATTTCTCGTGACAAGATT 59.848 41.667 0.00 0.00 0.00 2.40
846 905 4.056125 CGGCCGCTCTGTCACTCA 62.056 66.667 14.67 0.00 0.00 3.41
916 977 6.164176 ACGACGAGAAAGACCAGAAATTAAT 58.836 36.000 0.00 0.00 0.00 1.40
917 978 5.535333 ACGACGAGAAAGACCAGAAATTAA 58.465 37.500 0.00 0.00 0.00 1.40
918 979 5.130292 ACGACGAGAAAGACCAGAAATTA 57.870 39.130 0.00 0.00 0.00 1.40
919 980 3.988517 GACGACGAGAAAGACCAGAAATT 59.011 43.478 0.00 0.00 0.00 1.82
920 981 3.576648 GACGACGAGAAAGACCAGAAAT 58.423 45.455 0.00 0.00 0.00 2.17
921 982 2.603892 CGACGACGAGAAAGACCAGAAA 60.604 50.000 0.00 0.00 42.66 2.52
922 983 1.069432 CGACGACGAGAAAGACCAGAA 60.069 52.381 0.00 0.00 42.66 3.02
923 984 0.516001 CGACGACGAGAAAGACCAGA 59.484 55.000 0.00 0.00 42.66 3.86
924 985 0.237761 ACGACGACGAGAAAGACCAG 59.762 55.000 15.32 0.00 42.66 4.00
925 986 0.236711 GACGACGACGAGAAAGACCA 59.763 55.000 15.32 0.00 42.66 4.02
926 987 0.788645 CGACGACGACGAGAAAGACC 60.789 60.000 15.32 0.00 42.66 3.85
927 988 0.110912 ACGACGACGACGAGAAAGAC 60.111 55.000 25.15 0.00 42.66 3.01
1184 1249 2.816083 CGTATTTGCCGGTCGCCA 60.816 61.111 1.90 0.00 36.24 5.69
1415 1799 1.751437 AGCAAATTAAGCTCCGGGAC 58.249 50.000 0.00 0.00 38.01 4.46
1422 1806 4.082125 AGCAGTTGGTAGCAAATTAAGCT 58.918 39.130 9.30 10.46 45.77 3.74
1443 1832 2.485479 CCCACTACCCGATTGGATCAAG 60.485 54.545 0.00 0.00 37.49 3.02
1482 1906 3.317455 TTAGCCATTGATTGCTCCCAT 57.683 42.857 0.00 0.00 39.00 4.00
1617 2185 4.471904 TCCACAGACCAGTTATAAGCTG 57.528 45.455 0.00 7.63 0.00 4.24
1671 2276 8.448615 TGAAGTGAAGTATACATATACCGATCG 58.551 37.037 8.51 8.51 39.42 3.69
1691 2389 3.361051 CGCGATAATCGTGTCATGAAGTG 60.361 47.826 0.00 0.00 44.47 3.16
1705 2413 2.560504 TCCTGCAACAATCGCGATAAT 58.439 42.857 24.00 10.81 0.00 1.28
1737 2448 3.926616 TCACTCTCCCAAGATTCGTTTC 58.073 45.455 0.00 0.00 0.00 2.78
1762 2473 1.280421 ACAGCTTGGGTCCATTCTCTC 59.720 52.381 0.00 0.00 0.00 3.20
1864 2577 7.195646 CACTTGCACTGTGAATTTAGAAAGAA 58.804 34.615 12.86 0.00 37.60 2.52
1986 2739 4.753107 GGTTCTCGTACAAACTTGATGGAA 59.247 41.667 0.00 0.00 0.00 3.53
2117 2870 1.863454 CTGTGCTATCATCGGTCTTGC 59.137 52.381 0.00 0.00 0.00 4.01
2371 3132 5.184479 GTCATGGGCATGTCTATTGCAATAT 59.816 40.000 19.17 3.08 41.95 1.28
2390 3151 1.226101 GACCGCATTGCACGTCATG 60.226 57.895 16.84 0.00 30.83 3.07
2447 3208 2.789409 AACTGTCTGCTATTCCCACC 57.211 50.000 0.00 0.00 0.00 4.61
2485 3246 2.278206 CGACCCTCATGCGAGTCG 60.278 66.667 8.54 8.54 37.59 4.18
2486 3247 2.583593 GCGACCCTCATGCGAGTC 60.584 66.667 0.00 0.00 37.59 3.36
2782 3796 7.861176 TCACGCAAAAAGTATAAATGAAACC 57.139 32.000 0.00 0.00 0.00 3.27
2803 3818 7.652300 TGTTGTGATAGTTCAGTATGTTCAC 57.348 36.000 0.00 0.00 37.40 3.18
2831 3848 8.932434 TTAGATCTACTTAGATGAGTGCTGAT 57.068 34.615 0.67 0.00 42.79 2.90
2840 3862 9.638239 GGCTGAAGAATTAGATCTACTTAGATG 57.362 37.037 0.67 0.00 42.79 2.90
2847 3869 5.593010 ACACGGCTGAAGAATTAGATCTAC 58.407 41.667 0.67 0.00 0.00 2.59
2854 3876 3.055458 TCCATGACACGGCTGAAGAATTA 60.055 43.478 0.00 0.00 0.00 1.40
2889 3916 3.018856 TGCAGGGATCACAATAGCTTTG 58.981 45.455 0.00 0.00 0.00 2.77
2901 3928 0.107459 GGTCTCCAGTTGCAGGGATC 60.107 60.000 4.54 0.00 31.57 3.36
2904 3931 0.322008 GAAGGTCTCCAGTTGCAGGG 60.322 60.000 0.00 0.00 0.00 4.45
3016 4043 8.094798 ACACGAAGTCATTTATTATTGTGTGT 57.905 30.769 0.00 0.00 41.61 3.72
3024 4051 6.312918 GCCTCTGAACACGAAGTCATTTATTA 59.687 38.462 0.00 0.00 41.61 0.98
3047 4077 7.494298 TGTTAAAGTTTTCATGGAAAGAAAGCC 59.506 33.333 0.00 0.00 37.03 4.35
3076 4107 8.079203 ACAAAATCACGTATGTTTTGCAATCTA 58.921 29.630 21.90 0.00 43.21 1.98
3118 4150 5.754782 TGCAAATCCAAGATATACAGGTGT 58.245 37.500 0.00 0.00 0.00 4.16
3121 4153 5.380043 ACCTGCAAATCCAAGATATACAGG 58.620 41.667 13.81 13.81 46.02 4.00
3124 4156 6.128445 CGATGACCTGCAAATCCAAGATATAC 60.128 42.308 0.00 0.00 0.00 1.47
3128 4160 2.947652 CGATGACCTGCAAATCCAAGAT 59.052 45.455 0.00 0.00 0.00 2.40
3149 4183 9.364989 GCAGATTGATAAACTGGAGAGTATATC 57.635 37.037 0.00 0.00 33.00 1.63
3240 4277 5.613358 AAGATAAAAGGAAACAGCGTCAG 57.387 39.130 0.00 0.00 0.00 3.51
3247 4284 6.045955 GTGCAACCAAAGATAAAAGGAAACA 58.954 36.000 0.00 0.00 0.00 2.83
3642 4690 6.773638 ACTGGATACCTAAATAAGCTCATGG 58.226 40.000 0.00 0.00 0.00 3.66
3740 4860 7.961326 ATTTAATATGCAGGGACTTTTGACT 57.039 32.000 0.00 0.00 34.60 3.41
3850 4974 0.321671 TCACCAAGCTAGGCACAGAC 59.678 55.000 0.00 0.00 0.00 3.51
3993 5284 0.817654 GGCAAGTACCCTGCAATTCC 59.182 55.000 16.86 0.00 0.00 3.01
3994 5285 1.202348 GTGGCAAGTACCCTGCAATTC 59.798 52.381 16.86 3.19 0.00 2.17
4060 5351 3.775261 ATGGGTTTGTAACAGGTACGT 57.225 42.857 0.00 0.00 35.23 3.57
4204 5495 7.448469 ACAATACTTACATATGGATTTCCCTGC 59.552 37.037 7.80 0.00 35.38 4.85
4329 5620 5.893824 AGCACCAAAATATAAAGGGAAGAGG 59.106 40.000 0.00 0.00 0.00 3.69
4356 5647 3.198068 GTCAGCATTGAGAAGCCGATTA 58.802 45.455 0.00 0.00 32.98 1.75
4428 5719 6.539649 TTGAAAAACTGAGGTATTCGACTG 57.460 37.500 0.00 0.00 0.00 3.51
4525 7419 5.182001 CCACTGGAAAACTTGGAGAACATAG 59.818 44.000 0.00 0.00 0.00 2.23
4582 7476 9.371136 GTCAGAGAACAATAACATGTCTGAATA 57.629 33.333 0.00 0.00 35.05 1.75
4586 7480 7.606858 ATGTCAGAGAACAATAACATGTCTG 57.393 36.000 0.00 0.00 31.81 3.51
4650 7604 4.762251 AGCAAAGGGAACATTGACTAAGAC 59.238 41.667 0.00 0.00 0.00 3.01
4735 7690 9.965748 GTACTGTTACAACGTGTTAAGTTTTTA 57.034 29.630 0.00 0.00 0.00 1.52
4847 7803 7.794683 ACCTTAATCCCTCCAAGATTCATAGTA 59.205 37.037 0.00 0.00 35.59 1.82
4909 7870 6.380560 TGGTTTCATGAAATGCAAGGATGATA 59.619 34.615 23.05 0.00 46.21 2.15
4954 7918 2.797156 CTCCACTGAACTTGTCTGTTCG 59.203 50.000 0.00 0.00 46.59 3.95
5136 8100 1.280133 TGAGGTTCTTCTGGATGGCTG 59.720 52.381 0.00 0.00 0.00 4.85
5356 8350 0.630673 ATAATTGGCCCTCAGGTGCA 59.369 50.000 0.00 0.00 34.57 4.57
5358 8352 2.441001 AGAGATAATTGGCCCTCAGGTG 59.559 50.000 0.00 0.00 34.57 4.00
5424 8432 4.335315 CCATCGCTTATGTAACACACCATT 59.665 41.667 0.00 0.00 33.34 3.16
5562 8592 6.391227 AAAACCTTCAAACATACAGAGTGG 57.609 37.500 0.00 0.00 0.00 4.00
5630 8670 3.282021 ACATAATGCCGCTCATCTTGTT 58.718 40.909 0.00 0.00 33.40 2.83
5642 8682 6.925610 TTTGATCTGACACTACATAATGCC 57.074 37.500 0.00 0.00 0.00 4.40
5680 8725 9.301153 CATTAGTTTGCAAGAGTAACAAAAAGT 57.699 29.630 0.00 0.00 35.25 2.66
5681 8726 9.515020 TCATTAGTTTGCAAGAGTAACAAAAAG 57.485 29.630 0.00 0.00 35.25 2.27
5788 8837 8.938801 TGACTGGTATATATGGAAATTTGCAT 57.061 30.769 25.65 25.65 42.16 3.96
5789 8838 8.795513 CATGACTGGTATATATGGAAATTTGCA 58.204 33.333 15.13 15.13 0.00 4.08
5790 8839 7.756722 GCATGACTGGTATATATGGAAATTTGC 59.243 37.037 2.22 2.22 0.00 3.68
5791 8840 8.795513 TGCATGACTGGTATATATGGAAATTTG 58.204 33.333 0.00 0.00 0.00 2.32
5792 8841 8.938801 TGCATGACTGGTATATATGGAAATTT 57.061 30.769 0.00 0.00 0.00 1.82
5793 8842 8.963725 CATGCATGACTGGTATATATGGAAATT 58.036 33.333 22.59 0.00 0.00 1.82
5794 8843 8.330993 TCATGCATGACTGGTATATATGGAAAT 58.669 33.333 25.42 0.00 0.00 2.17
5795 8844 7.688343 TCATGCATGACTGGTATATATGGAAA 58.312 34.615 25.42 0.00 0.00 3.13
5796 8845 7.256494 TCATGCATGACTGGTATATATGGAA 57.744 36.000 25.42 0.00 0.00 3.53
5797 8846 6.872585 TCATGCATGACTGGTATATATGGA 57.127 37.500 25.42 0.00 0.00 3.41
5798 8847 6.709397 GGATCATGCATGACTGGTATATATGG 59.291 42.308 30.92 0.00 40.03 2.74
5799 8848 6.709397 GGGATCATGCATGACTGGTATATATG 59.291 42.308 30.92 0.00 40.03 1.78
5800 8849 6.387807 TGGGATCATGCATGACTGGTATATAT 59.612 38.462 30.92 11.58 40.03 0.86
5801 8850 5.725822 TGGGATCATGCATGACTGGTATATA 59.274 40.000 30.92 5.67 40.03 0.86
5802 8851 4.537288 TGGGATCATGCATGACTGGTATAT 59.463 41.667 30.92 13.12 40.03 0.86
5803 8852 3.909364 TGGGATCATGCATGACTGGTATA 59.091 43.478 30.92 11.38 40.03 1.47
5804 8853 2.712627 TGGGATCATGCATGACTGGTAT 59.287 45.455 30.92 14.67 40.03 2.73
5805 8854 2.126057 TGGGATCATGCATGACTGGTA 58.874 47.619 30.92 13.91 40.03 3.25
5806 8855 0.921166 TGGGATCATGCATGACTGGT 59.079 50.000 30.92 15.84 40.03 4.00
5807 8856 1.315690 GTGGGATCATGCATGACTGG 58.684 55.000 30.92 2.73 40.03 4.00
5808 8857 0.942252 CGTGGGATCATGCATGACTG 59.058 55.000 30.92 13.22 40.03 3.51
5809 8858 0.543277 ACGTGGGATCATGCATGACT 59.457 50.000 30.92 19.39 40.03 3.41
5810 8859 0.940126 GACGTGGGATCATGCATGAC 59.060 55.000 30.92 22.39 40.03 3.06
5811 8860 0.832626 AGACGTGGGATCATGCATGA 59.167 50.000 30.47 30.47 41.70 3.07
5812 8861 0.942252 CAGACGTGGGATCATGCATG 59.058 55.000 21.07 21.07 33.32 4.06
5813 8862 0.832626 TCAGACGTGGGATCATGCAT 59.167 50.000 0.00 0.00 33.32 3.96
5814 8863 0.612744 TTCAGACGTGGGATCATGCA 59.387 50.000 0.00 0.00 33.32 3.96
5815 8864 1.667724 CTTTCAGACGTGGGATCATGC 59.332 52.381 0.00 0.00 33.32 4.06
5816 8865 3.251479 TCTTTCAGACGTGGGATCATG 57.749 47.619 0.00 0.00 36.05 3.07
5817 8866 4.494091 AATCTTTCAGACGTGGGATCAT 57.506 40.909 0.00 0.00 0.00 2.45
5818 8867 3.981071 AATCTTTCAGACGTGGGATCA 57.019 42.857 0.00 0.00 0.00 2.92
5819 8868 7.210873 AGTATTAATCTTTCAGACGTGGGATC 58.789 38.462 0.00 0.00 0.00 3.36
5820 8869 7.125792 AGTATTAATCTTTCAGACGTGGGAT 57.874 36.000 0.00 0.00 0.00 3.85
5821 8870 6.540438 AGTATTAATCTTTCAGACGTGGGA 57.460 37.500 0.00 0.00 0.00 4.37
5822 8871 7.762615 TGTAAGTATTAATCTTTCAGACGTGGG 59.237 37.037 0.00 0.00 28.70 4.61
5823 8872 8.697846 TGTAAGTATTAATCTTTCAGACGTGG 57.302 34.615 0.00 0.00 28.70 4.94
5825 8874 9.530633 GGATGTAAGTATTAATCTTTCAGACGT 57.469 33.333 0.00 0.00 28.70 4.34
5826 8875 9.751542 AGGATGTAAGTATTAATCTTTCAGACG 57.248 33.333 0.00 0.00 28.70 4.18
5829 8878 9.197694 CGGAGGATGTAAGTATTAATCTTTCAG 57.802 37.037 0.00 0.00 28.70 3.02
5830 8879 8.701895 ACGGAGGATGTAAGTATTAATCTTTCA 58.298 33.333 0.00 1.01 28.70 2.69
5831 8880 9.543783 AACGGAGGATGTAAGTATTAATCTTTC 57.456 33.333 0.00 0.00 28.70 2.62
5832 8881 9.543783 GAACGGAGGATGTAAGTATTAATCTTT 57.456 33.333 0.00 0.00 28.70 2.52
5833 8882 8.148999 GGAACGGAGGATGTAAGTATTAATCTT 58.851 37.037 0.00 0.00 28.70 2.40
5834 8883 7.289317 TGGAACGGAGGATGTAAGTATTAATCT 59.711 37.037 0.00 0.00 28.70 2.40
5835 8884 7.439381 TGGAACGGAGGATGTAAGTATTAATC 58.561 38.462 0.00 0.00 28.70 1.75
5836 8885 7.369551 TGGAACGGAGGATGTAAGTATTAAT 57.630 36.000 0.00 0.00 28.70 1.40
5837 8886 6.795144 TGGAACGGAGGATGTAAGTATTAA 57.205 37.500 0.00 0.00 28.70 1.40
5838 8887 6.795144 TTGGAACGGAGGATGTAAGTATTA 57.205 37.500 0.00 0.00 0.00 0.98
5839 8888 5.687166 TTGGAACGGAGGATGTAAGTATT 57.313 39.130 0.00 0.00 0.00 1.89
5840 8889 5.687166 TTTGGAACGGAGGATGTAAGTAT 57.313 39.130 0.00 0.00 0.00 2.12
5841 8890 5.486735 TTTTGGAACGGAGGATGTAAGTA 57.513 39.130 0.00 0.00 0.00 2.24
5842 8891 4.360951 TTTTGGAACGGAGGATGTAAGT 57.639 40.909 0.00 0.00 0.00 2.24
5843 8892 8.721478 CATATATTTTGGAACGGAGGATGTAAG 58.279 37.037 0.00 0.00 0.00 2.34
5844 8893 8.215050 ACATATATTTTGGAACGGAGGATGTAA 58.785 33.333 0.00 0.00 0.00 2.41
5845 8894 7.741785 ACATATATTTTGGAACGGAGGATGTA 58.258 34.615 0.00 0.00 0.00 2.29
5846 8895 6.601332 ACATATATTTTGGAACGGAGGATGT 58.399 36.000 0.00 0.00 0.00 3.06
5847 8896 6.128553 CGACATATATTTTGGAACGGAGGATG 60.129 42.308 0.00 0.00 0.00 3.51
5848 8897 5.932303 CGACATATATTTTGGAACGGAGGAT 59.068 40.000 0.00 0.00 0.00 3.24
5849 8898 5.163385 ACGACATATATTTTGGAACGGAGGA 60.163 40.000 0.00 0.00 0.00 3.71
5850 8899 5.054477 ACGACATATATTTTGGAACGGAGG 58.946 41.667 0.00 0.00 0.00 4.30
5851 8900 6.479001 AGAACGACATATATTTTGGAACGGAG 59.521 38.462 0.00 0.00 0.00 4.63
5852 8901 6.256975 CAGAACGACATATATTTTGGAACGGA 59.743 38.462 0.00 0.00 0.00 4.69
5853 8902 6.418956 CAGAACGACATATATTTTGGAACGG 58.581 40.000 0.00 0.00 0.00 4.44
5854 8903 6.036735 ACCAGAACGACATATATTTTGGAACG 59.963 38.462 0.00 0.00 0.00 3.95
5855 8904 7.316544 ACCAGAACGACATATATTTTGGAAC 57.683 36.000 0.00 0.00 0.00 3.62
5856 8905 9.104965 CTTACCAGAACGACATATATTTTGGAA 57.895 33.333 0.00 0.00 0.00 3.53
5857 8906 7.225931 GCTTACCAGAACGACATATATTTTGGA 59.774 37.037 0.00 0.00 0.00 3.53
5858 8907 7.226720 AGCTTACCAGAACGACATATATTTTGG 59.773 37.037 0.00 0.00 0.00 3.28
5859 8908 8.142994 AGCTTACCAGAACGACATATATTTTG 57.857 34.615 0.00 0.00 0.00 2.44
5860 8909 9.826574 TTAGCTTACCAGAACGACATATATTTT 57.173 29.630 0.00 0.00 0.00 1.82
5861 8910 9.477484 CTTAGCTTACCAGAACGACATATATTT 57.523 33.333 0.00 0.00 0.00 1.40
5862 8911 7.599245 GCTTAGCTTACCAGAACGACATATATT 59.401 37.037 0.00 0.00 0.00 1.28
5863 8912 7.039644 AGCTTAGCTTACCAGAACGACATATAT 60.040 37.037 0.00 0.00 33.89 0.86
5864 8913 6.264744 AGCTTAGCTTACCAGAACGACATATA 59.735 38.462 0.00 0.00 33.89 0.86
5865 8914 5.069251 AGCTTAGCTTACCAGAACGACATAT 59.931 40.000 0.00 0.00 33.89 1.78
5866 8915 4.401519 AGCTTAGCTTACCAGAACGACATA 59.598 41.667 0.00 0.00 33.89 2.29
5867 8916 3.195825 AGCTTAGCTTACCAGAACGACAT 59.804 43.478 0.00 0.00 33.89 3.06
5868 8917 2.561419 AGCTTAGCTTACCAGAACGACA 59.439 45.455 0.00 0.00 33.89 4.35
5869 8918 3.233684 AGCTTAGCTTACCAGAACGAC 57.766 47.619 0.00 0.00 33.89 4.34
5870 8919 4.015084 ACTAGCTTAGCTTACCAGAACGA 58.985 43.478 13.44 0.00 40.44 3.85
5871 8920 4.096682 AGACTAGCTTAGCTTACCAGAACG 59.903 45.833 13.44 0.00 40.44 3.95
5872 8921 5.585820 AGACTAGCTTAGCTTACCAGAAC 57.414 43.478 13.44 4.17 40.44 3.01
5873 8922 6.424883 ACTAGACTAGCTTAGCTTACCAGAA 58.575 40.000 13.44 0.00 40.44 3.02
5874 8923 6.003859 ACTAGACTAGCTTAGCTTACCAGA 57.996 41.667 13.44 0.00 40.44 3.86
5875 8924 7.218614 TCTACTAGACTAGCTTAGCTTACCAG 58.781 42.308 13.44 6.08 40.44 4.00
5876 8925 7.134362 TCTACTAGACTAGCTTAGCTTACCA 57.866 40.000 13.44 0.00 40.44 3.25
5877 8926 7.307337 CGTTCTACTAGACTAGCTTAGCTTACC 60.307 44.444 13.44 1.61 40.44 2.85
5878 8927 7.437862 TCGTTCTACTAGACTAGCTTAGCTTAC 59.562 40.741 13.44 4.51 40.44 2.34
5879 8928 7.437862 GTCGTTCTACTAGACTAGCTTAGCTTA 59.562 40.741 13.44 0.00 40.44 3.09
5880 8929 6.258507 GTCGTTCTACTAGACTAGCTTAGCTT 59.741 42.308 13.44 0.00 40.44 3.74
5881 8930 5.754890 GTCGTTCTACTAGACTAGCTTAGCT 59.245 44.000 12.67 12.67 43.41 3.32
5882 8931 5.523188 TGTCGTTCTACTAGACTAGCTTAGC 59.477 44.000 9.52 0.00 36.01 3.09
5883 8932 7.225145 ACATGTCGTTCTACTAGACTAGCTTAG 59.775 40.741 9.52 5.28 36.01 2.18
5884 8933 7.046652 ACATGTCGTTCTACTAGACTAGCTTA 58.953 38.462 9.52 0.00 36.01 3.09
5885 8934 5.881443 ACATGTCGTTCTACTAGACTAGCTT 59.119 40.000 9.52 0.00 36.01 3.74
5886 8935 5.430007 ACATGTCGTTCTACTAGACTAGCT 58.570 41.667 9.52 0.00 36.01 3.32
5887 8936 5.738118 ACATGTCGTTCTACTAGACTAGC 57.262 43.478 9.52 0.00 36.01 3.42
5889 8938 9.999009 CAAAATACATGTCGTTCTACTAGACTA 57.001 33.333 0.00 0.00 36.01 2.59
5890 8939 8.737175 TCAAAATACATGTCGTTCTACTAGACT 58.263 33.333 0.00 0.00 36.01 3.24
5891 8940 8.906636 TCAAAATACATGTCGTTCTACTAGAC 57.093 34.615 0.00 0.00 35.61 2.59
5892 8941 9.917129 TTTCAAAATACATGTCGTTCTACTAGA 57.083 29.630 0.00 0.00 0.00 2.43
5893 8942 9.953825 GTTTCAAAATACATGTCGTTCTACTAG 57.046 33.333 0.00 0.00 0.00 2.57
5894 8943 9.478768 TGTTTCAAAATACATGTCGTTCTACTA 57.521 29.630 0.00 0.00 0.00 1.82
5895 8944 8.373048 TGTTTCAAAATACATGTCGTTCTACT 57.627 30.769 0.00 0.00 0.00 2.57
5896 8945 8.492748 TCTGTTTCAAAATACATGTCGTTCTAC 58.507 33.333 0.00 0.00 0.00 2.59
5897 8946 8.596271 TCTGTTTCAAAATACATGTCGTTCTA 57.404 30.769 0.00 0.00 0.00 2.10
5898 8947 7.307989 CCTCTGTTTCAAAATACATGTCGTTCT 60.308 37.037 0.00 0.00 0.00 3.01
5899 8948 6.797033 CCTCTGTTTCAAAATACATGTCGTTC 59.203 38.462 0.00 0.00 0.00 3.95
5900 8949 6.262273 ACCTCTGTTTCAAAATACATGTCGTT 59.738 34.615 0.00 0.00 0.00 3.85
5901 8950 5.763204 ACCTCTGTTTCAAAATACATGTCGT 59.237 36.000 0.00 0.00 0.00 4.34
5902 8951 6.241207 ACCTCTGTTTCAAAATACATGTCG 57.759 37.500 0.00 0.00 0.00 4.35
5903 8952 8.324163 ACTACCTCTGTTTCAAAATACATGTC 57.676 34.615 0.00 0.00 0.00 3.06
5904 8953 9.436957 CTACTACCTCTGTTTCAAAATACATGT 57.563 33.333 2.69 2.69 0.00 3.21
5905 8954 9.653287 TCTACTACCTCTGTTTCAAAATACATG 57.347 33.333 0.00 0.00 0.00 3.21
5914 8963 9.653287 CAAAACATATCTACTACCTCTGTTTCA 57.347 33.333 0.00 0.00 35.09 2.69
5915 8964 9.871238 TCAAAACATATCTACTACCTCTGTTTC 57.129 33.333 0.00 0.00 35.09 2.78
5918 8967 9.201989 TGATCAAAACATATCTACTACCTCTGT 57.798 33.333 0.00 0.00 0.00 3.41
5951 9000 9.295825 TCACTGATATGGATTTTGTTTTACAGT 57.704 29.630 0.00 0.00 34.74 3.55
5952 9001 9.559958 GTCACTGATATGGATTTTGTTTTACAG 57.440 33.333 0.00 0.00 0.00 2.74
5953 9002 9.295825 AGTCACTGATATGGATTTTGTTTTACA 57.704 29.630 0.00 0.00 0.00 2.41
5954 9003 9.774742 GAGTCACTGATATGGATTTTGTTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
5955 9004 9.739276 AGAGTCACTGATATGGATTTTGTTTTA 57.261 29.630 0.00 0.00 0.00 1.52
5956 9005 8.641498 AGAGTCACTGATATGGATTTTGTTTT 57.359 30.769 0.00 0.00 0.00 2.43
5973 9022 2.355126 CGTGCGTGCAGAGTCACT 60.355 61.111 0.00 0.00 34.92 3.41
5974 9023 4.064491 GCGTGCGTGCAGAGTCAC 62.064 66.667 0.00 0.00 34.15 3.67
5991 9040 2.660258 AATTAGCCGCCTACGCAGGG 62.660 60.000 3.28 0.00 42.88 4.45
5992 9041 0.814010 AAATTAGCCGCCTACGCAGG 60.814 55.000 0.00 0.00 45.77 4.85
5993 9042 0.304705 CAAATTAGCCGCCTACGCAG 59.695 55.000 0.00 0.00 38.22 5.18
5994 9043 0.391927 ACAAATTAGCCGCCTACGCA 60.392 50.000 0.00 0.00 38.22 5.24
5995 9044 0.303796 GACAAATTAGCCGCCTACGC 59.696 55.000 0.00 0.00 38.22 4.42
5996 9045 1.935933 AGACAAATTAGCCGCCTACG 58.064 50.000 0.00 0.00 39.67 3.51
5997 9046 3.007635 ACAAGACAAATTAGCCGCCTAC 58.992 45.455 0.00 0.00 0.00 3.18
5998 9047 3.006940 CACAAGACAAATTAGCCGCCTA 58.993 45.455 0.00 0.00 0.00 3.93
5999 9048 1.812571 CACAAGACAAATTAGCCGCCT 59.187 47.619 0.00 0.00 0.00 5.52
6000 9049 1.135402 CCACAAGACAAATTAGCCGCC 60.135 52.381 0.00 0.00 0.00 6.13
6001 9050 1.135402 CCCACAAGACAAATTAGCCGC 60.135 52.381 0.00 0.00 0.00 6.53
6002 9051 2.432444 TCCCACAAGACAAATTAGCCG 58.568 47.619 0.00 0.00 0.00 5.52
6003 9052 3.367395 GCTTCCCACAAGACAAATTAGCC 60.367 47.826 0.00 0.00 0.00 3.93
6004 9053 3.507622 AGCTTCCCACAAGACAAATTAGC 59.492 43.478 0.00 0.00 0.00 3.09
6005 9054 4.761739 TGAGCTTCCCACAAGACAAATTAG 59.238 41.667 0.00 0.00 0.00 1.73
6006 9055 4.724399 TGAGCTTCCCACAAGACAAATTA 58.276 39.130 0.00 0.00 0.00 1.40
6007 9056 3.565307 TGAGCTTCCCACAAGACAAATT 58.435 40.909 0.00 0.00 0.00 1.82
6008 9057 3.152341 CTGAGCTTCCCACAAGACAAAT 58.848 45.455 0.00 0.00 0.00 2.32
6009 9058 2.575532 CTGAGCTTCCCACAAGACAAA 58.424 47.619 0.00 0.00 0.00 2.83
6010 9059 1.202806 CCTGAGCTTCCCACAAGACAA 60.203 52.381 0.00 0.00 0.00 3.18
6011 9060 0.397941 CCTGAGCTTCCCACAAGACA 59.602 55.000 0.00 0.00 0.00 3.41
6012 9061 0.398318 ACCTGAGCTTCCCACAAGAC 59.602 55.000 0.00 0.00 0.00 3.01
6013 9062 0.397941 CACCTGAGCTTCCCACAAGA 59.602 55.000 0.00 0.00 0.00 3.02
6014 9063 0.607489 CCACCTGAGCTTCCCACAAG 60.607 60.000 0.00 0.00 0.00 3.16
6015 9064 1.455849 CCACCTGAGCTTCCCACAA 59.544 57.895 0.00 0.00 0.00 3.33
6016 9065 2.528818 CCCACCTGAGCTTCCCACA 61.529 63.158 0.00 0.00 0.00 4.17
6017 9066 2.352805 CCCACCTGAGCTTCCCAC 59.647 66.667 0.00 0.00 0.00 4.61
6018 9067 2.121963 ACCCACCTGAGCTTCCCA 60.122 61.111 0.00 0.00 0.00 4.37
6019 9068 1.198759 TACACCCACCTGAGCTTCCC 61.199 60.000 0.00 0.00 0.00 3.97
6020 9069 0.690762 TTACACCCACCTGAGCTTCC 59.309 55.000 0.00 0.00 0.00 3.46
6021 9070 1.348036 ACTTACACCCACCTGAGCTTC 59.652 52.381 0.00 0.00 0.00 3.86
6022 9071 1.435256 ACTTACACCCACCTGAGCTT 58.565 50.000 0.00 0.00 0.00 3.74
6023 9072 1.435256 AACTTACACCCACCTGAGCT 58.565 50.000 0.00 0.00 0.00 4.09
6024 9073 2.271944 AAACTTACACCCACCTGAGC 57.728 50.000 0.00 0.00 0.00 4.26
6025 9074 6.238648 AGATTAAAACTTACACCCACCTGAG 58.761 40.000 0.00 0.00 0.00 3.35
6026 9075 6.195600 AGATTAAAACTTACACCCACCTGA 57.804 37.500 0.00 0.00 0.00 3.86
6027 9076 6.373495 GGTAGATTAAAACTTACACCCACCTG 59.627 42.308 0.00 0.00 0.00 4.00
6028 9077 6.044637 TGGTAGATTAAAACTTACACCCACCT 59.955 38.462 0.00 0.00 0.00 4.00
6029 9078 6.240145 TGGTAGATTAAAACTTACACCCACC 58.760 40.000 0.00 0.00 0.00 4.61
6030 9079 7.748691 TTGGTAGATTAAAACTTACACCCAC 57.251 36.000 0.00 0.00 0.00 4.61
6031 9080 8.943594 AATTGGTAGATTAAAACTTACACCCA 57.056 30.769 0.00 0.00 0.00 4.51
6038 9087 9.772973 GGTTGGAAAATTGGTAGATTAAAACTT 57.227 29.630 0.00 0.00 0.00 2.66
6039 9088 9.154632 AGGTTGGAAAATTGGTAGATTAAAACT 57.845 29.630 0.00 0.00 0.00 2.66
6046 9095 9.547279 AGATTTTAGGTTGGAAAATTGGTAGAT 57.453 29.630 0.00 0.00 36.78 1.98
6047 9096 8.950007 AGATTTTAGGTTGGAAAATTGGTAGA 57.050 30.769 0.00 0.00 36.78 2.59
6055 9104 9.320352 GCACTTTTTAGATTTTAGGTTGGAAAA 57.680 29.630 0.00 0.00 0.00 2.29
6056 9105 8.478877 TGCACTTTTTAGATTTTAGGTTGGAAA 58.521 29.630 0.00 0.00 0.00 3.13
6057 9106 8.012957 TGCACTTTTTAGATTTTAGGTTGGAA 57.987 30.769 0.00 0.00 0.00 3.53
6058 9107 7.589958 TGCACTTTTTAGATTTTAGGTTGGA 57.410 32.000 0.00 0.00 0.00 3.53
6059 9108 9.353999 GTATGCACTTTTTAGATTTTAGGTTGG 57.646 33.333 0.00 0.00 0.00 3.77
6060 9109 9.061610 CGTATGCACTTTTTAGATTTTAGGTTG 57.938 33.333 0.00 0.00 0.00 3.77
6290 9342 8.555166 TCGTCACAAAGAATTTAACAATGAAC 57.445 30.769 0.00 0.00 35.03 3.18
6295 9347 8.378172 AGATCTCGTCACAAAGAATTTAACAA 57.622 30.769 0.00 0.00 35.03 2.83
6539 9592 8.585018 TGACAATTCATATGTGACTATACGGAT 58.415 33.333 1.90 0.00 33.11 4.18
6590 9647 5.894807 AGCCAACTAAACATCAATGTATGC 58.105 37.500 0.00 0.00 40.80 3.14
6636 9693 5.565509 TCCTGCCAACTAAACATCAATGTA 58.434 37.500 0.00 0.00 40.80 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.