Multiple sequence alignment - TraesCS5A01G455000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G455000 chr5A 100.000 4222 0 0 414 4635 635771439 635775660 0.000000e+00 7797.0
1 TraesCS5A01G455000 chr5A 100.000 455 0 0 4937 5391 635775962 635776416 0.000000e+00 841.0
2 TraesCS5A01G455000 chr5A 92.800 125 9 0 961 1085 489497653 489497529 1.190000e-41 182.0
3 TraesCS5A01G455000 chr5A 100.000 88 0 0 1 88 635771026 635771113 4.320000e-36 163.0
4 TraesCS5A01G455000 chr5D 94.804 2887 78 19 1784 4635 508112166 508115015 0.000000e+00 4434.0
5 TraesCS5A01G455000 chr5D 89.035 1368 88 32 423 1738 508110424 508111781 0.000000e+00 1639.0
6 TraesCS5A01G455000 chr5D 89.348 460 18 13 4937 5391 508115105 508115538 2.840000e-152 549.0
7 TraesCS5A01G455000 chr5D 95.455 88 1 1 1 88 508110251 508110335 2.620000e-28 137.0
8 TraesCS5A01G455000 chr5D 91.071 56 5 0 1009 1064 380840908 380840963 5.790000e-10 76.8
9 TraesCS5A01G455000 chr5D 100.000 32 0 0 1733 1764 508112133 508112164 5.830000e-05 60.2
10 TraesCS5A01G455000 chr5B 93.060 2320 95 19 1733 4026 638840769 638838490 0.000000e+00 3332.0
11 TraesCS5A01G455000 chr5B 87.388 1007 66 29 776 1738 638842123 638841134 0.000000e+00 1099.0
12 TraesCS5A01G455000 chr5B 87.775 409 35 7 4187 4584 638838381 638837977 1.060000e-126 464.0
13 TraesCS5A01G455000 chr5B 89.241 316 20 7 423 736 638842426 638842123 3.050000e-102 383.0
14 TraesCS5A01G455000 chr6B 92.857 126 9 0 961 1086 699123992 699124117 3.320000e-42 183.0
15 TraesCS5A01G455000 chr6B 84.112 107 16 1 3468 3573 287149503 287149397 9.550000e-18 102.0
16 TraesCS5A01G455000 chr4A 92.857 126 9 0 961 1086 245814923 245814798 3.320000e-42 183.0
17 TraesCS5A01G455000 chr1B 92.000 125 10 0 961 1085 665781884 665781760 5.550000e-40 176.0
18 TraesCS5A01G455000 chr6A 91.270 126 11 0 961 1086 198254 198129 7.180000e-39 172.0
19 TraesCS5A01G455000 chr6A 85.185 108 15 1 3468 3574 214179145 214179252 5.710000e-20 110.0
20 TraesCS5A01G455000 chr2A 90.476 126 12 0 961 1086 40760664 40760789 3.340000e-37 167.0
21 TraesCS5A01G455000 chr6D 84.259 108 16 1 3468 3574 157816568 157816461 2.660000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G455000 chr5A 635771026 635776416 5390 False 2933.666667 7797 100.0000 1 5391 3 chr5A.!!$F1 5390
1 TraesCS5A01G455000 chr5D 508110251 508115538 5287 False 1363.840000 4434 93.7284 1 5391 5 chr5D.!!$F2 5390
2 TraesCS5A01G455000 chr5B 638837977 638842426 4449 True 1319.500000 3332 89.3660 423 4584 4 chr5B.!!$R1 4161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 868 0.038744 AGCTGGTTCATCTTGGGTGG 59.961 55.0 0.00 0.0 0.00 4.61 F
1579 1644 0.529337 CTTCGCGAGGAGATGTGCAT 60.529 55.0 13.72 0.0 39.93 3.96 F
2376 2850 0.105039 CTTAAGCTAGCCCCACGGAG 59.895 60.0 12.13 0.0 0.00 4.63 F
3460 3955 1.407434 TACGTAACTTTGACCGCACG 58.593 50.0 0.00 0.0 35.62 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2437 1.072965 ACTTCAGGAGCAAGGAACAGG 59.927 52.381 0.00 0.00 0.00 4.00 R
3218 3711 0.738389 AGGTTTTCCACACAGTTGCG 59.262 50.000 0.00 0.00 43.73 4.85 R
4146 4677 1.473434 GCCAACAGGTCCTCCTATTCG 60.473 57.143 0.00 0.00 43.07 3.34 R
5371 5916 1.057822 CGCTGACGAACATTGCTCG 59.942 57.895 7.86 7.86 43.93 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
454 455 4.008933 GCACTCCCTCCTGCGTGT 62.009 66.667 0.00 0.00 0.00 4.49
455 456 2.262915 CACTCCCTCCTGCGTGTC 59.737 66.667 0.00 0.00 0.00 3.67
457 458 1.979693 ACTCCCTCCTGCGTGTCTC 60.980 63.158 0.00 0.00 0.00 3.36
472 473 1.815613 TGTCTCTCTGCCTTTCTCTCG 59.184 52.381 0.00 0.00 0.00 4.04
645 646 0.741915 GTTTTTCGGTGGTTGCTGGA 59.258 50.000 0.00 0.00 0.00 3.86
736 742 0.593128 GCTCACGCAAGGTCACATTT 59.407 50.000 0.00 0.00 46.39 2.32
737 743 1.001378 GCTCACGCAAGGTCACATTTT 60.001 47.619 0.00 0.00 46.39 1.82
739 745 3.044986 CTCACGCAAGGTCACATTTTTG 58.955 45.455 0.00 0.00 46.39 2.44
754 778 2.472695 TTTTGGCAGCGATGTAGTCT 57.527 45.000 1.22 0.00 0.00 3.24
755 779 1.725641 TTTGGCAGCGATGTAGTCTG 58.274 50.000 1.22 0.00 0.00 3.51
756 780 0.108186 TTGGCAGCGATGTAGTCTGG 60.108 55.000 1.22 0.00 0.00 3.86
757 781 1.257750 TGGCAGCGATGTAGTCTGGT 61.258 55.000 1.22 0.00 0.00 4.00
758 782 0.744874 GGCAGCGATGTAGTCTGGTA 59.255 55.000 1.22 0.00 0.00 3.25
768 792 5.064452 CGATGTAGTCTGGTAGTTTCTACGT 59.936 44.000 0.00 0.00 35.26 3.57
770 794 6.974932 TGTAGTCTGGTAGTTTCTACGTAG 57.025 41.667 16.73 16.73 35.26 3.51
778 802 4.034975 GGTAGTTTCTACGTAGTCGCTGAT 59.965 45.833 21.53 6.15 43.93 2.90
827 857 1.000274 ACGAATTTTGGCAGCTGGTTC 60.000 47.619 17.12 0.00 0.00 3.62
837 867 1.171308 CAGCTGGTTCATCTTGGGTG 58.829 55.000 5.57 0.00 0.00 4.61
838 868 0.038744 AGCTGGTTCATCTTGGGTGG 59.961 55.000 0.00 0.00 0.00 4.61
839 869 1.598701 GCTGGTTCATCTTGGGTGGC 61.599 60.000 0.00 0.00 0.00 5.01
957 988 3.617045 GCCTTCCATAGAGCTGCTAGATG 60.617 52.174 0.15 9.13 31.33 2.90
981 1015 5.402398 GGTTACCATTGATTTTGCTCTGAC 58.598 41.667 0.00 0.00 0.00 3.51
996 1030 3.309954 GCTCTGACCCTTTAATACTTGCG 59.690 47.826 0.00 0.00 0.00 4.85
1005 1039 4.569564 CCTTTAATACTTGCGGTACAGGTC 59.430 45.833 0.00 0.00 39.66 3.85
1035 1069 0.531753 GCGAGAAGGCCAAGGAGATC 60.532 60.000 5.01 0.00 0.00 2.75
1064 1098 4.125703 GAGGAGAGCAATGTTCAGGTATG 58.874 47.826 0.00 0.00 0.00 2.39
1068 1102 5.301835 AGAGCAATGTTCAGGTATGCTAT 57.698 39.130 0.00 0.00 46.58 2.97
1072 1106 7.123247 AGAGCAATGTTCAGGTATGCTATTTTT 59.877 33.333 0.00 0.00 46.58 1.94
1073 1107 8.292444 AGCAATGTTCAGGTATGCTATTTTTA 57.708 30.769 0.00 0.00 44.92 1.52
1080 1114 9.952188 GTTCAGGTATGCTATTTTTATTTCTCC 57.048 33.333 0.00 0.00 0.00 3.71
1081 1115 9.693739 TTCAGGTATGCTATTTTTATTTCTCCA 57.306 29.630 0.00 0.00 0.00 3.86
1082 1116 9.693739 TCAGGTATGCTATTTTTATTTCTCCAA 57.306 29.630 0.00 0.00 0.00 3.53
1093 1127 9.956720 ATTTTTATTTCTCCAAGATAAGATGCG 57.043 29.630 0.00 0.00 0.00 4.73
1094 1128 6.545504 TTATTTCTCCAAGATAAGATGCGC 57.454 37.500 0.00 0.00 0.00 6.09
1103 1137 4.423625 AGATAAGATGCGCCCTTTACTT 57.576 40.909 15.70 9.40 0.00 2.24
1106 1140 2.717639 AGATGCGCCCTTTACTTGAT 57.282 45.000 4.18 0.00 0.00 2.57
1114 1148 3.421844 GCCCTTTACTTGATTGGTCAGT 58.578 45.455 0.00 0.00 35.39 3.41
1115 1149 3.440522 GCCCTTTACTTGATTGGTCAGTC 59.559 47.826 0.00 0.00 35.39 3.51
1123 1157 4.597507 ACTTGATTGGTCAGTCCTTCCTTA 59.402 41.667 0.00 0.00 35.39 2.69
1201 1241 5.520376 CCATTTTGGTGTCAAGAGAAAGT 57.480 39.130 0.00 0.00 33.98 2.66
1209 1249 4.192317 GTGTCAAGAGAAAGTCACAAGGT 58.808 43.478 0.00 0.00 0.00 3.50
1213 1253 5.463724 GTCAAGAGAAAGTCACAAGGTACTG 59.536 44.000 0.00 0.00 40.86 2.74
1214 1254 5.362717 TCAAGAGAAAGTCACAAGGTACTGA 59.637 40.000 0.00 0.00 40.86 3.41
1217 1257 5.540337 AGAGAAAGTCACAAGGTACTGATCA 59.460 40.000 0.00 0.00 40.86 2.92
1223 1263 4.926238 GTCACAAGGTACTGATCAAGTGAG 59.074 45.833 0.00 0.00 40.86 3.51
1236 1276 4.890158 TCAAGTGAGCAAGACAAGGATA 57.110 40.909 0.00 0.00 0.00 2.59
1244 1284 8.486210 AGTGAGCAAGACAAGGATATGTTATAA 58.514 33.333 0.00 0.00 32.57 0.98
1245 1285 8.768955 GTGAGCAAGACAAGGATATGTTATAAG 58.231 37.037 0.00 0.00 32.57 1.73
1246 1286 8.486210 TGAGCAAGACAAGGATATGTTATAAGT 58.514 33.333 0.00 0.00 32.57 2.24
1247 1287 9.982651 GAGCAAGACAAGGATATGTTATAAGTA 57.017 33.333 0.00 0.00 32.57 2.24
1303 1366 4.698201 TGTGGTGGTTCTATCTGTTCAA 57.302 40.909 0.00 0.00 0.00 2.69
1306 1369 6.068010 TGTGGTGGTTCTATCTGTTCAAAAT 58.932 36.000 0.00 0.00 0.00 1.82
1374 1437 4.065423 ACGATACATTGTTCAACAAGCG 57.935 40.909 9.27 2.49 41.94 4.68
1387 1450 1.490621 ACAAGCGCAATTGTTTCTGC 58.509 45.000 11.47 4.23 40.47 4.26
1420 1483 1.069668 AGCCGTTACTCGTGGAGTTTT 59.930 47.619 3.32 0.00 40.28 2.43
1434 1497 7.247728 TCGTGGAGTTTTTATTGTTATCATGC 58.752 34.615 0.00 0.00 0.00 4.06
1516 1581 6.780522 ACCCAAAATAACTTGAGTATGTTGGT 59.219 34.615 10.90 0.00 0.00 3.67
1563 1628 7.425606 TCAAAGAAAGGAGTGCAAATAACTTC 58.574 34.615 0.00 0.00 0.00 3.01
1564 1629 5.613358 AGAAAGGAGTGCAAATAACTTCG 57.387 39.130 0.00 0.00 0.00 3.79
1579 1644 0.529337 CTTCGCGAGGAGATGTGCAT 60.529 55.000 13.72 0.00 39.93 3.96
1674 1741 2.741985 TGCCAAGCACGGTCATCG 60.742 61.111 0.00 0.00 45.88 3.84
1681 1748 3.300857 CAAGCACGGTCATCGATAGTAG 58.699 50.000 0.00 0.00 42.43 2.57
1713 1780 2.575532 TGGCAGTTTCAAGGTCAGAAG 58.424 47.619 0.00 0.00 0.00 2.85
1768 2223 7.389053 GGAAGATTGCTACTGGTATTTCCATAG 59.611 40.741 0.00 0.00 46.12 2.23
1769 2224 7.380423 AGATTGCTACTGGTATTTCCATAGT 57.620 36.000 0.00 0.00 46.12 2.12
1770 2225 8.492415 AGATTGCTACTGGTATTTCCATAGTA 57.508 34.615 0.00 0.00 46.12 1.82
1771 2226 8.589338 AGATTGCTACTGGTATTTCCATAGTAG 58.411 37.037 0.00 0.00 46.12 2.57
1772 2227 7.907841 TTGCTACTGGTATTTCCATAGTAGA 57.092 36.000 12.44 0.00 46.12 2.59
1773 2228 7.907841 TGCTACTGGTATTTCCATAGTAGAA 57.092 36.000 12.44 0.81 46.12 2.10
1774 2229 7.723324 TGCTACTGGTATTTCCATAGTAGAAC 58.277 38.462 12.44 0.00 46.12 3.01
1775 2230 7.563924 TGCTACTGGTATTTCCATAGTAGAACT 59.436 37.037 12.44 0.00 46.12 3.01
1776 2231 7.868415 GCTACTGGTATTTCCATAGTAGAACTG 59.132 40.741 12.44 0.00 46.12 3.16
1808 2263 9.737025 GTTCTAAATTTGTACTAAACACTAGCG 57.263 33.333 0.00 0.00 38.00 4.26
1864 2319 7.781548 ACTTTTACCCATTATAGTAAGCACG 57.218 36.000 0.00 0.00 30.57 5.34
1921 2376 4.228912 AGCAGAAATAACACACTGTTGC 57.771 40.909 0.00 0.00 41.30 4.17
1980 2435 4.976116 GGTAAAAGAACAACACTGCATGAC 59.024 41.667 0.00 0.00 0.00 3.06
1982 2437 0.588252 AGAACAACACTGCATGACGC 59.412 50.000 0.00 0.00 42.89 5.19
2005 2460 2.037772 TGTTCCTTGCTCCTGAAGTCTC 59.962 50.000 0.00 0.00 0.00 3.36
2031 2486 1.974957 TCTCGACAAAGGTGATGGGAA 59.025 47.619 0.00 0.00 0.00 3.97
2088 2561 3.181478 TGAACAACACAAGCAATGCATGA 60.181 39.130 17.69 0.00 31.38 3.07
2123 2596 4.286032 TGTACCATGCTTTCAGTCCTACTT 59.714 41.667 0.00 0.00 0.00 2.24
2141 2614 8.613482 GTCCTACTTTATTGATTAGTGAAAGGC 58.387 37.037 0.00 0.00 32.56 4.35
2162 2635 5.192327 GCTGAACTAATAAATGCAGCCAT 57.808 39.130 0.00 0.00 41.99 4.40
2164 2637 6.145535 GCTGAACTAATAAATGCAGCCATAC 58.854 40.000 0.00 0.00 41.99 2.39
2165 2638 6.238731 GCTGAACTAATAAATGCAGCCATACA 60.239 38.462 0.00 0.00 41.99 2.29
2166 2639 7.026631 TGAACTAATAAATGCAGCCATACAC 57.973 36.000 0.00 0.00 0.00 2.90
2171 2644 2.512692 AATGCAGCCATACACCTTGA 57.487 45.000 0.00 0.00 0.00 3.02
2331 2804 3.364441 TGGCAACTGGCATGCGTC 61.364 61.111 12.44 0.00 46.12 5.19
2376 2850 0.105039 CTTAAGCTAGCCCCACGGAG 59.895 60.000 12.13 0.00 0.00 4.63
2404 2878 3.441572 GGAACTTGTGCTATGCAATGACT 59.558 43.478 0.00 0.00 41.47 3.41
2405 2879 4.409570 GAACTTGTGCTATGCAATGACTG 58.590 43.478 0.00 0.00 41.47 3.51
2625 3099 2.100584 TGTTCATGTTCCTTTGTGCCAC 59.899 45.455 0.00 0.00 0.00 5.01
2671 3154 7.611855 TGAAGTCTGATCTTCACTATACTGACA 59.388 37.037 14.48 0.00 45.62 3.58
2750 3233 5.593095 TGTAGATCGTGGCTACTATTCTGTT 59.407 40.000 0.00 0.00 39.13 3.16
2951 3434 4.527509 AGCCGACAGGTAGATTATCATG 57.472 45.455 0.00 0.00 40.50 3.07
2979 3462 7.660208 TCCTACGAAGCTTCTAATGTTCTTTTT 59.340 33.333 23.50 0.00 0.00 1.94
3218 3711 7.524294 CAACATTAATTGCAGGTATGGAAAC 57.476 36.000 0.00 0.00 40.42 2.78
3385 3880 5.088739 GCAAACATTTCATAGGTTGAGTCG 58.911 41.667 0.00 0.00 35.27 4.18
3460 3955 1.407434 TACGTAACTTTGACCGCACG 58.593 50.000 0.00 0.00 35.62 5.34
3608 4103 8.482429 CAGAAAATTCTTGTTTGCTCAATGTAC 58.518 33.333 0.00 0.00 34.74 2.90
3792 4288 5.106317 TGAGTTCCACACTTGTTTTTGTCTC 60.106 40.000 0.00 0.00 35.01 3.36
3794 4290 5.123979 AGTTCCACACTTGTTTTTGTCTCTC 59.876 40.000 0.00 0.00 27.32 3.20
3922 4418 7.713734 ATCAATCTTGGAAGTTGATGATTGT 57.286 32.000 0.00 0.00 40.13 2.71
3954 4450 8.936864 GCATACTTTCATCCAGGTACATTATAC 58.063 37.037 0.00 0.00 0.00 1.47
4100 4631 6.779539 ACACTGATACATGGATGAGTAGATGA 59.220 38.462 9.94 0.00 0.00 2.92
4103 4634 8.708378 ACTGATACATGGATGAGTAGATGAAAA 58.292 33.333 8.45 0.00 0.00 2.29
4104 4635 9.551734 CTGATACATGGATGAGTAGATGAAAAA 57.448 33.333 0.00 0.00 0.00 1.94
4206 4737 7.448161 TGATATAACAGTATGGCCAATTTGAGG 59.552 37.037 10.96 0.00 43.62 3.86
4208 4739 3.356290 ACAGTATGGCCAATTTGAGGAC 58.644 45.455 10.96 0.00 43.62 3.85
4267 4798 6.367149 GCTTTTCTCCTTTCACAAATTGGATC 59.633 38.462 0.00 0.00 0.00 3.36
4408 4948 1.665169 TGATGATGCGAAATCGGTGTG 59.335 47.619 4.84 0.00 40.23 3.82
4448 4988 6.211584 AGGTCTGATAACTAGCTGAAGTTTCA 59.788 38.462 7.18 9.50 40.20 2.69
4583 5124 7.012704 TCGTGATCAAAGTGTATACCTACCTAC 59.987 40.741 0.00 0.00 0.00 3.18
4584 5125 7.432059 GTGATCAAAGTGTATACCTACCTACC 58.568 42.308 0.00 0.00 0.00 3.18
4585 5126 7.287235 GTGATCAAAGTGTATACCTACCTACCT 59.713 40.741 0.00 0.00 0.00 3.08
4586 5127 8.505246 TGATCAAAGTGTATACCTACCTACCTA 58.495 37.037 0.00 0.00 0.00 3.08
4587 5128 8.703378 ATCAAAGTGTATACCTACCTACCTAC 57.297 38.462 0.00 0.00 0.00 3.18
4588 5129 7.062957 TCAAAGTGTATACCTACCTACCTACC 58.937 42.308 0.00 0.00 0.00 3.18
4589 5130 6.855375 AAGTGTATACCTACCTACCTACCT 57.145 41.667 0.00 0.00 0.00 3.08
4590 5131 7.954539 AAGTGTATACCTACCTACCTACCTA 57.045 40.000 0.00 0.00 0.00 3.08
4591 5132 7.323052 AGTGTATACCTACCTACCTACCTAC 57.677 44.000 0.00 0.00 0.00 3.18
4592 5133 6.273495 AGTGTATACCTACCTACCTACCTACC 59.727 46.154 0.00 0.00 0.00 3.18
4593 5134 6.273495 GTGTATACCTACCTACCTACCTACCT 59.727 46.154 0.00 0.00 0.00 3.08
4594 5135 7.458170 GTGTATACCTACCTACCTACCTACCTA 59.542 44.444 0.00 0.00 0.00 3.08
4610 5151 1.361543 ACCTACCTACAGCTGGAAGGA 59.638 52.381 32.62 19.76 34.34 3.36
5097 5638 0.464735 GTGTGGTGTTGGCTGTGGTA 60.465 55.000 0.00 0.00 0.00 3.25
5098 5639 0.476338 TGTGGTGTTGGCTGTGGTAT 59.524 50.000 0.00 0.00 0.00 2.73
5099 5640 0.881118 GTGGTGTTGGCTGTGGTATG 59.119 55.000 0.00 0.00 0.00 2.39
5100 5641 0.767998 TGGTGTTGGCTGTGGTATGA 59.232 50.000 0.00 0.00 0.00 2.15
5101 5642 1.143889 TGGTGTTGGCTGTGGTATGAA 59.856 47.619 0.00 0.00 0.00 2.57
5102 5643 2.235016 GGTGTTGGCTGTGGTATGAAA 58.765 47.619 0.00 0.00 0.00 2.69
5103 5644 2.825532 GGTGTTGGCTGTGGTATGAAAT 59.174 45.455 0.00 0.00 0.00 2.17
5104 5645 4.013728 GGTGTTGGCTGTGGTATGAAATA 58.986 43.478 0.00 0.00 0.00 1.40
5105 5646 4.644685 GGTGTTGGCTGTGGTATGAAATAT 59.355 41.667 0.00 0.00 0.00 1.28
5106 5647 5.450412 GGTGTTGGCTGTGGTATGAAATATG 60.450 44.000 0.00 0.00 0.00 1.78
5107 5648 5.356751 GTGTTGGCTGTGGTATGAAATATGA 59.643 40.000 0.00 0.00 0.00 2.15
5108 5649 5.948758 TGTTGGCTGTGGTATGAAATATGAA 59.051 36.000 0.00 0.00 0.00 2.57
5109 5650 6.606796 TGTTGGCTGTGGTATGAAATATGAAT 59.393 34.615 0.00 0.00 0.00 2.57
5110 5651 7.123997 TGTTGGCTGTGGTATGAAATATGAATT 59.876 33.333 0.00 0.00 0.00 2.17
5170 5711 0.609662 ATGGTGCAAAAGATGTGGGC 59.390 50.000 0.00 0.00 0.00 5.36
5171 5712 0.758310 TGGTGCAAAAGATGTGGGCA 60.758 50.000 0.00 0.00 0.00 5.36
5173 5714 1.673626 GGTGCAAAAGATGTGGGCATG 60.674 52.381 0.00 0.00 36.79 4.06
5188 5729 2.686915 GGGCATGATCCACAAAGAAGAG 59.313 50.000 0.00 0.00 0.00 2.85
5191 5732 3.192001 GCATGATCCACAAAGAAGAGCAA 59.808 43.478 0.00 0.00 28.54 3.91
5195 5736 4.828939 TGATCCACAAAGAAGAGCAAACAT 59.171 37.500 0.00 0.00 0.00 2.71
5196 5737 5.302568 TGATCCACAAAGAAGAGCAAACATT 59.697 36.000 0.00 0.00 0.00 2.71
5197 5738 6.489700 TGATCCACAAAGAAGAGCAAACATTA 59.510 34.615 0.00 0.00 0.00 1.90
5198 5739 6.899393 TCCACAAAGAAGAGCAAACATTAT 57.101 33.333 0.00 0.00 0.00 1.28
5199 5740 7.288810 TCCACAAAGAAGAGCAAACATTATT 57.711 32.000 0.00 0.00 0.00 1.40
5200 5741 8.402798 TCCACAAAGAAGAGCAAACATTATTA 57.597 30.769 0.00 0.00 0.00 0.98
5201 5742 9.023962 TCCACAAAGAAGAGCAAACATTATTAT 57.976 29.630 0.00 0.00 0.00 1.28
5202 5743 9.643693 CCACAAAGAAGAGCAAACATTATTATT 57.356 29.630 0.00 0.00 0.00 1.40
5228 5769 9.734620 TCTTATTATGCTTCCAAATGATTTTCG 57.265 29.630 0.00 0.00 0.00 3.46
5231 5772 4.255833 TGCTTCCAAATGATTTTCGCTT 57.744 36.364 0.00 0.00 0.00 4.68
5249 5790 3.181520 CGCTTCCGACCAGTATTTTCTTG 60.182 47.826 0.00 0.00 36.29 3.02
5252 5793 3.934068 TCCGACCAGTATTTTCTTGGAC 58.066 45.455 0.00 0.00 0.00 4.02
5269 5810 5.591472 TCTTGGACTGAGCATATTTTCCATG 59.409 40.000 0.00 0.00 33.20 3.66
5325 5866 8.858186 CATTGTGTTTTAATCGCATGTGAATTA 58.142 29.630 13.91 9.53 0.00 1.40
5348 5889 5.410355 AAAAATACCATTGCTCTGCATGT 57.590 34.783 0.00 0.00 38.76 3.21
5351 5892 6.528537 AAATACCATTGCTCTGCATGTTTA 57.471 33.333 0.00 0.00 38.76 2.01
5352 5893 5.762825 ATACCATTGCTCTGCATGTTTAG 57.237 39.130 0.00 0.00 38.76 1.85
5353 5894 2.756760 ACCATTGCTCTGCATGTTTAGG 59.243 45.455 0.00 0.00 38.76 2.69
5354 5895 2.480759 CCATTGCTCTGCATGTTTAGGC 60.481 50.000 0.00 0.00 38.76 3.93
5371 5916 1.944709 AGGCAAACGTGTACTGTTTCC 59.055 47.619 12.07 14.38 37.44 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
439 440 1.979693 GAGACACGCAGGAGGGAGT 60.980 63.158 0.00 0.00 34.41 3.85
447 448 0.320247 AAAGGCAGAGAGACACGCAG 60.320 55.000 0.00 0.00 0.00 5.18
448 449 0.319900 GAAAGGCAGAGAGACACGCA 60.320 55.000 0.00 0.00 0.00 5.24
449 450 0.037790 AGAAAGGCAGAGAGACACGC 60.038 55.000 0.00 0.00 0.00 5.34
450 451 1.543802 AGAGAAAGGCAGAGAGACACG 59.456 52.381 0.00 0.00 0.00 4.49
452 453 1.815613 CGAGAGAAAGGCAGAGAGACA 59.184 52.381 0.00 0.00 0.00 3.41
453 454 1.816224 ACGAGAGAAAGGCAGAGAGAC 59.184 52.381 0.00 0.00 0.00 3.36
454 455 1.815613 CACGAGAGAAAGGCAGAGAGA 59.184 52.381 0.00 0.00 0.00 3.10
455 456 1.735369 GCACGAGAGAAAGGCAGAGAG 60.735 57.143 0.00 0.00 0.00 3.20
457 458 0.739112 GGCACGAGAGAAAGGCAGAG 60.739 60.000 0.00 0.00 0.00 3.35
736 742 1.675714 CCAGACTACATCGCTGCCAAA 60.676 52.381 0.00 0.00 0.00 3.28
737 743 0.108186 CCAGACTACATCGCTGCCAA 60.108 55.000 0.00 0.00 0.00 4.52
739 745 0.744874 TACCAGACTACATCGCTGCC 59.255 55.000 0.00 0.00 0.00 4.85
754 778 3.125829 CAGCGACTACGTAGAAACTACCA 59.874 47.826 28.74 0.00 41.98 3.25
755 779 3.372206 TCAGCGACTACGTAGAAACTACC 59.628 47.826 28.74 9.24 41.98 3.18
756 780 4.590400 TCAGCGACTACGTAGAAACTAC 57.410 45.455 28.74 11.22 41.98 2.73
757 781 5.808042 AATCAGCGACTACGTAGAAACTA 57.192 39.130 28.74 9.71 41.98 2.24
758 782 4.698583 AATCAGCGACTACGTAGAAACT 57.301 40.909 28.74 17.67 41.98 2.66
768 792 1.468520 GCTGCCAAAAATCAGCGACTA 59.531 47.619 0.00 0.00 44.94 2.59
770 794 2.729378 GCTGCCAAAAATCAGCGAC 58.271 52.632 0.00 0.00 44.94 5.19
778 802 2.209315 GGGGAGCAGCTGCCAAAAA 61.209 57.895 34.39 0.00 44.05 1.94
827 857 2.608970 CTACCCCGCCACCCAAGATG 62.609 65.000 0.00 0.00 0.00 2.90
837 867 2.122989 TCCTCCATCTACCCCGCC 60.123 66.667 0.00 0.00 0.00 6.13
838 868 1.457831 ACTCCTCCATCTACCCCGC 60.458 63.158 0.00 0.00 0.00 6.13
839 869 0.106167 TGACTCCTCCATCTACCCCG 60.106 60.000 0.00 0.00 0.00 5.73
957 988 4.462483 TCAGAGCAAAATCAATGGTAACCC 59.538 41.667 0.00 0.00 0.00 4.11
981 1015 3.875134 CCTGTACCGCAAGTATTAAAGGG 59.125 47.826 0.00 0.00 32.28 3.95
996 1030 0.969894 ACAGTGCTCTGACCTGTACC 59.030 55.000 21.96 0.00 43.76 3.34
1005 1039 1.013005 CCTTCTCGCACAGTGCTCTG 61.013 60.000 23.15 14.08 42.25 3.35
1035 1069 3.278668 ACATTGCTCTCCTCCATCAAG 57.721 47.619 0.00 0.00 0.00 3.02
1068 1102 7.915397 GCGCATCTTATCTTGGAGAAATAAAAA 59.085 33.333 0.30 0.00 0.00 1.94
1072 1106 4.997395 GGCGCATCTTATCTTGGAGAAATA 59.003 41.667 10.83 0.00 0.00 1.40
1073 1107 3.817647 GGCGCATCTTATCTTGGAGAAAT 59.182 43.478 10.83 0.00 0.00 2.17
1076 1110 1.070758 GGGCGCATCTTATCTTGGAGA 59.929 52.381 10.83 0.00 0.00 3.71
1077 1111 1.071385 AGGGCGCATCTTATCTTGGAG 59.929 52.381 10.83 0.00 0.00 3.86
1078 1112 1.131638 AGGGCGCATCTTATCTTGGA 58.868 50.000 10.83 0.00 0.00 3.53
1079 1113 1.972872 AAGGGCGCATCTTATCTTGG 58.027 50.000 10.83 0.00 0.00 3.61
1080 1114 4.130118 AGTAAAGGGCGCATCTTATCTTG 58.870 43.478 10.83 0.00 0.00 3.02
1081 1115 4.423625 AGTAAAGGGCGCATCTTATCTT 57.576 40.909 10.83 0.00 0.00 2.40
1082 1116 4.130118 CAAGTAAAGGGCGCATCTTATCT 58.870 43.478 10.83 10.89 0.00 1.98
1085 1119 3.620427 TCAAGTAAAGGGCGCATCTTA 57.380 42.857 10.83 0.00 0.00 2.10
1087 1121 2.684881 CAATCAAGTAAAGGGCGCATCT 59.315 45.455 10.83 2.58 0.00 2.90
1089 1123 1.750778 CCAATCAAGTAAAGGGCGCAT 59.249 47.619 10.83 0.00 0.00 4.73
1090 1124 1.173043 CCAATCAAGTAAAGGGCGCA 58.827 50.000 10.83 0.00 0.00 6.09
1091 1125 1.132453 GACCAATCAAGTAAAGGGCGC 59.868 52.381 0.00 0.00 0.00 6.53
1092 1126 2.420022 CTGACCAATCAAGTAAAGGGCG 59.580 50.000 0.00 0.00 33.30 6.13
1093 1127 3.421844 ACTGACCAATCAAGTAAAGGGC 58.578 45.455 0.00 0.00 33.30 5.19
1094 1128 4.010349 GGACTGACCAATCAAGTAAAGGG 58.990 47.826 0.00 0.00 38.79 3.95
1103 1137 3.263425 GGTAAGGAAGGACTGACCAATCA 59.737 47.826 0.00 0.00 42.04 2.57
1106 1140 2.696775 TGGTAAGGAAGGACTGACCAA 58.303 47.619 0.00 0.00 42.04 3.67
1114 1148 2.700897 GCTAGCTCATGGTAAGGAAGGA 59.299 50.000 7.70 0.00 0.00 3.36
1115 1149 2.435805 TGCTAGCTCATGGTAAGGAAGG 59.564 50.000 17.23 0.00 0.00 3.46
1123 1157 2.238144 ACAAGATGTGCTAGCTCATGGT 59.762 45.455 31.14 22.83 31.36 3.55
1189 1229 5.463724 CAGTACCTTGTGACTTTCTCTTGAC 59.536 44.000 0.00 0.00 0.00 3.18
1191 1231 5.601662 TCAGTACCTTGTGACTTTCTCTTG 58.398 41.667 0.00 0.00 0.00 3.02
1192 1232 5.871396 TCAGTACCTTGTGACTTTCTCTT 57.129 39.130 0.00 0.00 0.00 2.85
1201 1241 4.561530 GCTCACTTGATCAGTACCTTGTGA 60.562 45.833 0.00 3.32 32.76 3.58
1209 1249 4.871933 TGTCTTGCTCACTTGATCAGTA 57.128 40.909 0.00 0.00 32.76 2.74
1213 1253 3.668447 TCCTTGTCTTGCTCACTTGATC 58.332 45.455 0.00 0.00 0.00 2.92
1214 1254 3.777106 TCCTTGTCTTGCTCACTTGAT 57.223 42.857 0.00 0.00 0.00 2.57
1217 1257 5.171339 ACATATCCTTGTCTTGCTCACTT 57.829 39.130 0.00 0.00 0.00 3.16
1236 1276 9.886132 CCTTACACCAGAAGTTACTTATAACAT 57.114 33.333 0.00 0.00 42.83 2.71
1244 1284 7.174426 GCATAAAACCTTACACCAGAAGTTACT 59.826 37.037 0.00 0.00 0.00 2.24
1245 1285 7.040961 TGCATAAAACCTTACACCAGAAGTTAC 60.041 37.037 0.00 0.00 0.00 2.50
1246 1286 6.999272 TGCATAAAACCTTACACCAGAAGTTA 59.001 34.615 0.00 0.00 0.00 2.24
1247 1287 5.830991 TGCATAAAACCTTACACCAGAAGTT 59.169 36.000 0.00 0.00 0.00 2.66
1303 1366 9.838339 CTGTTACCTCAGGATACATCTTAATTT 57.162 33.333 0.00 0.00 41.41 1.82
1306 1369 8.475639 GTTCTGTTACCTCAGGATACATCTTAA 58.524 37.037 0.00 0.00 41.41 1.85
1374 1437 3.562505 CACTCTCAGCAGAAACAATTGC 58.437 45.455 5.05 0.00 40.57 3.56
1387 1450 0.814457 AACGGCTCTAGCACTCTCAG 59.186 55.000 4.07 0.00 44.36 3.35
1434 1497 7.783090 AGTGTAGTGATATGAGCAAAAGATG 57.217 36.000 0.00 0.00 0.00 2.90
1493 1558 7.881142 TGACCAACATACTCAAGTTATTTTGG 58.119 34.615 5.96 5.96 0.00 3.28
1516 1581 7.179927 TGATTTTGTTTACTCGTCGATTTGA 57.820 32.000 0.00 0.00 0.00 2.69
1563 1628 0.249031 TGTATGCACATCTCCTCGCG 60.249 55.000 0.00 0.00 0.00 5.87
1564 1629 2.160822 ATGTATGCACATCTCCTCGC 57.839 50.000 0.00 0.00 41.75 5.03
1608 1673 7.526041 ACCCAGTTCAATATTGGAGCATATTA 58.474 34.615 15.36 0.00 33.76 0.98
1674 1741 7.036220 ACTGCCAATATATTGCGACTACTATC 58.964 38.462 18.40 0.49 36.48 2.08
1681 1748 5.168526 TGAAACTGCCAATATATTGCGAC 57.831 39.130 18.40 10.99 36.48 5.19
1713 1780 5.308014 TGTCACAATATCATCATACCAGGC 58.692 41.667 0.00 0.00 0.00 4.85
1800 2255 6.945938 ACTAGATCTATTGTTCGCTAGTGT 57.054 37.500 2.11 0.00 37.67 3.55
1841 2296 8.603242 ATCGTGCTTACTATAATGGGTAAAAG 57.397 34.615 0.00 0.00 0.00 2.27
1921 2376 6.019237 GGAAGTATAGATATGCATGCACATCG 60.019 42.308 28.24 0.00 35.24 3.84
1980 2435 2.037136 CAGGAGCAAGGAACAGGCG 61.037 63.158 0.00 0.00 34.87 5.52
1982 2437 1.072965 ACTTCAGGAGCAAGGAACAGG 59.927 52.381 0.00 0.00 0.00 4.00
2005 2460 2.416747 TCACCTTTGTCGAGAATGCAG 58.583 47.619 0.00 0.00 0.00 4.41
2031 2486 5.357742 AGTTTTTCTTTGGAAGGCATGTT 57.642 34.783 0.00 0.00 32.61 2.71
2123 2596 9.733556 TTAGTTCAGCCTTTCACTAATCAATAA 57.266 29.630 0.00 0.00 28.80 1.40
2141 2614 7.134815 GTGTATGGCTGCATTTATTAGTTCAG 58.865 38.462 0.50 0.00 0.00 3.02
2162 2635 7.126573 TCCAACTACCATTATCATCAAGGTGTA 59.873 37.037 0.00 0.00 33.91 2.90
2164 2637 6.260936 GTCCAACTACCATTATCATCAAGGTG 59.739 42.308 0.00 0.00 33.91 4.00
2165 2638 6.069673 TGTCCAACTACCATTATCATCAAGGT 60.070 38.462 0.00 0.00 36.40 3.50
2166 2639 6.356556 TGTCCAACTACCATTATCATCAAGG 58.643 40.000 0.00 0.00 0.00 3.61
2171 2644 7.379059 TGAGATGTCCAACTACCATTATCAT 57.621 36.000 0.00 0.00 0.00 2.45
2376 2850 3.689161 TGCATAGCACAAGTTCCACATAC 59.311 43.478 0.00 0.00 31.71 2.39
2404 2878 6.656270 CAGGAGGCACATAATTATATGAAGCA 59.344 38.462 7.93 0.00 41.25 3.91
2405 2879 6.656693 ACAGGAGGCACATAATTATATGAAGC 59.343 38.462 7.93 5.22 41.25 3.86
2625 3099 8.006298 ACTTCACTATAGATGACTCAAGAAGG 57.994 38.462 6.78 0.00 0.00 3.46
2671 3154 6.591834 CGGACACTGATAAAAACAGAGAAGAT 59.408 38.462 0.00 0.00 38.55 2.40
2750 3233 4.395959 AACTCTTACCGTGACAGTTTCA 57.604 40.909 0.00 0.00 0.00 2.69
2827 3310 8.414778 GGTTACATTAGTCACAAGAGCTACTAT 58.585 37.037 0.00 0.00 0.00 2.12
2951 3434 4.048241 ACATTAGAAGCTTCGTAGGAGC 57.952 45.455 20.43 0.00 0.00 4.70
3218 3711 0.738389 AGGTTTTCCACACAGTTGCG 59.262 50.000 0.00 0.00 43.73 4.85
3385 3880 3.367630 CACCGTGCAAGCAAAATATTTCC 59.632 43.478 0.10 0.00 0.00 3.13
3608 4103 8.352942 GGAAAACTGACCTAAATATTGGCATAG 58.647 37.037 0.00 0.00 0.00 2.23
3829 4325 4.097286 GTGACCACTTTTTGCTCCTGTTTA 59.903 41.667 0.00 0.00 0.00 2.01
3922 4418 2.103094 CTGGATGAAAGTATGCTCCCGA 59.897 50.000 0.00 0.00 0.00 5.14
3954 4450 7.966753 CCAGAACAAATGTAGAAATGAGATGTG 59.033 37.037 0.00 0.00 0.00 3.21
4031 4562 7.959175 ACCACTTCAGTTACTTATGTCACTTA 58.041 34.615 0.00 0.00 29.05 2.24
4100 4631 9.387257 GGAAAATAATCTGCCAATCTCATTTTT 57.613 29.630 0.00 0.00 0.00 1.94
4103 4634 7.343833 ACTGGAAAATAATCTGCCAATCTCATT 59.656 33.333 0.00 0.00 0.00 2.57
4104 4635 6.837568 ACTGGAAAATAATCTGCCAATCTCAT 59.162 34.615 0.00 0.00 0.00 2.90
4146 4677 1.473434 GCCAACAGGTCCTCCTATTCG 60.473 57.143 0.00 0.00 43.07 3.34
4206 4737 5.431179 TTTGGTTAGACTTCCTATGGGTC 57.569 43.478 0.00 0.00 0.00 4.46
4208 4739 6.187682 ACATTTTGGTTAGACTTCCTATGGG 58.812 40.000 0.00 0.00 0.00 4.00
4267 4798 5.757886 TGAAAATCCTAGACGTGCAAAAAG 58.242 37.500 0.00 0.00 0.00 2.27
4408 4948 1.456287 ACCTTTGGTGCAGAGGTCC 59.544 57.895 5.43 0.00 44.13 4.46
4448 4988 5.105064 AGCAAAAAGATTTATCTGCAGCCAT 60.105 36.000 9.47 0.23 37.19 4.40
4583 5124 3.488363 CAGCTGTAGGTAGGTAGGTAGG 58.512 54.545 5.25 0.00 0.00 3.18
4584 5125 3.137913 TCCAGCTGTAGGTAGGTAGGTAG 59.862 52.174 13.81 0.00 0.00 3.18
4585 5126 3.125656 TCCAGCTGTAGGTAGGTAGGTA 58.874 50.000 13.81 0.00 0.00 3.08
4586 5127 1.928077 TCCAGCTGTAGGTAGGTAGGT 59.072 52.381 13.81 0.00 0.00 3.08
4587 5128 2.750141 TCCAGCTGTAGGTAGGTAGG 57.250 55.000 13.81 0.00 0.00 3.18
4588 5129 2.959707 CCTTCCAGCTGTAGGTAGGTAG 59.040 54.545 19.21 4.32 38.50 3.18
4589 5130 2.584031 TCCTTCCAGCTGTAGGTAGGTA 59.416 50.000 23.90 8.51 42.50 3.08
4590 5131 1.361543 TCCTTCCAGCTGTAGGTAGGT 59.638 52.381 23.90 0.00 42.50 3.08
4591 5132 2.160721 TCCTTCCAGCTGTAGGTAGG 57.839 55.000 23.90 16.57 43.07 3.18
4592 5133 2.630580 GGATCCTTCCAGCTGTAGGTAG 59.369 54.545 23.90 9.40 42.12 3.18
4593 5134 2.679082 GGATCCTTCCAGCTGTAGGTA 58.321 52.381 23.90 14.99 42.12 3.08
4594 5135 1.501582 GGATCCTTCCAGCTGTAGGT 58.498 55.000 23.90 15.20 42.12 3.08
5009 5550 1.546998 GGGTTCACAACACCTAAGGGG 60.547 57.143 0.00 0.00 41.89 4.79
5056 5597 1.734465 GACAGTGCTCAACATGCTACC 59.266 52.381 0.00 0.00 0.00 3.18
5105 5646 9.295825 ACTAACCAGACAAACATTCATAATTCA 57.704 29.630 0.00 0.00 0.00 2.57
5106 5647 9.559958 CACTAACCAGACAAACATTCATAATTC 57.440 33.333 0.00 0.00 0.00 2.17
5107 5648 8.522830 CCACTAACCAGACAAACATTCATAATT 58.477 33.333 0.00 0.00 0.00 1.40
5108 5649 7.888021 TCCACTAACCAGACAAACATTCATAAT 59.112 33.333 0.00 0.00 0.00 1.28
5109 5650 7.227873 TCCACTAACCAGACAAACATTCATAA 58.772 34.615 0.00 0.00 0.00 1.90
5110 5651 6.774673 TCCACTAACCAGACAAACATTCATA 58.225 36.000 0.00 0.00 0.00 2.15
5154 5695 1.273048 TCATGCCCACATCTTTTGCAC 59.727 47.619 0.00 0.00 32.87 4.57
5158 5699 3.104519 TGGATCATGCCCACATCTTTT 57.895 42.857 2.97 0.00 32.87 2.27
5170 5711 5.159209 GTTTGCTCTTCTTTGTGGATCATG 58.841 41.667 0.00 0.00 0.00 3.07
5171 5712 4.828939 TGTTTGCTCTTCTTTGTGGATCAT 59.171 37.500 0.00 0.00 0.00 2.45
5173 5714 4.836125 TGTTTGCTCTTCTTTGTGGATC 57.164 40.909 0.00 0.00 0.00 3.36
5202 5743 9.734620 CGAAAATCATTTGGAAGCATAATAAGA 57.265 29.630 0.00 0.00 0.00 2.10
5203 5744 8.482429 GCGAAAATCATTTGGAAGCATAATAAG 58.518 33.333 0.00 0.00 0.00 1.73
5215 5756 3.171277 GTCGGAAGCGAAAATCATTTGG 58.829 45.455 0.00 0.00 0.00 3.28
5228 5769 3.127030 CCAAGAAAATACTGGTCGGAAGC 59.873 47.826 0.00 0.00 0.00 3.86
5231 5772 3.581332 AGTCCAAGAAAATACTGGTCGGA 59.419 43.478 0.00 0.00 0.00 4.55
5249 5790 4.234530 GCATGGAAAATATGCTCAGTCC 57.765 45.455 0.00 0.00 45.64 3.85
5269 5810 5.419542 TCCTATATTGATCAATGCCGTAGC 58.580 41.667 27.59 0.00 40.48 3.58
5337 5878 1.908344 TTGCCTAAACATGCAGAGCA 58.092 45.000 0.00 0.00 44.86 4.26
5338 5879 2.599659 GTTTGCCTAAACATGCAGAGC 58.400 47.619 0.00 0.00 44.38 4.09
5348 5889 4.035441 GGAAACAGTACACGTTTGCCTAAA 59.965 41.667 15.66 0.00 38.36 1.85
5351 5892 1.944709 GGAAACAGTACACGTTTGCCT 59.055 47.619 15.66 0.00 38.36 4.75
5352 5893 1.333435 CGGAAACAGTACACGTTTGCC 60.333 52.381 19.56 16.21 40.40 4.52
5353 5894 1.593933 TCGGAAACAGTACACGTTTGC 59.406 47.619 15.66 16.44 40.19 3.68
5354 5895 2.348218 GCTCGGAAACAGTACACGTTTG 60.348 50.000 15.66 5.44 36.72 2.93
5371 5916 1.057822 CGCTGACGAACATTGCTCG 59.942 57.895 7.86 7.86 43.93 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.