Multiple sequence alignment - TraesCS5A01G454900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G454900 chr5A 100.000 3801 0 0 1 3801 635597000 635593200 0.000000e+00 7020.0
1 TraesCS5A01G454900 chr5A 80.541 776 111 27 2298 3066 635552294 635551552 9.220000e-156 560.0
2 TraesCS5A01G454900 chr5A 79.907 642 88 25 1640 2255 635553058 635552432 2.100000e-117 433.0
3 TraesCS5A01G454900 chr5A 79.562 548 71 26 1115 1635 635553636 635553103 1.680000e-93 353.0
4 TraesCS5A01G454900 chr5B 89.526 3017 216 41 830 3801 639092325 639095286 0.000000e+00 3729.0
5 TraesCS5A01G454900 chr5B 80.658 1215 172 42 1815 3018 639135958 639137120 0.000000e+00 883.0
6 TraesCS5A01G454900 chr5B 79.049 568 71 29 1115 1647 639135179 639135733 2.810000e-91 346.0
7 TraesCS5A01G454900 chr5D 91.892 1998 98 26 830 2810 507921082 507919132 0.000000e+00 2734.0
8 TraesCS5A01G454900 chr5D 89.978 1826 117 31 889 2684 368572893 368574682 0.000000e+00 2298.0
9 TraesCS5A01G454900 chr5D 94.139 1109 44 9 2672 3769 368575711 368576809 0.000000e+00 1668.0
10 TraesCS5A01G454900 chr5D 78.261 1150 177 44 2304 3431 507915444 507914346 0.000000e+00 671.0
11 TraesCS5A01G454900 chr5D 93.966 348 20 1 3454 3801 507918297 507917951 3.360000e-145 525.0
12 TraesCS5A01G454900 chr5D 90.765 379 26 2 455 833 507921564 507921195 7.330000e-137 497.0
13 TraesCS5A01G454900 chr5D 83.541 401 46 11 2798 3194 507919116 507918732 1.300000e-94 357.0
14 TraesCS5A01G454900 chr5D 81.092 476 57 16 1163 1622 507916718 507916260 2.170000e-92 350.0
15 TraesCS5A01G454900 chr5D 85.714 105 5 2 3191 3295 507918469 507918375 6.720000e-18 102.0
16 TraesCS5A01G454900 chr1A 94.262 366 19 1 85 448 419036046 419036411 3.320000e-155 558.0
17 TraesCS5A01G454900 chr1A 91.736 363 28 1 88 448 529324532 529324170 1.580000e-138 503.0
18 TraesCS5A01G454900 chr1A 91.185 363 30 1 88 448 592558134 592558496 3.410000e-135 492.0
19 TraesCS5A01G454900 chr7A 94.460 361 20 0 88 448 704291786 704292146 1.190000e-154 556.0
20 TraesCS5A01G454900 chr7A 92.244 361 24 3 88 448 637871379 637871023 3.390000e-140 508.0
21 TraesCS5A01G454900 chr7A 86.058 208 28 1 555 761 20733650 20733857 4.940000e-54 222.0
22 TraesCS5A01G454900 chr6A 92.798 361 24 1 88 448 607060289 607060647 4.350000e-144 521.0
23 TraesCS5A01G454900 chr6A 85.404 322 43 4 442 762 606355305 606354987 7.870000e-87 331.0
24 TraesCS5A01G454900 chr2A 91.967 361 29 0 88 448 726416830 726417190 1.220000e-139 507.0
25 TraesCS5A01G454900 chr2A 91.460 363 29 1 88 448 745300161 745300523 7.330000e-137 497.0
26 TraesCS5A01G454900 chr3A 91.460 363 29 1 88 448 24487663 24487301 7.330000e-137 497.0
27 TraesCS5A01G454900 chr3B 90.541 222 19 2 3505 3726 170825568 170825787 3.710000e-75 292.0
28 TraesCS5A01G454900 chr2B 82.263 327 49 9 435 758 788997562 788997882 1.350000e-69 274.0
29 TraesCS5A01G454900 chr7D 94.737 38 2 0 523 560 612944440 612944477 4.100000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G454900 chr5A 635593200 635597000 3800 True 7020.000000 7020 100.000000 1 3801 1 chr5A.!!$R1 3800
1 TraesCS5A01G454900 chr5A 635551552 635553636 2084 True 448.666667 560 80.003333 1115 3066 3 chr5A.!!$R2 1951
2 TraesCS5A01G454900 chr5B 639092325 639095286 2961 False 3729.000000 3729 89.526000 830 3801 1 chr5B.!!$F1 2971
3 TraesCS5A01G454900 chr5B 639135179 639137120 1941 False 614.500000 883 79.853500 1115 3018 2 chr5B.!!$F2 1903
4 TraesCS5A01G454900 chr5D 368572893 368576809 3916 False 1983.000000 2298 92.058500 889 3769 2 chr5D.!!$F1 2880
5 TraesCS5A01G454900 chr5D 507914346 507921564 7218 True 748.000000 2734 86.461571 455 3801 7 chr5D.!!$R1 3346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.027455 CGCGCGATGCCTTTTTGATA 59.973 50.0 28.94 0.0 42.08 2.15 F
402 403 0.040425 CCGCGCACTAAAAGCAGTTT 60.040 50.0 8.75 0.0 0.00 2.66 F
2155 2431 0.099613 CCTCAGTGGTCATCGACTCG 59.900 60.0 0.00 0.0 30.46 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 2240 0.167470 TCTCGAACTTGTAGCCGTCG 59.833 55.0 0.00 0.0 0.00 5.12 R
2275 2654 1.121378 TGTCCAGTTTACACGTGGGA 58.879 50.0 21.57 12.6 31.70 4.37 R
3593 5335 0.529378 CCAAGGCATTCTGGCAACTC 59.471 55.0 3.43 0.0 46.46 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.941609 ACATCTTTCGCTGCCGAT 57.058 50.000 0.00 0.00 43.97 4.18
19 20 1.571919 ACATCTTTCGCTGCCGATAC 58.428 50.000 0.00 0.00 43.97 2.24
20 21 1.134818 ACATCTTTCGCTGCCGATACA 60.135 47.619 0.00 0.00 43.97 2.29
21 22 2.138320 CATCTTTCGCTGCCGATACAT 58.862 47.619 0.00 0.00 43.97 2.29
22 23 1.852942 TCTTTCGCTGCCGATACATC 58.147 50.000 0.00 0.00 43.97 3.06
23 24 1.136110 TCTTTCGCTGCCGATACATCA 59.864 47.619 0.00 0.00 43.97 3.07
24 25 1.933181 CTTTCGCTGCCGATACATCAA 59.067 47.619 0.00 0.00 43.97 2.57
25 26 2.238942 TTCGCTGCCGATACATCAAT 57.761 45.000 0.00 0.00 43.97 2.57
26 27 1.783284 TCGCTGCCGATACATCAATC 58.217 50.000 0.00 0.00 38.82 2.67
27 28 1.341209 TCGCTGCCGATACATCAATCT 59.659 47.619 0.00 0.00 38.82 2.40
28 29 2.556622 TCGCTGCCGATACATCAATCTA 59.443 45.455 0.00 0.00 38.82 1.98
29 30 3.193479 TCGCTGCCGATACATCAATCTAT 59.807 43.478 0.00 0.00 38.82 1.98
30 31 3.305361 CGCTGCCGATACATCAATCTATG 59.695 47.826 0.00 0.00 36.29 2.23
31 32 4.498241 GCTGCCGATACATCAATCTATGA 58.502 43.478 0.00 0.00 43.67 2.15
32 33 4.931601 GCTGCCGATACATCAATCTATGAA 59.068 41.667 0.00 0.00 42.54 2.57
33 34 5.583854 GCTGCCGATACATCAATCTATGAAT 59.416 40.000 0.00 0.00 42.54 2.57
34 35 6.238049 GCTGCCGATACATCAATCTATGAATC 60.238 42.308 0.00 0.00 42.54 2.52
35 36 5.807011 TGCCGATACATCAATCTATGAATCG 59.193 40.000 0.00 0.00 42.15 3.34
36 37 5.807520 GCCGATACATCAATCTATGAATCGT 59.192 40.000 9.04 0.00 41.47 3.73
37 38 6.972901 GCCGATACATCAATCTATGAATCGTA 59.027 38.462 9.04 1.40 41.47 3.43
38 39 7.166638 GCCGATACATCAATCTATGAATCGTAG 59.833 40.741 3.15 3.15 41.47 3.51
39 40 8.398665 CCGATACATCAATCTATGAATCGTAGA 58.601 37.037 13.90 13.90 41.47 2.59
40 41 9.774742 CGATACATCAATCTATGAATCGTAGAA 57.225 33.333 15.30 1.08 42.54 2.10
55 56 5.624344 TCGTAGAATATTCTAGGAAGGCG 57.376 43.478 31.38 24.67 45.96 5.52
56 57 5.068636 TCGTAGAATATTCTAGGAAGGCGT 58.931 41.667 31.38 8.14 45.96 5.68
57 58 6.233434 TCGTAGAATATTCTAGGAAGGCGTA 58.767 40.000 31.38 16.21 45.96 4.42
58 59 6.370994 TCGTAGAATATTCTAGGAAGGCGTAG 59.629 42.308 31.38 13.20 45.96 3.51
59 60 6.149142 CGTAGAATATTCTAGGAAGGCGTAGT 59.851 42.308 29.11 4.77 44.32 2.73
60 61 6.980416 AGAATATTCTAGGAAGGCGTAGTT 57.020 37.500 16.50 0.00 35.34 2.24
61 62 9.007901 GTAGAATATTCTAGGAAGGCGTAGTTA 57.992 37.037 22.76 0.00 40.23 2.24
62 63 7.884257 AGAATATTCTAGGAAGGCGTAGTTAC 58.116 38.462 16.50 0.00 35.34 2.50
63 64 4.933505 ATTCTAGGAAGGCGTAGTTACC 57.066 45.455 0.00 0.00 34.81 2.85
64 65 2.659428 TCTAGGAAGGCGTAGTTACCC 58.341 52.381 0.00 0.00 34.81 3.69
65 66 1.336125 CTAGGAAGGCGTAGTTACCCG 59.664 57.143 0.00 0.00 0.00 5.28
66 67 1.142531 GGAAGGCGTAGTTACCCGG 59.857 63.158 0.00 0.00 0.00 5.73
67 68 1.142531 GAAGGCGTAGTTACCCGGG 59.857 63.158 22.25 22.25 0.00 5.73
68 69 2.913054 GAAGGCGTAGTTACCCGGGC 62.913 65.000 24.08 3.92 0.00 6.13
69 70 4.878682 GGCGTAGTTACCCGGGCG 62.879 72.222 24.08 16.53 0.00 6.13
70 71 4.878682 GCGTAGTTACCCGGGCGG 62.879 72.222 24.08 2.77 37.81 6.13
71 72 3.140141 CGTAGTTACCCGGGCGGA 61.140 66.667 24.08 2.49 37.50 5.54
72 73 2.492773 CGTAGTTACCCGGGCGGAT 61.493 63.158 24.08 7.33 37.50 4.18
73 74 1.825341 GTAGTTACCCGGGCGGATT 59.175 57.895 24.08 2.16 37.50 3.01
74 75 1.039856 GTAGTTACCCGGGCGGATTA 58.960 55.000 24.08 0.89 37.50 1.75
75 76 1.412343 GTAGTTACCCGGGCGGATTAA 59.588 52.381 24.08 8.61 37.50 1.40
76 77 1.134228 AGTTACCCGGGCGGATTAAT 58.866 50.000 24.08 0.00 37.50 1.40
77 78 1.071228 AGTTACCCGGGCGGATTAATC 59.929 52.381 24.08 6.93 37.50 1.75
78 79 0.397564 TTACCCGGGCGGATTAATCC 59.602 55.000 24.08 22.63 43.65 3.01
79 80 1.482748 TACCCGGGCGGATTAATCCC 61.483 60.000 25.60 18.37 44.24 3.85
80 81 2.033602 CCGGGCGGATTAATCCCC 59.966 66.667 25.60 24.58 44.24 4.81
81 82 2.824880 CCGGGCGGATTAATCCCCA 61.825 63.158 28.80 0.00 44.24 4.96
82 83 1.378762 CGGGCGGATTAATCCCCAT 59.621 57.895 28.80 0.00 44.24 4.00
83 84 0.960364 CGGGCGGATTAATCCCCATG 60.960 60.000 28.80 21.26 44.24 3.66
84 85 1.250840 GGGCGGATTAATCCCCATGC 61.251 60.000 28.80 24.19 44.24 4.06
85 86 0.251341 GGCGGATTAATCCCCATGCT 60.251 55.000 25.60 0.00 44.24 3.79
86 87 0.883833 GCGGATTAATCCCCATGCTG 59.116 55.000 25.60 12.68 44.24 4.41
87 88 1.545428 GCGGATTAATCCCCATGCTGA 60.545 52.381 25.60 0.00 44.24 4.26
88 89 2.430465 CGGATTAATCCCCATGCTGAG 58.570 52.381 25.60 7.28 44.24 3.35
89 90 2.038952 CGGATTAATCCCCATGCTGAGA 59.961 50.000 25.60 0.00 44.24 3.27
90 91 3.683802 GGATTAATCCCCATGCTGAGAG 58.316 50.000 22.09 0.00 41.20 3.20
91 92 2.645838 TTAATCCCCATGCTGAGAGC 57.354 50.000 0.00 0.00 42.82 4.09
108 109 3.665173 GAGCATCTCCAACAATCGTTC 57.335 47.619 0.00 0.00 31.13 3.95
109 110 3.002791 GAGCATCTCCAACAATCGTTCA 58.997 45.455 0.00 0.00 31.13 3.18
110 111 3.411446 AGCATCTCCAACAATCGTTCAA 58.589 40.909 0.00 0.00 31.13 2.69
111 112 4.012374 AGCATCTCCAACAATCGTTCAAT 58.988 39.130 0.00 0.00 31.13 2.57
112 113 4.100529 GCATCTCCAACAATCGTTCAATG 58.899 43.478 0.00 0.00 31.13 2.82
113 114 3.829886 TCTCCAACAATCGTTCAATGC 57.170 42.857 0.00 0.00 31.13 3.56
114 115 2.159430 TCTCCAACAATCGTTCAATGCG 59.841 45.455 0.00 0.00 31.13 4.73
115 116 0.984109 CCAACAATCGTTCAATGCGC 59.016 50.000 0.00 0.00 31.13 6.09
116 117 0.629767 CAACAATCGTTCAATGCGCG 59.370 50.000 0.00 0.00 31.13 6.86
117 118 0.454285 AACAATCGTTCAATGCGCGG 60.454 50.000 8.83 0.00 0.00 6.46
118 119 2.100216 AATCGTTCAATGCGCGGC 59.900 55.556 8.83 0.00 0.00 6.53
119 120 3.716856 AATCGTTCAATGCGCGGCG 62.717 57.895 19.62 19.62 0.00 6.46
122 123 3.788766 GTTCAATGCGCGGCGTCT 61.789 61.111 24.46 8.65 0.00 4.18
123 124 2.125872 TTCAATGCGCGGCGTCTA 60.126 55.556 24.46 11.19 0.00 2.59
124 125 1.738464 TTCAATGCGCGGCGTCTAA 60.738 52.632 24.46 7.90 0.00 2.10
125 126 1.292571 TTCAATGCGCGGCGTCTAAA 61.293 50.000 24.46 9.43 0.00 1.85
126 127 1.133664 CAATGCGCGGCGTCTAAAA 59.866 52.632 24.46 3.53 0.00 1.52
127 128 0.453615 CAATGCGCGGCGTCTAAAAA 60.454 50.000 24.46 1.76 0.00 1.94
142 143 3.555401 AAAAACAGGTTTACCGCGC 57.445 47.368 0.00 0.00 42.08 6.86
143 144 0.317186 AAAAACAGGTTTACCGCGCG 60.317 50.000 25.67 25.67 42.08 6.86
144 145 2.720561 AAAACAGGTTTACCGCGCGC 62.721 55.000 27.36 23.91 42.08 6.86
145 146 4.973055 ACAGGTTTACCGCGCGCA 62.973 61.111 32.61 11.84 42.08 6.09
146 147 3.718097 CAGGTTTACCGCGCGCAA 61.718 61.111 32.61 17.78 42.08 4.85
147 148 3.419759 AGGTTTACCGCGCGCAAG 61.420 61.111 32.61 23.79 42.08 4.01
148 149 3.719144 GGTTTACCGCGCGCAAGT 61.719 61.111 32.61 28.15 41.68 3.16
149 150 2.381967 GGTTTACCGCGCGCAAGTA 61.382 57.895 32.61 27.04 41.68 2.24
150 151 1.492436 GTTTACCGCGCGCAAGTAA 59.508 52.632 29.36 29.36 41.68 2.24
151 152 0.110733 GTTTACCGCGCGCAAGTAAA 60.111 50.000 34.42 34.42 41.68 2.01
152 153 0.797542 TTTACCGCGCGCAAGTAAAT 59.202 45.000 34.42 16.45 41.68 1.40
153 154 0.797542 TTACCGCGCGCAAGTAAATT 59.202 45.000 30.33 11.11 41.68 1.82
154 155 0.797542 TACCGCGCGCAAGTAAATTT 59.202 45.000 32.61 6.89 41.68 1.82
155 156 0.039888 ACCGCGCGCAAGTAAATTTT 60.040 45.000 32.61 0.29 41.68 1.82
156 157 1.056869 CCGCGCGCAAGTAAATTTTT 58.943 45.000 32.61 0.00 41.68 1.94
174 175 2.074547 TTTTGGGACGCTAGAAGACG 57.925 50.000 0.00 0.00 0.00 4.18
175 176 0.963962 TTTGGGACGCTAGAAGACGT 59.036 50.000 0.00 0.00 46.91 4.34
176 177 0.963962 TTGGGACGCTAGAAGACGTT 59.036 50.000 0.00 0.00 43.71 3.99
177 178 0.963962 TGGGACGCTAGAAGACGTTT 59.036 50.000 0.00 0.00 43.71 3.60
178 179 1.336517 TGGGACGCTAGAAGACGTTTG 60.337 52.381 0.00 0.00 43.71 2.93
179 180 0.714439 GGACGCTAGAAGACGTTTGC 59.286 55.000 0.00 0.00 43.71 3.68
180 181 1.669211 GGACGCTAGAAGACGTTTGCT 60.669 52.381 0.00 0.00 43.71 3.91
181 182 1.649662 GACGCTAGAAGACGTTTGCTC 59.350 52.381 0.00 0.00 43.71 4.26
182 183 0.992802 CGCTAGAAGACGTTTGCTCC 59.007 55.000 0.00 0.00 0.00 4.70
183 184 1.668919 CGCTAGAAGACGTTTGCTCCA 60.669 52.381 0.00 0.00 0.00 3.86
184 185 2.413837 GCTAGAAGACGTTTGCTCCAA 58.586 47.619 0.00 0.00 0.00 3.53
185 186 2.157863 GCTAGAAGACGTTTGCTCCAAC 59.842 50.000 0.00 0.00 0.00 3.77
186 187 2.325583 AGAAGACGTTTGCTCCAACA 57.674 45.000 0.00 0.00 0.00 3.33
187 188 2.639065 AGAAGACGTTTGCTCCAACAA 58.361 42.857 0.00 0.00 0.00 2.83
188 189 2.614057 AGAAGACGTTTGCTCCAACAAG 59.386 45.455 0.00 0.00 0.00 3.16
189 190 0.663153 AGACGTTTGCTCCAACAAGC 59.337 50.000 0.00 0.00 42.82 4.01
190 191 4.210447 CGTTTGCTCCAACAAGCG 57.790 55.556 0.00 0.00 45.37 4.68
191 192 1.355210 CGTTTGCTCCAACAAGCGT 59.645 52.632 5.51 0.00 45.50 5.07
192 193 0.248458 CGTTTGCTCCAACAAGCGTT 60.248 50.000 5.51 0.00 45.50 4.84
211 212 3.205095 CAAAATATGCTGCGCGCG 58.795 55.556 28.44 28.44 43.27 6.86
212 213 2.651863 AAAATATGCTGCGCGCGC 60.652 55.556 45.02 45.02 43.27 6.86
213 214 4.943591 AAATATGCTGCGCGCGCG 62.944 61.111 45.73 45.73 45.51 6.86
228 229 3.998672 GCGAGTCCAACGGTCCCA 61.999 66.667 0.00 0.00 0.00 4.37
229 230 2.738480 CGAGTCCAACGGTCCCAA 59.262 61.111 0.00 0.00 0.00 4.12
230 231 1.295423 CGAGTCCAACGGTCCCAAT 59.705 57.895 0.00 0.00 0.00 3.16
231 232 0.739813 CGAGTCCAACGGTCCCAATC 60.740 60.000 0.00 0.00 0.00 2.67
232 233 0.323629 GAGTCCAACGGTCCCAATCA 59.676 55.000 0.00 0.00 0.00 2.57
233 234 0.768622 AGTCCAACGGTCCCAATCAA 59.231 50.000 0.00 0.00 0.00 2.57
234 235 1.165270 GTCCAACGGTCCCAATCAAG 58.835 55.000 0.00 0.00 0.00 3.02
235 236 0.608035 TCCAACGGTCCCAATCAAGC 60.608 55.000 0.00 0.00 0.00 4.01
236 237 1.501741 CAACGGTCCCAATCAAGCG 59.498 57.895 0.00 0.00 41.80 4.68
237 238 1.674322 AACGGTCCCAATCAAGCGG 60.674 57.895 0.00 0.00 40.47 5.52
238 239 2.046314 CGGTCCCAATCAAGCGGT 60.046 61.111 0.00 0.00 33.05 5.68
239 240 2.106683 CGGTCCCAATCAAGCGGTC 61.107 63.158 0.00 0.00 33.05 4.79
240 241 1.749258 GGTCCCAATCAAGCGGTCC 60.749 63.158 0.00 0.00 0.00 4.46
241 242 1.749258 GTCCCAATCAAGCGGTCCC 60.749 63.158 0.00 0.00 0.00 4.46
242 243 2.227757 TCCCAATCAAGCGGTCCCA 61.228 57.895 0.00 0.00 0.00 4.37
243 244 1.076777 CCCAATCAAGCGGTCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
244 245 1.103398 CCCAATCAAGCGGTCCCATC 61.103 60.000 0.00 0.00 0.00 3.51
245 246 0.107017 CCAATCAAGCGGTCCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
246 247 1.019673 CAATCAAGCGGTCCCATCTG 58.980 55.000 0.00 0.00 0.00 2.90
247 248 0.749454 AATCAAGCGGTCCCATCTGC 60.749 55.000 0.00 0.00 39.72 4.26
248 249 1.913951 ATCAAGCGGTCCCATCTGCA 61.914 55.000 0.00 0.00 41.63 4.41
249 250 1.675310 CAAGCGGTCCCATCTGCAA 60.675 57.895 0.00 0.00 41.63 4.08
250 251 1.675641 AAGCGGTCCCATCTGCAAC 60.676 57.895 0.00 0.00 41.63 4.17
251 252 2.359850 GCGGTCCCATCTGCAACA 60.360 61.111 0.00 0.00 39.28 3.33
252 253 2.401766 GCGGTCCCATCTGCAACAG 61.402 63.158 0.00 0.00 39.28 3.16
253 254 1.003355 CGGTCCCATCTGCAACAGT 60.003 57.895 0.00 0.00 32.61 3.55
254 255 1.021390 CGGTCCCATCTGCAACAGTC 61.021 60.000 0.00 0.00 32.61 3.51
255 256 0.678048 GGTCCCATCTGCAACAGTCC 60.678 60.000 0.00 0.00 32.61 3.85
256 257 0.036732 GTCCCATCTGCAACAGTCCA 59.963 55.000 0.00 0.00 32.61 4.02
257 258 0.325933 TCCCATCTGCAACAGTCCAG 59.674 55.000 0.00 0.00 32.61 3.86
258 259 0.325933 CCCATCTGCAACAGTCCAGA 59.674 55.000 6.39 6.39 41.81 3.86
259 260 1.678123 CCCATCTGCAACAGTCCAGAG 60.678 57.143 9.13 3.42 41.00 3.35
260 261 1.002888 CCATCTGCAACAGTCCAGAGT 59.997 52.381 9.13 0.00 41.00 3.24
261 262 2.551721 CCATCTGCAACAGTCCAGAGTT 60.552 50.000 9.13 0.00 41.00 3.01
262 263 3.144506 CATCTGCAACAGTCCAGAGTTT 58.855 45.455 9.13 0.00 41.00 2.66
263 264 2.564771 TCTGCAACAGTCCAGAGTTTG 58.435 47.619 0.00 0.00 33.44 2.93
264 265 1.002033 CTGCAACAGTCCAGAGTTTGC 60.002 52.381 11.91 11.91 0.00 3.68
265 266 1.024271 GCAACAGTCCAGAGTTTGCA 58.976 50.000 13.07 0.00 0.00 4.08
266 267 1.002033 GCAACAGTCCAGAGTTTGCAG 60.002 52.381 13.07 0.00 0.00 4.41
267 268 1.002033 CAACAGTCCAGAGTTTGCAGC 60.002 52.381 0.00 0.00 0.00 5.25
268 269 0.882042 ACAGTCCAGAGTTTGCAGCG 60.882 55.000 0.00 0.00 0.00 5.18
269 270 1.963338 AGTCCAGAGTTTGCAGCGC 60.963 57.895 0.00 0.00 0.00 5.92
270 271 3.043713 TCCAGAGTTTGCAGCGCG 61.044 61.111 0.00 0.00 0.00 6.86
271 272 4.748679 CCAGAGTTTGCAGCGCGC 62.749 66.667 26.66 26.66 42.89 6.86
290 291 4.201951 CGACCAGGCGCACTAAAT 57.798 55.556 10.83 0.00 0.00 1.40
291 292 3.355816 CGACCAGGCGCACTAAATA 57.644 52.632 10.83 0.00 0.00 1.40
292 293 1.865865 CGACCAGGCGCACTAAATAT 58.134 50.000 10.83 0.00 0.00 1.28
293 294 1.526887 CGACCAGGCGCACTAAATATG 59.473 52.381 10.83 0.00 0.00 1.78
294 295 1.873591 GACCAGGCGCACTAAATATGG 59.126 52.381 10.83 6.18 0.00 2.74
295 296 1.211949 ACCAGGCGCACTAAATATGGT 59.788 47.619 10.83 6.84 34.80 3.55
296 297 1.603802 CCAGGCGCACTAAATATGGTG 59.396 52.381 10.83 0.00 40.71 4.17
301 302 3.437845 CACTAAATATGGTGCGCGC 57.562 52.632 27.26 27.26 30.89 6.86
302 303 0.383002 CACTAAATATGGTGCGCGCG 60.383 55.000 28.44 28.44 30.89 6.86
303 304 0.528901 ACTAAATATGGTGCGCGCGA 60.529 50.000 37.18 16.49 0.00 5.87
304 305 0.790207 CTAAATATGGTGCGCGCGAT 59.210 50.000 37.18 21.98 0.00 4.58
305 306 0.510790 TAAATATGGTGCGCGCGATG 59.489 50.000 37.18 4.86 0.00 3.84
306 307 2.715864 AAATATGGTGCGCGCGATGC 62.716 55.000 37.18 21.43 41.47 3.91
311 312 4.759096 GTGCGCGCGATGCCTTTT 62.759 61.111 37.18 0.00 42.08 2.27
312 313 4.036804 TGCGCGCGATGCCTTTTT 62.037 55.556 37.18 0.00 42.08 1.94
313 314 3.535491 GCGCGCGATGCCTTTTTG 61.535 61.111 37.18 0.00 42.08 2.44
314 315 2.175566 CGCGCGATGCCTTTTTGA 59.824 55.556 28.94 0.00 42.08 2.69
315 316 1.226379 CGCGCGATGCCTTTTTGAT 60.226 52.632 28.94 0.00 42.08 2.57
316 317 0.027455 CGCGCGATGCCTTTTTGATA 59.973 50.000 28.94 0.00 42.08 2.15
317 318 1.466855 GCGCGATGCCTTTTTGATAC 58.533 50.000 12.10 0.00 37.76 2.24
318 319 1.730176 CGCGATGCCTTTTTGATACG 58.270 50.000 0.00 0.00 0.00 3.06
319 320 1.466855 GCGATGCCTTTTTGATACGC 58.533 50.000 0.00 0.00 38.23 4.42
320 321 1.730176 CGATGCCTTTTTGATACGCG 58.270 50.000 3.53 3.53 0.00 6.01
321 322 1.466855 GATGCCTTTTTGATACGCGC 58.533 50.000 5.73 0.00 0.00 6.86
322 323 0.248054 ATGCCTTTTTGATACGCGCG 60.248 50.000 30.96 30.96 0.00 6.86
323 324 2.214948 GCCTTTTTGATACGCGCGC 61.215 57.895 32.58 23.91 0.00 6.86
324 325 1.423845 CCTTTTTGATACGCGCGCT 59.576 52.632 32.58 18.63 0.00 5.92
325 326 0.857311 CCTTTTTGATACGCGCGCTG 60.857 55.000 32.58 23.88 0.00 5.18
326 327 1.455908 CTTTTTGATACGCGCGCTGC 61.456 55.000 32.58 19.38 41.47 5.25
327 328 2.176418 TTTTTGATACGCGCGCTGCA 62.176 50.000 32.58 21.94 46.97 4.41
328 329 1.976478 TTTTGATACGCGCGCTGCAT 61.976 50.000 32.58 18.01 46.97 3.96
329 330 1.976478 TTTGATACGCGCGCTGCATT 61.976 50.000 32.58 12.24 46.97 3.56
330 331 1.148759 TTGATACGCGCGCTGCATTA 61.149 50.000 32.58 14.38 46.97 1.90
331 332 1.128611 GATACGCGCGCTGCATTAG 59.871 57.895 32.58 14.15 46.97 1.73
332 333 1.548973 GATACGCGCGCTGCATTAGT 61.549 55.000 32.58 19.47 46.97 2.24
333 334 1.151777 ATACGCGCGCTGCATTAGTT 61.152 50.000 32.58 8.80 46.97 2.24
334 335 0.525882 TACGCGCGCTGCATTAGTTA 60.526 50.000 32.58 7.62 46.97 2.24
335 336 1.151777 ACGCGCGCTGCATTAGTTAT 61.152 50.000 32.58 1.37 46.97 1.89
336 337 0.781787 CGCGCGCTGCATTAGTTATA 59.218 50.000 30.48 0.00 46.97 0.98
337 338 1.201704 CGCGCGCTGCATTAGTTATAG 60.202 52.381 30.48 3.74 46.97 1.31
338 339 1.462541 GCGCGCTGCATTAGTTATAGC 60.463 52.381 26.67 0.00 45.45 2.97
341 342 2.493997 GCTGCATTAGTTATAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
342 343 1.462541 GCTGCATTAGTTATAGCGCGC 60.463 52.381 26.66 26.66 0.00 6.86
343 344 0.781787 TGCATTAGTTATAGCGCGCG 59.218 50.000 28.44 28.44 0.00 6.86
344 345 0.516524 GCATTAGTTATAGCGCGCGC 60.517 55.000 45.10 45.10 42.33 6.86
362 363 2.028043 GCTTTTTGTGCGGCTGCT 59.972 55.556 20.27 0.00 43.34 4.24
363 364 2.305127 GCTTTTTGTGCGGCTGCTG 61.305 57.895 20.27 3.55 43.34 4.41
364 365 1.662446 CTTTTTGTGCGGCTGCTGG 60.662 57.895 20.27 0.00 43.34 4.85
365 366 2.074230 CTTTTTGTGCGGCTGCTGGA 62.074 55.000 20.27 4.18 43.34 3.86
366 367 2.074230 TTTTTGTGCGGCTGCTGGAG 62.074 55.000 20.27 0.00 43.34 3.86
367 368 2.956799 TTTTGTGCGGCTGCTGGAGA 62.957 55.000 20.27 2.60 43.34 3.71
368 369 2.753009 TTTGTGCGGCTGCTGGAGAT 62.753 55.000 20.27 0.00 43.34 2.75
369 370 2.437359 GTGCGGCTGCTGGAGATT 60.437 61.111 20.27 0.00 43.34 2.40
370 371 2.124983 TGCGGCTGCTGGAGATTC 60.125 61.111 20.27 0.00 43.34 2.52
371 372 2.899339 GCGGCTGCTGGAGATTCC 60.899 66.667 11.21 0.00 38.39 3.01
372 373 2.586245 CGGCTGCTGGAGATTCCA 59.414 61.111 0.00 0.00 45.98 3.53
380 381 2.470311 TGGAGATTCCAAACCGGGT 58.530 52.632 6.32 0.00 45.00 5.28
381 382 0.326927 TGGAGATTCCAAACCGGGTC 59.673 55.000 6.32 0.00 45.00 4.46
382 383 0.393944 GGAGATTCCAAACCGGGTCC 60.394 60.000 6.32 0.00 36.28 4.46
383 384 0.393944 GAGATTCCAAACCGGGTCCC 60.394 60.000 6.32 0.00 34.36 4.46
384 385 1.379443 GATTCCAAACCGGGTCCCC 60.379 63.158 6.32 0.00 34.36 4.81
394 395 4.397832 GGGTCCCCGCGCACTAAA 62.398 66.667 8.75 0.00 0.00 1.85
395 396 2.358984 GGTCCCCGCGCACTAAAA 60.359 61.111 8.75 0.00 0.00 1.52
396 397 2.396157 GGTCCCCGCGCACTAAAAG 61.396 63.158 8.75 0.00 0.00 2.27
397 398 2.744709 TCCCCGCGCACTAAAAGC 60.745 61.111 8.75 0.00 0.00 3.51
398 399 3.053291 CCCCGCGCACTAAAAGCA 61.053 61.111 8.75 0.00 0.00 3.91
399 400 2.480555 CCCGCGCACTAAAAGCAG 59.519 61.111 8.75 0.00 0.00 4.24
400 401 2.325082 CCCGCGCACTAAAAGCAGT 61.325 57.895 8.75 0.00 0.00 4.40
401 402 1.574428 CCGCGCACTAAAAGCAGTT 59.426 52.632 8.75 0.00 0.00 3.16
402 403 0.040425 CCGCGCACTAAAAGCAGTTT 60.040 50.000 8.75 0.00 0.00 2.66
403 404 1.599419 CCGCGCACTAAAAGCAGTTTT 60.599 47.619 8.75 0.00 39.31 2.43
404 405 2.116366 CGCGCACTAAAAGCAGTTTTT 58.884 42.857 8.75 0.28 41.68 1.94
405 406 3.293262 CGCGCACTAAAAGCAGTTTTTA 58.707 40.909 8.75 2.57 39.61 1.52
406 407 3.911964 CGCGCACTAAAAGCAGTTTTTAT 59.088 39.130 8.75 0.00 39.74 1.40
407 408 5.083389 CGCGCACTAAAAGCAGTTTTTATA 58.917 37.500 8.75 0.00 39.74 0.98
408 409 5.002189 CGCGCACTAAAAGCAGTTTTTATAC 59.998 40.000 8.75 0.00 39.74 1.47
409 410 5.285370 GCGCACTAAAAGCAGTTTTTATACC 59.715 40.000 0.30 0.00 39.74 2.73
410 411 5.506832 CGCACTAAAAGCAGTTTTTATACCG 59.493 40.000 2.95 3.19 39.74 4.02
411 412 5.285370 GCACTAAAAGCAGTTTTTATACCGC 59.715 40.000 2.95 1.37 39.74 5.68
412 413 5.506832 CACTAAAAGCAGTTTTTATACCGCG 59.493 40.000 0.00 0.00 39.74 6.46
413 414 2.537639 AAGCAGTTTTTATACCGCGC 57.462 45.000 0.00 0.00 0.00 6.86
414 415 0.372334 AGCAGTTTTTATACCGCGCG 59.628 50.000 25.67 25.67 0.00 6.86
415 416 0.587985 GCAGTTTTTATACCGCGCGG 60.588 55.000 44.88 44.88 42.03 6.46
416 417 0.587985 CAGTTTTTATACCGCGCGGC 60.588 55.000 46.22 27.83 39.32 6.53
437 438 3.784883 GCTCATATAGCGCTTCTGTTG 57.215 47.619 18.68 7.21 42.53 3.33
438 439 2.478134 GCTCATATAGCGCTTCTGTTGG 59.522 50.000 18.68 2.18 42.53 3.77
439 440 3.800261 GCTCATATAGCGCTTCTGTTGGA 60.800 47.826 18.68 3.88 42.53 3.53
440 441 3.982475 TCATATAGCGCTTCTGTTGGAG 58.018 45.455 18.68 0.00 0.00 3.86
441 442 3.636764 TCATATAGCGCTTCTGTTGGAGA 59.363 43.478 18.68 0.00 0.00 3.71
442 443 4.281941 TCATATAGCGCTTCTGTTGGAGAT 59.718 41.667 18.68 0.28 0.00 2.75
443 444 2.299993 TAGCGCTTCTGTTGGAGATG 57.700 50.000 18.68 0.00 0.00 2.90
444 445 1.023513 AGCGCTTCTGTTGGAGATGC 61.024 55.000 2.64 0.00 44.71 3.91
445 446 1.023513 GCGCTTCTGTTGGAGATGCT 61.024 55.000 0.00 0.00 45.55 3.79
446 447 1.005340 CGCTTCTGTTGGAGATGCTC 58.995 55.000 0.00 0.00 45.55 4.26
447 448 1.405256 CGCTTCTGTTGGAGATGCTCT 60.405 52.381 0.00 0.00 45.55 4.09
448 449 2.008329 GCTTCTGTTGGAGATGCTCTG 58.992 52.381 0.00 0.00 44.73 3.35
449 450 2.354503 GCTTCTGTTGGAGATGCTCTGA 60.355 50.000 0.00 0.00 44.73 3.27
450 451 3.682155 GCTTCTGTTGGAGATGCTCTGAT 60.682 47.826 0.00 0.00 44.73 2.90
451 452 3.815856 TCTGTTGGAGATGCTCTGATC 57.184 47.619 0.00 0.00 0.00 2.92
452 453 3.372897 TCTGTTGGAGATGCTCTGATCT 58.627 45.455 0.00 0.00 35.27 2.75
453 454 3.773667 TCTGTTGGAGATGCTCTGATCTT 59.226 43.478 0.00 0.00 32.57 2.40
514 515 3.058160 CCAAGCCGCCAGGAACAG 61.058 66.667 0.00 0.00 41.02 3.16
546 547 0.319469 GGAGAGCTATGCCTCGCTTC 60.319 60.000 0.00 0.00 36.45 3.86
571 572 3.181462 TGCTATGACCTAGGCAACATCTG 60.181 47.826 9.30 9.81 41.41 2.90
572 573 3.805108 GCTATGACCTAGGCAACATCTGG 60.805 52.174 9.30 7.70 41.41 3.86
591 592 2.199652 CCCCGCAACCAACACATGT 61.200 57.895 0.00 0.00 0.00 3.21
621 622 9.579768 GTTGAATTTAATGGTATGCAACATGTA 57.420 29.630 0.00 0.00 35.66 2.29
647 648 1.348538 TACACACCGATTGCGCTTCG 61.349 55.000 21.29 21.29 35.83 3.79
653 654 1.343821 CGATTGCGCTTCGGTACAC 59.656 57.895 20.74 0.00 33.05 2.90
686 687 1.327460 CATGTTGACCGCCGAATACTG 59.673 52.381 0.00 0.00 0.00 2.74
696 697 1.933853 GCCGAATACTGCACGAATCTT 59.066 47.619 0.00 0.00 0.00 2.40
699 700 4.143305 GCCGAATACTGCACGAATCTTATC 60.143 45.833 0.00 0.00 0.00 1.75
701 702 4.431728 CGAATACTGCACGAATCTTATCGC 60.432 45.833 0.00 0.00 46.51 4.58
703 704 2.196749 ACTGCACGAATCTTATCGCTG 58.803 47.619 0.00 0.00 46.51 5.18
716 717 1.586422 ATCGCTGTATCATGTGGCAC 58.414 50.000 11.55 11.55 0.00 5.01
732 733 1.332144 GCACCCACATACCCGGTAGA 61.332 60.000 0.00 0.00 0.00 2.59
733 734 1.196911 CACCCACATACCCGGTAGAA 58.803 55.000 0.00 0.00 0.00 2.10
734 735 1.555992 CACCCACATACCCGGTAGAAA 59.444 52.381 0.00 0.00 0.00 2.52
735 736 1.556451 ACCCACATACCCGGTAGAAAC 59.444 52.381 0.00 0.00 0.00 2.78
736 737 1.134310 CCCACATACCCGGTAGAAACC 60.134 57.143 0.00 0.00 42.95 3.27
737 738 1.134310 CCACATACCCGGTAGAAACCC 60.134 57.143 0.00 0.00 43.54 4.11
738 739 1.555992 CACATACCCGGTAGAAACCCA 59.444 52.381 0.00 0.00 43.54 4.51
739 740 2.027007 CACATACCCGGTAGAAACCCAA 60.027 50.000 0.00 0.00 43.54 4.12
810 811 8.537728 AATTTCCAAATTGGTAGCAGATATCA 57.462 30.769 12.28 0.00 39.03 2.15
923 1055 3.686016 GGCCAGGAAATTAAGTGAGTGA 58.314 45.455 0.00 0.00 0.00 3.41
924 1056 3.691609 GGCCAGGAAATTAAGTGAGTGAG 59.308 47.826 0.00 0.00 0.00 3.51
925 1057 3.691609 GCCAGGAAATTAAGTGAGTGAGG 59.308 47.826 0.00 0.00 0.00 3.86
926 1058 4.565652 GCCAGGAAATTAAGTGAGTGAGGA 60.566 45.833 0.00 0.00 0.00 3.71
927 1059 5.560724 CCAGGAAATTAAGTGAGTGAGGAA 58.439 41.667 0.00 0.00 0.00 3.36
928 1060 6.183347 CCAGGAAATTAAGTGAGTGAGGAAT 58.817 40.000 0.00 0.00 0.00 3.01
929 1061 6.660949 CCAGGAAATTAAGTGAGTGAGGAATT 59.339 38.462 0.00 0.00 0.00 2.17
930 1062 7.362401 CCAGGAAATTAAGTGAGTGAGGAATTG 60.362 40.741 0.00 0.00 0.00 2.32
1171 1329 2.097160 CACGAGCATTGCGTCTGC 59.903 61.111 2.38 0.00 40.44 4.26
1415 1583 4.595538 CAGCCCGCCGCCGTATTA 62.596 66.667 0.00 0.00 38.78 0.98
1416 1584 4.295119 AGCCCGCCGCCGTATTAG 62.295 66.667 0.00 0.00 38.78 1.73
1422 1606 2.882366 GCCGCCGTATTAGCTGCAC 61.882 63.158 1.02 0.00 39.87 4.57
1427 1611 0.178068 CCGTATTAGCTGCACCACCT 59.822 55.000 1.02 0.00 0.00 4.00
1461 1645 2.522836 CGGAGGATGGATTCTGACAG 57.477 55.000 0.00 0.00 0.00 3.51
1464 1648 2.103941 GGAGGATGGATTCTGACAGGTC 59.896 54.545 1.81 1.62 0.00 3.85
1465 1649 3.037549 GAGGATGGATTCTGACAGGTCT 58.962 50.000 1.81 0.00 0.00 3.85
1715 1941 0.537188 CTGCAGACTACGGGGTTGAT 59.463 55.000 8.42 0.00 0.00 2.57
1754 1980 0.808755 GGTTCGGTCATTTCGGCATT 59.191 50.000 0.00 0.00 0.00 3.56
1854 2119 5.982890 ACAATAATGTTCCTTGAACCTGG 57.017 39.130 4.65 0.00 41.35 4.45
1975 2240 2.165301 CGCGTTCATCGAAGACCCC 61.165 63.158 0.00 0.00 42.51 4.95
2155 2431 0.099613 CCTCAGTGGTCATCGACTCG 59.900 60.000 0.00 0.00 30.46 4.18
2158 2434 2.579787 GTGGTCATCGACTCGCCG 60.580 66.667 0.00 0.00 32.47 6.46
2239 2515 4.998051 ACAACCCTGAATACAAGGTGATT 58.002 39.130 0.00 0.00 39.62 2.57
2240 2516 4.766891 ACAACCCTGAATACAAGGTGATTG 59.233 41.667 0.00 0.00 39.62 2.67
2243 2519 4.019174 CCCTGAATACAAGGTGATTGCTT 58.981 43.478 0.00 0.00 43.15 3.91
2252 2528 4.523943 ACAAGGTGATTGCTTTGCTCAATA 59.476 37.500 0.00 0.00 43.15 1.90
2261 2640 9.074576 TGATTGCTTTGCTCAATATATCATCTT 57.925 29.630 0.00 0.00 34.59 2.40
2262 2641 9.343103 GATTGCTTTGCTCAATATATCATCTTG 57.657 33.333 0.00 0.00 34.59 3.02
2270 2649 9.617523 TGCTCAATATATCATCTTGTTTCTTGA 57.382 29.630 0.00 0.00 0.00 3.02
2280 2659 5.576447 TCTTGTTTCTTGAAAAGTCCCAC 57.424 39.130 0.00 0.00 46.34 4.61
2420 2805 3.165875 GGAGTGCCTATGCTCAGGTATA 58.834 50.000 6.12 0.00 38.05 1.47
2483 2875 1.115467 ACCGCCAATTGTTGTTCCAA 58.885 45.000 4.43 0.00 0.00 3.53
2484 2876 1.482593 ACCGCCAATTGTTGTTCCAAA 59.517 42.857 4.43 0.00 0.00 3.28
2485 2877 2.103941 ACCGCCAATTGTTGTTCCAAAT 59.896 40.909 4.43 0.00 0.00 2.32
2486 2878 2.479656 CCGCCAATTGTTGTTCCAAATG 59.520 45.455 4.43 0.00 0.00 2.32
2487 2879 3.129871 CGCCAATTGTTGTTCCAAATGT 58.870 40.909 4.43 0.00 0.00 2.71
2488 2880 3.559242 CGCCAATTGTTGTTCCAAATGTT 59.441 39.130 4.43 0.00 0.00 2.71
2489 2881 4.552378 CGCCAATTGTTGTTCCAAATGTTG 60.552 41.667 4.43 0.00 0.00 3.33
2490 2882 4.789161 GCCAATTGTTGTTCCAAATGTTGC 60.789 41.667 4.43 0.00 0.00 4.17
2491 2883 4.575645 CCAATTGTTGTTCCAAATGTTGCT 59.424 37.500 4.43 0.00 0.00 3.91
2492 2884 5.503498 CAATTGTTGTTCCAAATGTTGCTG 58.497 37.500 0.00 0.00 0.00 4.41
2493 2885 2.548875 TGTTGTTCCAAATGTTGCTGC 58.451 42.857 0.00 0.00 0.00 5.25
2494 2886 2.093816 TGTTGTTCCAAATGTTGCTGCA 60.094 40.909 0.00 0.00 0.00 4.41
2495 2887 3.132925 GTTGTTCCAAATGTTGCTGCAT 58.867 40.909 1.84 0.00 0.00 3.96
2496 2888 3.472283 TGTTCCAAATGTTGCTGCATT 57.528 38.095 1.84 0.00 40.43 3.56
2641 3034 1.154205 GGATCGGCACCAAGATCACG 61.154 60.000 7.59 0.00 43.61 4.35
2896 4362 2.810400 GCGCATAGGCTTTGGGAGAATA 60.810 50.000 22.58 0.00 38.10 1.75
2925 4391 4.821805 TCTCTGGAGAACAACAAATGGAAC 59.178 41.667 0.00 0.00 33.91 3.62
2967 4433 7.420800 CAACTCCAGTTTTATAGATGCCATTC 58.579 38.462 0.00 0.00 35.83 2.67
3033 4500 4.698780 TGAAATGTGAGCTCAGAAGAATGG 59.301 41.667 18.89 0.00 0.00 3.16
3107 4574 1.337260 GCGCCTCCATGAGTGTATAGG 60.337 57.143 0.00 0.00 0.00 2.57
3257 4992 8.206867 TGATAGCACTATATCCATAAATGAGCC 58.793 37.037 0.00 0.00 32.18 4.70
3360 5097 8.363390 GTCTCACTCAATGTCATAGATATCCAA 58.637 37.037 0.00 0.00 0.00 3.53
3367 5104 9.304335 TCAATGTCATAGATATCCAATTGCATT 57.696 29.630 0.00 1.82 0.00 3.56
3380 5122 6.866480 TCCAATTGCATTGAAGAAAGGATAC 58.134 36.000 0.00 0.00 42.83 2.24
3593 5335 0.250124 TTGAGGTGTGGCTACCAACG 60.250 55.000 12.78 0.00 43.37 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.224042 TGATGTATCGGCAGCGAAAGAT 60.224 45.455 0.00 0.00 0.00 2.40
3 4 1.136110 TGATGTATCGGCAGCGAAAGA 59.864 47.619 0.00 0.00 0.00 2.52
4 5 1.570813 TGATGTATCGGCAGCGAAAG 58.429 50.000 0.00 0.00 0.00 2.62
5 6 2.017138 TTGATGTATCGGCAGCGAAA 57.983 45.000 0.00 0.00 0.00 3.46
6 7 2.135139 GATTGATGTATCGGCAGCGAA 58.865 47.619 0.00 0.00 0.00 4.70
7 8 1.341209 AGATTGATGTATCGGCAGCGA 59.659 47.619 0.00 0.00 0.00 4.93
8 9 1.788258 AGATTGATGTATCGGCAGCG 58.212 50.000 0.00 0.00 0.00 5.18
9 10 4.498241 TCATAGATTGATGTATCGGCAGC 58.502 43.478 0.00 0.00 0.00 5.25
10 11 6.020041 CGATTCATAGATTGATGTATCGGCAG 60.020 42.308 14.08 0.00 45.65 4.85
11 12 5.807011 CGATTCATAGATTGATGTATCGGCA 59.193 40.000 14.08 0.00 45.65 5.69
12 13 6.266203 CGATTCATAGATTGATGTATCGGC 57.734 41.667 14.08 0.00 45.65 5.54
28 29 8.254508 GCCTTCCTAGAATATTCTACGATTCAT 58.745 37.037 19.23 0.00 38.70 2.57
29 30 7.575155 CGCCTTCCTAGAATATTCTACGATTCA 60.575 40.741 19.23 7.38 38.70 2.57
30 31 6.748198 CGCCTTCCTAGAATATTCTACGATTC 59.252 42.308 19.23 11.85 38.70 2.52
31 32 6.208994 ACGCCTTCCTAGAATATTCTACGATT 59.791 38.462 25.44 10.76 38.70 3.34
32 33 5.711036 ACGCCTTCCTAGAATATTCTACGAT 59.289 40.000 25.44 13.95 38.70 3.73
33 34 5.068636 ACGCCTTCCTAGAATATTCTACGA 58.931 41.667 25.44 21.02 38.70 3.43
34 35 5.373981 ACGCCTTCCTAGAATATTCTACG 57.626 43.478 19.23 20.02 38.70 3.51
35 36 7.451501 ACTACGCCTTCCTAGAATATTCTAC 57.548 40.000 19.23 9.14 38.70 2.59
36 37 9.007901 GTAACTACGCCTTCCTAGAATATTCTA 57.992 37.037 21.24 21.24 38.70 2.10
37 38 6.980416 AACTACGCCTTCCTAGAATATTCT 57.020 37.500 21.28 21.28 41.24 2.40
38 39 7.089538 GGTAACTACGCCTTCCTAGAATATTC 58.910 42.308 7.41 7.41 0.00 1.75
39 40 6.014755 GGGTAACTACGCCTTCCTAGAATATT 60.015 42.308 0.00 0.00 33.54 1.28
40 41 5.479724 GGGTAACTACGCCTTCCTAGAATAT 59.520 44.000 0.00 0.00 33.54 1.28
41 42 4.829492 GGGTAACTACGCCTTCCTAGAATA 59.171 45.833 0.00 0.00 33.54 1.75
42 43 3.640498 GGGTAACTACGCCTTCCTAGAAT 59.360 47.826 0.00 0.00 33.54 2.40
43 44 3.026694 GGGTAACTACGCCTTCCTAGAA 58.973 50.000 0.00 0.00 33.54 2.10
44 45 2.659428 GGGTAACTACGCCTTCCTAGA 58.341 52.381 0.00 0.00 33.54 2.43
45 46 1.336125 CGGGTAACTACGCCTTCCTAG 59.664 57.143 0.00 0.00 35.94 3.02
46 47 1.392589 CGGGTAACTACGCCTTCCTA 58.607 55.000 0.00 0.00 35.94 2.94
47 48 1.325476 CCGGGTAACTACGCCTTCCT 61.325 60.000 0.00 0.00 35.94 3.36
48 49 1.142531 CCGGGTAACTACGCCTTCC 59.857 63.158 0.00 0.00 35.94 3.46
49 50 1.142531 CCCGGGTAACTACGCCTTC 59.857 63.158 14.18 0.00 35.94 3.46
50 51 3.022710 GCCCGGGTAACTACGCCTT 62.023 63.158 24.63 0.00 35.94 4.35
51 52 3.464494 GCCCGGGTAACTACGCCT 61.464 66.667 24.63 0.00 35.94 5.52
52 53 4.878682 CGCCCGGGTAACTACGCC 62.879 72.222 24.63 0.00 35.94 5.68
53 54 4.878682 CCGCCCGGGTAACTACGC 62.879 72.222 24.63 3.29 35.99 4.42
54 55 2.019897 AATCCGCCCGGGTAACTACG 62.020 60.000 24.63 15.83 37.00 3.51
55 56 1.039856 TAATCCGCCCGGGTAACTAC 58.960 55.000 24.63 2.31 37.00 2.73
56 57 1.786937 TTAATCCGCCCGGGTAACTA 58.213 50.000 24.63 4.82 37.00 2.24
57 58 1.071228 GATTAATCCGCCCGGGTAACT 59.929 52.381 24.63 5.89 37.00 2.24
58 59 1.516161 GATTAATCCGCCCGGGTAAC 58.484 55.000 24.63 4.07 37.00 2.50
59 60 0.397564 GGATTAATCCGCCCGGGTAA 59.602 55.000 24.63 12.84 37.19 2.85
60 61 2.060370 GGATTAATCCGCCCGGGTA 58.940 57.895 24.63 8.75 37.19 3.69
61 62 2.833957 GGATTAATCCGCCCGGGT 59.166 61.111 24.63 3.56 37.19 5.28
68 69 2.038952 TCTCAGCATGGGGATTAATCCG 59.961 50.000 24.91 14.04 41.05 4.18
69 70 3.683802 CTCTCAGCATGGGGATTAATCC 58.316 50.000 24.14 24.14 37.03 3.01
70 71 3.080319 GCTCTCAGCATGGGGATTAATC 58.920 50.000 6.93 6.93 41.89 1.75
71 72 3.151912 GCTCTCAGCATGGGGATTAAT 57.848 47.619 0.00 0.00 41.89 1.40
72 73 2.645838 GCTCTCAGCATGGGGATTAA 57.354 50.000 0.00 0.00 41.89 1.40
83 84 2.105006 TTGTTGGAGATGCTCTCAGC 57.895 50.000 13.06 0.00 45.12 4.26
84 85 2.864946 CGATTGTTGGAGATGCTCTCAG 59.135 50.000 13.06 0.00 45.12 3.35
85 86 2.234661 ACGATTGTTGGAGATGCTCTCA 59.765 45.455 13.06 0.00 45.12 3.27
86 87 2.898705 ACGATTGTTGGAGATGCTCTC 58.101 47.619 0.00 5.01 42.66 3.20
87 88 3.265791 GAACGATTGTTGGAGATGCTCT 58.734 45.455 2.13 0.00 38.78 4.09
88 89 3.002791 TGAACGATTGTTGGAGATGCTC 58.997 45.455 2.13 0.00 38.78 4.26
89 90 3.057969 TGAACGATTGTTGGAGATGCT 57.942 42.857 2.13 0.00 38.78 3.79
90 91 3.829886 TTGAACGATTGTTGGAGATGC 57.170 42.857 2.13 0.00 38.78 3.91
91 92 4.100529 GCATTGAACGATTGTTGGAGATG 58.899 43.478 2.13 3.53 38.78 2.90
92 93 3.181507 CGCATTGAACGATTGTTGGAGAT 60.182 43.478 2.13 0.00 38.78 2.75
93 94 2.159430 CGCATTGAACGATTGTTGGAGA 59.841 45.455 2.13 0.00 38.78 3.71
94 95 2.508867 CGCATTGAACGATTGTTGGAG 58.491 47.619 2.13 0.00 38.78 3.86
95 96 1.400888 GCGCATTGAACGATTGTTGGA 60.401 47.619 0.30 0.00 38.78 3.53
96 97 0.984109 GCGCATTGAACGATTGTTGG 59.016 50.000 0.30 0.00 38.78 3.77
97 98 0.629767 CGCGCATTGAACGATTGTTG 59.370 50.000 8.75 0.00 38.78 3.33
98 99 0.454285 CCGCGCATTGAACGATTGTT 60.454 50.000 8.75 0.00 42.23 2.83
99 100 1.134487 CCGCGCATTGAACGATTGT 59.866 52.632 8.75 0.00 0.00 2.71
100 101 2.216920 GCCGCGCATTGAACGATTG 61.217 57.895 8.75 0.00 0.00 2.67
101 102 2.100216 GCCGCGCATTGAACGATT 59.900 55.556 8.75 0.00 0.00 3.34
102 103 4.222589 CGCCGCGCATTGAACGAT 62.223 61.111 8.75 0.00 0.00 3.73
105 106 1.962092 TTAGACGCCGCGCATTGAAC 61.962 55.000 13.88 0.00 0.00 3.18
106 107 1.292571 TTTAGACGCCGCGCATTGAA 61.293 50.000 13.88 0.00 0.00 2.69
107 108 1.292571 TTTTAGACGCCGCGCATTGA 61.293 50.000 13.88 0.00 0.00 2.57
108 109 0.453615 TTTTTAGACGCCGCGCATTG 60.454 50.000 13.88 0.00 0.00 2.82
109 110 1.870383 TTTTTAGACGCCGCGCATT 59.130 47.368 13.88 0.78 0.00 3.56
110 111 3.568686 TTTTTAGACGCCGCGCAT 58.431 50.000 13.88 3.92 0.00 4.73
124 125 0.317186 CGCGCGGTAAACCTGTTTTT 60.317 50.000 24.84 0.00 34.23 1.94
125 126 1.280444 CGCGCGGTAAACCTGTTTT 59.720 52.632 24.84 0.00 34.23 2.43
126 127 2.940561 CGCGCGGTAAACCTGTTT 59.059 55.556 24.84 0.45 36.63 2.83
127 128 3.719144 GCGCGCGGTAAACCTGTT 61.719 61.111 33.06 0.00 0.00 3.16
128 129 4.973055 TGCGCGCGGTAAACCTGT 62.973 61.111 33.06 0.00 0.00 4.00
129 130 3.645157 CTTGCGCGCGGTAAACCTG 62.645 63.158 33.06 6.95 0.00 4.00
130 131 2.768503 TACTTGCGCGCGGTAAACCT 62.769 55.000 33.06 7.09 0.00 3.50
131 132 1.899521 TTACTTGCGCGCGGTAAACC 61.900 55.000 31.95 14.22 0.00 3.27
132 133 0.110733 TTTACTTGCGCGCGGTAAAC 60.111 50.000 35.57 15.04 32.67 2.01
133 134 0.797542 ATTTACTTGCGCGCGGTAAA 59.202 45.000 38.11 38.11 38.95 2.01
134 135 0.797542 AATTTACTTGCGCGCGGTAA 59.202 45.000 31.07 31.07 0.00 2.85
135 136 0.797542 AAATTTACTTGCGCGCGGTA 59.202 45.000 33.06 26.38 0.00 4.02
136 137 0.039888 AAAATTTACTTGCGCGCGGT 60.040 45.000 33.06 27.44 0.00 5.68
137 138 1.056869 AAAAATTTACTTGCGCGCGG 58.943 45.000 33.06 23.22 0.00 6.46
154 155 2.224113 ACGTCTTCTAGCGTCCCAAAAA 60.224 45.455 0.00 0.00 36.54 1.94
155 156 1.342174 ACGTCTTCTAGCGTCCCAAAA 59.658 47.619 0.00 0.00 36.54 2.44
156 157 0.963962 ACGTCTTCTAGCGTCCCAAA 59.036 50.000 0.00 0.00 36.54 3.28
157 158 0.963962 AACGTCTTCTAGCGTCCCAA 59.036 50.000 0.00 0.00 40.70 4.12
158 159 0.963962 AAACGTCTTCTAGCGTCCCA 59.036 50.000 0.00 0.00 40.70 4.37
159 160 1.347320 CAAACGTCTTCTAGCGTCCC 58.653 55.000 0.00 0.00 40.70 4.46
160 161 0.714439 GCAAACGTCTTCTAGCGTCC 59.286 55.000 0.00 0.00 40.70 4.79
161 162 1.649662 GAGCAAACGTCTTCTAGCGTC 59.350 52.381 0.00 0.00 40.70 5.19
162 163 1.669211 GGAGCAAACGTCTTCTAGCGT 60.669 52.381 0.00 0.00 43.64 5.07
163 164 0.992802 GGAGCAAACGTCTTCTAGCG 59.007 55.000 0.00 0.00 0.00 4.26
164 165 2.080286 TGGAGCAAACGTCTTCTAGC 57.920 50.000 0.00 0.00 0.00 3.42
165 166 3.390135 TGTTGGAGCAAACGTCTTCTAG 58.610 45.455 0.00 0.00 32.47 2.43
166 167 3.462483 TGTTGGAGCAAACGTCTTCTA 57.538 42.857 0.00 0.00 32.47 2.10
167 168 2.325583 TGTTGGAGCAAACGTCTTCT 57.674 45.000 0.00 0.00 32.47 2.85
168 169 2.854805 GCTTGTTGGAGCAAACGTCTTC 60.855 50.000 0.00 0.00 42.25 2.87
169 170 1.065551 GCTTGTTGGAGCAAACGTCTT 59.934 47.619 0.00 0.00 42.25 3.01
170 171 0.663153 GCTTGTTGGAGCAAACGTCT 59.337 50.000 0.00 0.00 42.25 4.18
171 172 0.657368 CGCTTGTTGGAGCAAACGTC 60.657 55.000 0.00 0.00 42.83 4.34
172 173 1.355210 CGCTTGTTGGAGCAAACGT 59.645 52.632 0.00 0.00 42.83 3.99
173 174 0.248458 AACGCTTGTTGGAGCAAACG 60.248 50.000 0.00 0.00 42.83 3.60
174 175 3.641031 AACGCTTGTTGGAGCAAAC 57.359 47.368 0.00 0.00 42.83 2.93
211 212 2.798148 ATTGGGACCGTTGGACTCGC 62.798 60.000 0.00 0.00 0.00 5.03
212 213 0.739813 GATTGGGACCGTTGGACTCG 60.740 60.000 0.00 0.00 0.00 4.18
213 214 0.323629 TGATTGGGACCGTTGGACTC 59.676 55.000 0.00 0.00 0.00 3.36
214 215 0.768622 TTGATTGGGACCGTTGGACT 59.231 50.000 0.00 0.00 0.00 3.85
215 216 1.165270 CTTGATTGGGACCGTTGGAC 58.835 55.000 0.00 0.00 0.00 4.02
216 217 0.608035 GCTTGATTGGGACCGTTGGA 60.608 55.000 0.00 0.00 0.00 3.53
217 218 1.883021 GCTTGATTGGGACCGTTGG 59.117 57.895 0.00 0.00 0.00 3.77
218 219 1.501741 CGCTTGATTGGGACCGTTG 59.498 57.895 0.00 0.00 0.00 4.10
219 220 1.674322 CCGCTTGATTGGGACCGTT 60.674 57.895 0.00 0.00 0.00 4.44
220 221 2.046314 CCGCTTGATTGGGACCGT 60.046 61.111 0.00 0.00 0.00 4.83
221 222 2.046314 ACCGCTTGATTGGGACCG 60.046 61.111 0.00 0.00 0.00 4.79
222 223 1.749258 GGACCGCTTGATTGGGACC 60.749 63.158 0.00 0.00 0.00 4.46
223 224 1.749258 GGGACCGCTTGATTGGGAC 60.749 63.158 0.00 0.00 0.00 4.46
224 225 1.570857 ATGGGACCGCTTGATTGGGA 61.571 55.000 0.00 0.00 0.00 4.37
225 226 1.076777 ATGGGACCGCTTGATTGGG 60.077 57.895 0.00 0.00 0.00 4.12
226 227 0.107017 AGATGGGACCGCTTGATTGG 60.107 55.000 0.00 0.00 0.00 3.16
227 228 1.019673 CAGATGGGACCGCTTGATTG 58.980 55.000 0.00 0.00 0.00 2.67
228 229 0.749454 GCAGATGGGACCGCTTGATT 60.749 55.000 0.00 0.00 0.00 2.57
229 230 1.153086 GCAGATGGGACCGCTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
230 231 2.123248 TTGCAGATGGGACCGCTTGA 62.123 55.000 0.00 0.00 0.00 3.02
231 232 1.675310 TTGCAGATGGGACCGCTTG 60.675 57.895 0.00 0.00 0.00 4.01
232 233 1.675641 GTTGCAGATGGGACCGCTT 60.676 57.895 0.00 0.00 0.00 4.68
233 234 2.045926 GTTGCAGATGGGACCGCT 60.046 61.111 0.00 0.00 0.00 5.52
234 235 2.359850 TGTTGCAGATGGGACCGC 60.360 61.111 0.00 0.00 0.00 5.68
235 236 1.003355 ACTGTTGCAGATGGGACCG 60.003 57.895 2.91 0.00 35.18 4.79
236 237 0.678048 GGACTGTTGCAGATGGGACC 60.678 60.000 2.91 0.00 35.18 4.46
237 238 0.036732 TGGACTGTTGCAGATGGGAC 59.963 55.000 2.91 0.00 35.18 4.46
238 239 0.325933 CTGGACTGTTGCAGATGGGA 59.674 55.000 2.91 0.00 43.79 4.37
239 240 0.325933 TCTGGACTGTTGCAGATGGG 59.674 55.000 2.91 0.00 44.67 4.00
240 241 3.942351 TCTGGACTGTTGCAGATGG 57.058 52.632 2.91 0.00 44.67 3.51
244 245 1.002033 GCAAACTCTGGACTGTTGCAG 60.002 52.381 2.01 0.00 42.47 4.41
245 246 1.024271 GCAAACTCTGGACTGTTGCA 58.976 50.000 2.01 0.00 0.00 4.08
246 247 1.002033 CTGCAAACTCTGGACTGTTGC 60.002 52.381 0.00 0.00 0.00 4.17
247 248 1.002033 GCTGCAAACTCTGGACTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
248 249 1.312815 GCTGCAAACTCTGGACTGTT 58.687 50.000 0.00 0.00 0.00 3.16
249 250 0.882042 CGCTGCAAACTCTGGACTGT 60.882 55.000 0.00 0.00 0.00 3.55
250 251 1.864862 CGCTGCAAACTCTGGACTG 59.135 57.895 0.00 0.00 0.00 3.51
251 252 1.963338 GCGCTGCAAACTCTGGACT 60.963 57.895 0.00 0.00 0.00 3.85
252 253 2.558313 GCGCTGCAAACTCTGGAC 59.442 61.111 0.00 0.00 0.00 4.02
253 254 3.043713 CGCGCTGCAAACTCTGGA 61.044 61.111 5.56 0.00 0.00 3.86
254 255 4.748679 GCGCGCTGCAAACTCTGG 62.749 66.667 26.67 0.00 45.45 3.86
273 274 1.526887 CATATTTAGTGCGCCTGGTCG 59.473 52.381 4.18 6.22 0.00 4.79
274 275 1.873591 CCATATTTAGTGCGCCTGGTC 59.126 52.381 4.18 0.00 0.00 4.02
275 276 1.211949 ACCATATTTAGTGCGCCTGGT 59.788 47.619 4.18 2.24 0.00 4.00
276 277 1.603802 CACCATATTTAGTGCGCCTGG 59.396 52.381 4.18 1.59 0.00 4.45
283 284 0.383002 CGCGCGCACCATATTTAGTG 60.383 55.000 32.61 5.56 37.05 2.74
284 285 0.528901 TCGCGCGCACCATATTTAGT 60.529 50.000 32.61 0.00 0.00 2.24
285 286 0.790207 ATCGCGCGCACCATATTTAG 59.210 50.000 32.61 10.59 0.00 1.85
286 287 0.510790 CATCGCGCGCACCATATTTA 59.489 50.000 32.61 3.42 0.00 1.40
287 288 1.279539 CATCGCGCGCACCATATTT 59.720 52.632 32.61 2.46 0.00 1.40
288 289 2.938253 CATCGCGCGCACCATATT 59.062 55.556 32.61 3.63 0.00 1.28
289 290 3.716006 GCATCGCGCGCACCATAT 61.716 61.111 32.61 9.61 0.00 1.78
294 295 4.759096 AAAAGGCATCGCGCGCAC 62.759 61.111 32.61 16.50 43.84 5.34
295 296 4.036804 AAAAAGGCATCGCGCGCA 62.037 55.556 32.61 18.69 43.84 6.09
296 297 3.535491 CAAAAAGGCATCGCGCGC 61.535 61.111 27.95 23.91 43.84 6.86
297 298 0.027455 TATCAAAAAGGCATCGCGCG 59.973 50.000 26.76 26.76 43.84 6.86
298 299 1.466855 GTATCAAAAAGGCATCGCGC 58.533 50.000 0.00 0.00 41.28 6.86
299 300 1.730176 CGTATCAAAAAGGCATCGCG 58.270 50.000 0.00 0.00 0.00 5.87
300 301 1.466855 GCGTATCAAAAAGGCATCGC 58.533 50.000 0.00 0.00 36.06 4.58
301 302 1.730176 CGCGTATCAAAAAGGCATCG 58.270 50.000 0.00 0.00 0.00 3.84
302 303 1.466855 GCGCGTATCAAAAAGGCATC 58.533 50.000 8.43 0.00 0.00 3.91
303 304 0.248054 CGCGCGTATCAAAAAGGCAT 60.248 50.000 24.19 0.00 0.00 4.40
304 305 1.133664 CGCGCGTATCAAAAAGGCA 59.866 52.632 24.19 0.00 0.00 4.75
305 306 2.214948 GCGCGCGTATCAAAAAGGC 61.215 57.895 32.35 5.62 0.00 4.35
306 307 0.857311 CAGCGCGCGTATCAAAAAGG 60.857 55.000 32.35 2.93 0.00 3.11
307 308 1.455908 GCAGCGCGCGTATCAAAAAG 61.456 55.000 32.35 11.29 0.00 2.27
308 309 1.511043 GCAGCGCGCGTATCAAAAA 60.511 52.632 32.35 0.00 0.00 1.94
309 310 1.976478 ATGCAGCGCGCGTATCAAAA 61.976 50.000 32.35 11.20 46.97 2.44
310 311 1.976478 AATGCAGCGCGCGTATCAAA 61.976 50.000 32.35 12.88 46.97 2.69
311 312 1.148759 TAATGCAGCGCGCGTATCAA 61.149 50.000 32.35 14.02 46.97 2.57
312 313 1.548132 CTAATGCAGCGCGCGTATCA 61.548 55.000 32.35 24.41 46.97 2.15
313 314 1.128611 CTAATGCAGCGCGCGTATC 59.871 57.895 32.35 19.64 46.97 2.24
314 315 1.151777 AACTAATGCAGCGCGCGTAT 61.152 50.000 32.35 21.40 46.97 3.06
315 316 0.525882 TAACTAATGCAGCGCGCGTA 60.526 50.000 32.35 20.06 46.97 4.42
316 317 1.151777 ATAACTAATGCAGCGCGCGT 61.152 50.000 32.35 15.53 46.97 6.01
317 318 0.781787 TATAACTAATGCAGCGCGCG 59.218 50.000 28.44 28.44 46.97 6.86
318 319 1.462541 GCTATAACTAATGCAGCGCGC 60.463 52.381 26.66 26.66 42.89 6.86
319 320 2.493997 GCTATAACTAATGCAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
322 323 1.462541 GCGCGCTATAACTAATGCAGC 60.463 52.381 26.67 0.00 0.00 5.25
323 324 1.201704 CGCGCGCTATAACTAATGCAG 60.202 52.381 30.48 3.74 0.00 4.41
324 325 0.781787 CGCGCGCTATAACTAATGCA 59.218 50.000 30.48 0.00 0.00 3.96
325 326 0.516524 GCGCGCGCTATAACTAATGC 60.517 55.000 44.38 16.88 38.26 3.56
326 327 0.246374 CGCGCGCGCTATAACTAATG 60.246 55.000 45.97 26.31 39.32 1.90
327 328 2.059575 CGCGCGCGCTATAACTAAT 58.940 52.632 45.97 0.00 39.32 1.73
328 329 3.517974 CGCGCGCGCTATAACTAA 58.482 55.556 45.97 0.00 39.32 2.24
345 346 2.028043 AGCAGCCGCACAAAAAGC 59.972 55.556 0.00 0.00 42.27 3.51
346 347 1.662446 CCAGCAGCCGCACAAAAAG 60.662 57.895 0.00 0.00 42.27 2.27
347 348 2.074230 CTCCAGCAGCCGCACAAAAA 62.074 55.000 0.00 0.00 42.27 1.94
348 349 2.518112 TCCAGCAGCCGCACAAAA 60.518 55.556 0.00 0.00 42.27 2.44
349 350 2.753009 ATCTCCAGCAGCCGCACAAA 62.753 55.000 0.00 0.00 42.27 2.83
350 351 2.753009 AATCTCCAGCAGCCGCACAA 62.753 55.000 0.00 0.00 42.27 3.33
351 352 3.258228 AATCTCCAGCAGCCGCACA 62.258 57.895 0.00 0.00 42.27 4.57
352 353 2.437359 AATCTCCAGCAGCCGCAC 60.437 61.111 0.00 0.00 42.27 5.34
353 354 2.124983 GAATCTCCAGCAGCCGCA 60.125 61.111 0.00 0.00 42.27 5.69
354 355 2.899339 GGAATCTCCAGCAGCCGC 60.899 66.667 0.00 0.00 36.28 6.53
355 356 2.586245 TGGAATCTCCAGCAGCCG 59.414 61.111 0.00 0.00 42.67 5.52
362 363 0.326927 GACCCGGTTTGGAATCTCCA 59.673 55.000 0.00 0.00 46.61 3.86
363 364 0.393944 GGACCCGGTTTGGAATCTCC 60.394 60.000 0.00 0.00 42.00 3.71
364 365 0.393944 GGGACCCGGTTTGGAATCTC 60.394 60.000 0.00 0.00 42.00 2.75
365 366 1.689412 GGGACCCGGTTTGGAATCT 59.311 57.895 0.00 0.00 42.00 2.40
366 367 4.331622 GGGACCCGGTTTGGAATC 57.668 61.111 0.00 0.00 42.00 2.52
379 380 3.035576 GCTTTTAGTGCGCGGGGAC 62.036 63.158 16.47 16.47 34.21 4.46
380 381 2.744709 GCTTTTAGTGCGCGGGGA 60.745 61.111 8.83 0.00 0.00 4.81
381 382 3.039202 CTGCTTTTAGTGCGCGGGG 62.039 63.158 8.83 0.00 0.00 5.73
382 383 1.852067 AACTGCTTTTAGTGCGCGGG 61.852 55.000 8.83 0.00 34.42 6.13
383 384 0.040425 AAACTGCTTTTAGTGCGCGG 60.040 50.000 8.83 0.00 36.17 6.46
384 385 1.753956 AAAACTGCTTTTAGTGCGCG 58.246 45.000 0.00 0.00 0.00 6.86
385 386 5.285370 GGTATAAAAACTGCTTTTAGTGCGC 59.715 40.000 0.00 0.00 41.62 6.09
386 387 5.506832 CGGTATAAAAACTGCTTTTAGTGCG 59.493 40.000 2.87 0.00 41.62 5.34
387 388 5.285370 GCGGTATAAAAACTGCTTTTAGTGC 59.715 40.000 0.63 1.17 46.27 4.40
388 389 6.848470 GCGGTATAAAAACTGCTTTTAGTG 57.152 37.500 0.63 0.00 46.27 2.74
396 397 0.587985 CCGCGCGGTATAAAAACTGC 60.588 55.000 39.71 0.00 46.30 4.40
397 398 0.587985 GCCGCGCGGTATAAAAACTG 60.588 55.000 45.02 19.43 37.65 3.16
398 399 1.717348 GCCGCGCGGTATAAAAACT 59.283 52.632 45.02 0.00 37.65 2.66
399 400 4.273622 GCCGCGCGGTATAAAAAC 57.726 55.556 45.02 25.23 37.65 2.43
417 418 8.941372 ATCTCCAACAGAAGCGCTATATGAGC 62.941 46.154 12.05 0.00 40.53 4.26
418 419 3.982475 TCCAACAGAAGCGCTATATGAG 58.018 45.455 12.05 8.26 0.00 2.90
419 420 3.636764 TCTCCAACAGAAGCGCTATATGA 59.363 43.478 12.05 0.24 0.00 2.15
420 421 3.982475 TCTCCAACAGAAGCGCTATATG 58.018 45.455 12.05 12.78 0.00 1.78
421 422 4.564041 CATCTCCAACAGAAGCGCTATAT 58.436 43.478 12.05 0.00 33.62 0.86
422 423 3.800261 GCATCTCCAACAGAAGCGCTATA 60.800 47.826 12.05 0.00 36.17 1.31
423 424 2.831333 CATCTCCAACAGAAGCGCTAT 58.169 47.619 12.05 0.00 33.62 2.97
424 425 1.740380 GCATCTCCAACAGAAGCGCTA 60.740 52.381 12.05 0.00 36.17 4.26
425 426 1.023513 GCATCTCCAACAGAAGCGCT 61.024 55.000 2.64 2.64 36.17 5.92
426 427 1.427020 GCATCTCCAACAGAAGCGC 59.573 57.895 0.00 0.00 36.17 5.92
449 450 0.034059 GGCGACATGGATCCGAAGAT 59.966 55.000 7.39 0.00 34.57 2.40
450 451 1.441729 GGCGACATGGATCCGAAGA 59.558 57.895 7.39 0.00 0.00 2.87
451 452 1.951130 CGGCGACATGGATCCGAAG 60.951 63.158 7.39 1.58 44.23 3.79
452 453 2.106131 CGGCGACATGGATCCGAA 59.894 61.111 7.39 0.00 44.23 4.30
453 454 4.585526 GCGGCGACATGGATCCGA 62.586 66.667 20.81 0.00 44.23 4.55
476 477 0.682852 CGGGGGAACAGTACACTTCA 59.317 55.000 0.00 0.00 0.00 3.02
477 478 0.672711 GCGGGGGAACAGTACACTTC 60.673 60.000 0.00 0.00 0.00 3.01
514 515 5.708948 CATAGCTCTCCACTAAGCATACTC 58.291 45.833 0.00 0.00 41.06 2.59
546 547 3.544684 TGTTGCCTAGGTCATAGCATTG 58.455 45.455 11.31 0.00 0.00 2.82
572 573 3.302344 ATGTGTTGGTTGCGGGGC 61.302 61.111 0.00 0.00 0.00 5.80
591 592 7.928167 TGTTGCATACCATTAAATTCAACACAA 59.072 29.630 0.00 0.00 37.99 3.33
598 599 9.236691 CTGTACATGTTGCATACCATTAAATTC 57.763 33.333 2.30 0.00 0.00 2.17
621 622 2.346803 GCAATCGGTGTGTACATCTGT 58.653 47.619 0.00 0.00 0.00 3.41
635 636 1.343821 GTGTACCGAAGCGCAATCG 59.656 57.895 23.52 23.52 39.92 3.34
637 638 0.515564 GTTGTGTACCGAAGCGCAAT 59.484 50.000 11.47 0.00 37.42 3.56
660 661 2.025898 TCGGCGGTCAACATGTATAGA 58.974 47.619 7.21 0.00 0.00 1.98
686 687 3.981416 TGATACAGCGATAAGATTCGTGC 59.019 43.478 0.00 0.00 41.16 5.34
696 697 2.547855 GGTGCCACATGATACAGCGATA 60.548 50.000 0.00 0.00 0.00 2.92
699 700 1.439353 GGGTGCCACATGATACAGCG 61.439 60.000 0.00 0.00 0.00 5.18
700 701 0.394216 TGGGTGCCACATGATACAGC 60.394 55.000 0.00 3.48 0.00 4.40
701 702 3.880040 TGGGTGCCACATGATACAG 57.120 52.632 0.00 0.00 0.00 2.74
716 717 1.134310 GGTTTCTACCGGGTATGTGGG 60.134 57.143 6.32 0.00 34.01 4.61
721 722 2.643801 TGTTTGGGTTTCTACCGGGTAT 59.356 45.455 6.32 0.00 46.04 2.73
732 733 4.468153 TGGTTTTTCTAGCTGTTTGGGTTT 59.532 37.500 0.00 0.00 0.00 3.27
733 734 4.027437 TGGTTTTTCTAGCTGTTTGGGTT 58.973 39.130 0.00 0.00 0.00 4.11
734 735 3.383505 GTGGTTTTTCTAGCTGTTTGGGT 59.616 43.478 0.00 0.00 0.00 4.51
735 736 3.636764 AGTGGTTTTTCTAGCTGTTTGGG 59.363 43.478 0.00 0.00 0.00 4.12
736 737 4.580580 AGAGTGGTTTTTCTAGCTGTTTGG 59.419 41.667 0.00 0.00 0.00 3.28
737 738 5.296780 TGAGAGTGGTTTTTCTAGCTGTTTG 59.703 40.000 0.00 0.00 0.00 2.93
738 739 5.437060 TGAGAGTGGTTTTTCTAGCTGTTT 58.563 37.500 0.00 0.00 0.00 2.83
739 740 5.036117 TGAGAGTGGTTTTTCTAGCTGTT 57.964 39.130 0.00 0.00 0.00 3.16
792 793 8.978874 TGTTATGTGATATCTGCTACCAATTT 57.021 30.769 3.98 0.00 0.00 1.82
810 811 9.099454 GATTAGTAGTTTGCTAGCTTGTTATGT 57.901 33.333 17.23 0.00 0.00 2.29
923 1055 3.119316 CGCGCTATCTATCCTCAATTCCT 60.119 47.826 5.56 0.00 0.00 3.36
924 1056 3.119459 TCGCGCTATCTATCCTCAATTCC 60.119 47.826 5.56 0.00 0.00 3.01
925 1057 4.098055 TCGCGCTATCTATCCTCAATTC 57.902 45.455 5.56 0.00 0.00 2.17
926 1058 3.759086 TCTCGCGCTATCTATCCTCAATT 59.241 43.478 5.56 0.00 0.00 2.32
927 1059 3.348119 TCTCGCGCTATCTATCCTCAAT 58.652 45.455 5.56 0.00 0.00 2.57
928 1060 2.779506 TCTCGCGCTATCTATCCTCAA 58.220 47.619 5.56 0.00 0.00 3.02
929 1061 2.474410 TCTCGCGCTATCTATCCTCA 57.526 50.000 5.56 0.00 0.00 3.86
930 1062 3.753842 CTTTCTCGCGCTATCTATCCTC 58.246 50.000 5.56 0.00 0.00 3.71
1171 1329 3.438087 AGCAACAGATGAACGGAATCAAG 59.562 43.478 0.00 0.00 32.06 3.02
1297 1465 1.745141 GCCTCGTCATTGCTGGAGAAT 60.745 52.381 0.00 0.00 0.00 2.40
1408 1576 0.178068 AGGTGGTGCAGCTAATACGG 59.822 55.000 18.08 0.00 40.59 4.02
1410 1578 2.009774 CACAGGTGGTGCAGCTAATAC 58.990 52.381 18.08 6.50 40.40 1.89
1411 1579 2.401583 CACAGGTGGTGCAGCTAATA 57.598 50.000 18.08 0.00 40.40 0.98
1412 1580 3.254629 CACAGGTGGTGCAGCTAAT 57.745 52.632 18.08 0.00 40.40 1.73
1413 1581 4.798433 CACAGGTGGTGCAGCTAA 57.202 55.556 18.08 0.00 40.40 3.09
1422 1606 2.140717 GGTAAAGAACGACACAGGTGG 58.859 52.381 4.24 0.00 34.19 4.61
1427 1611 1.000060 CCTCCGGTAAAGAACGACACA 60.000 52.381 0.00 0.00 0.00 3.72
1461 1645 0.181350 ATTCATCGGCCAGGAAGACC 59.819 55.000 2.24 0.00 0.00 3.85
1464 1648 0.749091 TGCATTCATCGGCCAGGAAG 60.749 55.000 2.24 0.00 0.00 3.46
1465 1649 0.749091 CTGCATTCATCGGCCAGGAA 60.749 55.000 2.24 4.02 0.00 3.36
1474 1658 6.423302 CACTCTGTATAGAACCTGCATTCATC 59.577 42.308 3.04 0.00 31.21 2.92
1715 1941 0.514255 CCGCTCCGATATCGTACGAA 59.486 55.000 23.56 12.02 37.74 3.85
1754 1980 2.482336 GTGTGTTACATCATCGGTTGCA 59.518 45.455 0.00 0.00 0.00 4.08
1851 2116 0.937304 CTGTCGTGACAAACCACCAG 59.063 55.000 4.03 0.00 41.33 4.00
1854 2119 0.655733 CACCTGTCGTGACAAACCAC 59.344 55.000 4.03 0.00 46.20 4.16
1975 2240 0.167470 TCTCGAACTTGTAGCCGTCG 59.833 55.000 0.00 0.00 0.00 5.12
2148 2424 2.733671 CGTCACTACGGCGAGTCGA 61.734 63.158 18.61 10.03 45.50 4.20
2239 2515 7.812690 ACAAGATGATATATTGAGCAAAGCA 57.187 32.000 3.48 0.00 35.19 3.91
2240 2516 9.178427 GAAACAAGATGATATATTGAGCAAAGC 57.822 33.333 3.48 0.00 35.19 3.51
2252 2528 8.743714 GGGACTTTTCAAGAAACAAGATGATAT 58.256 33.333 0.00 0.00 0.00 1.63
2261 2640 3.127895 CACGTGGGACTTTTCAAGAAACA 59.872 43.478 7.95 0.00 0.00 2.83
2262 2641 3.128068 ACACGTGGGACTTTTCAAGAAAC 59.872 43.478 21.57 0.00 0.00 2.78
2270 2649 2.946990 CCAGTTTACACGTGGGACTTTT 59.053 45.455 21.57 0.00 0.00 2.27
2275 2654 1.121378 TGTCCAGTTTACACGTGGGA 58.879 50.000 21.57 12.60 31.70 4.37
2276 2655 1.871039 CTTGTCCAGTTTACACGTGGG 59.129 52.381 21.57 10.25 31.70 4.61
2280 2659 2.755650 AGAGCTTGTCCAGTTTACACG 58.244 47.619 0.00 0.00 0.00 4.49
2420 2805 8.074455 GCAAATGCAATGGAGTATGTCCTTCT 62.074 42.308 0.00 0.00 42.94 2.85
2457 2849 3.129871 ACAACAATTGGCGGTTCAAATG 58.870 40.909 10.83 0.00 34.65 2.32
2483 2875 3.947910 ACTTAGCAATGCAGCAACATT 57.052 38.095 8.35 0.00 40.90 2.71
2484 2876 3.508793 AGAACTTAGCAATGCAGCAACAT 59.491 39.130 8.35 0.00 36.85 2.71
2485 2877 2.886523 AGAACTTAGCAATGCAGCAACA 59.113 40.909 8.35 0.00 36.85 3.33
2486 2878 3.496155 GAGAACTTAGCAATGCAGCAAC 58.504 45.455 8.35 0.00 36.85 4.17
2487 2879 2.160219 CGAGAACTTAGCAATGCAGCAA 59.840 45.455 8.35 0.00 36.85 3.91
2488 2880 1.733912 CGAGAACTTAGCAATGCAGCA 59.266 47.619 8.35 0.00 36.85 4.41
2489 2881 1.063174 CCGAGAACTTAGCAATGCAGC 59.937 52.381 8.35 0.00 0.00 5.25
2490 2882 2.350522 ACCGAGAACTTAGCAATGCAG 58.649 47.619 8.35 0.00 0.00 4.41
2491 2883 2.472695 ACCGAGAACTTAGCAATGCA 57.527 45.000 8.35 0.00 0.00 3.96
2492 2884 3.303395 GCATACCGAGAACTTAGCAATGC 60.303 47.826 0.00 0.00 0.00 3.56
2493 2885 4.025396 CAGCATACCGAGAACTTAGCAATG 60.025 45.833 0.00 0.00 0.00 2.82
2494 2886 4.122776 CAGCATACCGAGAACTTAGCAAT 58.877 43.478 0.00 0.00 0.00 3.56
2495 2887 3.521560 CAGCATACCGAGAACTTAGCAA 58.478 45.455 0.00 0.00 0.00 3.91
2496 2888 2.159099 CCAGCATACCGAGAACTTAGCA 60.159 50.000 0.00 0.00 0.00 3.49
2896 4362 8.526147 CCATTTGTTGTTCTCCAGAGATTAAAT 58.474 33.333 0.00 0.33 37.29 1.40
2925 4391 0.318441 TTGGCTCTCGTTGTCCTCTG 59.682 55.000 0.00 0.00 0.00 3.35
2967 4433 5.083821 TCAAAATTTAACTTCTCCAGGGGG 58.916 41.667 0.00 0.00 0.00 5.40
3257 4992 7.493971 TCCTTGTAACATTTCCAAATTTGTGTG 59.506 33.333 16.73 11.31 0.00 3.82
3309 5044 6.589139 CCGCATGTATCTGCATGGATATATAG 59.411 42.308 9.78 4.00 44.58 1.31
3360 5097 6.626623 GCACAGTATCCTTTCTTCAATGCAAT 60.627 38.462 0.00 0.00 0.00 3.56
3367 5104 5.046376 TCTCATGCACAGTATCCTTTCTTCA 60.046 40.000 0.00 0.00 0.00 3.02
3375 5112 2.893637 ACGTTCTCATGCACAGTATCC 58.106 47.619 0.00 0.00 0.00 2.59
3380 5122 3.002656 ACAAGAAACGTTCTCATGCACAG 59.997 43.478 0.00 0.00 39.61 3.66
3593 5335 0.529378 CCAAGGCATTCTGGCAACTC 59.471 55.000 3.43 0.00 46.46 3.01
3691 5434 7.504924 AGAATTGTTTTCCAAAGTCGTGATA 57.495 32.000 0.00 0.00 36.44 2.15
3700 5443 7.308469 GCCATTGCATAAGAATTGTTTTCCAAA 60.308 33.333 0.00 0.00 35.31 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.