Multiple sequence alignment - TraesCS5A01G454800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G454800 chr5A 100.000 2789 0 0 1 2789 635591456 635588668 0.000000e+00 5151.0
1 TraesCS5A01G454800 chr5A 86.061 165 19 3 451 615 486981768 486981928 1.030000e-39 174.0
2 TraesCS5A01G454800 chr3B 87.633 1876 154 21 950 2789 170828735 170830568 0.000000e+00 2108.0
3 TraesCS5A01G454800 chr3B 87.421 159 18 2 458 615 828935056 828935213 6.140000e-42 182.0
4 TraesCS5A01G454800 chr3B 89.831 59 5 1 2556 2614 170831086 170831143 1.070000e-09 75.0
5 TraesCS5A01G454800 chr5B 92.587 1376 78 6 950 2308 639120493 639121861 0.000000e+00 1954.0
6 TraesCS5A01G454800 chr5B 84.232 482 27 5 2357 2789 639121863 639122344 9.230000e-115 424.0
7 TraesCS5A01G454800 chr5B 86.420 162 19 2 454 615 27907262 27907104 1.030000e-39 174.0
8 TraesCS5A01G454800 chr5B 97.826 46 1 0 882 927 639120406 639120451 2.300000e-11 80.5
9 TraesCS5A01G454800 chr5D 91.404 1268 84 7 1150 2398 368613363 368614624 0.000000e+00 1714.0
10 TraesCS5A01G454800 chr5D 88.552 725 64 4 1 725 368587011 368587716 0.000000e+00 861.0
11 TraesCS5A01G454800 chr5D 76.080 1597 279 59 989 2525 368626776 368625223 0.000000e+00 737.0
12 TraesCS5A01G454800 chr5D 75.791 1012 208 23 989 1975 508183754 508182755 6.990000e-131 477.0
13 TraesCS5A01G454800 chr5D 88.949 371 12 3 768 1114 368612996 368613361 5.520000e-117 431.0
14 TraesCS5A01G454800 chr5D 76.364 880 160 33 1541 2404 508523788 508524635 1.980000e-116 429.0
15 TraesCS5A01G454800 chr5D 85.302 381 21 7 2437 2787 368614626 368615001 7.340000e-96 361.0
16 TraesCS5A01G454800 chr5D 82.353 425 61 7 1008 1425 508518123 508518540 9.500000e-95 357.0
17 TraesCS5A01G454800 chrUn 87.117 163 18 3 454 615 354435709 354435869 6.140000e-42 182.0
18 TraesCS5A01G454800 chrUn 87.117 163 18 3 454 615 449403633 449403793 6.140000e-42 182.0
19 TraesCS5A01G454800 chr2A 86.061 165 21 2 454 617 197420142 197419979 2.860000e-40 176.0
20 TraesCS5A01G454800 chr7D 86.420 162 19 2 454 615 49806752 49806594 1.030000e-39 174.0
21 TraesCS5A01G454800 chr6D 86.420 162 19 2 454 615 318456723 318456881 1.030000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G454800 chr5A 635588668 635591456 2788 True 5151.000000 5151 100.000000 1 2789 1 chr5A.!!$R1 2788
1 TraesCS5A01G454800 chr3B 170828735 170831143 2408 False 1091.500000 2108 88.732000 950 2789 2 chr3B.!!$F2 1839
2 TraesCS5A01G454800 chr5B 639120406 639122344 1938 False 819.500000 1954 91.548333 882 2789 3 chr5B.!!$F1 1907
3 TraesCS5A01G454800 chr5D 368587011 368587716 705 False 861.000000 861 88.552000 1 725 1 chr5D.!!$F1 724
4 TraesCS5A01G454800 chr5D 368612996 368615001 2005 False 835.333333 1714 88.551667 768 2787 3 chr5D.!!$F4 2019
5 TraesCS5A01G454800 chr5D 368625223 368626776 1553 True 737.000000 737 76.080000 989 2525 1 chr5D.!!$R1 1536
6 TraesCS5A01G454800 chr5D 508182755 508183754 999 True 477.000000 477 75.791000 989 1975 1 chr5D.!!$R2 986
7 TraesCS5A01G454800 chr5D 508523788 508524635 847 False 429.000000 429 76.364000 1541 2404 1 chr5D.!!$F3 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 606 0.025001 GCGCTTGCGTATGTACTGTG 59.975 55.0 16.38 0.0 0.00 3.66 F
758 759 0.104725 GAGGACCCATGGAGGAGGAT 60.105 60.0 15.22 0.0 41.22 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1606 0.246635 GCTGAAGTGGAGGAGCGTAA 59.753 55.0 0.0 0.0 0.0 3.18 R
2129 2237 0.391661 CTGACCACCCACATCTTCCG 60.392 60.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.257602 TGTGTATGGGATGCTTTATACTTCTA 57.742 34.615 0.00 0.00 0.00 2.10
130 131 8.395605 AGTTTGGTAAATTATAAGTGAAGGGGA 58.604 33.333 0.00 0.00 0.00 4.81
132 133 7.273457 TGGTAAATTATAAGTGAAGGGGACA 57.727 36.000 0.00 0.00 0.00 4.02
140 141 2.153401 TGAAGGGGACAGGTGGTGG 61.153 63.158 0.00 0.00 0.00 4.61
141 142 2.858974 AAGGGGACAGGTGGTGGG 60.859 66.667 0.00 0.00 0.00 4.61
148 149 3.996621 CAGGTGGTGGGGGCCAAT 61.997 66.667 4.39 0.00 40.68 3.16
149 150 2.204385 AGGTGGTGGGGGCCAATA 60.204 61.111 4.39 0.00 40.68 1.90
150 151 2.043349 GGTGGTGGGGGCCAATAC 60.043 66.667 4.39 0.00 40.68 1.89
151 152 2.043349 GTGGTGGGGGCCAATACC 60.043 66.667 4.39 11.03 40.68 2.73
152 153 2.204385 TGGTGGGGGCCAATACCT 60.204 61.111 19.53 0.00 34.18 3.08
153 154 2.313427 TGGTGGGGGCCAATACCTC 61.313 63.158 19.53 9.82 34.18 3.85
154 155 2.313427 GGTGGGGGCCAATACCTCA 61.313 63.158 4.39 0.00 35.72 3.86
155 156 1.694856 GTGGGGGCCAATACCTCAA 59.305 57.895 4.39 0.00 40.91 3.02
156 157 0.395724 GTGGGGGCCAATACCTCAAG 60.396 60.000 4.39 0.00 40.91 3.02
157 158 0.551377 TGGGGGCCAATACCTCAAGA 60.551 55.000 4.39 0.00 34.98 3.02
158 159 0.629058 GGGGGCCAATACCTCAAGAA 59.371 55.000 4.39 0.00 0.00 2.52
159 160 1.006639 GGGGGCCAATACCTCAAGAAA 59.993 52.381 4.39 0.00 0.00 2.52
160 161 2.558800 GGGGGCCAATACCTCAAGAAAA 60.559 50.000 4.39 0.00 0.00 2.29
161 162 2.760650 GGGGCCAATACCTCAAGAAAAG 59.239 50.000 4.39 0.00 0.00 2.27
162 163 2.760650 GGGCCAATACCTCAAGAAAAGG 59.239 50.000 4.39 0.00 39.96 3.11
163 164 3.563479 GGGCCAATACCTCAAGAAAAGGA 60.563 47.826 4.39 0.00 37.35 3.36
164 165 3.696548 GGCCAATACCTCAAGAAAAGGAG 59.303 47.826 0.00 0.00 37.35 3.69
168 169 3.272925 CCTCAAGAAAAGGAGGGGC 57.727 57.895 0.00 0.00 45.62 5.80
169 170 0.678048 CCTCAAGAAAAGGAGGGGCG 60.678 60.000 0.00 0.00 45.62 6.13
170 171 0.324943 CTCAAGAAAAGGAGGGGCGA 59.675 55.000 0.00 0.00 0.00 5.54
171 172 0.768622 TCAAGAAAAGGAGGGGCGAA 59.231 50.000 0.00 0.00 0.00 4.70
172 173 1.354368 TCAAGAAAAGGAGGGGCGAAT 59.646 47.619 0.00 0.00 0.00 3.34
173 174 1.745653 CAAGAAAAGGAGGGGCGAATC 59.254 52.381 0.00 0.00 0.00 2.52
174 175 0.107654 AGAAAAGGAGGGGCGAATCG 60.108 55.000 0.00 0.00 0.00 3.34
175 176 1.077716 AAAAGGAGGGGCGAATCGG 60.078 57.895 4.35 0.00 0.00 4.18
176 177 2.552231 AAAAGGAGGGGCGAATCGGG 62.552 60.000 4.35 0.00 0.00 5.14
177 178 3.995809 AAGGAGGGGCGAATCGGGA 62.996 63.158 4.35 0.00 0.00 5.14
178 179 3.930012 GGAGGGGCGAATCGGGAG 61.930 72.222 4.35 0.00 0.00 4.30
179 180 2.838225 GAGGGGCGAATCGGGAGA 60.838 66.667 4.35 0.00 46.90 3.71
180 181 2.365105 AGGGGCGAATCGGGAGAA 60.365 61.111 4.35 0.00 45.37 2.87
181 182 1.968050 GAGGGGCGAATCGGGAGAAA 61.968 60.000 4.35 0.00 45.37 2.52
182 183 1.818363 GGGGCGAATCGGGAGAAAC 60.818 63.158 4.35 0.00 45.37 2.78
183 184 1.818363 GGGCGAATCGGGAGAAACC 60.818 63.158 4.35 0.00 45.37 3.27
184 185 1.078708 GGCGAATCGGGAGAAACCA 60.079 57.895 4.35 0.00 45.37 3.67
185 186 1.366854 GGCGAATCGGGAGAAACCAC 61.367 60.000 4.35 0.00 45.37 4.16
186 187 1.693083 GCGAATCGGGAGAAACCACG 61.693 60.000 4.35 0.00 45.37 4.94
187 188 0.108992 CGAATCGGGAGAAACCACGA 60.109 55.000 0.00 0.00 45.37 4.35
188 189 1.356938 GAATCGGGAGAAACCACGAC 58.643 55.000 0.00 0.00 45.37 4.34
189 190 0.036671 AATCGGGAGAAACCACGACC 60.037 55.000 0.00 0.00 45.37 4.79
190 191 1.189524 ATCGGGAGAAACCACGACCA 61.190 55.000 0.00 0.00 45.37 4.02
191 192 1.666872 CGGGAGAAACCACGACCAC 60.667 63.158 0.00 0.00 41.20 4.16
192 193 1.448497 GGGAGAAACCACGACCACA 59.552 57.895 0.00 0.00 41.20 4.17
193 194 0.036306 GGGAGAAACCACGACCACAT 59.964 55.000 0.00 0.00 41.20 3.21
194 195 1.544759 GGGAGAAACCACGACCACATT 60.545 52.381 0.00 0.00 41.20 2.71
195 196 2.289819 GGGAGAAACCACGACCACATTA 60.290 50.000 0.00 0.00 41.20 1.90
196 197 3.606687 GGAGAAACCACGACCACATTAT 58.393 45.455 0.00 0.00 38.79 1.28
197 198 3.621715 GGAGAAACCACGACCACATTATC 59.378 47.826 0.00 0.00 38.79 1.75
198 199 4.504858 GAGAAACCACGACCACATTATCT 58.495 43.478 0.00 0.00 0.00 1.98
199 200 5.394883 GGAGAAACCACGACCACATTATCTA 60.395 44.000 0.00 0.00 38.79 1.98
200 201 6.235231 AGAAACCACGACCACATTATCTAT 57.765 37.500 0.00 0.00 0.00 1.98
201 202 6.281405 AGAAACCACGACCACATTATCTATC 58.719 40.000 0.00 0.00 0.00 2.08
202 203 4.238761 ACCACGACCACATTATCTATCG 57.761 45.455 0.00 0.00 35.74 2.92
203 204 3.887110 ACCACGACCACATTATCTATCGA 59.113 43.478 0.00 0.00 33.88 3.59
204 205 4.023107 ACCACGACCACATTATCTATCGAG 60.023 45.833 0.00 0.00 33.88 4.04
205 206 3.914966 CACGACCACATTATCTATCGAGC 59.085 47.826 0.00 0.00 33.88 5.03
206 207 3.821600 ACGACCACATTATCTATCGAGCT 59.178 43.478 0.00 0.00 33.88 4.09
207 208 5.001874 ACGACCACATTATCTATCGAGCTA 58.998 41.667 0.00 0.00 33.88 3.32
208 209 5.472478 ACGACCACATTATCTATCGAGCTAA 59.528 40.000 0.00 0.00 33.88 3.09
209 210 6.016527 ACGACCACATTATCTATCGAGCTAAA 60.017 38.462 0.00 0.00 33.88 1.85
210 211 6.861572 CGACCACATTATCTATCGAGCTAAAA 59.138 38.462 0.00 0.00 0.00 1.52
211 212 7.542477 CGACCACATTATCTATCGAGCTAAAAT 59.458 37.037 0.00 0.00 0.00 1.82
212 213 9.856488 GACCACATTATCTATCGAGCTAAAATA 57.144 33.333 0.00 0.00 0.00 1.40
213 214 9.862371 ACCACATTATCTATCGAGCTAAAATAG 57.138 33.333 0.00 0.00 0.00 1.73
222 223 9.386010 TCTATCGAGCTAAAATAGATCTAGACC 57.614 37.037 8.70 0.00 38.99 3.85
223 224 6.483385 TCGAGCTAAAATAGATCTAGACCG 57.517 41.667 8.70 3.67 38.99 4.79
224 225 5.090083 CGAGCTAAAATAGATCTAGACCGC 58.910 45.833 8.70 7.07 38.99 5.68
225 226 5.394224 AGCTAAAATAGATCTAGACCGCC 57.606 43.478 8.70 0.00 0.00 6.13
226 227 4.833380 AGCTAAAATAGATCTAGACCGCCA 59.167 41.667 8.70 0.00 0.00 5.69
227 228 5.047660 AGCTAAAATAGATCTAGACCGCCAG 60.048 44.000 8.70 0.84 0.00 4.85
228 229 3.669251 AAATAGATCTAGACCGCCAGC 57.331 47.619 8.70 0.00 0.00 4.85
229 230 2.294449 ATAGATCTAGACCGCCAGCA 57.706 50.000 8.70 0.00 0.00 4.41
230 231 1.610363 TAGATCTAGACCGCCAGCAG 58.390 55.000 0.00 0.00 0.00 4.24
231 232 0.396417 AGATCTAGACCGCCAGCAGT 60.396 55.000 0.00 0.00 0.00 4.40
232 233 0.031449 GATCTAGACCGCCAGCAGTC 59.969 60.000 0.00 0.00 0.00 3.51
233 234 1.729470 ATCTAGACCGCCAGCAGTCG 61.729 60.000 0.00 0.00 38.08 4.18
234 235 2.360726 TAGACCGCCAGCAGTCGA 60.361 61.111 0.56 0.00 38.08 4.20
235 236 2.600122 CTAGACCGCCAGCAGTCGAC 62.600 65.000 7.70 7.70 38.08 4.20
236 237 4.357947 GACCGCCAGCAGTCGACA 62.358 66.667 19.50 0.00 0.00 4.35
237 238 3.858868 GACCGCCAGCAGTCGACAA 62.859 63.158 19.50 0.00 0.00 3.18
238 239 2.664851 CCGCCAGCAGTCGACAAA 60.665 61.111 19.50 0.00 0.00 2.83
239 240 2.250939 CCGCCAGCAGTCGACAAAA 61.251 57.895 19.50 0.00 0.00 2.44
240 241 1.082756 CGCCAGCAGTCGACAAAAC 60.083 57.895 19.50 3.64 0.00 2.43
241 242 1.282875 GCCAGCAGTCGACAAAACC 59.717 57.895 19.50 0.62 0.00 3.27
242 243 1.444119 GCCAGCAGTCGACAAAACCA 61.444 55.000 19.50 0.00 0.00 3.67
243 244 0.307760 CCAGCAGTCGACAAAACCAC 59.692 55.000 19.50 0.00 0.00 4.16
244 245 1.013596 CAGCAGTCGACAAAACCACA 58.986 50.000 19.50 0.00 0.00 4.17
245 246 1.603802 CAGCAGTCGACAAAACCACAT 59.396 47.619 19.50 0.00 0.00 3.21
246 247 1.873591 AGCAGTCGACAAAACCACATC 59.126 47.619 19.50 0.00 0.00 3.06
247 248 1.601903 GCAGTCGACAAAACCACATCA 59.398 47.619 19.50 0.00 0.00 3.07
248 249 2.032799 GCAGTCGACAAAACCACATCAA 59.967 45.455 19.50 0.00 0.00 2.57
249 250 3.617669 CAGTCGACAAAACCACATCAAC 58.382 45.455 19.50 0.00 0.00 3.18
250 251 3.064682 CAGTCGACAAAACCACATCAACA 59.935 43.478 19.50 0.00 0.00 3.33
251 252 3.692101 AGTCGACAAAACCACATCAACAA 59.308 39.130 19.50 0.00 0.00 2.83
252 253 4.156922 AGTCGACAAAACCACATCAACAAA 59.843 37.500 19.50 0.00 0.00 2.83
253 254 4.499040 GTCGACAAAACCACATCAACAAAG 59.501 41.667 11.55 0.00 0.00 2.77
254 255 3.242712 CGACAAAACCACATCAACAAAGC 59.757 43.478 0.00 0.00 0.00 3.51
255 256 3.186119 ACAAAACCACATCAACAAAGCG 58.814 40.909 0.00 0.00 0.00 4.68
256 257 3.186119 CAAAACCACATCAACAAAGCGT 58.814 40.909 0.00 0.00 0.00 5.07
257 258 4.142359 ACAAAACCACATCAACAAAGCGTA 60.142 37.500 0.00 0.00 0.00 4.42
258 259 3.896648 AACCACATCAACAAAGCGTAG 57.103 42.857 0.00 0.00 0.00 3.51
274 275 2.009774 CGTAGCCATGAGGAAACAAGG 58.990 52.381 0.00 0.00 36.89 3.61
276 277 1.893062 GCCATGAGGAAACAAGGCC 59.107 57.895 0.00 0.00 45.24 5.19
277 278 1.607801 GCCATGAGGAAACAAGGCCC 61.608 60.000 0.00 0.00 45.24 5.80
278 279 0.251742 CCATGAGGAAACAAGGCCCA 60.252 55.000 0.00 0.00 36.89 5.36
279 280 1.620524 CCATGAGGAAACAAGGCCCAT 60.621 52.381 0.00 0.00 36.89 4.00
280 281 1.479323 CATGAGGAAACAAGGCCCATG 59.521 52.381 0.00 0.76 31.41 3.66
281 282 0.251742 TGAGGAAACAAGGCCCATGG 60.252 55.000 4.14 4.14 0.00 3.66
282 283 0.039618 GAGGAAACAAGGCCCATGGA 59.960 55.000 15.22 0.00 0.00 3.41
283 284 0.040204 AGGAAACAAGGCCCATGGAG 59.960 55.000 15.22 4.39 0.00 3.86
284 285 0.972471 GGAAACAAGGCCCATGGAGG 60.972 60.000 15.22 0.00 37.03 4.30
291 292 2.123726 GCCCATGGAGGCGGAAAT 60.124 61.111 15.22 0.00 44.57 2.17
292 293 2.196245 GCCCATGGAGGCGGAAATC 61.196 63.158 15.22 0.00 44.57 2.17
293 294 1.529244 CCCATGGAGGCGGAAATCC 60.529 63.158 15.22 0.00 35.39 3.01
298 299 0.472471 TGGAGGCGGAAATCCATACC 59.528 55.000 0.00 0.00 40.70 2.73
299 300 0.765510 GGAGGCGGAAATCCATACCT 59.234 55.000 5.59 5.59 36.51 3.08
300 301 1.270893 GGAGGCGGAAATCCATACCTC 60.271 57.143 18.32 18.32 43.84 3.85
301 302 1.416401 GAGGCGGAAATCCATACCTCA 59.584 52.381 20.29 0.00 43.93 3.86
302 303 1.843851 AGGCGGAAATCCATACCTCAA 59.156 47.619 0.00 0.00 35.14 3.02
303 304 2.241176 AGGCGGAAATCCATACCTCAAA 59.759 45.455 0.00 0.00 35.14 2.69
304 305 3.020984 GGCGGAAATCCATACCTCAAAA 58.979 45.455 0.00 0.00 35.14 2.44
305 306 3.445805 GGCGGAAATCCATACCTCAAAAA 59.554 43.478 0.00 0.00 35.14 1.94
323 324 4.551702 AAAAATGGGAAAGGGGAAATCG 57.448 40.909 0.00 0.00 0.00 3.34
324 325 2.159179 AATGGGAAAGGGGAAATCGG 57.841 50.000 0.00 0.00 0.00 4.18
325 326 1.304891 ATGGGAAAGGGGAAATCGGA 58.695 50.000 0.00 0.00 0.00 4.55
326 327 0.623723 TGGGAAAGGGGAAATCGGAG 59.376 55.000 0.00 0.00 0.00 4.63
327 328 0.916809 GGGAAAGGGGAAATCGGAGA 59.083 55.000 0.00 0.00 45.75 3.71
328 329 1.283905 GGGAAAGGGGAAATCGGAGAA 59.716 52.381 0.00 0.00 43.58 2.87
329 330 2.291346 GGGAAAGGGGAAATCGGAGAAA 60.291 50.000 0.00 0.00 43.58 2.52
330 331 2.753452 GGAAAGGGGAAATCGGAGAAAC 59.247 50.000 0.00 0.00 43.58 2.78
331 332 2.509166 AAGGGGAAATCGGAGAAACC 57.491 50.000 0.00 0.00 43.58 3.27
332 333 1.368374 AGGGGAAATCGGAGAAACCA 58.632 50.000 0.00 0.00 43.58 3.67
333 334 1.282157 AGGGGAAATCGGAGAAACCAG 59.718 52.381 0.00 0.00 43.58 4.00
334 335 1.095600 GGGAAATCGGAGAAACCAGC 58.904 55.000 0.00 0.00 43.58 4.85
335 336 1.613255 GGGAAATCGGAGAAACCAGCA 60.613 52.381 0.00 0.00 43.58 4.41
336 337 1.468914 GGAAATCGGAGAAACCAGCAC 59.531 52.381 0.00 0.00 43.58 4.40
337 338 2.151202 GAAATCGGAGAAACCAGCACA 58.849 47.619 0.00 0.00 43.58 4.57
338 339 2.270352 AATCGGAGAAACCAGCACAA 57.730 45.000 0.00 0.00 43.58 3.33
339 340 1.523758 ATCGGAGAAACCAGCACAAC 58.476 50.000 0.00 0.00 43.58 3.32
340 341 0.179234 TCGGAGAAACCAGCACAACA 59.821 50.000 0.00 0.00 38.90 3.33
341 342 1.202758 TCGGAGAAACCAGCACAACAT 60.203 47.619 0.00 0.00 38.90 2.71
342 343 1.069022 CGGAGAAACCAGCACAACATG 60.069 52.381 0.00 0.00 38.90 3.21
343 344 2.229792 GGAGAAACCAGCACAACATGA 58.770 47.619 0.00 0.00 38.79 3.07
344 345 2.821969 GGAGAAACCAGCACAACATGAT 59.178 45.455 0.00 0.00 38.79 2.45
345 346 3.256631 GGAGAAACCAGCACAACATGATT 59.743 43.478 0.00 0.00 38.79 2.57
346 347 4.232221 GAGAAACCAGCACAACATGATTG 58.768 43.478 0.00 3.00 0.00 2.67
347 348 2.443887 AACCAGCACAACATGATTGC 57.556 45.000 0.00 4.71 36.45 3.56
348 349 1.330234 ACCAGCACAACATGATTGCA 58.670 45.000 16.49 0.00 38.81 4.08
349 350 1.897133 ACCAGCACAACATGATTGCAT 59.103 42.857 16.49 3.43 38.81 3.96
350 351 2.300723 ACCAGCACAACATGATTGCATT 59.699 40.909 16.49 0.00 38.81 3.56
351 352 3.510753 ACCAGCACAACATGATTGCATTA 59.489 39.130 16.49 0.00 38.81 1.90
352 353 4.160814 ACCAGCACAACATGATTGCATTAT 59.839 37.500 16.49 0.00 38.81 1.28
353 354 5.113383 CCAGCACAACATGATTGCATTATT 58.887 37.500 16.49 0.00 38.81 1.40
354 355 5.583061 CCAGCACAACATGATTGCATTATTT 59.417 36.000 16.49 0.00 38.81 1.40
355 356 6.456315 CCAGCACAACATGATTGCATTATTTG 60.456 38.462 16.49 7.66 38.81 2.32
356 357 6.091577 CAGCACAACATGATTGCATTATTTGT 59.908 34.615 16.49 3.67 38.81 2.83
357 358 6.311935 AGCACAACATGATTGCATTATTTGTC 59.688 34.615 16.49 2.29 38.81 3.18
358 359 6.311935 GCACAACATGATTGCATTATTTGTCT 59.688 34.615 0.00 0.00 36.22 3.41
359 360 7.148540 GCACAACATGATTGCATTATTTGTCTT 60.149 33.333 0.00 0.00 36.22 3.01
360 361 8.377681 CACAACATGATTGCATTATTTGTCTTC 58.622 33.333 0.00 0.00 31.73 2.87
361 362 8.308931 ACAACATGATTGCATTATTTGTCTTCT 58.691 29.630 0.00 0.00 29.72 2.85
362 363 8.804743 CAACATGATTGCATTATTTGTCTTCTC 58.195 33.333 0.00 0.00 30.68 2.87
363 364 8.289939 ACATGATTGCATTATTTGTCTTCTCT 57.710 30.769 0.00 0.00 30.68 3.10
364 365 8.746530 ACATGATTGCATTATTTGTCTTCTCTT 58.253 29.630 0.00 0.00 30.68 2.85
365 366 9.582431 CATGATTGCATTATTTGTCTTCTCTTT 57.418 29.630 0.00 0.00 30.68 2.52
367 368 9.985730 TGATTGCATTATTTGTCTTCTCTTTTT 57.014 25.926 0.00 0.00 0.00 1.94
393 394 6.963796 AGCACAACTGCATTATTTATCTAGC 58.036 36.000 0.00 0.00 46.97 3.42
394 395 6.769822 AGCACAACTGCATTATTTATCTAGCT 59.230 34.615 0.00 0.00 46.97 3.32
395 396 7.284034 AGCACAACTGCATTATTTATCTAGCTT 59.716 33.333 0.00 0.00 46.97 3.74
396 397 8.559536 GCACAACTGCATTATTTATCTAGCTTA 58.440 33.333 0.00 0.00 43.62 3.09
430 431 3.106407 GCCAGACGACACGAGCAC 61.106 66.667 0.00 0.00 0.00 4.40
431 432 2.801162 CCAGACGACACGAGCACG 60.801 66.667 0.76 0.76 45.75 5.34
444 445 2.846039 GAGCACGTCGAGAGGAATAA 57.154 50.000 0.00 0.00 0.00 1.40
445 446 2.452105 GAGCACGTCGAGAGGAATAAC 58.548 52.381 0.00 0.00 0.00 1.89
446 447 1.134560 AGCACGTCGAGAGGAATAACC 59.865 52.381 0.00 0.00 39.35 2.85
447 448 1.135199 GCACGTCGAGAGGAATAACCA 60.135 52.381 0.00 0.00 42.04 3.67
448 449 2.481449 GCACGTCGAGAGGAATAACCAT 60.481 50.000 0.00 0.00 42.04 3.55
449 450 3.782046 CACGTCGAGAGGAATAACCATT 58.218 45.455 0.00 0.00 42.04 3.16
450 451 4.181578 CACGTCGAGAGGAATAACCATTT 58.818 43.478 0.00 0.00 42.04 2.32
451 452 4.267928 CACGTCGAGAGGAATAACCATTTC 59.732 45.833 0.00 0.00 42.04 2.17
452 453 4.081862 ACGTCGAGAGGAATAACCATTTCA 60.082 41.667 0.00 0.00 42.04 2.69
453 454 4.504461 CGTCGAGAGGAATAACCATTTCAG 59.496 45.833 0.00 0.00 42.04 3.02
454 455 5.661458 GTCGAGAGGAATAACCATTTCAGA 58.339 41.667 0.00 0.00 42.04 3.27
455 456 5.520649 GTCGAGAGGAATAACCATTTCAGAC 59.479 44.000 0.00 0.00 42.04 3.51
456 457 5.186992 TCGAGAGGAATAACCATTTCAGACA 59.813 40.000 0.00 0.00 42.04 3.41
457 458 5.874810 CGAGAGGAATAACCATTTCAGACAA 59.125 40.000 0.00 0.00 42.04 3.18
458 459 6.183360 CGAGAGGAATAACCATTTCAGACAAC 60.183 42.308 0.00 0.00 42.04 3.32
459 460 5.643777 AGAGGAATAACCATTTCAGACAACG 59.356 40.000 0.00 0.00 42.04 4.10
460 461 5.556915 AGGAATAACCATTTCAGACAACGA 58.443 37.500 0.00 0.00 42.04 3.85
461 462 5.643777 AGGAATAACCATTTCAGACAACGAG 59.356 40.000 0.00 0.00 42.04 4.18
462 463 5.163754 GGAATAACCATTTCAGACAACGAGG 60.164 44.000 0.00 0.00 38.79 4.63
463 464 1.523758 ACCATTTCAGACAACGAGGC 58.476 50.000 0.00 0.00 0.00 4.70
464 465 0.443869 CCATTTCAGACAACGAGGCG 59.556 55.000 0.00 0.00 0.00 5.52
465 466 0.179215 CATTTCAGACAACGAGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
466 467 1.298859 ATTTCAGACAACGAGGCGCC 61.299 55.000 21.89 21.89 0.00 6.53
467 468 2.377628 TTTCAGACAACGAGGCGCCT 62.378 55.000 33.48 33.48 0.00 5.52
468 469 1.529152 TTCAGACAACGAGGCGCCTA 61.529 55.000 32.97 7.45 0.00 3.93
469 470 1.080093 CAGACAACGAGGCGCCTAA 60.080 57.895 32.97 0.00 0.00 2.69
470 471 1.078759 CAGACAACGAGGCGCCTAAG 61.079 60.000 32.97 28.01 0.00 2.18
471 472 1.810030 GACAACGAGGCGCCTAAGG 60.810 63.158 32.97 23.67 0.00 2.69
472 473 2.264794 CAACGAGGCGCCTAAGGT 59.735 61.111 32.97 24.39 0.00 3.50
473 474 2.100631 CAACGAGGCGCCTAAGGTG 61.101 63.158 32.97 29.89 36.10 4.00
474 475 2.280552 AACGAGGCGCCTAAGGTGA 61.281 57.895 32.97 0.00 34.74 4.02
475 476 1.614241 AACGAGGCGCCTAAGGTGAT 61.614 55.000 32.97 10.91 34.74 3.06
476 477 1.144057 CGAGGCGCCTAAGGTGATT 59.856 57.895 32.97 3.02 34.74 2.57
477 478 0.462047 CGAGGCGCCTAAGGTGATTT 60.462 55.000 32.97 2.04 34.74 2.17
478 479 1.751437 GAGGCGCCTAAGGTGATTTT 58.249 50.000 32.97 1.35 34.74 1.82
479 480 1.401905 GAGGCGCCTAAGGTGATTTTG 59.598 52.381 32.97 0.00 34.74 2.44
480 481 1.173913 GGCGCCTAAGGTGATTTTGT 58.826 50.000 22.15 0.00 34.74 2.83
481 482 2.026636 AGGCGCCTAAGGTGATTTTGTA 60.027 45.455 31.86 0.00 34.74 2.41
482 483 2.750712 GGCGCCTAAGGTGATTTTGTAA 59.249 45.455 22.15 0.00 34.74 2.41
483 484 3.191791 GGCGCCTAAGGTGATTTTGTAAA 59.808 43.478 22.15 0.00 34.74 2.01
484 485 4.321378 GGCGCCTAAGGTGATTTTGTAAAA 60.321 41.667 22.15 0.00 34.74 1.52
485 486 5.407502 GCGCCTAAGGTGATTTTGTAAAAT 58.592 37.500 0.00 2.43 41.06 1.82
486 487 5.867174 GCGCCTAAGGTGATTTTGTAAAATT 59.133 36.000 0.00 0.00 38.64 1.82
487 488 6.367695 GCGCCTAAGGTGATTTTGTAAAATTT 59.632 34.615 0.00 0.00 38.64 1.82
488 489 7.411480 GCGCCTAAGGTGATTTTGTAAAATTTC 60.411 37.037 0.00 1.95 38.64 2.17
489 490 7.596995 CGCCTAAGGTGATTTTGTAAAATTTCA 59.403 33.333 4.27 0.00 38.64 2.69
490 491 9.267084 GCCTAAGGTGATTTTGTAAAATTTCAA 57.733 29.630 4.27 0.00 38.64 2.69
502 503 8.854979 TTGTAAAATTTCAAGATGATATGCCG 57.145 30.769 0.00 0.00 0.00 5.69
503 504 7.424803 TGTAAAATTTCAAGATGATATGCCGG 58.575 34.615 0.00 0.00 0.00 6.13
504 505 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
505 506 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
506 507 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
507 508 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
508 509 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
509 510 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
510 511 1.696336 AGATGATATGCCGGCTCAGTT 59.304 47.619 29.70 9.04 0.00 3.16
511 512 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
512 513 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
513 514 2.722094 TGATATGCCGGCTCAGTTTTT 58.278 42.857 29.70 3.35 0.00 1.94
535 536 8.924511 TTTTTAAAGATGCTCATAGGGATAGG 57.075 34.615 0.00 0.00 0.00 2.57
536 537 6.627087 TTAAAGATGCTCATAGGGATAGGG 57.373 41.667 0.00 0.00 0.00 3.53
537 538 3.862600 AGATGCTCATAGGGATAGGGT 57.137 47.619 0.00 0.00 0.00 4.34
538 539 3.448934 AGATGCTCATAGGGATAGGGTG 58.551 50.000 0.00 0.00 0.00 4.61
539 540 2.795291 TGCTCATAGGGATAGGGTGT 57.205 50.000 0.00 0.00 0.00 4.16
540 541 2.329267 TGCTCATAGGGATAGGGTGTG 58.671 52.381 0.00 0.00 0.00 3.82
541 542 2.330216 GCTCATAGGGATAGGGTGTGT 58.670 52.381 0.00 0.00 0.00 3.72
542 543 2.037772 GCTCATAGGGATAGGGTGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
543 544 3.309296 CTCATAGGGATAGGGTGTGTGT 58.691 50.000 0.00 0.00 0.00 3.72
544 545 3.038280 TCATAGGGATAGGGTGTGTGTG 58.962 50.000 0.00 0.00 0.00 3.82
545 546 1.200519 TAGGGATAGGGTGTGTGTGC 58.799 55.000 0.00 0.00 0.00 4.57
546 547 0.840288 AGGGATAGGGTGTGTGTGCA 60.840 55.000 0.00 0.00 0.00 4.57
547 548 0.676782 GGGATAGGGTGTGTGTGCAC 60.677 60.000 10.75 10.75 45.44 4.57
557 558 4.368808 GTGTGCACGCGCGTTCAT 62.369 61.111 35.32 12.15 42.97 2.57
558 559 2.735100 TGTGCACGCGCGTTCATA 60.735 55.556 35.32 30.43 42.97 2.15
559 560 2.020016 GTGCACGCGCGTTCATAG 59.980 61.111 35.32 23.90 42.97 2.23
560 561 2.126267 TGCACGCGCGTTCATAGA 60.126 55.556 35.90 9.86 42.97 1.98
561 562 2.158330 TGCACGCGCGTTCATAGAG 61.158 57.895 35.90 21.28 42.97 2.43
562 563 2.860628 GCACGCGCGTTCATAGAGG 61.861 63.158 35.90 20.47 0.00 3.69
563 564 1.226575 CACGCGCGTTCATAGAGGA 60.227 57.895 35.90 0.00 0.00 3.71
564 565 1.064296 ACGCGCGTTCATAGAGGAG 59.936 57.895 32.73 0.00 0.00 3.69
565 566 1.355563 CGCGCGTTCATAGAGGAGA 59.644 57.895 24.19 0.00 0.00 3.71
566 567 0.658829 CGCGCGTTCATAGAGGAGAG 60.659 60.000 24.19 0.00 0.00 3.20
567 568 0.382515 GCGCGTTCATAGAGGAGAGT 59.617 55.000 8.43 0.00 0.00 3.24
568 569 1.862008 GCGCGTTCATAGAGGAGAGTG 60.862 57.143 8.43 0.00 0.00 3.51
569 570 1.402259 CGCGTTCATAGAGGAGAGTGT 59.598 52.381 0.00 0.00 0.00 3.55
570 571 2.612672 CGCGTTCATAGAGGAGAGTGTA 59.387 50.000 0.00 0.00 0.00 2.90
571 572 3.251245 CGCGTTCATAGAGGAGAGTGTAT 59.749 47.826 0.00 0.00 0.00 2.29
572 573 4.541779 GCGTTCATAGAGGAGAGTGTATG 58.458 47.826 0.00 0.00 0.00 2.39
573 574 4.541779 CGTTCATAGAGGAGAGTGTATGC 58.458 47.826 0.00 0.00 0.00 3.14
574 575 4.036852 CGTTCATAGAGGAGAGTGTATGCA 59.963 45.833 0.00 0.00 0.00 3.96
575 576 5.285651 GTTCATAGAGGAGAGTGTATGCAC 58.714 45.833 5.71 5.71 45.57 4.57
588 589 5.606335 GTGTATGCACGTATATATGAGCG 57.394 43.478 16.43 4.78 35.75 5.03
589 590 4.027621 GTGTATGCACGTATATATGAGCGC 60.028 45.833 16.43 0.00 35.75 5.92
590 591 3.510388 ATGCACGTATATATGAGCGCT 57.490 42.857 11.27 11.27 32.51 5.92
591 592 3.297830 TGCACGTATATATGAGCGCTT 57.702 42.857 13.26 0.00 32.51 4.68
592 593 2.986479 TGCACGTATATATGAGCGCTTG 59.014 45.455 13.26 2.09 32.51 4.01
593 594 2.222596 GCACGTATATATGAGCGCTTGC 60.223 50.000 13.26 9.78 39.58 4.01
594 595 2.026860 CACGTATATATGAGCGCTTGCG 59.973 50.000 13.26 12.73 45.69 4.85
595 596 2.251040 CGTATATATGAGCGCTTGCGT 58.749 47.619 13.26 3.24 45.69 5.24
596 597 3.120095 ACGTATATATGAGCGCTTGCGTA 60.120 43.478 17.00 9.33 45.69 4.42
597 598 4.035684 CGTATATATGAGCGCTTGCGTAT 58.964 43.478 13.26 13.43 45.69 3.06
598 599 4.086075 CGTATATATGAGCGCTTGCGTATG 60.086 45.833 13.26 2.52 45.69 2.39
599 600 2.154854 ATATGAGCGCTTGCGTATGT 57.845 45.000 13.26 5.01 45.69 2.29
600 601 2.785713 TATGAGCGCTTGCGTATGTA 57.214 45.000 13.26 3.16 45.69 2.29
601 602 1.209128 ATGAGCGCTTGCGTATGTAC 58.791 50.000 13.26 0.00 45.69 2.90
602 603 0.172578 TGAGCGCTTGCGTATGTACT 59.827 50.000 13.26 3.73 45.69 2.73
603 604 0.572590 GAGCGCTTGCGTATGTACTG 59.427 55.000 13.26 0.00 45.69 2.74
604 605 0.108804 AGCGCTTGCGTATGTACTGT 60.109 50.000 16.38 0.00 45.69 3.55
605 606 0.025001 GCGCTTGCGTATGTACTGTG 59.975 55.000 16.38 0.00 0.00 3.66
606 607 1.346365 CGCTTGCGTATGTACTGTGT 58.654 50.000 6.86 0.00 0.00 3.72
607 608 1.320555 CGCTTGCGTATGTACTGTGTC 59.679 52.381 6.86 0.00 0.00 3.67
608 609 2.333926 GCTTGCGTATGTACTGTGTCA 58.666 47.619 0.00 0.00 0.00 3.58
609 610 2.734606 GCTTGCGTATGTACTGTGTCAA 59.265 45.455 0.00 0.00 0.00 3.18
610 611 3.185594 GCTTGCGTATGTACTGTGTCAAA 59.814 43.478 0.00 0.00 0.00 2.69
611 612 4.319190 GCTTGCGTATGTACTGTGTCAAAA 60.319 41.667 0.00 0.00 0.00 2.44
612 613 5.736486 TTGCGTATGTACTGTGTCAAAAA 57.264 34.783 0.00 0.00 0.00 1.94
640 641 8.877864 TGGCCATATATAGTAAGGAAAAATGG 57.122 34.615 0.00 0.00 35.52 3.16
641 642 7.893302 TGGCCATATATAGTAAGGAAAAATGGG 59.107 37.037 0.00 0.00 33.51 4.00
642 643 7.893833 GGCCATATATAGTAAGGAAAAATGGGT 59.106 37.037 0.00 0.00 33.51 4.51
643 644 9.969001 GCCATATATAGTAAGGAAAAATGGGTA 57.031 33.333 0.00 0.00 33.51 3.69
649 650 6.928348 AGTAAGGAAAAATGGGTAAAAGGG 57.072 37.500 0.00 0.00 0.00 3.95
650 651 6.626238 AGTAAGGAAAAATGGGTAAAAGGGA 58.374 36.000 0.00 0.00 0.00 4.20
651 652 7.077095 AGTAAGGAAAAATGGGTAAAAGGGAA 58.923 34.615 0.00 0.00 0.00 3.97
652 653 6.833346 AAGGAAAAATGGGTAAAAGGGAAA 57.167 33.333 0.00 0.00 0.00 3.13
653 654 6.182507 AGGAAAAATGGGTAAAAGGGAAAC 57.817 37.500 0.00 0.00 0.00 2.78
654 655 4.992319 GGAAAAATGGGTAAAAGGGAAACG 59.008 41.667 0.00 0.00 0.00 3.60
655 656 5.221481 GGAAAAATGGGTAAAAGGGAAACGA 60.221 40.000 0.00 0.00 0.00 3.85
656 657 5.873146 AAAATGGGTAAAAGGGAAACGAA 57.127 34.783 0.00 0.00 0.00 3.85
657 658 5.873146 AAATGGGTAAAAGGGAAACGAAA 57.127 34.783 0.00 0.00 0.00 3.46
658 659 5.873146 AATGGGTAAAAGGGAAACGAAAA 57.127 34.783 0.00 0.00 0.00 2.29
659 660 5.873146 ATGGGTAAAAGGGAAACGAAAAA 57.127 34.783 0.00 0.00 0.00 1.94
679 680 6.969993 AAAAATCAGGCCAAACTAGTACAA 57.030 33.333 5.01 0.00 0.00 2.41
680 681 5.959618 AAATCAGGCCAAACTAGTACAAC 57.040 39.130 5.01 0.00 0.00 3.32
681 682 4.634012 ATCAGGCCAAACTAGTACAACA 57.366 40.909 5.01 0.00 0.00 3.33
682 683 3.735591 TCAGGCCAAACTAGTACAACAC 58.264 45.455 5.01 0.00 0.00 3.32
683 684 2.478894 CAGGCCAAACTAGTACAACACG 59.521 50.000 5.01 0.00 0.00 4.49
684 685 1.802365 GGCCAAACTAGTACAACACGG 59.198 52.381 0.00 0.00 0.00 4.94
685 686 1.196127 GCCAAACTAGTACAACACGGC 59.804 52.381 0.00 0.00 0.00 5.68
686 687 2.762745 CCAAACTAGTACAACACGGCT 58.237 47.619 0.00 0.00 0.00 5.52
687 688 3.135994 CCAAACTAGTACAACACGGCTT 58.864 45.455 0.00 0.00 0.00 4.35
688 689 4.309099 CCAAACTAGTACAACACGGCTTA 58.691 43.478 0.00 0.00 0.00 3.09
689 690 4.933400 CCAAACTAGTACAACACGGCTTAT 59.067 41.667 0.00 0.00 0.00 1.73
690 691 5.063060 CCAAACTAGTACAACACGGCTTATC 59.937 44.000 0.00 0.00 0.00 1.75
691 692 4.025015 ACTAGTACAACACGGCTTATCG 57.975 45.455 0.00 0.00 0.00 2.92
692 693 3.691118 ACTAGTACAACACGGCTTATCGA 59.309 43.478 0.00 0.00 0.00 3.59
693 694 3.146618 AGTACAACACGGCTTATCGAG 57.853 47.619 0.00 0.00 0.00 4.04
694 695 2.490903 AGTACAACACGGCTTATCGAGT 59.509 45.455 0.00 0.00 35.65 4.18
695 696 2.450609 ACAACACGGCTTATCGAGTT 57.549 45.000 0.00 0.00 42.68 3.01
696 697 2.762745 ACAACACGGCTTATCGAGTTT 58.237 42.857 0.00 0.00 40.71 2.66
697 698 3.135994 ACAACACGGCTTATCGAGTTTT 58.864 40.909 0.00 0.00 40.71 2.43
698 699 3.562557 ACAACACGGCTTATCGAGTTTTT 59.437 39.130 0.00 0.00 40.71 1.94
750 751 3.813724 GGCCTGGAGGACCCATGG 61.814 72.222 4.14 4.14 45.57 3.66
751 752 2.692368 GCCTGGAGGACCCATGGA 60.692 66.667 15.22 0.00 45.57 3.41
752 753 2.750657 GCCTGGAGGACCCATGGAG 61.751 68.421 15.22 5.95 45.57 3.86
753 754 2.074948 CCTGGAGGACCCATGGAGG 61.075 68.421 15.22 6.12 45.57 4.30
754 755 1.003442 CTGGAGGACCCATGGAGGA 59.997 63.158 15.22 0.00 45.57 3.71
755 756 1.003442 TGGAGGACCCATGGAGGAG 59.997 63.158 15.22 0.00 40.82 3.69
756 757 1.768077 GGAGGACCCATGGAGGAGG 60.768 68.421 15.22 0.00 41.22 4.30
757 758 1.314867 GAGGACCCATGGAGGAGGA 59.685 63.158 15.22 0.00 41.22 3.71
758 759 0.104725 GAGGACCCATGGAGGAGGAT 60.105 60.000 15.22 0.00 41.22 3.24
759 760 0.401105 AGGACCCATGGAGGAGGATG 60.401 60.000 15.22 0.00 41.22 3.51
760 761 1.453669 GACCCATGGAGGAGGATGC 59.546 63.158 15.22 0.00 41.22 3.91
761 762 1.308128 ACCCATGGAGGAGGATGCA 60.308 57.895 15.22 0.00 41.22 3.96
762 763 1.150081 CCCATGGAGGAGGATGCAC 59.850 63.158 15.22 0.00 41.22 4.57
763 764 1.150081 CCATGGAGGAGGATGCACC 59.850 63.158 5.56 0.00 41.22 5.01
765 766 4.248908 TGGAGGAGGATGCACCAA 57.751 55.556 3.11 0.00 45.23 3.67
766 767 1.993653 TGGAGGAGGATGCACCAAG 59.006 57.895 3.11 0.00 45.23 3.61
778 779 0.740737 GCACCAAGAATCAATCCCGG 59.259 55.000 0.00 0.00 0.00 5.73
823 824 5.837829 TCTAAAAGGCCCAATAGTCCAAAT 58.162 37.500 0.00 0.00 0.00 2.32
831 832 4.099266 GCCCAATAGTCCAAATTGCATACA 59.901 41.667 0.00 0.00 33.80 2.29
832 833 5.395103 GCCCAATAGTCCAAATTGCATACAA 60.395 40.000 0.00 0.00 40.87 2.41
880 881 8.091449 CCAAAAATAAGTTGCTGTAACCCAATA 58.909 33.333 4.96 0.00 40.24 1.90
891 892 0.988832 AACCCAATAGGAAGCCGACA 59.011 50.000 0.00 0.00 39.89 4.35
1137 1169 2.048222 TGGAACGCTCGCTTCCAG 60.048 61.111 16.46 0.00 41.92 3.86
1138 1170 2.048127 GGAACGCTCGCTTCCAGT 60.048 61.111 14.27 0.00 37.68 4.00
1139 1171 1.668151 GGAACGCTCGCTTCCAGTT 60.668 57.895 14.27 0.00 37.68 3.16
1140 1172 1.627550 GGAACGCTCGCTTCCAGTTC 61.628 60.000 14.27 6.65 37.68 3.01
1141 1173 1.627550 GAACGCTCGCTTCCAGTTCC 61.628 60.000 0.00 0.00 36.23 3.62
1142 1174 2.048222 CGCTCGCTTCCAGTTCCA 60.048 61.111 0.00 0.00 0.00 3.53
1152 1184 0.321564 TCCAGTTCCACATCGCCTTG 60.322 55.000 0.00 0.00 0.00 3.61
1225 1257 2.507944 CGGATCCCAGGAAGCAGG 59.492 66.667 6.06 0.00 0.00 4.85
1425 1464 0.920763 TACCTCGTGGTCCTCCCCTA 60.921 60.000 13.38 0.00 44.78 3.53
1564 1606 5.987098 AGATCTATGCTGACATCTGTTTGT 58.013 37.500 0.00 0.00 37.74 2.83
1578 1621 1.414919 TGTTTGTTACGCTCCTCCACT 59.585 47.619 0.00 0.00 0.00 4.00
1596 1639 2.859273 CTTCAGCTGGCCCCGTACTG 62.859 65.000 15.13 0.30 0.00 2.74
1614 1657 2.125106 GGCGGCGAATGGAACTCT 60.125 61.111 12.98 0.00 0.00 3.24
1630 1673 4.202121 GGAACTCTATGCGTCTACCAATCA 60.202 45.833 0.00 0.00 0.00 2.57
1657 1703 4.319333 GCATCGACAATGTCAATGATCCTC 60.319 45.833 17.57 0.00 37.71 3.71
1924 2000 2.438434 GGCATTGGTCACGGGGAG 60.438 66.667 0.00 0.00 0.00 4.30
2078 2186 3.116079 TGTTCCCTCAAGTAAACGTCC 57.884 47.619 0.00 0.00 0.00 4.79
2098 2206 2.487805 CCACAGGCCATATGTAGTGCAT 60.488 50.000 5.01 0.00 41.42 3.96
2129 2237 4.206404 TCAGCGAATTCGAATACGTCATTC 59.794 41.667 31.01 8.66 43.02 2.67
2179 2287 1.290324 CACCAGGACAGTGGAGTCG 59.710 63.158 0.00 0.00 40.44 4.18
2199 2307 5.009010 AGTCGATTTCCCAATACATCAATGC 59.991 40.000 0.00 0.00 0.00 3.56
2200 2308 4.886489 TCGATTTCCCAATACATCAATGCA 59.114 37.500 0.00 0.00 0.00 3.96
2287 2395 3.272285 TCCTCCCCTGTGAATTCTCTAGA 59.728 47.826 7.05 0.00 0.00 2.43
2308 2416 0.612174 TCCTTCGTCTCTCCAGGTGG 60.612 60.000 0.00 0.00 0.00 4.61
2320 2429 3.205507 TCTCCAGGTGGTAGCTTCTATCT 59.794 47.826 0.00 0.00 36.34 1.98
2321 2430 4.415846 TCTCCAGGTGGTAGCTTCTATCTA 59.584 45.833 0.00 0.00 36.34 1.98
2322 2431 4.471548 TCCAGGTGGTAGCTTCTATCTAC 58.528 47.826 0.00 0.00 36.55 2.59
2323 2432 4.079385 TCCAGGTGGTAGCTTCTATCTACA 60.079 45.833 0.00 0.00 38.45 2.74
2324 2433 4.649674 CCAGGTGGTAGCTTCTATCTACAA 59.350 45.833 0.00 0.00 38.45 2.41
2325 2434 5.452077 CCAGGTGGTAGCTTCTATCTACAAC 60.452 48.000 0.00 0.00 39.24 3.32
2326 2435 5.127194 CAGGTGGTAGCTTCTATCTACAACA 59.873 44.000 9.19 0.00 40.87 3.33
2327 2436 5.900123 AGGTGGTAGCTTCTATCTACAACAT 59.100 40.000 9.19 0.71 40.87 2.71
2328 2437 6.041069 AGGTGGTAGCTTCTATCTACAACATC 59.959 42.308 9.19 0.00 40.87 3.06
2329 2438 6.041069 GGTGGTAGCTTCTATCTACAACATCT 59.959 42.308 9.19 0.00 40.87 2.90
2330 2439 7.230913 GGTGGTAGCTTCTATCTACAACATCTA 59.769 40.741 9.19 0.00 40.87 1.98
2610 2760 9.740710 GGATTACCTTGGTAGCAATATTATCTT 57.259 33.333 7.98 0.00 0.00 2.40
2620 2770 9.562583 GGTAGCAATATTATCTTCTTACTCTCG 57.437 37.037 0.00 0.00 0.00 4.04
2643 2793 5.238432 CGTGTATGCACCATGGTAACAATAT 59.762 40.000 19.28 6.96 46.95 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.046663 TCAACTTTCTTTTGCAAAAGGGACT 60.047 36.000 38.33 22.78 44.22 3.85
132 133 2.204385 TATTGGCCCCCACCACCT 60.204 61.111 0.00 0.00 40.19 4.00
140 141 2.525105 TTTCTTGAGGTATTGGCCCC 57.475 50.000 0.00 0.00 0.00 5.80
141 142 2.760650 CCTTTTCTTGAGGTATTGGCCC 59.239 50.000 0.00 0.00 0.00 5.80
142 143 3.696548 CTCCTTTTCTTGAGGTATTGGCC 59.303 47.826 0.00 0.00 35.71 5.36
143 144 3.696548 CCTCCTTTTCTTGAGGTATTGGC 59.303 47.826 0.00 0.00 42.67 4.52
144 145 4.273318 CCCTCCTTTTCTTGAGGTATTGG 58.727 47.826 4.96 0.00 45.56 3.16
145 146 4.273318 CCCCTCCTTTTCTTGAGGTATTG 58.727 47.826 4.96 0.00 45.56 1.90
146 147 3.309193 GCCCCTCCTTTTCTTGAGGTATT 60.309 47.826 4.96 0.00 45.56 1.89
147 148 2.242452 GCCCCTCCTTTTCTTGAGGTAT 59.758 50.000 4.96 0.00 45.56 2.73
148 149 1.633945 GCCCCTCCTTTTCTTGAGGTA 59.366 52.381 4.96 0.00 45.56 3.08
149 150 0.405973 GCCCCTCCTTTTCTTGAGGT 59.594 55.000 4.96 0.00 45.56 3.85
150 151 0.678048 CGCCCCTCCTTTTCTTGAGG 60.678 60.000 0.00 0.00 46.39 3.86
151 152 0.324943 TCGCCCCTCCTTTTCTTGAG 59.675 55.000 0.00 0.00 0.00 3.02
152 153 0.768622 TTCGCCCCTCCTTTTCTTGA 59.231 50.000 0.00 0.00 0.00 3.02
153 154 1.745653 GATTCGCCCCTCCTTTTCTTG 59.254 52.381 0.00 0.00 0.00 3.02
154 155 1.679032 CGATTCGCCCCTCCTTTTCTT 60.679 52.381 0.00 0.00 0.00 2.52
155 156 0.107654 CGATTCGCCCCTCCTTTTCT 60.108 55.000 0.00 0.00 0.00 2.52
156 157 1.095807 CCGATTCGCCCCTCCTTTTC 61.096 60.000 0.00 0.00 0.00 2.29
157 158 1.077716 CCGATTCGCCCCTCCTTTT 60.078 57.895 0.00 0.00 0.00 2.27
158 159 2.590092 CCGATTCGCCCCTCCTTT 59.410 61.111 0.00 0.00 0.00 3.11
159 160 3.480133 CCCGATTCGCCCCTCCTT 61.480 66.667 0.00 0.00 0.00 3.36
160 161 4.475444 TCCCGATTCGCCCCTCCT 62.475 66.667 0.00 0.00 0.00 3.69
161 162 3.930012 CTCCCGATTCGCCCCTCC 61.930 72.222 0.00 0.00 0.00 4.30
162 163 1.968050 TTTCTCCCGATTCGCCCCTC 61.968 60.000 0.00 0.00 0.00 4.30
163 164 1.993391 TTTCTCCCGATTCGCCCCT 60.993 57.895 0.00 0.00 0.00 4.79
164 165 1.818363 GTTTCTCCCGATTCGCCCC 60.818 63.158 0.00 0.00 0.00 5.80
165 166 1.818363 GGTTTCTCCCGATTCGCCC 60.818 63.158 0.00 0.00 0.00 6.13
166 167 1.078708 TGGTTTCTCCCGATTCGCC 60.079 57.895 0.00 0.00 34.77 5.54
167 168 1.693083 CGTGGTTTCTCCCGATTCGC 61.693 60.000 0.00 0.00 33.75 4.70
168 169 0.108992 TCGTGGTTTCTCCCGATTCG 60.109 55.000 0.00 0.00 35.27 3.34
169 170 1.356938 GTCGTGGTTTCTCCCGATTC 58.643 55.000 0.00 0.00 39.59 2.52
170 171 0.036671 GGTCGTGGTTTCTCCCGATT 60.037 55.000 0.00 0.00 39.59 3.34
171 172 1.189524 TGGTCGTGGTTTCTCCCGAT 61.190 55.000 0.00 0.00 39.59 4.18
172 173 1.833492 TGGTCGTGGTTTCTCCCGA 60.833 57.895 0.00 0.00 36.86 5.14
173 174 1.666872 GTGGTCGTGGTTTCTCCCG 60.667 63.158 0.00 0.00 34.77 5.14
174 175 0.036306 ATGTGGTCGTGGTTTCTCCC 59.964 55.000 0.00 0.00 34.77 4.30
175 176 1.892209 AATGTGGTCGTGGTTTCTCC 58.108 50.000 0.00 0.00 0.00 3.71
176 177 4.504858 AGATAATGTGGTCGTGGTTTCTC 58.495 43.478 0.00 0.00 0.00 2.87
177 178 4.553330 AGATAATGTGGTCGTGGTTTCT 57.447 40.909 0.00 0.00 0.00 2.52
178 179 5.175126 CGATAGATAATGTGGTCGTGGTTTC 59.825 44.000 0.00 0.00 39.76 2.78
179 180 5.047847 CGATAGATAATGTGGTCGTGGTTT 58.952 41.667 0.00 0.00 39.76 3.27
180 181 4.340097 TCGATAGATAATGTGGTCGTGGTT 59.660 41.667 0.00 0.00 42.67 3.67
181 182 3.887110 TCGATAGATAATGTGGTCGTGGT 59.113 43.478 0.00 0.00 42.67 4.16
182 183 4.499037 TCGATAGATAATGTGGTCGTGG 57.501 45.455 0.00 0.00 42.67 4.94
197 198 8.332464 CGGTCTAGATCTATTTTAGCTCGATAG 58.668 40.741 2.11 0.00 0.00 2.08
198 199 7.201626 GCGGTCTAGATCTATTTTAGCTCGATA 60.202 40.741 2.11 0.00 0.00 2.92
199 200 6.403855 GCGGTCTAGATCTATTTTAGCTCGAT 60.404 42.308 2.11 0.00 0.00 3.59
200 201 5.106634 GCGGTCTAGATCTATTTTAGCTCGA 60.107 44.000 2.11 0.00 0.00 4.04
201 202 5.090083 GCGGTCTAGATCTATTTTAGCTCG 58.910 45.833 2.11 2.15 0.00 5.03
202 203 5.047943 TGGCGGTCTAGATCTATTTTAGCTC 60.048 44.000 2.11 2.21 0.00 4.09
203 204 4.833380 TGGCGGTCTAGATCTATTTTAGCT 59.167 41.667 2.11 0.00 0.00 3.32
204 205 5.135508 TGGCGGTCTAGATCTATTTTAGC 57.864 43.478 2.11 5.95 0.00 3.09
205 206 5.164954 GCTGGCGGTCTAGATCTATTTTAG 58.835 45.833 2.11 0.00 0.00 1.85
206 207 4.587262 TGCTGGCGGTCTAGATCTATTTTA 59.413 41.667 2.11 0.00 0.00 1.52
207 208 3.388024 TGCTGGCGGTCTAGATCTATTTT 59.612 43.478 2.11 0.00 0.00 1.82
208 209 2.965831 TGCTGGCGGTCTAGATCTATTT 59.034 45.455 2.11 0.00 0.00 1.40
209 210 2.560542 CTGCTGGCGGTCTAGATCTATT 59.439 50.000 2.11 0.00 0.00 1.73
210 211 2.166829 CTGCTGGCGGTCTAGATCTAT 58.833 52.381 2.11 0.00 0.00 1.98
211 212 1.133761 ACTGCTGGCGGTCTAGATCTA 60.134 52.381 1.69 1.69 0.00 1.98
212 213 0.396417 ACTGCTGGCGGTCTAGATCT 60.396 55.000 0.00 0.00 0.00 2.75
213 214 0.031449 GACTGCTGGCGGTCTAGATC 59.969 60.000 22.66 0.00 45.95 2.75
214 215 1.729470 CGACTGCTGGCGGTCTAGAT 61.729 60.000 25.58 0.00 46.92 1.98
215 216 2.407428 CGACTGCTGGCGGTCTAGA 61.407 63.158 25.58 0.00 46.92 2.43
216 217 2.103143 CGACTGCTGGCGGTCTAG 59.897 66.667 25.58 12.23 46.92 2.43
217 218 2.360726 TCGACTGCTGGCGGTCTA 60.361 61.111 25.58 16.21 46.92 2.59
218 219 4.057428 GTCGACTGCTGGCGGTCT 62.057 66.667 25.58 0.00 46.92 3.85
219 220 3.858868 TTGTCGACTGCTGGCGGTC 62.859 63.158 19.42 20.76 45.97 4.79
220 221 2.933878 TTTTGTCGACTGCTGGCGGT 62.934 55.000 19.42 6.77 38.41 5.68
221 222 2.250939 TTTTGTCGACTGCTGGCGG 61.251 57.895 19.42 0.31 0.00 6.13
222 223 1.082756 GTTTTGTCGACTGCTGGCG 60.083 57.895 17.92 13.37 0.00 5.69
223 224 1.282875 GGTTTTGTCGACTGCTGGC 59.717 57.895 17.92 2.30 0.00 4.85
224 225 0.307760 GTGGTTTTGTCGACTGCTGG 59.692 55.000 17.92 0.00 0.00 4.85
225 226 1.013596 TGTGGTTTTGTCGACTGCTG 58.986 50.000 17.92 0.00 0.00 4.41
226 227 1.873591 GATGTGGTTTTGTCGACTGCT 59.126 47.619 17.92 0.00 0.00 4.24
227 228 1.601903 TGATGTGGTTTTGTCGACTGC 59.398 47.619 17.92 4.06 0.00 4.40
228 229 3.064682 TGTTGATGTGGTTTTGTCGACTG 59.935 43.478 17.92 0.00 0.00 3.51
229 230 3.275143 TGTTGATGTGGTTTTGTCGACT 58.725 40.909 17.92 0.00 0.00 4.18
230 231 3.684103 TGTTGATGTGGTTTTGTCGAC 57.316 42.857 9.11 9.11 0.00 4.20
231 232 4.667262 CTTTGTTGATGTGGTTTTGTCGA 58.333 39.130 0.00 0.00 0.00 4.20
232 233 3.242712 GCTTTGTTGATGTGGTTTTGTCG 59.757 43.478 0.00 0.00 0.00 4.35
233 234 3.242712 CGCTTTGTTGATGTGGTTTTGTC 59.757 43.478 0.00 0.00 0.00 3.18
234 235 3.186119 CGCTTTGTTGATGTGGTTTTGT 58.814 40.909 0.00 0.00 0.00 2.83
235 236 3.186119 ACGCTTTGTTGATGTGGTTTTG 58.814 40.909 0.00 0.00 0.00 2.44
236 237 3.518634 ACGCTTTGTTGATGTGGTTTT 57.481 38.095 0.00 0.00 0.00 2.43
237 238 3.550030 GCTACGCTTTGTTGATGTGGTTT 60.550 43.478 0.00 0.00 0.00 3.27
238 239 2.031157 GCTACGCTTTGTTGATGTGGTT 60.031 45.455 0.00 0.00 0.00 3.67
239 240 1.535462 GCTACGCTTTGTTGATGTGGT 59.465 47.619 0.00 0.00 0.00 4.16
240 241 1.135689 GGCTACGCTTTGTTGATGTGG 60.136 52.381 0.00 0.00 0.00 4.17
241 242 1.535028 TGGCTACGCTTTGTTGATGTG 59.465 47.619 0.00 0.00 0.00 3.21
242 243 1.890876 TGGCTACGCTTTGTTGATGT 58.109 45.000 0.00 0.00 0.00 3.06
243 244 2.419673 TCATGGCTACGCTTTGTTGATG 59.580 45.455 0.00 0.00 0.00 3.07
244 245 2.679837 CTCATGGCTACGCTTTGTTGAT 59.320 45.455 0.00 0.00 0.00 2.57
245 246 2.076100 CTCATGGCTACGCTTTGTTGA 58.924 47.619 0.00 0.00 0.00 3.18
246 247 1.131126 CCTCATGGCTACGCTTTGTTG 59.869 52.381 0.00 0.00 0.00 3.33
247 248 1.003118 TCCTCATGGCTACGCTTTGTT 59.997 47.619 0.00 0.00 0.00 2.83
248 249 0.613260 TCCTCATGGCTACGCTTTGT 59.387 50.000 0.00 0.00 0.00 2.83
249 250 1.737838 TTCCTCATGGCTACGCTTTG 58.262 50.000 0.00 0.00 0.00 2.77
250 251 2.084546 GTTTCCTCATGGCTACGCTTT 58.915 47.619 0.00 0.00 0.00 3.51
251 252 1.003118 TGTTTCCTCATGGCTACGCTT 59.997 47.619 0.00 0.00 0.00 4.68
252 253 0.613260 TGTTTCCTCATGGCTACGCT 59.387 50.000 0.00 0.00 0.00 5.07
253 254 1.398390 CTTGTTTCCTCATGGCTACGC 59.602 52.381 0.00 0.00 0.00 4.42
254 255 2.009774 CCTTGTTTCCTCATGGCTACG 58.990 52.381 0.00 0.00 0.00 3.51
259 260 0.251742 TGGGCCTTGTTTCCTCATGG 60.252 55.000 4.53 0.00 36.24 3.66
260 261 1.479323 CATGGGCCTTGTTTCCTCATG 59.521 52.381 11.13 0.00 0.00 3.07
261 262 1.620524 CCATGGGCCTTGTTTCCTCAT 60.621 52.381 17.23 0.00 0.00 2.90
262 263 0.251742 CCATGGGCCTTGTTTCCTCA 60.252 55.000 17.23 0.00 0.00 3.86
263 264 0.039618 TCCATGGGCCTTGTTTCCTC 59.960 55.000 13.02 0.00 0.00 3.71
264 265 0.040204 CTCCATGGGCCTTGTTTCCT 59.960 55.000 13.02 0.00 0.00 3.36
265 266 0.972471 CCTCCATGGGCCTTGTTTCC 60.972 60.000 13.02 0.00 0.00 3.13
266 267 1.607801 GCCTCCATGGGCCTTGTTTC 61.608 60.000 13.02 1.51 45.92 2.78
267 268 1.610379 GCCTCCATGGGCCTTGTTT 60.610 57.895 13.02 0.00 45.92 2.83
268 269 2.037847 GCCTCCATGGGCCTTGTT 59.962 61.111 13.02 0.00 45.92 2.83
275 276 1.529244 GGATTTCCGCCTCCATGGG 60.529 63.158 13.02 2.26 36.00 4.00
276 277 1.227102 TGGATTTCCGCCTCCATGG 59.773 57.895 4.97 4.97 36.63 3.66
277 278 4.984194 TGGATTTCCGCCTCCATG 57.016 55.556 0.00 0.00 36.63 3.66
279 280 0.472471 GGTATGGATTTCCGCCTCCA 59.528 55.000 0.00 0.00 45.27 3.86
280 281 0.765510 AGGTATGGATTTCCGCCTCC 59.234 55.000 2.53 0.00 39.43 4.30
281 282 1.416401 TGAGGTATGGATTTCCGCCTC 59.584 52.381 19.38 19.38 44.72 4.70
282 283 1.507140 TGAGGTATGGATTTCCGCCT 58.493 50.000 6.83 6.83 39.43 5.52
283 284 2.341846 TTGAGGTATGGATTTCCGCC 57.658 50.000 0.00 0.00 39.43 6.13
284 285 4.712122 TTTTTGAGGTATGGATTTCCGC 57.288 40.909 0.00 0.00 39.43 5.54
302 303 3.263170 CCGATTTCCCCTTTCCCATTTTT 59.737 43.478 0.00 0.00 0.00 1.94
303 304 2.837591 CCGATTTCCCCTTTCCCATTTT 59.162 45.455 0.00 0.00 0.00 1.82
304 305 2.043801 TCCGATTTCCCCTTTCCCATTT 59.956 45.455 0.00 0.00 0.00 2.32
305 306 1.643811 TCCGATTTCCCCTTTCCCATT 59.356 47.619 0.00 0.00 0.00 3.16
306 307 1.215423 CTCCGATTTCCCCTTTCCCAT 59.785 52.381 0.00 0.00 0.00 4.00
307 308 0.623723 CTCCGATTTCCCCTTTCCCA 59.376 55.000 0.00 0.00 0.00 4.37
308 309 0.916809 TCTCCGATTTCCCCTTTCCC 59.083 55.000 0.00 0.00 0.00 3.97
309 310 2.753452 GTTTCTCCGATTTCCCCTTTCC 59.247 50.000 0.00 0.00 0.00 3.13
310 311 2.753452 GGTTTCTCCGATTTCCCCTTTC 59.247 50.000 0.00 0.00 0.00 2.62
311 312 2.109304 TGGTTTCTCCGATTTCCCCTTT 59.891 45.455 0.00 0.00 39.52 3.11
312 313 1.708551 TGGTTTCTCCGATTTCCCCTT 59.291 47.619 0.00 0.00 39.52 3.95
313 314 1.282157 CTGGTTTCTCCGATTTCCCCT 59.718 52.381 0.00 0.00 39.52 4.79
314 315 1.751437 CTGGTTTCTCCGATTTCCCC 58.249 55.000 0.00 0.00 39.52 4.81
315 316 1.095600 GCTGGTTTCTCCGATTTCCC 58.904 55.000 0.00 0.00 39.52 3.97
316 317 1.468914 GTGCTGGTTTCTCCGATTTCC 59.531 52.381 0.00 0.00 39.52 3.13
317 318 2.151202 TGTGCTGGTTTCTCCGATTTC 58.849 47.619 0.00 0.00 39.52 2.17
318 319 2.270352 TGTGCTGGTTTCTCCGATTT 57.730 45.000 0.00 0.00 39.52 2.17
319 320 1.880027 GTTGTGCTGGTTTCTCCGATT 59.120 47.619 0.00 0.00 39.52 3.34
320 321 1.202758 TGTTGTGCTGGTTTCTCCGAT 60.203 47.619 0.00 0.00 39.52 4.18
321 322 0.179234 TGTTGTGCTGGTTTCTCCGA 59.821 50.000 0.00 0.00 39.52 4.55
322 323 1.069022 CATGTTGTGCTGGTTTCTCCG 60.069 52.381 0.00 0.00 39.52 4.63
323 324 2.229792 TCATGTTGTGCTGGTTTCTCC 58.770 47.619 0.00 0.00 0.00 3.71
324 325 4.232221 CAATCATGTTGTGCTGGTTTCTC 58.768 43.478 0.00 0.00 0.00 2.87
325 326 3.553508 GCAATCATGTTGTGCTGGTTTCT 60.554 43.478 9.71 0.00 35.36 2.52
326 327 2.733026 GCAATCATGTTGTGCTGGTTTC 59.267 45.455 9.71 0.00 35.36 2.78
327 328 2.102757 TGCAATCATGTTGTGCTGGTTT 59.897 40.909 15.50 0.00 39.09 3.27
328 329 1.687660 TGCAATCATGTTGTGCTGGTT 59.312 42.857 15.50 0.00 39.09 3.67
329 330 1.330234 TGCAATCATGTTGTGCTGGT 58.670 45.000 15.50 0.00 39.09 4.00
330 331 2.665649 ATGCAATCATGTTGTGCTGG 57.334 45.000 15.50 0.00 39.09 4.85
331 332 6.091577 ACAAATAATGCAATCATGTTGTGCTG 59.908 34.615 15.50 9.06 39.09 4.41
332 333 6.167685 ACAAATAATGCAATCATGTTGTGCT 58.832 32.000 15.50 3.54 39.09 4.40
333 334 6.311935 AGACAAATAATGCAATCATGTTGTGC 59.688 34.615 9.96 9.96 35.21 4.57
334 335 7.821595 AGACAAATAATGCAATCATGTTGTG 57.178 32.000 8.11 0.77 35.21 3.33
335 336 8.308931 AGAAGACAAATAATGCAATCATGTTGT 58.691 29.630 0.00 0.00 36.52 3.32
336 337 8.697846 AGAAGACAAATAATGCAATCATGTTG 57.302 30.769 0.00 0.00 32.23 3.33
337 338 8.746530 AGAGAAGACAAATAATGCAATCATGTT 58.253 29.630 0.00 0.00 32.23 2.71
338 339 8.289939 AGAGAAGACAAATAATGCAATCATGT 57.710 30.769 0.00 0.00 32.23 3.21
339 340 9.582431 AAAGAGAAGACAAATAATGCAATCATG 57.418 29.630 0.00 0.00 32.23 3.07
341 342 9.985730 AAAAAGAGAAGACAAATAATGCAATCA 57.014 25.926 0.00 0.00 0.00 2.57
393 394 1.230324 GGCGCTCCAGGCTTATTAAG 58.770 55.000 7.64 0.00 39.13 1.85
394 395 0.531974 CGGCGCTCCAGGCTTATTAA 60.532 55.000 7.64 0.00 39.13 1.40
395 396 1.069090 CGGCGCTCCAGGCTTATTA 59.931 57.895 7.64 0.00 39.13 0.98
396 397 2.203070 CGGCGCTCCAGGCTTATT 60.203 61.111 7.64 0.00 39.13 1.40
397 398 4.918201 GCGGCGCTCCAGGCTTAT 62.918 66.667 26.86 0.00 39.13 1.73
412 413 4.700365 TGCTCGTGTCGTCTGGCG 62.700 66.667 0.00 0.00 43.01 5.69
413 414 3.106407 GTGCTCGTGTCGTCTGGC 61.106 66.667 0.00 0.00 0.00 4.85
414 415 2.801162 CGTGCTCGTGTCGTCTGG 60.801 66.667 0.00 0.00 0.00 3.86
424 425 0.656259 TATTCCTCTCGACGTGCTCG 59.344 55.000 6.63 6.63 44.44 5.03
425 426 2.452105 GTTATTCCTCTCGACGTGCTC 58.548 52.381 0.00 0.00 0.00 4.26
426 427 1.134560 GGTTATTCCTCTCGACGTGCT 59.865 52.381 0.00 0.00 0.00 4.40
427 428 1.135199 TGGTTATTCCTCTCGACGTGC 60.135 52.381 0.00 0.00 37.07 5.34
428 429 2.933495 TGGTTATTCCTCTCGACGTG 57.067 50.000 0.00 0.00 37.07 4.49
429 430 4.081862 TGAAATGGTTATTCCTCTCGACGT 60.082 41.667 0.00 0.00 37.07 4.34
430 431 4.430007 TGAAATGGTTATTCCTCTCGACG 58.570 43.478 0.00 0.00 37.07 5.12
431 432 5.520649 GTCTGAAATGGTTATTCCTCTCGAC 59.479 44.000 0.00 0.00 37.07 4.20
432 433 5.186992 TGTCTGAAATGGTTATTCCTCTCGA 59.813 40.000 0.00 0.00 37.07 4.04
433 434 5.419542 TGTCTGAAATGGTTATTCCTCTCG 58.580 41.667 0.00 0.00 37.07 4.04
434 435 6.183360 CGTTGTCTGAAATGGTTATTCCTCTC 60.183 42.308 0.00 0.00 37.07 3.20
435 436 5.643777 CGTTGTCTGAAATGGTTATTCCTCT 59.356 40.000 0.00 0.00 37.07 3.69
436 437 5.642063 TCGTTGTCTGAAATGGTTATTCCTC 59.358 40.000 0.00 0.00 37.07 3.71
437 438 5.556915 TCGTTGTCTGAAATGGTTATTCCT 58.443 37.500 0.00 0.00 37.07 3.36
438 439 5.163754 CCTCGTTGTCTGAAATGGTTATTCC 60.164 44.000 0.00 0.00 0.00 3.01
439 440 5.673818 GCCTCGTTGTCTGAAATGGTTATTC 60.674 44.000 0.00 0.00 0.00 1.75
440 441 4.156008 GCCTCGTTGTCTGAAATGGTTATT 59.844 41.667 0.00 0.00 0.00 1.40
441 442 3.689649 GCCTCGTTGTCTGAAATGGTTAT 59.310 43.478 0.00 0.00 0.00 1.89
442 443 3.071479 GCCTCGTTGTCTGAAATGGTTA 58.929 45.455 0.00 0.00 0.00 2.85
443 444 1.880027 GCCTCGTTGTCTGAAATGGTT 59.120 47.619 0.00 0.00 0.00 3.67
444 445 1.523758 GCCTCGTTGTCTGAAATGGT 58.476 50.000 0.00 0.00 0.00 3.55
445 446 0.443869 CGCCTCGTTGTCTGAAATGG 59.556 55.000 0.00 0.00 0.00 3.16
446 447 0.179215 GCGCCTCGTTGTCTGAAATG 60.179 55.000 0.00 0.00 0.00 2.32
447 448 1.298859 GGCGCCTCGTTGTCTGAAAT 61.299 55.000 22.15 0.00 0.00 2.17
448 449 1.959226 GGCGCCTCGTTGTCTGAAA 60.959 57.895 22.15 0.00 0.00 2.69
449 450 1.529152 TAGGCGCCTCGTTGTCTGAA 61.529 55.000 36.73 8.49 0.00 3.02
450 451 1.529152 TTAGGCGCCTCGTTGTCTGA 61.529 55.000 36.73 9.43 0.00 3.27
451 452 1.078759 CTTAGGCGCCTCGTTGTCTG 61.079 60.000 36.73 11.15 0.00 3.51
452 453 1.215647 CTTAGGCGCCTCGTTGTCT 59.784 57.895 36.73 9.44 0.00 3.41
453 454 1.810030 CCTTAGGCGCCTCGTTGTC 60.810 63.158 36.73 0.00 0.00 3.18
454 455 2.264794 CCTTAGGCGCCTCGTTGT 59.735 61.111 36.73 11.27 0.00 3.32
455 456 2.100631 CACCTTAGGCGCCTCGTTG 61.101 63.158 36.73 21.64 0.00 4.10
456 457 1.614241 ATCACCTTAGGCGCCTCGTT 61.614 55.000 36.73 12.66 0.00 3.85
457 458 1.614241 AATCACCTTAGGCGCCTCGT 61.614 55.000 36.73 24.45 0.00 4.18
458 459 0.462047 AAATCACCTTAGGCGCCTCG 60.462 55.000 36.73 24.84 0.00 4.63
459 460 1.401905 CAAAATCACCTTAGGCGCCTC 59.598 52.381 36.73 3.05 0.00 4.70
460 461 1.271926 ACAAAATCACCTTAGGCGCCT 60.272 47.619 34.85 34.85 0.00 5.52
461 462 1.173913 ACAAAATCACCTTAGGCGCC 58.826 50.000 21.89 21.89 0.00 6.53
462 463 4.428615 TTTACAAAATCACCTTAGGCGC 57.571 40.909 0.00 0.00 0.00 6.53
463 464 7.596995 TGAAATTTTACAAAATCACCTTAGGCG 59.403 33.333 0.00 0.00 37.62 5.52
464 465 8.825667 TGAAATTTTACAAAATCACCTTAGGC 57.174 30.769 0.00 0.00 37.62 3.93
476 477 9.299963 CGGCATATCATCTTGAAATTTTACAAA 57.700 29.630 0.00 0.00 0.00 2.83
477 478 7.920151 CCGGCATATCATCTTGAAATTTTACAA 59.080 33.333 0.00 0.00 0.00 2.41
478 479 7.424803 CCGGCATATCATCTTGAAATTTTACA 58.575 34.615 0.00 0.00 0.00 2.41
479 480 6.363357 GCCGGCATATCATCTTGAAATTTTAC 59.637 38.462 24.80 0.00 0.00 2.01
480 481 6.265196 AGCCGGCATATCATCTTGAAATTTTA 59.735 34.615 31.54 0.00 0.00 1.52
481 482 5.069516 AGCCGGCATATCATCTTGAAATTTT 59.930 36.000 31.54 0.00 0.00 1.82
482 483 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
483 484 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
484 485 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
485 486 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
486 487 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
487 488 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
488 489 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
489 490 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
490 491 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
491 492 2.175878 AACTGAGCCGGCATATCATC 57.824 50.000 31.54 16.99 0.00 2.92
492 493 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
493 494 2.418368 AAAACTGAGCCGGCATATCA 57.582 45.000 31.54 22.44 0.00 2.15
510 511 7.944554 CCCTATCCCTATGAGCATCTTTAAAAA 59.055 37.037 0.00 0.00 34.92 1.94
511 512 7.073725 ACCCTATCCCTATGAGCATCTTTAAAA 59.926 37.037 0.00 0.00 34.92 1.52
512 513 6.562608 ACCCTATCCCTATGAGCATCTTTAAA 59.437 38.462 0.00 0.00 34.92 1.52
513 514 6.013379 CACCCTATCCCTATGAGCATCTTTAA 60.013 42.308 0.00 0.00 34.92 1.52
514 515 5.485353 CACCCTATCCCTATGAGCATCTTTA 59.515 44.000 0.00 0.00 34.92 1.85
515 516 4.288105 CACCCTATCCCTATGAGCATCTTT 59.712 45.833 0.00 0.00 34.92 2.52
516 517 3.843027 CACCCTATCCCTATGAGCATCTT 59.157 47.826 0.00 0.00 34.92 2.40
517 518 3.181402 ACACCCTATCCCTATGAGCATCT 60.181 47.826 0.00 0.00 34.92 2.90
518 519 3.055530 CACACCCTATCCCTATGAGCATC 60.056 52.174 0.00 0.00 0.00 3.91
519 520 2.909006 CACACCCTATCCCTATGAGCAT 59.091 50.000 0.00 0.00 0.00 3.79
520 521 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
521 522 2.037772 CACACACCCTATCCCTATGAGC 59.962 54.545 0.00 0.00 0.00 4.26
522 523 3.070159 CACACACACCCTATCCCTATGAG 59.930 52.174 0.00 0.00 0.00 2.90
523 524 3.038280 CACACACACCCTATCCCTATGA 58.962 50.000 0.00 0.00 0.00 2.15
524 525 2.485479 GCACACACACCCTATCCCTATG 60.485 54.545 0.00 0.00 0.00 2.23
525 526 1.768870 GCACACACACCCTATCCCTAT 59.231 52.381 0.00 0.00 0.00 2.57
526 527 1.200519 GCACACACACCCTATCCCTA 58.799 55.000 0.00 0.00 0.00 3.53
527 528 0.840288 TGCACACACACCCTATCCCT 60.840 55.000 0.00 0.00 0.00 4.20
528 529 0.676782 GTGCACACACACCCTATCCC 60.677 60.000 13.17 0.00 46.61 3.85
529 530 2.854522 GTGCACACACACCCTATCC 58.145 57.895 13.17 0.00 46.61 2.59
540 541 2.863655 CTATGAACGCGCGTGCACAC 62.864 60.000 43.46 26.44 42.97 3.82
541 542 2.725699 CTATGAACGCGCGTGCACA 61.726 57.895 43.46 34.95 42.97 4.57
542 543 2.020016 CTATGAACGCGCGTGCAC 59.980 61.111 43.46 31.07 42.97 4.57
543 544 2.126267 TCTATGAACGCGCGTGCA 60.126 55.556 42.66 42.66 42.97 4.57
544 545 2.615618 CTCTATGAACGCGCGTGC 59.384 61.111 38.44 36.01 37.91 5.34
545 546 1.202973 CTCCTCTATGAACGCGCGTG 61.203 60.000 38.44 23.55 0.00 5.34
546 547 1.064296 CTCCTCTATGAACGCGCGT 59.936 57.895 32.73 32.73 0.00 6.01
547 548 0.658829 CTCTCCTCTATGAACGCGCG 60.659 60.000 30.96 30.96 0.00 6.86
548 549 0.382515 ACTCTCCTCTATGAACGCGC 59.617 55.000 5.73 0.00 0.00 6.86
549 550 1.402259 ACACTCTCCTCTATGAACGCG 59.598 52.381 3.53 3.53 0.00 6.01
550 551 4.541779 CATACACTCTCCTCTATGAACGC 58.458 47.826 0.00 0.00 0.00 4.84
551 552 4.036852 TGCATACACTCTCCTCTATGAACG 59.963 45.833 0.00 0.00 0.00 3.95
552 553 5.285651 GTGCATACACTCTCCTCTATGAAC 58.714 45.833 0.00 0.00 43.85 3.18
553 554 4.036852 CGTGCATACACTCTCCTCTATGAA 59.963 45.833 0.00 0.00 45.10 2.57
554 555 3.565902 CGTGCATACACTCTCCTCTATGA 59.434 47.826 0.00 0.00 45.10 2.15
555 556 3.316588 ACGTGCATACACTCTCCTCTATG 59.683 47.826 0.00 0.00 45.10 2.23
556 557 3.556999 ACGTGCATACACTCTCCTCTAT 58.443 45.455 0.00 0.00 45.10 1.98
557 558 3.000684 ACGTGCATACACTCTCCTCTA 57.999 47.619 0.00 0.00 45.10 2.43
558 559 1.840737 ACGTGCATACACTCTCCTCT 58.159 50.000 0.00 0.00 45.10 3.69
559 560 3.992260 ATACGTGCATACACTCTCCTC 57.008 47.619 0.00 0.00 45.10 3.71
560 561 6.884836 TCATATATACGTGCATACACTCTCCT 59.115 38.462 0.00 0.00 45.10 3.69
561 562 7.085052 TCATATATACGTGCATACACTCTCC 57.915 40.000 0.00 0.00 45.10 3.71
562 563 6.689241 GCTCATATATACGTGCATACACTCTC 59.311 42.308 0.00 0.00 45.10 3.20
563 564 6.556212 GCTCATATATACGTGCATACACTCT 58.444 40.000 0.00 0.00 45.10 3.24
564 565 5.452623 CGCTCATATATACGTGCATACACTC 59.547 44.000 0.00 0.00 45.10 3.51
565 566 5.332707 CGCTCATATATACGTGCATACACT 58.667 41.667 0.00 0.00 45.10 3.55
566 567 4.027621 GCGCTCATATATACGTGCATACAC 60.028 45.833 0.00 0.00 43.76 2.90
567 568 4.102649 GCGCTCATATATACGTGCATACA 58.897 43.478 0.00 0.00 33.41 2.29
568 569 4.352039 AGCGCTCATATATACGTGCATAC 58.648 43.478 2.64 0.43 35.49 2.39
569 570 4.632538 AGCGCTCATATATACGTGCATA 57.367 40.909 2.64 0.00 35.49 3.14
570 571 3.510388 AGCGCTCATATATACGTGCAT 57.490 42.857 2.64 0.00 35.49 3.96
571 572 2.986479 CAAGCGCTCATATATACGTGCA 59.014 45.455 12.06 0.00 35.49 4.57
572 573 2.222596 GCAAGCGCTCATATATACGTGC 60.223 50.000 12.06 9.27 34.30 5.34
573 574 2.026860 CGCAAGCGCTCATATATACGTG 59.973 50.000 12.06 1.45 35.30 4.49
574 575 2.251040 CGCAAGCGCTCATATATACGT 58.749 47.619 12.06 0.00 35.30 3.57
575 576 2.251040 ACGCAAGCGCTCATATATACG 58.749 47.619 12.06 2.40 44.19 3.06
576 577 4.798907 ACATACGCAAGCGCTCATATATAC 59.201 41.667 12.06 0.00 44.19 1.47
577 578 4.993905 ACATACGCAAGCGCTCATATATA 58.006 39.130 12.06 0.00 44.19 0.86
578 579 3.849911 ACATACGCAAGCGCTCATATAT 58.150 40.909 12.06 4.29 44.19 0.86
579 580 3.297830 ACATACGCAAGCGCTCATATA 57.702 42.857 12.06 1.64 44.19 0.86
580 581 2.154854 ACATACGCAAGCGCTCATAT 57.845 45.000 12.06 3.50 44.19 1.78
581 582 2.034179 AGTACATACGCAAGCGCTCATA 59.966 45.455 12.06 0.81 44.19 2.15
582 583 1.202417 AGTACATACGCAAGCGCTCAT 60.202 47.619 12.06 0.00 44.19 2.90
583 584 0.172578 AGTACATACGCAAGCGCTCA 59.827 50.000 12.06 0.15 44.19 4.26
584 585 0.572590 CAGTACATACGCAAGCGCTC 59.427 55.000 12.06 0.00 44.19 5.03
585 586 0.108804 ACAGTACATACGCAAGCGCT 60.109 50.000 15.09 2.64 44.19 5.92
586 587 0.025001 CACAGTACATACGCAAGCGC 59.975 55.000 15.09 0.00 44.19 5.92
587 588 1.320555 GACACAGTACATACGCAAGCG 59.679 52.381 13.50 13.50 46.03 4.68
588 589 2.333926 TGACACAGTACATACGCAAGC 58.666 47.619 0.00 0.00 45.62 4.01
590 591 5.736486 TTTTTGACACAGTACATACGCAA 57.264 34.783 0.00 0.00 0.00 4.85
614 615 9.479549 CCATTTTTCCTTACTATATATGGCCAT 57.520 33.333 24.45 24.45 0.00 4.40
615 616 7.893302 CCCATTTTTCCTTACTATATATGGCCA 59.107 37.037 8.56 8.56 31.00 5.36
616 617 7.893833 ACCCATTTTTCCTTACTATATATGGCC 59.106 37.037 0.00 0.00 31.00 5.36
617 618 8.879427 ACCCATTTTTCCTTACTATATATGGC 57.121 34.615 0.00 0.00 31.00 4.40
623 624 9.703677 CCCTTTTACCCATTTTTCCTTACTATA 57.296 33.333 0.00 0.00 0.00 1.31
624 625 8.403474 TCCCTTTTACCCATTTTTCCTTACTAT 58.597 33.333 0.00 0.00 0.00 2.12
625 626 7.767635 TCCCTTTTACCCATTTTTCCTTACTA 58.232 34.615 0.00 0.00 0.00 1.82
626 627 6.626238 TCCCTTTTACCCATTTTTCCTTACT 58.374 36.000 0.00 0.00 0.00 2.24
627 628 6.921486 TCCCTTTTACCCATTTTTCCTTAC 57.079 37.500 0.00 0.00 0.00 2.34
628 629 7.471679 CGTTTCCCTTTTACCCATTTTTCCTTA 60.472 37.037 0.00 0.00 0.00 2.69
629 630 6.597562 GTTTCCCTTTTACCCATTTTTCCTT 58.402 36.000 0.00 0.00 0.00 3.36
630 631 5.221561 CGTTTCCCTTTTACCCATTTTTCCT 60.222 40.000 0.00 0.00 0.00 3.36
631 632 4.992319 CGTTTCCCTTTTACCCATTTTTCC 59.008 41.667 0.00 0.00 0.00 3.13
632 633 5.845103 TCGTTTCCCTTTTACCCATTTTTC 58.155 37.500 0.00 0.00 0.00 2.29
633 634 5.873146 TCGTTTCCCTTTTACCCATTTTT 57.127 34.783 0.00 0.00 0.00 1.94
634 635 5.873146 TTCGTTTCCCTTTTACCCATTTT 57.127 34.783 0.00 0.00 0.00 1.82
635 636 5.873146 TTTCGTTTCCCTTTTACCCATTT 57.127 34.783 0.00 0.00 0.00 2.32
636 637 5.873146 TTTTCGTTTCCCTTTTACCCATT 57.127 34.783 0.00 0.00 0.00 3.16
637 638 5.873146 TTTTTCGTTTCCCTTTTACCCAT 57.127 34.783 0.00 0.00 0.00 4.00
656 657 6.322712 TGTTGTACTAGTTTGGCCTGATTTTT 59.677 34.615 3.32 0.00 0.00 1.94
657 658 5.830991 TGTTGTACTAGTTTGGCCTGATTTT 59.169 36.000 3.32 0.00 0.00 1.82
658 659 5.240844 GTGTTGTACTAGTTTGGCCTGATTT 59.759 40.000 3.32 0.00 0.00 2.17
659 660 4.760204 GTGTTGTACTAGTTTGGCCTGATT 59.240 41.667 3.32 0.00 0.00 2.57
660 661 4.324267 GTGTTGTACTAGTTTGGCCTGAT 58.676 43.478 3.32 0.00 0.00 2.90
661 662 3.735591 GTGTTGTACTAGTTTGGCCTGA 58.264 45.455 3.32 0.00 0.00 3.86
662 663 2.478894 CGTGTTGTACTAGTTTGGCCTG 59.521 50.000 3.32 0.00 0.00 4.85
663 664 2.549349 CCGTGTTGTACTAGTTTGGCCT 60.549 50.000 3.32 0.00 0.00 5.19
664 665 1.802365 CCGTGTTGTACTAGTTTGGCC 59.198 52.381 0.00 0.00 0.00 5.36
665 666 1.196127 GCCGTGTTGTACTAGTTTGGC 59.804 52.381 0.00 0.92 0.00 4.52
666 667 2.762745 AGCCGTGTTGTACTAGTTTGG 58.237 47.619 0.00 0.00 0.00 3.28
667 668 5.220154 CGATAAGCCGTGTTGTACTAGTTTG 60.220 44.000 0.00 0.00 0.00 2.93
668 669 4.860907 CGATAAGCCGTGTTGTACTAGTTT 59.139 41.667 0.00 0.00 0.00 2.66
669 670 4.156556 TCGATAAGCCGTGTTGTACTAGTT 59.843 41.667 0.00 0.00 0.00 2.24
670 671 3.691118 TCGATAAGCCGTGTTGTACTAGT 59.309 43.478 0.00 0.00 0.00 2.57
671 672 4.201891 ACTCGATAAGCCGTGTTGTACTAG 60.202 45.833 0.00 0.00 33.23 2.57
672 673 3.691118 ACTCGATAAGCCGTGTTGTACTA 59.309 43.478 0.00 0.00 33.23 1.82
673 674 2.490903 ACTCGATAAGCCGTGTTGTACT 59.509 45.455 0.00 0.00 33.23 2.73
674 675 2.872370 ACTCGATAAGCCGTGTTGTAC 58.128 47.619 0.00 0.00 33.23 2.90
675 676 3.581024 AACTCGATAAGCCGTGTTGTA 57.419 42.857 0.00 0.00 42.29 2.41
676 677 2.450609 AACTCGATAAGCCGTGTTGT 57.549 45.000 0.00 0.00 42.29 3.32
677 678 3.806316 AAAACTCGATAAGCCGTGTTG 57.194 42.857 0.00 0.00 42.81 3.33
696 697 5.767277 ACCTCGATAAGTCCCCTTAAAAA 57.233 39.130 0.00 0.00 36.76 1.94
697 698 8.551682 TTATACCTCGATAAGTCCCCTTAAAA 57.448 34.615 0.00 0.00 36.76 1.52
698 699 8.731591 ATTATACCTCGATAAGTCCCCTTAAA 57.268 34.615 0.00 0.00 36.76 1.52
719 720 9.172060 GGTCCTCCAGGCCTATTATTATATTAT 57.828 37.037 3.98 0.00 34.44 1.28
720 721 7.571357 GGGTCCTCCAGGCCTATTATTATATTA 59.429 40.741 3.98 0.00 33.64 0.98
721 722 6.390165 GGGTCCTCCAGGCCTATTATTATATT 59.610 42.308 3.98 0.00 33.64 1.28
722 723 5.911766 GGGTCCTCCAGGCCTATTATTATAT 59.088 44.000 3.98 0.00 33.64 0.86
723 724 5.222887 TGGGTCCTCCAGGCCTATTATTATA 60.223 44.000 3.98 0.00 41.46 0.98
724 725 4.112331 GGGTCCTCCAGGCCTATTATTAT 58.888 47.826 3.98 0.00 33.64 1.28
725 726 3.116120 TGGGTCCTCCAGGCCTATTATTA 60.116 47.826 3.98 0.00 41.46 0.98
726 727 2.349445 GGGTCCTCCAGGCCTATTATT 58.651 52.381 3.98 0.00 33.64 1.40
727 728 1.225694 TGGGTCCTCCAGGCCTATTAT 59.774 52.381 3.98 0.00 41.46 1.28
728 729 0.645496 TGGGTCCTCCAGGCCTATTA 59.355 55.000 3.98 0.00 41.46 0.98
729 730 1.400297 TGGGTCCTCCAGGCCTATT 59.600 57.895 3.98 0.00 41.46 1.73
730 731 3.128991 TGGGTCCTCCAGGCCTAT 58.871 61.111 3.98 0.00 41.46 2.57
738 739 1.768077 CCTCCTCCATGGGTCCTCC 60.768 68.421 13.02 0.00 36.20 4.30
739 740 0.104725 ATCCTCCTCCATGGGTCCTC 60.105 60.000 13.02 0.00 36.20 3.71
740 741 0.401105 CATCCTCCTCCATGGGTCCT 60.401 60.000 13.02 0.00 36.20 3.85
741 742 2.061790 GCATCCTCCTCCATGGGTCC 62.062 65.000 13.02 0.00 36.20 4.46
742 743 1.348008 TGCATCCTCCTCCATGGGTC 61.348 60.000 13.02 0.00 36.20 4.46
743 744 1.308128 TGCATCCTCCTCCATGGGT 60.308 57.895 13.02 0.00 36.20 4.51
744 745 1.150081 GTGCATCCTCCTCCATGGG 59.850 63.158 13.02 2.26 36.20 4.00
745 746 1.150081 GGTGCATCCTCCTCCATGG 59.850 63.158 4.97 4.97 37.10 3.66
746 747 0.256752 TTGGTGCATCCTCCTCCATG 59.743 55.000 0.00 0.00 37.07 3.66
747 748 0.549950 CTTGGTGCATCCTCCTCCAT 59.450 55.000 0.00 0.00 37.07 3.41
748 749 0.547471 TCTTGGTGCATCCTCCTCCA 60.547 55.000 0.00 0.00 37.07 3.86
749 750 0.620556 TTCTTGGTGCATCCTCCTCC 59.379 55.000 0.00 0.00 37.07 4.30
750 751 2.092753 TGATTCTTGGTGCATCCTCCTC 60.093 50.000 0.00 0.00 37.07 3.71
751 752 1.918262 TGATTCTTGGTGCATCCTCCT 59.082 47.619 0.00 0.00 37.07 3.69
752 753 2.425143 TGATTCTTGGTGCATCCTCC 57.575 50.000 0.00 0.00 37.07 4.30
753 754 3.317430 GGATTGATTCTTGGTGCATCCTC 59.683 47.826 0.00 0.00 37.07 3.71
754 755 3.294214 GGATTGATTCTTGGTGCATCCT 58.706 45.455 0.00 0.00 37.07 3.24
755 756 2.363359 GGGATTGATTCTTGGTGCATCC 59.637 50.000 0.00 0.00 0.00 3.51
756 757 2.033801 CGGGATTGATTCTTGGTGCATC 59.966 50.000 0.00 0.00 0.00 3.91
757 758 2.026641 CGGGATTGATTCTTGGTGCAT 58.973 47.619 0.00 0.00 0.00 3.96
758 759 1.462616 CGGGATTGATTCTTGGTGCA 58.537 50.000 0.00 0.00 0.00 4.57
759 760 0.740737 CCGGGATTGATTCTTGGTGC 59.259 55.000 0.00 0.00 0.00 5.01
760 761 2.017049 GACCGGGATTGATTCTTGGTG 58.983 52.381 6.32 0.00 33.69 4.17
761 762 1.064685 GGACCGGGATTGATTCTTGGT 60.065 52.381 6.32 0.00 35.43 3.67
762 763 1.064758 TGGACCGGGATTGATTCTTGG 60.065 52.381 6.32 0.00 0.00 3.61
763 764 2.292267 CTGGACCGGGATTGATTCTTG 58.708 52.381 6.32 0.00 0.00 3.02
764 765 1.408822 GCTGGACCGGGATTGATTCTT 60.409 52.381 6.32 0.00 0.00 2.52
765 766 0.181350 GCTGGACCGGGATTGATTCT 59.819 55.000 6.32 0.00 0.00 2.40
766 767 0.181350 AGCTGGACCGGGATTGATTC 59.819 55.000 6.32 0.00 0.00 2.52
796 797 6.362248 TGGACTATTGGGCCTTTTAGATTAC 58.638 40.000 4.53 0.00 45.52 1.89
823 824 2.103094 CGAGGGAGGAGATTGTATGCAA 59.897 50.000 0.00 0.00 39.16 4.08
831 832 6.161705 TGGGTATATATACGAGGGAGGAGATT 59.838 42.308 15.15 0.00 34.11 2.40
832 833 5.675421 TGGGTATATATACGAGGGAGGAGAT 59.325 44.000 15.15 0.00 34.11 2.75
891 892 2.496817 GTTCCGGAGCAGCGATCT 59.503 61.111 14.14 0.00 0.00 2.75
951 976 0.617820 ATTAGGGCGGGTCTCTGTGT 60.618 55.000 0.00 0.00 0.00 3.72
1142 1174 2.434884 CGAGGCACAAGGCGATGT 60.435 61.111 0.00 0.00 46.16 3.06
1425 1464 3.007973 GCGCGTCTTCCCCTTCTCT 62.008 63.158 8.43 0.00 0.00 3.10
1482 1524 1.150536 AAACTCTTGCCCGCCTTCA 59.849 52.632 0.00 0.00 0.00 3.02
1543 1585 6.256539 CGTAACAAACAGATGTCAGCATAGAT 59.743 38.462 0.00 0.00 35.07 1.98
1564 1606 0.246635 GCTGAAGTGGAGGAGCGTAA 59.753 55.000 0.00 0.00 0.00 3.18
1578 1621 2.606519 AGTACGGGGCCAGCTGAA 60.607 61.111 17.39 0.00 0.00 3.02
1596 1639 2.306255 TAGAGTTCCATTCGCCGCCC 62.306 60.000 0.00 0.00 0.00 6.13
1630 1673 4.036567 CATTGACATTGTCGATGCCAAT 57.963 40.909 26.44 12.06 45.94 3.16
1870 1945 1.732941 TCACAAACTTGAGCACACGT 58.267 45.000 0.00 0.00 0.00 4.49
1924 2000 1.831580 AGCCTGAACCAGATTTGAGC 58.168 50.000 0.00 0.00 32.44 4.26
2078 2186 2.330440 TGCACTACATATGGCCTGTG 57.670 50.000 3.32 10.62 0.00 3.66
2098 2206 5.801350 ATTCGAATTCGCTGATGAGAAAA 57.199 34.783 22.90 8.23 35.74 2.29
2129 2237 0.391661 CTGACCACCCACATCTTCCG 60.392 60.000 0.00 0.00 0.00 4.30
2179 2287 6.480981 CCTTTGCATTGATGTATTGGGAAATC 59.519 38.462 0.00 0.00 0.00 2.17
2287 2395 1.827969 CACCTGGAGAGACGAAGGAAT 59.172 52.381 0.00 0.00 33.78 3.01
2321 2430 9.251440 TCAAGTACTAAGTGGTATAGATGTTGT 57.749 33.333 0.00 0.00 0.00 3.32
2355 2475 9.922305 CTAAAATGATTAACGGCAAAACAAAAA 57.078 25.926 0.00 0.00 0.00 1.94
2360 2485 7.061789 CAGGACTAAAATGATTAACGGCAAAAC 59.938 37.037 0.00 0.00 0.00 2.43
2454 2596 6.475727 TCGCTCTTTCTGTAGCACATAAATAC 59.524 38.462 0.00 0.00 38.70 1.89
2455 2597 6.569780 TCGCTCTTTCTGTAGCACATAAATA 58.430 36.000 0.00 0.00 38.70 1.40
2456 2598 5.419542 TCGCTCTTTCTGTAGCACATAAAT 58.580 37.500 0.00 0.00 38.70 1.40
2457 2599 4.816392 TCGCTCTTTCTGTAGCACATAAA 58.184 39.130 0.00 0.00 38.70 1.40
2458 2600 4.424626 CTCGCTCTTTCTGTAGCACATAA 58.575 43.478 0.00 0.00 38.70 1.90
2464 2606 2.880963 ATCCTCGCTCTTTCTGTAGC 57.119 50.000 0.00 0.00 35.33 3.58
2467 2609 3.300388 TCCATATCCTCGCTCTTTCTGT 58.700 45.455 0.00 0.00 0.00 3.41
2527 2669 5.835280 CCCAAAGCTTCATCCTTACCATTAT 59.165 40.000 0.00 0.00 0.00 1.28
2620 2770 4.981806 ATTGTTACCATGGTGCATACAC 57.018 40.909 28.17 13.56 46.66 2.90
2626 2776 6.331369 AGCATAATATTGTTACCATGGTGC 57.669 37.500 28.17 19.37 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.