Multiple sequence alignment - TraesCS5A01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G454600 chr5A 100.000 5698 0 0 1 5698 635509435 635503738 0.000000e+00 10523
1 TraesCS5A01G454600 chr5D 92.031 2083 115 24 2 2069 507894100 507892054 0.000000e+00 2880
2 TraesCS5A01G454600 chr5D 91.458 1639 86 24 2062 3674 507891870 507890260 0.000000e+00 2202
3 TraesCS5A01G454600 chr5D 90.316 1456 70 26 3660 5086 507890244 507888831 0.000000e+00 1842
4 TraesCS5A01G454600 chr5D 92.126 127 6 4 5494 5618 507888447 507888323 5.870000e-40 176
5 TraesCS5A01G454600 chr5B 96.592 1526 47 3 816 2337 639143399 639144923 0.000000e+00 2525
6 TraesCS5A01G454600 chr5B 91.707 1459 73 18 3658 5077 639146246 639147695 0.000000e+00 1980
7 TraesCS5A01G454600 chr5B 92.671 1187 46 19 2497 3664 639145058 639146222 0.000000e+00 1672
8 TraesCS5A01G454600 chr5B 82.614 788 91 20 2 774 639142641 639143397 0.000000e+00 654
9 TraesCS5A01G454600 chr5B 83.830 235 17 10 5477 5698 639147983 639148209 2.690000e-48 204
10 TraesCS5A01G454600 chr6B 89.044 429 36 3 559 987 272816050 272815633 6.540000e-144 521
11 TraesCS5A01G454600 chr6B 90.058 342 30 1 644 985 368563418 368563081 1.880000e-119 440
12 TraesCS5A01G454600 chr4D 91.228 342 26 1 644 985 416249391 416249728 4.020000e-126 462
13 TraesCS5A01G454600 chr3A 88.674 362 36 2 622 983 180049145 180048789 2.440000e-118 436
14 TraesCS5A01G454600 chr2D 89.766 342 30 2 644 985 558861959 558862295 3.150000e-117 433
15 TraesCS5A01G454600 chr2D 89.474 342 27 3 644 985 35635430 35635762 1.900000e-114 424
16 TraesCS5A01G454600 chr6A 89.181 342 33 1 644 985 100395243 100395580 1.900000e-114 424
17 TraesCS5A01G454600 chr3B 89.213 343 32 2 644 985 200085266 200084928 1.900000e-114 424
18 TraesCS5A01G454600 chr3B 89.213 343 32 2 644 985 200104014 200103676 1.900000e-114 424


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G454600 chr5A 635503738 635509435 5697 True 10523 10523 100.00000 1 5698 1 chr5A.!!$R1 5697
1 TraesCS5A01G454600 chr5D 507888323 507894100 5777 True 1775 2880 91.48275 2 5618 4 chr5D.!!$R1 5616
2 TraesCS5A01G454600 chr5B 639142641 639148209 5568 False 1407 2525 89.48280 2 5698 5 chr5B.!!$F1 5696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.390735 CCCGTGGTAGCCTGTGTTAC 60.391 60.000 0.00 0.0 0.00 2.50 F
83 85 0.669625 GCGGTTTTCTAGCTGTCGGT 60.670 55.000 0.00 0.0 0.00 4.69 F
241 248 0.930742 CTCGCAGCGGTTCGATCTAC 60.931 60.000 16.42 0.0 33.98 2.59 F
373 382 1.010462 GTGGACGCCGTTTTGTGTC 60.010 57.895 0.00 0.0 43.40 3.67 F
555 570 1.065854 AGAGGCTTCGTGCTTGCTTAT 60.066 47.619 0.00 0.0 42.39 1.73 F
1404 1435 1.335810 GACCGTGAACCAAACCCTTTC 59.664 52.381 0.00 0.0 0.00 2.62 F
2900 3208 1.072331 GGGGGTTCATATGCATCGTCT 59.928 52.381 0.19 0.0 0.00 4.18 F
4505 4907 0.178068 GCTATTCTGCCCGTTCCTCA 59.822 55.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1657 1.358787 TCCCTGCCTCCAATGACAATT 59.641 47.619 0.00 0.00 0.00 2.32 R
2066 2099 4.033009 TCATAGAATGGGCAGAGAGTGAA 58.967 43.478 0.00 0.00 0.00 3.18 R
2107 2329 2.043411 CACAATGTACGTTGCAAGTGC 58.957 47.619 24.53 4.82 42.50 4.40 R
2117 2339 2.893637 AGGCTTCTAGCACAATGTACG 58.106 47.619 0.67 0.00 44.75 3.67 R
2229 2453 3.070878 TCCACTACTTGACAACATGCTGA 59.929 43.478 2.44 0.00 0.00 4.26 R
3106 3417 1.135774 GGCGCAAAACTAGTAACTGCC 60.136 52.381 10.83 12.17 0.00 4.85 R
4553 4955 0.605319 GTCCACCAAATCGAGCACCA 60.605 55.000 0.00 0.00 0.00 4.17 R
5670 6168 0.518636 CCGTTGCAAGTGGTCATCAG 59.481 55.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.390735 CCCGTGGTAGCCTGTGTTAC 60.391 60.000 0.00 0.00 0.00 2.50
32 33 1.017701 GTGGTAGCCTGTGTTACGCC 61.018 60.000 0.00 0.00 0.00 5.68
60 61 2.783275 CTAGTGCTGCTTGCTGCG 59.217 61.111 17.10 2.30 46.63 5.18
83 85 0.669625 GCGGTTTTCTAGCTGTCGGT 60.670 55.000 0.00 0.00 0.00 4.69
85 87 1.604693 CGGTTTTCTAGCTGTCGGTGT 60.605 52.381 0.00 0.00 0.00 4.16
93 95 2.935955 CTGTCGGTGTGTTTCCGC 59.064 61.111 0.00 0.00 46.49 5.54
229 236 2.391389 CCGGTTTCCTTCTCGCAGC 61.391 63.158 0.00 0.00 0.00 5.25
241 248 0.930742 CTCGCAGCGGTTCGATCTAC 60.931 60.000 16.42 0.00 33.98 2.59
245 252 1.736032 GCAGCGGTTCGATCTACAAGT 60.736 52.381 0.00 0.00 0.00 3.16
259 266 2.651382 ACAAGTTTAGCGGGGTTTCT 57.349 45.000 0.00 0.00 0.00 2.52
311 320 2.671070 GCGAGATTTCCGTGGCAATTTT 60.671 45.455 0.00 0.00 0.00 1.82
312 321 3.574614 CGAGATTTCCGTGGCAATTTTT 58.425 40.909 0.00 0.00 0.00 1.94
357 366 1.525197 TCTTACTGCGCTGTTTTCGTG 59.475 47.619 25.25 9.34 0.00 4.35
373 382 1.010462 GTGGACGCCGTTTTGTGTC 60.010 57.895 0.00 0.00 43.40 3.67
407 416 2.749621 ACTGCTTGTTATGTTAGCCTGC 59.250 45.455 0.00 0.00 34.03 4.85
451 463 1.343142 TGTATGACTGTGCCGTCTGTT 59.657 47.619 0.00 0.00 35.00 3.16
483 495 9.233232 GTTTTGTTTTGATTCTGAGACGTATTT 57.767 29.630 0.00 0.00 0.00 1.40
546 561 5.277058 GCAGATTACATTAAGAGGCTTCGTG 60.277 44.000 0.00 0.00 0.00 4.35
547 562 4.811557 AGATTACATTAAGAGGCTTCGTGC 59.188 41.667 0.00 0.00 41.94 5.34
548 563 2.770164 ACATTAAGAGGCTTCGTGCT 57.230 45.000 0.00 0.00 42.39 4.40
555 570 1.065854 AGAGGCTTCGTGCTTGCTTAT 60.066 47.619 0.00 0.00 42.39 1.73
577 592 8.859517 TTATGTTTTTGTTGGTAGTTTACAGC 57.140 30.769 0.00 0.00 0.00 4.40
602 617 3.251972 GCATGAGCAAAATCTAGGTAGCC 59.748 47.826 0.00 0.00 41.58 3.93
647 662 5.382303 CAACCTAATCGAACAACACATGTC 58.618 41.667 0.00 0.00 42.99 3.06
663 678 5.641709 CACATGTCAGTGTAGATTCTACGT 58.358 41.667 16.92 6.12 34.83 3.57
665 680 6.586463 CACATGTCAGTGTAGATTCTACGTTT 59.414 38.462 16.92 4.54 34.83 3.60
666 681 6.586463 ACATGTCAGTGTAGATTCTACGTTTG 59.414 38.462 16.92 14.33 0.00 2.93
667 682 6.080648 TGTCAGTGTAGATTCTACGTTTGT 57.919 37.500 16.92 0.00 0.00 2.83
668 683 6.147581 TGTCAGTGTAGATTCTACGTTTGTC 58.852 40.000 16.92 12.76 0.00 3.18
672 687 7.040617 TCAGTGTAGATTCTACGTTTGTCTCTT 60.041 37.037 16.92 0.00 0.00 2.85
674 689 6.862090 GTGTAGATTCTACGTTTGTCTCTTGT 59.138 38.462 16.92 0.00 0.00 3.16
675 690 6.861572 TGTAGATTCTACGTTTGTCTCTTGTG 59.138 38.462 16.92 0.00 0.00 3.33
676 691 5.844004 AGATTCTACGTTTGTCTCTTGTGT 58.156 37.500 0.00 0.00 0.00 3.72
677 692 6.281405 AGATTCTACGTTTGTCTCTTGTGTT 58.719 36.000 0.00 0.00 0.00 3.32
678 693 5.961395 TTCTACGTTTGTCTCTTGTGTTC 57.039 39.130 0.00 0.00 0.00 3.18
679 694 4.365723 TCTACGTTTGTCTCTTGTGTTCC 58.634 43.478 0.00 0.00 0.00 3.62
680 695 2.980568 ACGTTTGTCTCTTGTGTTCCA 58.019 42.857 0.00 0.00 0.00 3.53
681 696 3.340034 ACGTTTGTCTCTTGTGTTCCAA 58.660 40.909 0.00 0.00 0.00 3.53
682 697 3.754323 ACGTTTGTCTCTTGTGTTCCAAA 59.246 39.130 0.00 0.00 31.20 3.28
683 698 4.216687 ACGTTTGTCTCTTGTGTTCCAAAA 59.783 37.500 0.00 0.00 31.20 2.44
687 702 7.309920 GTTTGTCTCTTGTGTTCCAAAACTTA 58.690 34.615 0.00 0.00 36.30 2.24
693 708 9.581099 TCTCTTGTGTTCCAAAACTTAAAATTC 57.419 29.630 0.00 0.00 36.30 2.17
696 711 7.835634 TGTGTTCCAAAACTTAAAATTCCAC 57.164 32.000 0.00 0.00 36.30 4.02
698 713 7.762159 TGTGTTCCAAAACTTAAAATTCCACTC 59.238 33.333 0.00 0.00 36.30 3.51
707 722 7.387119 ACTTAAAATTCCACTCCGGTTTATC 57.613 36.000 0.00 0.00 35.57 1.75
714 729 5.687166 TCCACTCCGGTTTATCTATGTTT 57.313 39.130 0.00 0.00 35.57 2.83
756 774 3.921119 ACCTGCATTACACATGTGTTG 57.079 42.857 34.66 27.27 41.83 3.33
757 775 3.485394 ACCTGCATTACACATGTGTTGA 58.515 40.909 34.66 23.64 41.83 3.18
758 776 4.081406 ACCTGCATTACACATGTGTTGAT 58.919 39.130 34.66 24.66 41.83 2.57
759 777 5.252547 ACCTGCATTACACATGTGTTGATA 58.747 37.500 34.66 15.72 41.83 2.15
812 830 9.825972 AAACAATCTGTTCATGTTATCTTTACG 57.174 29.630 0.00 0.00 40.14 3.18
813 831 7.974675 ACAATCTGTTCATGTTATCTTTACGG 58.025 34.615 0.00 0.00 0.00 4.02
883 913 6.197842 GCACTTCTTTTTGTTCAGATTCTGTG 59.802 38.462 13.23 1.38 32.61 3.66
942 973 5.073311 TGTACTGAATAGCTGTTCCTGAC 57.927 43.478 19.18 13.89 0.00 3.51
974 1005 3.488090 GCGTTCAGCCGTAGCACC 61.488 66.667 0.00 0.00 43.56 5.01
1104 1135 2.338620 CAGAACTCGCGTCCCACA 59.661 61.111 5.77 0.00 0.00 4.17
1276 1307 4.421515 CTGCCCCTCCTGGTGCTG 62.422 72.222 0.00 0.00 33.06 4.41
1404 1435 1.335810 GACCGTGAACCAAACCCTTTC 59.664 52.381 0.00 0.00 0.00 2.62
1410 1441 1.449726 AACCAAACCCTTTCGGCGAC 61.450 55.000 10.16 0.00 33.26 5.19
1659 1690 1.992519 GCAGGGATCTGATGGCCTGT 61.993 60.000 3.32 0.00 43.49 4.00
2029 2062 8.662141 ACGATAACCAAATTAACACACAGTATC 58.338 33.333 0.00 0.00 0.00 2.24
2066 2099 4.602340 AGTGATCGTTGTTGGTACTCTT 57.398 40.909 0.00 0.00 0.00 2.85
2107 2329 7.371159 TCTATGAAGAATTGTCTATAGCACGG 58.629 38.462 0.00 0.00 32.16 4.94
2148 2370 4.399934 GTGCTAGAAGCCTAGAACTGTACT 59.600 45.833 0.00 0.00 44.68 2.73
2229 2453 6.095440 GCAGGTTGTGAGAATGGTTATGTATT 59.905 38.462 0.00 0.00 0.00 1.89
2250 2474 3.402110 TCAGCATGTTGTCAAGTAGTGG 58.598 45.455 9.54 0.00 37.40 4.00
2294 2518 7.125391 AGGGAACAAAGATCCTTGCATTTATA 58.875 34.615 3.88 0.00 37.14 0.98
2353 2660 9.905713 AAGATATCTCATAACTTAAACAGCCAA 57.094 29.630 5.51 0.00 0.00 4.52
2354 2661 9.905713 AGATATCTCATAACTTAAACAGCCAAA 57.094 29.630 0.00 0.00 0.00 3.28
2393 2700 5.830912 TCGTTCAGCAATTGAATCAACTTT 58.169 33.333 10.34 0.00 46.85 2.66
2417 2724 2.224621 ACATCTAACACAGTTGCCTGCT 60.225 45.455 0.00 0.00 42.81 4.24
2429 2736 1.570803 TGCCTGCTTTTAATGGCCAT 58.429 45.000 14.09 14.09 44.32 4.40
2443 2750 2.948115 TGGCCATGAATTACTGGATGG 58.052 47.619 0.00 0.00 38.76 3.51
2488 2795 9.436957 TGTTTTTCAATAACAAGCCTTGTAAAA 57.563 25.926 11.10 10.35 44.59 1.52
2491 2798 9.606631 TTTTCAATAACAAGCCTTGTAAAATGT 57.393 25.926 11.10 0.00 44.59 2.71
2492 2799 8.810652 TTCAATAACAAGCCTTGTAAAATGTC 57.189 30.769 11.10 0.00 44.59 3.06
2493 2800 7.946207 TCAATAACAAGCCTTGTAAAATGTCA 58.054 30.769 11.10 0.00 44.59 3.58
2494 2801 8.584157 TCAATAACAAGCCTTGTAAAATGTCAT 58.416 29.630 11.10 0.00 44.59 3.06
2495 2802 9.206870 CAATAACAAGCCTTGTAAAATGTCATT 57.793 29.630 11.10 0.00 44.59 2.57
2496 2803 9.777297 AATAACAAGCCTTGTAAAATGTCATTT 57.223 25.926 11.10 4.91 44.59 2.32
2497 2804 7.481275 AACAAGCCTTGTAAAATGTCATTTG 57.519 32.000 11.10 0.00 44.59 2.32
2760 3067 2.096218 GCTGTTCAGTGCTACTTTTCCG 60.096 50.000 1.78 0.00 0.00 4.30
2793 3100 3.532102 AGTATGGTTCTCTTTGACCCCT 58.468 45.455 0.00 0.00 0.00 4.79
2806 3113 6.988522 TCTTTGACCCCTTGCTTTAAATTAC 58.011 36.000 0.00 0.00 0.00 1.89
2807 3114 6.551601 TCTTTGACCCCTTGCTTTAAATTACA 59.448 34.615 0.00 0.00 0.00 2.41
2870 3177 5.778241 TCACTTATCAGTTGGACAACCTAGA 59.222 40.000 11.28 8.00 42.06 2.43
2900 3208 1.072331 GGGGGTTCATATGCATCGTCT 59.928 52.381 0.19 0.00 0.00 4.18
2922 3230 3.534357 TTTCCTTTCAACCTGGGCATA 57.466 42.857 0.00 0.00 0.00 3.14
2926 3234 3.768757 TCCTTTCAACCTGGGCATAAATG 59.231 43.478 0.00 0.00 0.00 2.32
2938 3246 4.754114 TGGGCATAAATGTTGCTGTTTTTC 59.246 37.500 0.00 0.00 40.03 2.29
3070 3381 3.181514 GCCAGAAAATTGCATGCATGAAC 60.182 43.478 30.64 13.87 0.00 3.18
3084 3395 6.019318 GCATGCATGAACATTTGTCTAATTCC 60.019 38.462 30.64 1.71 0.00 3.01
3088 3399 8.149647 TGCATGAACATTTGTCTAATTCCTTTT 58.850 29.630 0.00 0.00 0.00 2.27
3114 3425 8.736244 TCATTTAAAGTTGAATAGGGCAGTTAC 58.264 33.333 0.00 0.00 0.00 2.50
3118 3429 6.622427 AAGTTGAATAGGGCAGTTACTAGT 57.378 37.500 0.00 0.00 0.00 2.57
3208 3521 7.665559 TGTTCAATTTTCTACTTCTACATGGCT 59.334 33.333 0.00 0.00 0.00 4.75
3215 3528 3.356529 ACTTCTACATGGCTGGGAAAG 57.643 47.619 0.00 0.00 0.00 2.62
3252 3566 9.921637 TTTTGTTGTCTACTGTTTTGATTTCTT 57.078 25.926 0.00 0.00 0.00 2.52
3450 3768 4.272489 TCCTGGAAAGGTGCTATTCATTG 58.728 43.478 0.00 0.00 0.00 2.82
3502 3823 8.249638 TGATTCTCTTAGTTCATGACTTCTCAG 58.750 37.037 0.00 0.00 39.86 3.35
3514 3835 7.621796 TCATGACTTCTCAGTAGACTAGTGTA 58.378 38.462 15.43 0.00 31.22 2.90
3515 3836 7.766738 TCATGACTTCTCAGTAGACTAGTGTAG 59.233 40.741 15.43 13.26 31.22 2.74
3516 3837 7.006865 TGACTTCTCAGTAGACTAGTGTAGT 57.993 40.000 15.43 15.62 35.85 2.73
3517 3838 7.451732 TGACTTCTCAGTAGACTAGTGTAGTT 58.548 38.462 15.43 0.00 34.09 2.24
3518 3839 7.937942 TGACTTCTCAGTAGACTAGTGTAGTTT 59.062 37.037 15.43 1.46 34.09 2.66
3519 3840 8.694581 ACTTCTCAGTAGACTAGTGTAGTTTT 57.305 34.615 15.43 0.00 39.59 2.43
3520 3841 9.134055 ACTTCTCAGTAGACTAGTGTAGTTTTT 57.866 33.333 15.43 0.00 39.59 1.94
3568 3889 5.288472 GGTTATCTTGCTTGGTTAATTTGCG 59.712 40.000 0.00 0.00 0.00 4.85
3586 3907 2.283101 TGGGAGCATGGCCAACAC 60.283 61.111 10.96 3.41 0.00 3.32
3636 3980 9.818270 ATATTAATGTGAGGTCAATTGGATGAT 57.182 29.630 5.42 0.00 0.00 2.45
3704 4078 2.875296 ACAGGGTGATTGCAAGCTAAA 58.125 42.857 16.73 0.00 0.00 1.85
3707 4081 3.194116 CAGGGTGATTGCAAGCTAAATGT 59.806 43.478 16.73 0.00 0.00 2.71
3712 4086 6.389906 GGTGATTGCAAGCTAAATGTAAACT 58.610 36.000 16.73 0.00 0.00 2.66
3782 4169 8.917088 CAACAAGGATAACCAGGATGATTTAAT 58.083 33.333 0.00 0.00 39.69 1.40
3789 4176 2.294233 CCAGGATGATTTAATGGCACCG 59.706 50.000 0.00 0.00 39.69 4.94
3794 4181 5.299279 AGGATGATTTAATGGCACCGTTTAG 59.701 40.000 0.00 0.00 0.00 1.85
3810 4197 6.689669 CACCGTTTAGTTCTTAACTTTTGTGG 59.310 38.462 0.00 0.00 42.81 4.17
3811 4198 6.375174 ACCGTTTAGTTCTTAACTTTTGTGGT 59.625 34.615 0.00 0.00 42.81 4.16
3866 4257 3.244700 CCCATCAACCTCTGTTCTCTTGT 60.245 47.826 0.00 0.00 30.42 3.16
3867 4258 4.392940 CCATCAACCTCTGTTCTCTTGTT 58.607 43.478 0.00 0.00 30.42 2.83
3911 4302 1.376037 CGTGGAGACAAAGAGGGGC 60.376 63.158 0.00 0.00 46.06 5.80
3992 4383 4.360563 GAGATCGTACACAACAGGTATGG 58.639 47.826 0.00 0.00 0.00 2.74
4019 4410 8.730680 CAGAGCTGTGTTTACCTTTACATTATT 58.269 33.333 1.91 0.00 0.00 1.40
4032 4425 9.111519 ACCTTTACATTATTTGGAATTCCCTTT 57.888 29.630 21.90 8.52 35.38 3.11
4033 4426 9.599866 CCTTTACATTATTTGGAATTCCCTTTC 57.400 33.333 21.90 0.00 35.38 2.62
4052 4449 7.232737 TCCCTTTCTTCACGCTAATATCTATCA 59.767 37.037 0.00 0.00 0.00 2.15
4061 4458 8.522830 TCACGCTAATATCTATCATCAACATCA 58.477 33.333 0.00 0.00 0.00 3.07
4071 4468 2.821378 TCATCAACATCAAAGTGCTGGG 59.179 45.455 0.00 0.00 0.00 4.45
4072 4469 2.363306 TCAACATCAAAGTGCTGGGT 57.637 45.000 0.00 0.00 0.00 4.51
4073 4470 2.229792 TCAACATCAAAGTGCTGGGTC 58.770 47.619 0.00 0.00 0.00 4.46
4074 4471 2.158623 TCAACATCAAAGTGCTGGGTCT 60.159 45.455 0.00 0.00 0.00 3.85
4077 4474 2.107204 ACATCAAAGTGCTGGGTCTTCT 59.893 45.455 0.00 0.00 0.00 2.85
4115 4514 2.819608 GTGCATTGTTACCACCATCTGT 59.180 45.455 0.00 0.00 0.00 3.41
4132 4531 6.989169 ACCATCTGTATATCTGTCTGCTTTTC 59.011 38.462 0.00 0.00 0.00 2.29
4289 4691 0.957395 CTGCTCGTGGGCTTGACATT 60.957 55.000 0.00 0.00 0.00 2.71
4334 4736 7.162761 TCAATTTTGATCTGCCAAATGACATT 58.837 30.769 0.00 0.00 36.12 2.71
4358 4760 2.027653 TGACTATGTTCACCGCATTGGA 60.028 45.455 0.00 0.00 42.00 3.53
4505 4907 0.178068 GCTATTCTGCCCGTTCCTCA 59.822 55.000 0.00 0.00 0.00 3.86
4508 4910 2.044123 ATTCTGCCCGTTCCTCATTC 57.956 50.000 0.00 0.00 0.00 2.67
4676 5084 1.286248 GTGGAGGTTATGGTGGAGGT 58.714 55.000 0.00 0.00 0.00 3.85
4701 5109 0.033503 TAGCTCGTGGGACTGATGGA 60.034 55.000 0.00 0.00 0.00 3.41
4711 5124 3.527253 TGGGACTGATGGATTGGTAATGT 59.473 43.478 0.00 0.00 0.00 2.71
4997 5417 2.032030 TGTTGCGCTTCTGCTTCTTTAC 60.032 45.455 9.73 0.00 36.97 2.01
5021 5443 6.995091 ACTAGCAATAGTGATTGGATCCTTTC 59.005 38.462 14.23 10.21 42.44 2.62
5022 5444 6.011122 AGCAATAGTGATTGGATCCTTTCT 57.989 37.500 14.23 6.97 42.44 2.52
5023 5445 5.826737 AGCAATAGTGATTGGATCCTTTCTG 59.173 40.000 14.23 5.09 42.44 3.02
5024 5446 5.506982 GCAATAGTGATTGGATCCTTTCTGC 60.507 44.000 14.23 10.68 42.44 4.26
5025 5447 5.643421 ATAGTGATTGGATCCTTTCTGCT 57.357 39.130 14.23 13.12 0.00 4.24
5029 5451 3.779183 TGATTGGATCCTTTCTGCTCTCT 59.221 43.478 14.23 0.00 0.00 3.10
5067 5489 0.036105 TGCGTCATGGAATGCTGAGT 60.036 50.000 0.00 0.00 46.21 3.41
5079 5501 0.670162 TGCTGAGTTTGCTTGCCTTC 59.330 50.000 0.00 0.00 0.00 3.46
5086 5508 2.560105 AGTTTGCTTGCCTTCTGGAATC 59.440 45.455 0.00 0.00 34.57 2.52
5087 5509 2.291209 TTGCTTGCCTTCTGGAATCA 57.709 45.000 0.00 0.00 34.57 2.57
5088 5510 2.519771 TGCTTGCCTTCTGGAATCAT 57.480 45.000 0.00 0.00 34.57 2.45
5089 5511 3.650281 TGCTTGCCTTCTGGAATCATA 57.350 42.857 0.00 0.00 34.57 2.15
5090 5512 4.174704 TGCTTGCCTTCTGGAATCATAT 57.825 40.909 0.00 0.00 34.57 1.78
5091 5513 4.139786 TGCTTGCCTTCTGGAATCATATC 58.860 43.478 0.00 0.00 34.57 1.63
5092 5514 3.505293 GCTTGCCTTCTGGAATCATATCC 59.495 47.826 0.00 0.00 40.10 2.59
5122 5544 1.753073 CTTGTGAAATCCTGGATGGCC 59.247 52.381 10.54 0.00 35.26 5.36
5128 5550 2.744352 AATCCTGGATGGCCTCTTTC 57.256 50.000 10.54 0.00 35.26 2.62
5129 5551 0.849417 ATCCTGGATGGCCTCTTTCC 59.151 55.000 8.75 5.97 35.26 3.13
5130 5552 1.228510 CCTGGATGGCCTCTTTCCC 59.771 63.158 3.32 0.00 34.31 3.97
5131 5553 1.574526 CCTGGATGGCCTCTTTCCCA 61.575 60.000 3.32 1.27 35.21 4.37
5147 5569 8.088365 CCTCTTTCCCATTCGAAAATTTTACTT 58.912 33.333 0.00 0.00 31.56 2.24
5153 5575 5.046950 CCATTCGAAAATTTTACTTCCCCCA 60.047 40.000 0.00 0.00 0.00 4.96
5155 5577 4.471548 TCGAAAATTTTACTTCCCCCACA 58.528 39.130 2.75 0.00 0.00 4.17
5157 5579 6.246919 TCGAAAATTTTACTTCCCCCACATA 58.753 36.000 2.75 0.00 0.00 2.29
5175 5597 6.526325 CCCACATAAAAATATTGTGACACACG 59.474 38.462 8.05 0.00 42.59 4.49
5181 5603 4.829064 AATATTGTGACACACGTTTGCT 57.171 36.364 8.05 0.00 37.14 3.91
5183 5605 5.933187 ATATTGTGACACACGTTTGCTTA 57.067 34.783 8.05 0.00 37.14 3.09
5185 5607 5.933187 ATTGTGACACACGTTTGCTTATA 57.067 34.783 8.05 0.00 37.14 0.98
5186 5608 4.983215 TGTGACACACGTTTGCTTATAG 57.017 40.909 3.56 0.00 37.14 1.31
5187 5609 3.185594 TGTGACACACGTTTGCTTATAGC 59.814 43.478 3.56 0.00 38.35 2.97
5188 5610 2.739913 TGACACACGTTTGCTTATAGCC 59.260 45.455 0.61 0.00 41.51 3.93
5189 5611 3.000727 GACACACGTTTGCTTATAGCCT 58.999 45.455 0.61 0.00 41.51 4.58
5190 5612 2.742053 ACACACGTTTGCTTATAGCCTG 59.258 45.455 0.61 0.00 41.51 4.85
5191 5613 2.742053 CACACGTTTGCTTATAGCCTGT 59.258 45.455 0.00 0.00 41.51 4.00
5192 5614 3.188460 CACACGTTTGCTTATAGCCTGTT 59.812 43.478 0.00 0.00 41.51 3.16
5193 5615 3.818773 ACACGTTTGCTTATAGCCTGTTT 59.181 39.130 0.00 0.00 41.51 2.83
5194 5616 4.158384 CACGTTTGCTTATAGCCTGTTTG 58.842 43.478 0.00 0.00 41.51 2.93
5195 5617 3.171277 CGTTTGCTTATAGCCTGTTTGC 58.829 45.455 0.00 0.00 41.51 3.68
5196 5618 3.365868 CGTTTGCTTATAGCCTGTTTGCA 60.366 43.478 0.00 0.00 41.51 4.08
5197 5619 4.675146 CGTTTGCTTATAGCCTGTTTGCAT 60.675 41.667 0.00 0.00 41.51 3.96
5198 5620 4.374843 TTGCTTATAGCCTGTTTGCATG 57.625 40.909 0.00 0.00 41.51 4.06
5199 5621 3.619419 TGCTTATAGCCTGTTTGCATGA 58.381 40.909 0.00 0.00 41.51 3.07
5200 5622 4.015764 TGCTTATAGCCTGTTTGCATGAA 58.984 39.130 0.00 0.00 41.51 2.57
5201 5623 4.646040 TGCTTATAGCCTGTTTGCATGAAT 59.354 37.500 0.00 0.00 41.51 2.57
5207 5629 4.813027 AGCCTGTTTGCATGAATACAAAG 58.187 39.130 0.00 0.00 36.50 2.77
5216 5638 8.558700 GTTTGCATGAATACAAAGAAAATTGGT 58.441 29.630 0.00 0.00 36.50 3.67
5250 5677 4.568072 TGTGGTTGTGATTATAGCCTGT 57.432 40.909 0.00 0.00 0.00 4.00
5251 5678 4.917385 TGTGGTTGTGATTATAGCCTGTT 58.083 39.130 0.00 0.00 0.00 3.16
5275 5702 3.927142 GCATGTATGGGTACTCGCTATTC 59.073 47.826 0.00 0.00 0.00 1.75
5280 5707 7.476540 TGTATGGGTACTCGCTATTCATATT 57.523 36.000 0.00 0.00 0.00 1.28
5282 5709 9.027202 TGTATGGGTACTCGCTATTCATATTTA 57.973 33.333 0.00 0.00 0.00 1.40
5338 5765 6.535150 TGAAGATACGAAATACCAAGAAGCTG 59.465 38.462 0.00 0.00 0.00 4.24
5346 5773 1.901591 ACCAAGAAGCTGGATGTGTG 58.098 50.000 0.00 0.00 38.96 3.82
5348 5775 2.371841 ACCAAGAAGCTGGATGTGTGTA 59.628 45.455 0.00 0.00 38.96 2.90
5351 5778 3.601443 AGAAGCTGGATGTGTGTAGTC 57.399 47.619 0.00 0.00 0.00 2.59
5352 5779 3.169099 AGAAGCTGGATGTGTGTAGTCT 58.831 45.455 0.00 0.00 0.00 3.24
5358 5785 4.331168 GCTGGATGTGTGTAGTCTCAATTC 59.669 45.833 0.00 0.00 0.00 2.17
5361 5788 4.800993 GGATGTGTGTAGTCTCAATTCTCG 59.199 45.833 0.00 0.00 0.00 4.04
5372 5799 5.578727 AGTCTCAATTCTCGTGCAATTCTAC 59.421 40.000 0.00 0.00 0.00 2.59
5377 5804 4.725556 TTCTCGTGCAATTCTACAACAC 57.274 40.909 0.00 0.00 0.00 3.32
5380 5807 1.070242 CGTGCAATTCTACAACACGCA 60.070 47.619 0.63 0.00 46.11 5.24
5384 5811 3.004210 TGCAATTCTACAACACGCAACAT 59.996 39.130 0.00 0.00 0.00 2.71
5386 5813 4.613622 GCAATTCTACAACACGCAACATCT 60.614 41.667 0.00 0.00 0.00 2.90
5387 5814 4.668576 ATTCTACAACACGCAACATCTG 57.331 40.909 0.00 0.00 0.00 2.90
5388 5815 3.106242 TCTACAACACGCAACATCTGT 57.894 42.857 0.00 0.00 0.00 3.41
5389 5816 4.245845 TCTACAACACGCAACATCTGTA 57.754 40.909 0.00 0.00 0.00 2.74
5391 5818 3.602390 ACAACACGCAACATCTGTAAC 57.398 42.857 0.00 0.00 0.00 2.50
5392 5819 3.202906 ACAACACGCAACATCTGTAACT 58.797 40.909 0.00 0.00 0.00 2.24
5393 5820 4.373527 ACAACACGCAACATCTGTAACTA 58.626 39.130 0.00 0.00 0.00 2.24
5394 5821 4.210537 ACAACACGCAACATCTGTAACTAC 59.789 41.667 0.00 0.00 0.00 2.73
5408 5835 6.734104 CTGTAACTACAGTCTACGTAACCT 57.266 41.667 8.46 0.00 46.51 3.50
5417 5844 4.625742 CAGTCTACGTAACCTGTCCAATTG 59.374 45.833 11.26 0.00 0.00 2.32
5449 5876 5.293079 GGCATTCTTTAACAAACTGTTTGCA 59.707 36.000 28.02 16.26 44.39 4.08
5450 5877 6.184706 GCATTCTTTAACAAACTGTTTGCAC 58.815 36.000 28.02 6.52 44.39 4.57
5451 5878 6.035975 GCATTCTTTAACAAACTGTTTGCACT 59.964 34.615 28.02 17.25 44.39 4.40
5452 5879 6.942886 TTCTTTAACAAACTGTTTGCACTG 57.057 33.333 28.02 16.51 44.39 3.66
5453 5880 6.019779 TCTTTAACAAACTGTTTGCACTGT 57.980 33.333 28.02 10.57 44.39 3.55
5455 5882 2.939460 ACAAACTGTTTGCACTGTCC 57.061 45.000 28.02 0.00 44.39 4.02
5456 5883 2.166829 ACAAACTGTTTGCACTGTCCA 58.833 42.857 28.02 0.00 44.39 4.02
5457 5884 2.560542 ACAAACTGTTTGCACTGTCCAA 59.439 40.909 28.02 0.00 44.39 3.53
5458 5885 3.006323 ACAAACTGTTTGCACTGTCCAAA 59.994 39.130 28.02 0.00 44.39 3.28
5459 5886 4.183101 CAAACTGTTTGCACTGTCCAAAT 58.817 39.130 19.13 0.00 34.16 2.32
5460 5887 3.715628 ACTGTTTGCACTGTCCAAATC 57.284 42.857 0.00 0.00 34.99 2.17
5461 5888 3.290710 ACTGTTTGCACTGTCCAAATCT 58.709 40.909 0.00 0.00 34.99 2.40
5462 5889 3.701040 ACTGTTTGCACTGTCCAAATCTT 59.299 39.130 0.00 0.00 34.99 2.40
5463 5890 4.202050 ACTGTTTGCACTGTCCAAATCTTC 60.202 41.667 0.00 0.00 34.99 2.87
5464 5891 3.953612 TGTTTGCACTGTCCAAATCTTCT 59.046 39.130 0.00 0.00 34.99 2.85
5465 5892 4.202040 TGTTTGCACTGTCCAAATCTTCTG 60.202 41.667 0.00 0.00 34.99 3.02
5466 5893 2.507484 TGCACTGTCCAAATCTTCTGG 58.493 47.619 0.00 0.00 35.05 3.86
5467 5894 2.158623 TGCACTGTCCAAATCTTCTGGT 60.159 45.455 0.00 0.00 35.30 4.00
5468 5895 2.887152 GCACTGTCCAAATCTTCTGGTT 59.113 45.455 0.00 0.00 35.30 3.67
5469 5896 4.072131 GCACTGTCCAAATCTTCTGGTTA 58.928 43.478 0.00 0.00 35.30 2.85
5470 5897 4.083271 GCACTGTCCAAATCTTCTGGTTAC 60.083 45.833 0.00 0.00 35.30 2.50
5471 5898 5.308825 CACTGTCCAAATCTTCTGGTTACT 58.691 41.667 0.00 0.00 35.30 2.24
5472 5899 5.765182 CACTGTCCAAATCTTCTGGTTACTT 59.235 40.000 0.00 0.00 35.30 2.24
5473 5900 5.765182 ACTGTCCAAATCTTCTGGTTACTTG 59.235 40.000 0.00 0.00 35.30 3.16
5474 5901 5.690865 TGTCCAAATCTTCTGGTTACTTGT 58.309 37.500 0.00 0.00 35.30 3.16
5475 5902 6.833041 TGTCCAAATCTTCTGGTTACTTGTA 58.167 36.000 0.00 0.00 35.30 2.41
5541 6027 7.715249 TGAAGCTCCTAATTTGCGTATTCTTAT 59.285 33.333 0.00 0.00 0.00 1.73
5553 6039 5.926542 TGCGTATTCTTATGGTGAGATTAGC 59.073 40.000 0.00 0.00 0.00 3.09
5630 6117 6.708285 AGAGGATCGCTTTAGTTAGGAAAAA 58.292 36.000 0.00 0.00 42.67 1.94
5636 6134 5.299782 TCGCTTTAGTTAGGAAAAAGGCAAA 59.700 36.000 0.00 0.00 32.14 3.68
5642 6140 0.673985 AGGAAAAAGGCAAAGCGACC 59.326 50.000 0.00 0.00 0.00 4.79
5675 6173 3.706698 CAAAGATGGCATTGAGCTGATG 58.293 45.455 0.00 0.00 44.79 3.07
5683 6181 2.159421 GCATTGAGCTGATGACCACTTG 60.159 50.000 10.14 0.00 41.15 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.679032 GCTACCACGGGAGAGCAAAAT 60.679 52.381 0.00 0.00 36.04 1.82
6 7 1.682684 ACAGGCTACCACGGGAGAG 60.683 63.158 0.00 0.00 0.00 3.20
17 18 1.079405 GCTGGCGTAACACAGGCTA 60.079 57.895 0.00 0.00 38.14 3.93
60 61 1.126296 GACAGCTAGAAAACCGCGAAC 59.874 52.381 8.23 0.00 0.00 3.95
65 67 1.068474 CACCGACAGCTAGAAAACCG 58.932 55.000 0.00 0.00 0.00 4.44
229 236 3.239941 CGCTAAACTTGTAGATCGAACCG 59.760 47.826 0.00 0.00 0.00 4.44
241 248 2.225727 GTGAGAAACCCCGCTAAACTTG 59.774 50.000 0.00 0.00 0.00 3.16
245 252 3.637184 GGTGAGAAACCCCGCTAAA 57.363 52.632 0.00 0.00 44.02 1.85
311 320 1.134037 AGAACTTACCAACCGCACCAA 60.134 47.619 0.00 0.00 0.00 3.67
312 321 0.470766 AGAACTTACCAACCGCACCA 59.529 50.000 0.00 0.00 0.00 4.17
357 366 1.278637 CAGACACAAAACGGCGTCC 59.721 57.895 15.17 0.00 0.00 4.79
373 382 2.425312 ACAAGCAGTAGATCTCGTCCAG 59.575 50.000 0.00 0.00 0.00 3.86
407 416 4.209703 GTAGATCTACTGACGGAGACGAAG 59.790 50.000 23.12 0.00 43.99 3.79
451 463 8.188139 GTCTCAGAATCAAAACAAAACCTGTAA 58.812 33.333 0.00 0.00 37.23 2.41
483 495 1.127567 ACCTAGCAGCAGACCCACAA 61.128 55.000 0.00 0.00 0.00 3.33
546 561 5.983118 ACTACCAACAAAAACATAAGCAAGC 59.017 36.000 0.00 0.00 0.00 4.01
547 562 8.419076 AAACTACCAACAAAAACATAAGCAAG 57.581 30.769 0.00 0.00 0.00 4.01
548 563 9.303537 GTAAACTACCAACAAAAACATAAGCAA 57.696 29.630 0.00 0.00 0.00 3.91
555 570 5.106237 ACGCTGTAAACTACCAACAAAAACA 60.106 36.000 0.00 0.00 0.00 2.83
620 635 4.062991 GTGTTGTTCGATTAGGTTGGTCT 58.937 43.478 0.00 0.00 0.00 3.85
647 662 6.613233 AGAGACAAACGTAGAATCTACACTG 58.387 40.000 19.16 14.13 0.00 3.66
661 676 4.349663 TTTGGAACACAAGAGACAAACG 57.650 40.909 0.00 0.00 40.82 3.60
663 678 5.975693 AGTTTTGGAACACAAGAGACAAA 57.024 34.783 0.00 0.00 40.82 2.83
665 680 7.455641 TTTAAGTTTTGGAACACAAGAGACA 57.544 32.000 0.00 0.00 40.82 3.41
666 681 8.926715 ATTTTAAGTTTTGGAACACAAGAGAC 57.073 30.769 0.00 0.00 40.82 3.36
667 682 9.581099 GAATTTTAAGTTTTGGAACACAAGAGA 57.419 29.630 0.00 0.00 40.82 3.10
668 683 8.817100 GGAATTTTAAGTTTTGGAACACAAGAG 58.183 33.333 0.00 0.00 40.82 2.85
672 687 7.616313 AGTGGAATTTTAAGTTTTGGAACACA 58.384 30.769 0.00 0.00 39.29 3.72
674 689 7.269316 GGAGTGGAATTTTAAGTTTTGGAACA 58.731 34.615 0.00 0.00 38.26 3.18
675 690 6.419710 CGGAGTGGAATTTTAAGTTTTGGAAC 59.580 38.462 0.00 0.00 35.97 3.62
676 691 6.461788 CCGGAGTGGAATTTTAAGTTTTGGAA 60.462 38.462 0.00 0.00 42.00 3.53
677 692 5.010213 CCGGAGTGGAATTTTAAGTTTTGGA 59.990 40.000 0.00 0.00 42.00 3.53
678 693 5.221362 ACCGGAGTGGAATTTTAAGTTTTGG 60.221 40.000 9.46 0.00 42.00 3.28
679 694 5.838529 ACCGGAGTGGAATTTTAAGTTTTG 58.161 37.500 9.46 0.00 42.00 2.44
680 695 6.474140 AACCGGAGTGGAATTTTAAGTTTT 57.526 33.333 9.46 0.00 42.00 2.43
681 696 6.474140 AAACCGGAGTGGAATTTTAAGTTT 57.526 33.333 9.46 0.00 42.00 2.66
682 697 7.668469 AGATAAACCGGAGTGGAATTTTAAGTT 59.332 33.333 9.46 0.00 42.00 2.66
683 698 7.173032 AGATAAACCGGAGTGGAATTTTAAGT 58.827 34.615 9.46 0.00 42.00 2.24
687 702 7.116736 ACATAGATAAACCGGAGTGGAATTTT 58.883 34.615 9.46 0.00 42.00 1.82
693 708 9.720769 ATATAAAACATAGATAAACCGGAGTGG 57.279 33.333 9.46 0.00 46.41 4.00
714 729 7.720957 CAGGTTCAGGTCAAATCCATGATATAA 59.279 37.037 0.00 0.00 0.00 0.98
775 793 9.717892 CATGAACAGATTGTTTGATCAGATAAG 57.282 33.333 0.00 0.00 41.28 1.73
786 804 9.825972 CGTAAAGATAACATGAACAGATTGTTT 57.174 29.630 0.00 0.00 41.28 2.83
789 807 7.409697 CCCGTAAAGATAACATGAACAGATTG 58.590 38.462 0.00 0.00 0.00 2.67
812 830 2.704065 TGGTAAGGTATAAGAGCAGCCC 59.296 50.000 0.00 0.00 0.00 5.19
813 831 4.417426 TTGGTAAGGTATAAGAGCAGCC 57.583 45.455 0.00 0.00 0.00 4.85
845 863 7.755373 ACAAAAAGAAGTGCTTCAAGTTAGAAC 59.245 33.333 13.58 0.00 41.84 3.01
853 871 6.266168 TCTGAACAAAAAGAAGTGCTTCAA 57.734 33.333 13.58 0.00 41.84 2.69
907 938 8.322091 AGCTATTCAGTACAAAAAGTAGACCAT 58.678 33.333 0.00 0.00 32.19 3.55
942 973 4.466828 CTGAACGCTAAAACCTGTGAATG 58.533 43.478 0.00 0.00 0.00 2.67
974 1005 6.419980 TTTTGCACAAAACCTTTGATGAAG 57.580 33.333 4.47 0.00 35.57 3.02
1104 1135 1.935327 GAGGGACGTAAGAGCTGCGT 61.935 60.000 0.00 0.00 41.81 5.24
1276 1307 3.834799 ACCTACGCCAGCGCTACC 61.835 66.667 10.99 2.41 44.19 3.18
1277 1308 2.582498 CACCTACGCCAGCGCTAC 60.582 66.667 10.99 4.19 44.19 3.58
1341 1372 4.760047 CGGGAGTTCCAGCCACCG 62.760 72.222 0.00 0.00 37.91 4.94
1626 1657 1.358787 TCCCTGCCTCCAATGACAATT 59.641 47.619 0.00 0.00 0.00 2.32
2000 2033 7.174253 ACTGTGTGTTAATTTGGTTATCGTGAT 59.826 33.333 0.00 0.00 0.00 3.06
2029 2062 8.406716 CAACGATCACTTGTTAATTTGTTTACG 58.593 33.333 0.00 0.00 0.00 3.18
2066 2099 4.033009 TCATAGAATGGGCAGAGAGTGAA 58.967 43.478 0.00 0.00 0.00 3.18
2107 2329 2.043411 CACAATGTACGTTGCAAGTGC 58.957 47.619 24.53 4.82 42.50 4.40
2117 2339 2.893637 AGGCTTCTAGCACAATGTACG 58.106 47.619 0.67 0.00 44.75 3.67
2229 2453 3.070878 TCCACTACTTGACAACATGCTGA 59.929 43.478 2.44 0.00 0.00 4.26
2250 2474 7.552687 TGTTCCCTTCACAATGTATCACTATTC 59.447 37.037 0.00 0.00 0.00 1.75
2417 2724 7.418827 CCATCCAGTAATTCATGGCCATTAAAA 60.419 37.037 17.92 11.43 36.47 1.52
2429 2736 3.088532 GCAACACCCATCCAGTAATTCA 58.911 45.455 0.00 0.00 0.00 2.57
2465 2772 9.606631 ACATTTTACAAGGCTTGTTATTGAAAA 57.393 25.926 35.13 30.33 42.22 2.29
2661 2968 1.638070 TGTGGCTCAAACCCCATATCA 59.362 47.619 0.00 0.00 32.95 2.15
2760 3067 7.354751 AGAGAACCATACTTGTATCTCCTTC 57.645 40.000 0.00 0.00 35.12 3.46
2806 3113 2.821969 GCACCTGGGGCATATAAGAATG 59.178 50.000 17.87 0.00 0.00 2.67
2807 3114 2.718609 AGCACCTGGGGCATATAAGAAT 59.281 45.455 25.12 0.00 0.00 2.40
2823 3130 6.920758 TGATAACACAACATTAACAAAGCACC 59.079 34.615 0.00 0.00 0.00 5.01
2870 3177 2.286935 ATGAACCCCCACTACCTCAT 57.713 50.000 0.00 0.00 0.00 2.90
2900 3208 2.472029 TGCCCAGGTTGAAAGGAAAAA 58.528 42.857 0.00 0.00 0.00 1.94
2922 3230 5.357742 AGGAAGGAAAAACAGCAACATTT 57.642 34.783 0.00 0.00 0.00 2.32
2926 3234 7.595130 CAGTAATTAGGAAGGAAAAACAGCAAC 59.405 37.037 0.00 0.00 0.00 4.17
2938 3246 7.595130 GCAACTTGAAAACAGTAATTAGGAAGG 59.405 37.037 0.00 0.00 0.00 3.46
3084 3395 9.143631 CTGCCCTATTCAACTTTAAATGAAAAG 57.856 33.333 8.01 0.00 38.88 2.27
3088 3399 7.775053 AACTGCCCTATTCAACTTTAAATGA 57.225 32.000 0.00 0.00 0.00 2.57
3106 3417 1.135774 GGCGCAAAACTAGTAACTGCC 60.136 52.381 10.83 12.17 0.00 4.85
3114 3425 2.159627 AGAAATGACGGCGCAAAACTAG 59.840 45.455 10.83 0.00 0.00 2.57
3118 3429 2.500509 AAAGAAATGACGGCGCAAAA 57.499 40.000 10.83 0.00 0.00 2.44
3483 3803 8.050778 AGTCTACTGAGAAGTCATGAACTAAG 57.949 38.462 0.00 2.98 37.17 2.18
3517 3838 8.138712 AGAATGGTTCGCAATAGTAAACAAAAA 58.861 29.630 0.00 0.00 34.02 1.94
3518 3839 7.593273 CAGAATGGTTCGCAATAGTAAACAAAA 59.407 33.333 0.00 0.00 34.02 2.44
3519 3840 7.081349 CAGAATGGTTCGCAATAGTAAACAAA 58.919 34.615 0.00 0.00 34.02 2.83
3520 3841 6.607689 CAGAATGGTTCGCAATAGTAAACAA 58.392 36.000 0.00 0.00 34.02 2.83
3521 3842 6.176975 CAGAATGGTTCGCAATAGTAAACA 57.823 37.500 0.00 0.00 34.02 2.83
3547 3868 5.398169 CACGCAAATTAACCAAGCAAGATA 58.602 37.500 0.00 0.00 0.00 1.98
3554 3875 2.671070 GCTCCCACGCAAATTAACCAAG 60.671 50.000 0.00 0.00 0.00 3.61
3568 3889 2.283101 TGTTGGCCATGCTCCCAC 60.283 61.111 6.09 0.00 0.00 4.61
3729 4103 4.456535 TGCAGTTGCCAAACTAGACTTAA 58.543 39.130 0.00 0.00 45.07 1.85
3782 4169 4.075963 AGTTAAGAACTAAACGGTGCCA 57.924 40.909 0.00 0.00 40.69 4.92
3845 4234 4.013267 ACAAGAGAACAGAGGTTGATGG 57.987 45.455 0.00 0.00 37.36 3.51
3866 4257 6.772716 AGACCAAAGTAAGAGAATTCTGCAAA 59.227 34.615 14.00 0.00 32.79 3.68
3867 4258 6.299141 AGACCAAAGTAAGAGAATTCTGCAA 58.701 36.000 14.00 0.00 32.79 4.08
3992 4383 3.813166 TGTAAAGGTAAACACAGCTCTGC 59.187 43.478 0.00 0.00 0.00 4.26
4019 4410 2.556622 GCGTGAAGAAAGGGAATTCCAA 59.443 45.455 25.67 0.00 38.24 3.53
4032 4425 8.576442 TGTTGATGATAGATATTAGCGTGAAGA 58.424 33.333 0.00 0.00 0.00 2.87
4033 4426 8.748380 TGTTGATGATAGATATTAGCGTGAAG 57.252 34.615 0.00 0.00 0.00 3.02
4052 4449 2.821969 GACCCAGCACTTTGATGTTGAT 59.178 45.455 0.00 0.00 32.95 2.57
4115 4514 7.129457 ACTCATGGAAAAGCAGACAGATATA 57.871 36.000 0.00 0.00 0.00 0.86
4132 4531 4.841422 AGGAAGACAGAATCAACTCATGG 58.159 43.478 0.00 0.00 0.00 3.66
4289 4691 2.994995 ACGTGGGCGACATCTGGA 60.995 61.111 0.00 0.00 42.00 3.86
4334 4736 3.541996 ATGCGGTGAACATAGTCATCA 57.458 42.857 0.00 0.00 0.00 3.07
4358 4760 1.734655 TCCCAGCTCTTCCAGTTCTT 58.265 50.000 0.00 0.00 0.00 2.52
4553 4955 0.605319 GTCCACCAAATCGAGCACCA 60.605 55.000 0.00 0.00 0.00 4.17
4622 5024 4.317444 CCACCACCACCGCCGTAA 62.317 66.667 0.00 0.00 0.00 3.18
4632 5034 4.710167 GTACCCGCCACCACCACC 62.710 72.222 0.00 0.00 0.00 4.61
4646 5054 1.761500 AACCTCCACCACCACCGTAC 61.761 60.000 0.00 0.00 0.00 3.67
4676 5084 2.360726 TCCCACGAGCTAGACGCA 60.361 61.111 0.00 0.00 42.61 5.24
4711 5124 6.208402 TCCATCGGTTTCATTTCAATTCTCAA 59.792 34.615 0.00 0.00 0.00 3.02
4997 5417 7.172875 CAGAAAGGATCCAATCACTATTGCTAG 59.827 40.741 15.82 0.00 41.06 3.42
5021 5443 4.677584 AGCGATAAAACAGTAGAGAGCAG 58.322 43.478 0.00 0.00 0.00 4.24
5022 5444 4.720649 AGCGATAAAACAGTAGAGAGCA 57.279 40.909 0.00 0.00 0.00 4.26
5023 5445 4.260011 GCAAGCGATAAAACAGTAGAGAGC 60.260 45.833 0.00 0.00 0.00 4.09
5024 5446 4.268884 GGCAAGCGATAAAACAGTAGAGAG 59.731 45.833 0.00 0.00 0.00 3.20
5025 5447 4.081642 AGGCAAGCGATAAAACAGTAGAGA 60.082 41.667 0.00 0.00 0.00 3.10
5029 5451 2.418628 GCAGGCAAGCGATAAAACAGTA 59.581 45.455 0.00 0.00 0.00 2.74
5067 5489 2.596346 TGATTCCAGAAGGCAAGCAAA 58.404 42.857 0.00 0.00 33.74 3.68
5089 5511 8.917088 CAGGATTTCACAAGGTTATATTTGGAT 58.083 33.333 0.00 0.00 0.00 3.41
5090 5512 7.341769 CCAGGATTTCACAAGGTTATATTTGGA 59.658 37.037 0.00 0.00 0.00 3.53
5091 5513 7.341769 TCCAGGATTTCACAAGGTTATATTTGG 59.658 37.037 0.00 0.00 0.00 3.28
5092 5514 8.292444 TCCAGGATTTCACAAGGTTATATTTG 57.708 34.615 0.00 0.00 0.00 2.32
5093 5515 8.917088 CATCCAGGATTTCACAAGGTTATATTT 58.083 33.333 0.00 0.00 0.00 1.40
5094 5516 7.506938 CCATCCAGGATTTCACAAGGTTATATT 59.493 37.037 0.00 0.00 41.22 1.28
5095 5517 7.006509 CCATCCAGGATTTCACAAGGTTATAT 58.993 38.462 0.00 0.00 41.22 0.86
5096 5518 6.364701 CCATCCAGGATTTCACAAGGTTATA 58.635 40.000 0.00 0.00 41.22 0.98
5097 5519 5.203528 CCATCCAGGATTTCACAAGGTTAT 58.796 41.667 0.00 0.00 41.22 1.89
5098 5520 4.599041 CCATCCAGGATTTCACAAGGTTA 58.401 43.478 0.00 0.00 41.22 2.85
5099 5521 3.434309 CCATCCAGGATTTCACAAGGTT 58.566 45.455 0.00 0.00 41.22 3.50
5100 5522 2.885554 GCCATCCAGGATTTCACAAGGT 60.886 50.000 0.00 0.00 41.22 3.50
5101 5523 1.753073 GCCATCCAGGATTTCACAAGG 59.247 52.381 0.00 0.00 41.22 3.61
5102 5524 1.753073 GGCCATCCAGGATTTCACAAG 59.247 52.381 0.00 0.00 41.22 3.16
5103 5525 1.358787 AGGCCATCCAGGATTTCACAA 59.641 47.619 5.01 0.00 41.22 3.33
5104 5526 1.002069 AGGCCATCCAGGATTTCACA 58.998 50.000 5.01 0.00 41.22 3.58
5105 5527 1.213926 AGAGGCCATCCAGGATTTCAC 59.786 52.381 5.01 0.00 41.22 3.18
5106 5528 1.600058 AGAGGCCATCCAGGATTTCA 58.400 50.000 5.01 0.00 41.22 2.69
5107 5529 2.744352 AAGAGGCCATCCAGGATTTC 57.256 50.000 5.01 0.00 41.22 2.17
5108 5530 2.358615 GGAAAGAGGCCATCCAGGATTT 60.359 50.000 5.01 0.00 41.22 2.17
5109 5531 1.216427 GGAAAGAGGCCATCCAGGATT 59.784 52.381 5.01 0.00 41.22 3.01
5110 5532 0.849417 GGAAAGAGGCCATCCAGGAT 59.151 55.000 5.01 0.00 41.22 3.24
5111 5533 1.281925 GGGAAAGAGGCCATCCAGGA 61.282 60.000 5.01 0.00 41.22 3.86
5112 5534 1.228510 GGGAAAGAGGCCATCCAGG 59.771 63.158 5.01 0.00 41.84 4.45
5113 5535 0.554792 ATGGGAAAGAGGCCATCCAG 59.445 55.000 5.01 0.00 34.82 3.86
5114 5536 1.009997 AATGGGAAAGAGGCCATCCA 58.990 50.000 5.01 3.21 34.82 3.41
5122 5544 9.129209 GAAGTAAAATTTTCGAATGGGAAAGAG 57.871 33.333 6.72 0.00 37.24 2.85
5128 5550 5.416083 GGGGAAGTAAAATTTTCGAATGGG 58.584 41.667 6.72 0.00 0.00 4.00
5129 5551 5.046950 TGGGGGAAGTAAAATTTTCGAATGG 60.047 40.000 6.72 0.00 0.00 3.16
5130 5552 5.867174 GTGGGGGAAGTAAAATTTTCGAATG 59.133 40.000 6.72 0.00 0.00 2.67
5131 5553 5.540719 TGTGGGGGAAGTAAAATTTTCGAAT 59.459 36.000 6.72 0.00 0.00 3.34
5147 5569 6.153680 GTGTCACAATATTTTTATGTGGGGGA 59.846 38.462 0.00 0.00 43.53 4.81
5153 5575 8.963130 CAAACGTGTGTCACAATATTTTTATGT 58.037 29.630 7.38 0.00 33.40 2.29
5155 5577 7.865385 AGCAAACGTGTGTCACAATATTTTTAT 59.135 29.630 7.38 0.00 33.40 1.40
5157 5579 6.039616 AGCAAACGTGTGTCACAATATTTTT 58.960 32.000 7.38 0.57 33.40 1.94
5164 5586 4.319190 GCTATAAGCAAACGTGTGTCACAA 60.319 41.667 7.38 0.00 41.89 3.33
5175 5597 4.173036 TGCAAACAGGCTATAAGCAAAC 57.827 40.909 0.78 0.00 44.75 2.93
5181 5603 7.637631 TTGTATTCATGCAAACAGGCTATAA 57.362 32.000 0.00 0.00 34.04 0.98
5183 5605 6.377996 TCTTTGTATTCATGCAAACAGGCTAT 59.622 34.615 0.00 0.00 37.44 2.97
5185 5607 4.523943 TCTTTGTATTCATGCAAACAGGCT 59.476 37.500 0.00 0.00 37.44 4.58
5186 5608 4.808558 TCTTTGTATTCATGCAAACAGGC 58.191 39.130 0.00 0.00 37.44 4.85
5187 5609 7.712264 TTTTCTTTGTATTCATGCAAACAGG 57.288 32.000 0.00 0.00 37.44 4.00
5188 5610 9.588774 CAATTTTCTTTGTATTCATGCAAACAG 57.411 29.630 0.00 0.00 37.44 3.16
5189 5611 8.557864 CCAATTTTCTTTGTATTCATGCAAACA 58.442 29.630 0.00 0.00 37.44 2.83
5190 5612 8.558700 ACCAATTTTCTTTGTATTCATGCAAAC 58.441 29.630 0.00 0.00 37.44 2.93
5191 5613 8.557864 CACCAATTTTCTTTGTATTCATGCAAA 58.442 29.630 0.00 3.45 39.48 3.68
5192 5614 7.714377 ACACCAATTTTCTTTGTATTCATGCAA 59.286 29.630 0.00 0.00 0.00 4.08
5193 5615 7.215789 ACACCAATTTTCTTTGTATTCATGCA 58.784 30.769 0.00 0.00 0.00 3.96
5194 5616 7.384660 TGACACCAATTTTCTTTGTATTCATGC 59.615 33.333 0.00 0.00 0.00 4.06
5195 5617 8.815141 TGACACCAATTTTCTTTGTATTCATG 57.185 30.769 0.00 0.00 0.00 3.07
5197 5619 9.258826 CAATGACACCAATTTTCTTTGTATTCA 57.741 29.630 0.00 0.00 0.00 2.57
5198 5620 8.711457 CCAATGACACCAATTTTCTTTGTATTC 58.289 33.333 0.00 0.00 0.00 1.75
5199 5621 8.428063 TCCAATGACACCAATTTTCTTTGTATT 58.572 29.630 0.00 0.00 0.00 1.89
5200 5622 7.961351 TCCAATGACACCAATTTTCTTTGTAT 58.039 30.769 0.00 0.00 0.00 2.29
5201 5623 7.353414 TCCAATGACACCAATTTTCTTTGTA 57.647 32.000 0.00 0.00 0.00 2.41
5207 5629 7.354257 CACAAAATCCAATGACACCAATTTTC 58.646 34.615 0.00 0.00 0.00 2.29
5216 5638 4.403752 TCACAACCACAAAATCCAATGACA 59.596 37.500 0.00 0.00 0.00 3.58
5250 5677 2.093181 AGCGAGTACCCATACATGCAAA 60.093 45.455 0.00 0.00 36.61 3.68
5251 5678 1.484653 AGCGAGTACCCATACATGCAA 59.515 47.619 0.00 0.00 36.61 4.08
5275 5702 8.943002 TGACTGCATGCTGATATTCTAAATATG 58.057 33.333 28.74 0.00 0.00 1.78
5280 5707 5.922053 AGTGACTGCATGCTGATATTCTAA 58.078 37.500 28.74 0.00 0.00 2.10
5282 5709 4.418973 AGTGACTGCATGCTGATATTCT 57.581 40.909 28.74 15.80 0.00 2.40
5311 5738 6.312918 GCTTCTTGGTATTTCGTATCTTCACA 59.687 38.462 0.00 0.00 0.00 3.58
5312 5739 6.535508 AGCTTCTTGGTATTTCGTATCTTCAC 59.464 38.462 0.00 0.00 0.00 3.18
5315 5742 5.817816 CCAGCTTCTTGGTATTTCGTATCTT 59.182 40.000 0.00 0.00 33.38 2.40
5316 5743 5.128827 TCCAGCTTCTTGGTATTTCGTATCT 59.871 40.000 0.00 0.00 39.35 1.98
5317 5744 5.357257 TCCAGCTTCTTGGTATTTCGTATC 58.643 41.667 0.00 0.00 39.35 2.24
5318 5745 5.353394 TCCAGCTTCTTGGTATTTCGTAT 57.647 39.130 0.00 0.00 39.35 3.06
5319 5746 4.811969 TCCAGCTTCTTGGTATTTCGTA 57.188 40.909 0.00 0.00 39.35 3.43
5320 5747 3.695830 TCCAGCTTCTTGGTATTTCGT 57.304 42.857 0.00 0.00 39.35 3.85
5321 5748 3.941483 ACATCCAGCTTCTTGGTATTTCG 59.059 43.478 0.00 0.00 39.35 3.46
5323 5750 4.460382 CACACATCCAGCTTCTTGGTATTT 59.540 41.667 0.00 0.00 39.35 1.40
5324 5751 4.012374 CACACATCCAGCTTCTTGGTATT 58.988 43.478 0.00 0.00 39.35 1.89
5325 5752 3.009473 ACACACATCCAGCTTCTTGGTAT 59.991 43.478 0.00 0.00 39.35 2.73
5338 5765 4.800993 CGAGAATTGAGACTACACACATCC 59.199 45.833 0.00 0.00 0.00 3.51
5346 5773 5.578727 AGAATTGCACGAGAATTGAGACTAC 59.421 40.000 0.00 0.00 0.00 2.73
5348 5775 4.573900 AGAATTGCACGAGAATTGAGACT 58.426 39.130 0.00 0.00 0.00 3.24
5351 5778 5.784750 TGTAGAATTGCACGAGAATTGAG 57.215 39.130 0.00 0.00 0.00 3.02
5352 5779 5.468409 TGTTGTAGAATTGCACGAGAATTGA 59.532 36.000 0.00 0.00 0.00 2.57
5361 5788 2.679355 TGCGTGTTGTAGAATTGCAC 57.321 45.000 0.00 0.00 0.00 4.57
5372 5799 3.878086 AGTTACAGATGTTGCGTGTTG 57.122 42.857 0.00 0.00 0.00 3.33
5386 5813 5.997746 ACAGGTTACGTAGACTGTAGTTACA 59.002 40.000 24.11 0.00 41.95 2.41
5387 5814 6.402658 GGACAGGTTACGTAGACTGTAGTTAC 60.403 46.154 24.90 16.03 43.61 2.50
5388 5815 5.643777 GGACAGGTTACGTAGACTGTAGTTA 59.356 44.000 24.90 0.00 43.61 2.24
5389 5816 4.457257 GGACAGGTTACGTAGACTGTAGTT 59.543 45.833 24.90 10.19 43.61 2.24
5391 5818 4.005650 TGGACAGGTTACGTAGACTGTAG 58.994 47.826 24.90 7.98 43.61 2.74
5392 5819 4.019792 TGGACAGGTTACGTAGACTGTA 57.980 45.455 24.90 13.77 43.61 2.74
5393 5820 2.867624 TGGACAGGTTACGTAGACTGT 58.132 47.619 25.04 25.04 45.99 3.55
5394 5821 3.928727 TTGGACAGGTTACGTAGACTG 57.071 47.619 20.44 20.44 37.01 3.51
5396 5823 4.387862 CACAATTGGACAGGTTACGTAGAC 59.612 45.833 10.83 0.00 0.00 2.59
5397 5824 4.562082 CACAATTGGACAGGTTACGTAGA 58.438 43.478 10.83 0.00 0.00 2.59
5398 5825 3.124636 GCACAATTGGACAGGTTACGTAG 59.875 47.826 10.83 0.00 0.00 3.51
5399 5826 3.068560 GCACAATTGGACAGGTTACGTA 58.931 45.455 10.83 0.00 0.00 3.57
5400 5827 1.877443 GCACAATTGGACAGGTTACGT 59.123 47.619 10.83 0.00 0.00 3.57
5401 5828 2.151202 AGCACAATTGGACAGGTTACG 58.849 47.619 10.83 0.00 0.00 3.18
5402 5829 4.584327 AAAGCACAATTGGACAGGTTAC 57.416 40.909 10.83 0.00 0.00 2.50
5403 5830 4.764823 CCTAAAGCACAATTGGACAGGTTA 59.235 41.667 10.83 0.28 0.00 2.85
5404 5831 3.573967 CCTAAAGCACAATTGGACAGGTT 59.426 43.478 10.83 5.83 0.00 3.50
5405 5832 3.157087 CCTAAAGCACAATTGGACAGGT 58.843 45.455 10.83 0.00 0.00 4.00
5406 5833 2.094545 GCCTAAAGCACAATTGGACAGG 60.095 50.000 10.83 8.14 42.97 4.00
5407 5834 3.221964 GCCTAAAGCACAATTGGACAG 57.778 47.619 10.83 0.00 42.97 3.51
5434 5861 3.759086 TGGACAGTGCAAACAGTTTGTTA 59.241 39.130 23.96 12.91 40.14 2.41
5449 5876 5.568620 AGTAACCAGAAGATTTGGACAGT 57.431 39.130 0.00 0.00 39.08 3.55
5450 5877 5.765182 ACAAGTAACCAGAAGATTTGGACAG 59.235 40.000 0.00 0.00 39.08 3.51
5451 5878 5.690865 ACAAGTAACCAGAAGATTTGGACA 58.309 37.500 0.00 0.00 39.08 4.02
5452 5879 7.626452 GCATACAAGTAACCAGAAGATTTGGAC 60.626 40.741 0.00 0.00 39.08 4.02
5453 5880 6.374333 GCATACAAGTAACCAGAAGATTTGGA 59.626 38.462 0.00 0.00 39.08 3.53
5455 5882 7.246311 CAGCATACAAGTAACCAGAAGATTTG 58.754 38.462 0.00 0.00 0.00 2.32
5456 5883 6.375455 CCAGCATACAAGTAACCAGAAGATTT 59.625 38.462 0.00 0.00 0.00 2.17
5457 5884 5.882557 CCAGCATACAAGTAACCAGAAGATT 59.117 40.000 0.00 0.00 0.00 2.40
5458 5885 5.045578 ACCAGCATACAAGTAACCAGAAGAT 60.046 40.000 0.00 0.00 0.00 2.40
5459 5886 4.286032 ACCAGCATACAAGTAACCAGAAGA 59.714 41.667 0.00 0.00 0.00 2.87
5460 5887 4.579869 ACCAGCATACAAGTAACCAGAAG 58.420 43.478 0.00 0.00 0.00 2.85
5461 5888 4.634012 ACCAGCATACAAGTAACCAGAA 57.366 40.909 0.00 0.00 0.00 3.02
5462 5889 4.775780 AGTACCAGCATACAAGTAACCAGA 59.224 41.667 0.00 0.00 0.00 3.86
5463 5890 4.870426 CAGTACCAGCATACAAGTAACCAG 59.130 45.833 0.00 0.00 0.00 4.00
5464 5891 4.827692 CAGTACCAGCATACAAGTAACCA 58.172 43.478 0.00 0.00 0.00 3.67
5465 5892 3.621715 GCAGTACCAGCATACAAGTAACC 59.378 47.826 3.23 0.00 0.00 2.85
5466 5893 4.330074 CAGCAGTACCAGCATACAAGTAAC 59.670 45.833 10.16 0.00 0.00 2.50
5467 5894 4.503910 CAGCAGTACCAGCATACAAGTAA 58.496 43.478 10.16 0.00 0.00 2.24
5468 5895 3.118775 CCAGCAGTACCAGCATACAAGTA 60.119 47.826 10.16 0.00 0.00 2.24
5469 5896 2.355108 CCAGCAGTACCAGCATACAAGT 60.355 50.000 10.16 0.00 0.00 3.16
5470 5897 2.093500 TCCAGCAGTACCAGCATACAAG 60.093 50.000 10.16 0.00 0.00 3.16
5471 5898 1.905894 TCCAGCAGTACCAGCATACAA 59.094 47.619 10.16 0.00 0.00 2.41
5472 5899 1.567357 TCCAGCAGTACCAGCATACA 58.433 50.000 10.16 0.00 0.00 2.29
5473 5900 2.103094 TGATCCAGCAGTACCAGCATAC 59.897 50.000 10.16 0.00 0.00 2.39
5474 5901 2.103094 GTGATCCAGCAGTACCAGCATA 59.897 50.000 10.16 0.00 0.00 3.14
5475 5902 1.134280 GTGATCCAGCAGTACCAGCAT 60.134 52.381 10.16 0.00 0.00 3.79
5541 6027 5.756918 ACTACTAGACTGCTAATCTCACCA 58.243 41.667 0.00 0.00 0.00 4.17
5580 6066 5.528690 TGCACTCCTACATGCATTAGAATTC 59.471 40.000 13.99 0.00 46.63 2.17
5647 6145 1.684983 CAATGCCATCTTTGCCTAGGG 59.315 52.381 11.72 0.00 0.00 3.53
5650 6148 2.026641 GCTCAATGCCATCTTTGCCTA 58.973 47.619 0.00 0.00 35.15 3.93
5662 6160 1.747709 AGTGGTCATCAGCTCAATGC 58.252 50.000 1.41 0.00 43.29 3.56
5670 6168 0.518636 CCGTTGCAAGTGGTCATCAG 59.481 55.000 0.00 0.00 0.00 2.90
5675 6173 0.951558 ACAATCCGTTGCAAGTGGTC 59.048 50.000 15.37 0.00 38.96 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.