Multiple sequence alignment - TraesCS5A01G453700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G453700 chr5A 100.000 8515 0 0 1 8515 635277435 635268921 0.000000e+00 15725.0
1 TraesCS5A01G453700 chr5A 88.694 628 54 13 6478 7099 634988258 634987642 0.000000e+00 750.0
2 TraesCS5A01G453700 chr5A 88.413 630 60 12 6474 7100 635247351 635247970 0.000000e+00 747.0
3 TraesCS5A01G453700 chr5A 83.886 633 59 23 7096 7718 634634527 634633928 1.600000e-156 564.0
4 TraesCS5A01G453700 chr5A 88.344 163 19 0 8118 8280 11038724 11038562 6.740000e-46 196.0
5 TraesCS5A01G453700 chr5A 87.195 164 20 1 8118 8280 569179317 569179154 1.460000e-42 185.0
6 TraesCS5A01G453700 chr5A 88.430 121 10 4 4600 4719 690948209 690948326 8.910000e-30 143.0
7 TraesCS5A01G453700 chr5B 95.139 3024 117 17 4713 7718 637895409 637892398 0.000000e+00 4743.0
8 TraesCS5A01G453700 chr5B 96.149 1766 53 6 2585 4349 637897464 637895713 0.000000e+00 2870.0
9 TraesCS5A01G453700 chr5B 96.162 912 28 4 1676 2587 637898418 637897514 0.000000e+00 1483.0
10 TraesCS5A01G453700 chr5B 87.469 1221 115 22 7148 8358 637500281 637499089 0.000000e+00 1373.0
11 TraesCS5A01G453700 chr5B 93.099 797 27 11 817 1600 637899194 637898413 0.000000e+00 1142.0
12 TraesCS5A01G453700 chr5B 86.614 889 84 20 6478 7350 637781324 637780455 0.000000e+00 950.0
13 TraesCS5A01G453700 chr5B 86.389 889 84 22 6478 7350 637802496 637801629 0.000000e+00 937.0
14 TraesCS5A01G453700 chr5B 88.660 679 62 8 6478 7152 637714135 637713468 0.000000e+00 813.0
15 TraesCS5A01G453700 chr5B 86.762 627 74 5 7735 8358 637766247 637765627 0.000000e+00 689.0
16 TraesCS5A01G453700 chr5B 86.185 637 49 17 7735 8358 637892348 637891738 0.000000e+00 652.0
17 TraesCS5A01G453700 chr5B 94.815 270 14 0 4344 4613 637895679 637895410 1.020000e-113 422.0
18 TraesCS5A01G453700 chr5B 88.021 192 21 2 7527 7718 637766484 637766295 8.600000e-55 226.0
19 TraesCS5A01G453700 chr5B 89.881 168 17 0 7364 7531 637768201 637768034 5.180000e-52 217.0
20 TraesCS5A01G453700 chr5D 94.120 2959 119 28 4344 7271 507564777 507561843 0.000000e+00 4449.0
21 TraesCS5A01G453700 chr5D 96.601 1765 44 4 2585 4349 507566559 507564811 0.000000e+00 2913.0
22 TraesCS5A01G453700 chr5D 96.491 912 23 2 1676 2587 507567511 507566609 0.000000e+00 1498.0
23 TraesCS5A01G453700 chr5D 93.667 900 34 11 712 1597 507568399 507567509 0.000000e+00 1325.0
24 TraesCS5A01G453700 chr5D 89.956 458 33 6 7262 7718 507561708 507561263 5.730000e-161 579.0
25 TraesCS5A01G453700 chr5D 89.965 289 21 4 7731 8018 507561217 507560936 4.860000e-97 366.0
26 TraesCS5A01G453700 chr5D 90.179 224 13 4 6478 6699 507511757 507511541 5.030000e-72 283.0
27 TraesCS5A01G453700 chr1A 86.486 592 72 7 74 659 3946527 3947116 2.000000e-180 643.0
28 TraesCS5A01G453700 chr1A 85.185 108 14 2 4612 4718 352174093 352174199 9.040000e-20 110.0
29 TraesCS5A01G453700 chr6D 89.195 472 46 5 1 469 19089848 19089379 1.230000e-162 584.0
30 TraesCS5A01G453700 chr6D 87.805 164 19 1 8118 8280 462227444 462227281 3.140000e-44 191.0
31 TraesCS5A01G453700 chr6D 86.310 168 22 1 8113 8280 472941674 472941508 1.890000e-41 182.0
32 TraesCS5A01G453700 chr6D 85.981 107 15 0 4612 4718 36072802 36072908 1.940000e-21 115.0
33 TraesCS5A01G453700 chr4B 78.429 802 132 27 6840 7618 3899798 3900581 1.290000e-132 484.0
34 TraesCS5A01G453700 chr3A 88.252 349 38 3 3 348 713309827 713309479 1.710000e-111 414.0
35 TraesCS5A01G453700 chr3A 84.932 292 37 7 350 636 713309392 713309103 1.080000e-73 289.0
36 TraesCS5A01G453700 chr2D 88.286 350 35 6 2 348 184404145 184404491 1.710000e-111 414.0
37 TraesCS5A01G453700 chr2D 95.283 106 5 0 14 119 595718548 595718443 1.470000e-37 169.0
38 TraesCS5A01G453700 chr2D 87.963 108 13 0 4611 4718 392161776 392161669 2.490000e-25 128.0
39 TraesCS5A01G453700 chr2D 83.824 136 19 2 503 636 595718081 595717947 8.970000e-25 126.0
40 TraesCS5A01G453700 chr3B 87.500 320 38 2 346 663 697161249 697160930 1.350000e-97 368.0
41 TraesCS5A01G453700 chr4D 81.402 371 40 15 6841 7205 3339472 3339125 8.420000e-70 276.0
42 TraesCS5A01G453700 chr4D 78.333 420 58 24 7110 7519 3342048 3341652 3.070000e-59 241.0
43 TraesCS5A01G453700 chr4D 80.591 237 36 7 6236 6462 3340084 3339848 3.160000e-39 174.0
44 TraesCS5A01G453700 chr4D 90.741 108 10 0 4611 4718 64546835 64546728 2.480000e-30 145.0
45 TraesCS5A01G453700 chrUn 84.100 239 30 8 143 376 369302556 369302321 3.090000e-54 224.0
46 TraesCS5A01G453700 chrUn 92.308 39 0 1 495 533 368679 368714 1.500000e-02 52.8
47 TraesCS5A01G453700 chrUn 92.308 39 0 1 495 533 425402 425437 1.500000e-02 52.8
48 TraesCS5A01G453700 chrUn 92.308 39 0 1 495 533 440729 440764 1.500000e-02 52.8
49 TraesCS5A01G453700 chrUn 92.308 39 0 1 495 533 405662645 405662680 1.500000e-02 52.8
50 TraesCS5A01G453700 chr4A 84.100 239 30 8 143 376 658759147 658758912 3.090000e-54 224.0
51 TraesCS5A01G453700 chr4A 84.100 239 30 8 143 376 658776626 658776391 3.090000e-54 224.0
52 TraesCS5A01G453700 chr4A 84.100 239 30 8 143 376 658803568 658803333 3.090000e-54 224.0
53 TraesCS5A01G453700 chr6A 92.568 148 11 0 8367 8514 109483268 109483121 6.700000e-51 213.0
54 TraesCS5A01G453700 chr7D 88.957 163 17 1 8118 8280 76562728 76562567 5.210000e-47 200.0
55 TraesCS5A01G453700 chr7D 87.162 148 19 0 8367 8514 423810347 423810200 1.470000e-37 169.0
56 TraesCS5A01G453700 chr7B 80.233 258 44 7 143 396 325508979 325509233 4.060000e-43 187.0
57 TraesCS5A01G453700 chr7B 92.683 123 8 1 1 122 397844871 397844993 8.780000e-40 176.0
58 TraesCS5A01G453700 chr1D 87.037 162 21 0 8118 8279 286378482 286378321 5.250000e-42 183.0
59 TraesCS5A01G453700 chr1D 95.238 42 0 2 624 663 488957840 488957881 1.980000e-06 65.8
60 TraesCS5A01G453700 chr1B 91.509 106 9 0 4 109 16930546 16930651 6.890000e-31 147.0
61 TraesCS5A01G453700 chr1B 86.555 119 12 4 4604 4720 301273388 301273504 2.490000e-25 128.0
62 TraesCS5A01G453700 chr2B 86.111 108 15 0 4611 4718 705871383 705871276 5.400000e-22 117.0
63 TraesCS5A01G453700 chr7A 86.111 108 13 2 4612 4718 48103180 48103074 1.940000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G453700 chr5A 635268921 635277435 8514 True 15725.000000 15725 100.000000 1 8515 1 chr5A.!!$R5 8514
1 TraesCS5A01G453700 chr5A 634987642 634988258 616 True 750.000000 750 88.694000 6478 7099 1 chr5A.!!$R4 621
2 TraesCS5A01G453700 chr5A 635247351 635247970 619 False 747.000000 747 88.413000 6474 7100 1 chr5A.!!$F1 626
3 TraesCS5A01G453700 chr5A 634633928 634634527 599 True 564.000000 564 83.886000 7096 7718 1 chr5A.!!$R3 622
4 TraesCS5A01G453700 chr5B 637891738 637899194 7456 True 1885.333333 4743 93.591500 817 8358 6 chr5B.!!$R6 7541
5 TraesCS5A01G453700 chr5B 637499089 637500281 1192 True 1373.000000 1373 87.469000 7148 8358 1 chr5B.!!$R1 1210
6 TraesCS5A01G453700 chr5B 637780455 637781324 869 True 950.000000 950 86.614000 6478 7350 1 chr5B.!!$R3 872
7 TraesCS5A01G453700 chr5B 637801629 637802496 867 True 937.000000 937 86.389000 6478 7350 1 chr5B.!!$R4 872
8 TraesCS5A01G453700 chr5B 637713468 637714135 667 True 813.000000 813 88.660000 6478 7152 1 chr5B.!!$R2 674
9 TraesCS5A01G453700 chr5B 637765627 637768201 2574 True 377.333333 689 88.221333 7364 8358 3 chr5B.!!$R5 994
10 TraesCS5A01G453700 chr5D 507560936 507568399 7463 True 1855.000000 4449 93.466667 712 8018 6 chr5D.!!$R2 7306
11 TraesCS5A01G453700 chr1A 3946527 3947116 589 False 643.000000 643 86.486000 74 659 1 chr1A.!!$F1 585
12 TraesCS5A01G453700 chr4B 3899798 3900581 783 False 484.000000 484 78.429000 6840 7618 1 chr4B.!!$F1 778
13 TraesCS5A01G453700 chr3A 713309103 713309827 724 True 351.500000 414 86.592000 3 636 2 chr3A.!!$R1 633
14 TraesCS5A01G453700 chr4D 3339125 3342048 2923 True 230.333333 276 80.108667 6236 7519 3 chr4D.!!$R2 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 471 0.034767 TCTCCATTGCCAGGCTTGAG 60.035 55.000 14.15 12.56 0.00 3.02 F
606 700 0.108186 TAGCAACACGGATGGCTCAG 60.108 55.000 0.00 0.00 37.79 3.35 F
1214 1308 0.965363 TGCTTCCCCTTCGATTTGGC 60.965 55.000 0.00 0.00 0.00 4.52 F
1607 1714 1.216678 TGTTTCTTCCTGAAAGCCCCA 59.783 47.619 0.00 0.00 44.36 4.96 F
2858 3017 1.202486 TGGTAGCGTATTACTGCCTGC 60.202 52.381 0.00 0.00 40.29 4.85 F
3405 3564 3.528597 AACTATTCTCCTTCCGCTGTC 57.471 47.619 0.00 0.00 0.00 3.51 F
5031 5231 2.162408 GGAAACTTCCTTGCCATCTTCG 59.838 50.000 0.97 0.00 44.11 3.79 F
5788 6010 1.246649 TGCGGAAATCTGTTGCACAT 58.753 45.000 0.00 0.00 0.00 3.21 F
5988 6210 0.712775 CTCTTTCGTTGCAGAGCTCG 59.287 55.000 8.37 4.60 30.45 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1285 0.329596 AATCGAAGGGGAAGCAAGCT 59.670 50.000 0.00 0.00 0.00 3.74 R
2452 2559 2.128771 ATCAAAACAGCTGGCCGTAT 57.871 45.000 19.93 2.95 0.00 3.06 R
2858 3017 2.692557 AGCACTCTACCAGCTGTATCAG 59.307 50.000 13.81 5.74 37.20 2.90 R
3405 3564 2.290531 ATCAGTGAGACATGTCTGCG 57.709 50.000 32.50 16.72 40.61 5.18 R
3802 3961 0.389426 TTCGGCTCACGCTCTTTACC 60.389 55.000 0.00 0.00 43.86 2.85 R
5147 5350 1.403914 CGTGCTGAGCTCTCATCAAGT 60.404 52.381 16.19 0.00 37.45 3.16 R
5978 6200 0.811915 GTCCTAAGTCGAGCTCTGCA 59.188 55.000 12.85 0.00 0.00 4.41 R
7377 7892 1.781025 ATGTCACGGGCACACAAACG 61.781 55.000 0.00 0.00 0.00 3.60 R
7648 9735 3.251972 TGAATGCACAAATGACGTTAGCA 59.748 39.130 0.00 0.00 34.78 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 4.225942 TCAGTGAGCTAGGAACATGGAAAT 59.774 41.667 0.00 0.00 0.00 2.17
114 115 6.100279 TCAGTGAGCTAGGAACATGGAAATAT 59.900 38.462 0.00 0.00 0.00 1.28
119 122 8.686334 TGAGCTAGGAACATGGAAATATTTTTC 58.314 33.333 1.43 1.94 40.48 2.29
150 154 7.541783 TCTGTTGCAATGTACATAAAATGCTTC 59.458 33.333 23.71 17.97 34.97 3.86
222 226 3.636300 TGCCACTTCAGTTAATTGCTTGT 59.364 39.130 0.00 0.00 0.00 3.16
261 265 6.491745 ACTGTGAGAGTGAGAGAGAATTACAA 59.508 38.462 0.00 0.00 31.75 2.41
281 285 9.872684 ATTACAATGAAAGATGAAGATATGGGT 57.127 29.630 0.00 0.00 0.00 4.51
373 464 8.253113 AGTTATTTAATTTGTCTCCATTGCCAG 58.747 33.333 0.00 0.00 0.00 4.85
380 471 0.034767 TCTCCATTGCCAGGCTTGAG 60.035 55.000 14.15 12.56 0.00 3.02
443 535 1.225991 GCGTTCGCATCATCGCAAA 60.226 52.632 12.33 0.00 46.40 3.68
542 635 5.105187 TGAGATTGATCATGTTCTCCGTCTT 60.105 40.000 19.88 0.00 34.93 3.01
566 660 2.092968 TGAATAGGTGGCTCGCTGATTT 60.093 45.455 0.00 0.00 0.00 2.17
569 663 0.905357 AGGTGGCTCGCTGATTTACT 59.095 50.000 0.00 0.00 0.00 2.24
588 682 1.272490 CTGTGACGAAGAGGGCAAGTA 59.728 52.381 0.00 0.00 0.00 2.24
606 700 0.108186 TAGCAACACGGATGGCTCAG 60.108 55.000 0.00 0.00 37.79 3.35
618 712 2.881352 GCTCAGTAGCGACGTGGC 60.881 66.667 15.38 15.38 39.39 5.01
631 725 1.164041 ACGTGGCTTTGTTTCTCCCG 61.164 55.000 0.00 0.00 0.00 5.14
637 731 1.202359 GCTTTGTTTCTCCCGTTGCAA 60.202 47.619 0.00 0.00 0.00 4.08
639 733 1.757682 TTGTTTCTCCCGTTGCAACT 58.242 45.000 26.09 0.00 0.00 3.16
642 736 1.002792 GTTTCTCCCGTTGCAACTCAC 60.003 52.381 26.09 8.92 0.00 3.51
659 753 2.232941 CTCACGGACCCTTTTGCTAGTA 59.767 50.000 0.00 0.00 0.00 1.82
660 754 2.633967 TCACGGACCCTTTTGCTAGTAA 59.366 45.455 0.00 0.00 0.00 2.24
661 755 3.262405 TCACGGACCCTTTTGCTAGTAAT 59.738 43.478 0.00 0.00 0.00 1.89
662 756 4.467082 TCACGGACCCTTTTGCTAGTAATA 59.533 41.667 0.00 0.00 0.00 0.98
664 758 4.223477 ACGGACCCTTTTGCTAGTAATACA 59.777 41.667 0.00 0.00 0.00 2.29
666 760 5.644636 CGGACCCTTTTGCTAGTAATACAAA 59.355 40.000 0.00 0.00 0.00 2.83
667 761 6.149807 CGGACCCTTTTGCTAGTAATACAAAA 59.850 38.462 0.00 0.05 40.07 2.44
669 763 7.973944 GGACCCTTTTGCTAGTAATACAAAATG 59.026 37.037 0.00 0.00 41.11 2.32
707 801 9.657419 GAAAATACTTTTCATGATGGTTCCAAT 57.343 29.630 0.00 0.00 46.34 3.16
721 815 9.418839 TGATGGTTCCAATAATACATGATTGAA 57.581 29.630 0.00 0.00 35.46 2.69
758 852 8.168058 ACTAATATACTCCCTTGTTGTGGTTTT 58.832 33.333 0.00 0.00 0.00 2.43
759 853 9.675464 CTAATATACTCCCTTGTTGTGGTTTTA 57.325 33.333 0.00 0.00 0.00 1.52
760 854 8.575649 AATATACTCCCTTGTTGTGGTTTTAG 57.424 34.615 0.00 0.00 0.00 1.85
763 857 5.020795 ACTCCCTTGTTGTGGTTTTAGTTT 58.979 37.500 0.00 0.00 0.00 2.66
769 863 9.168451 CCCTTGTTGTGGTTTTAGTTTAAATTT 57.832 29.630 0.00 0.00 0.00 1.82
813 907 2.555732 ATGAAACGGGGGAGTACCTA 57.444 50.000 0.00 0.00 40.03 3.08
830 924 7.656542 GGAGTACCTAATATTTGGAAGCTGTAC 59.343 40.741 20.84 11.84 0.00 2.90
832 926 8.545472 AGTACCTAATATTTGGAAGCTGTACAA 58.455 33.333 20.84 0.00 0.00 2.41
833 927 7.865706 ACCTAATATTTGGAAGCTGTACAAG 57.134 36.000 20.84 0.00 0.00 3.16
835 929 7.888546 ACCTAATATTTGGAAGCTGTACAAGTT 59.111 33.333 20.84 0.00 0.00 2.66
836 930 8.184192 CCTAATATTTGGAAGCTGTACAAGTTG 58.816 37.037 10.08 0.00 0.00 3.16
837 931 7.759489 AATATTTGGAAGCTGTACAAGTTGA 57.241 32.000 10.54 0.00 0.00 3.18
1214 1308 0.965363 TGCTTCCCCTTCGATTTGGC 60.965 55.000 0.00 0.00 0.00 4.52
1412 1509 7.231925 ACCTAAAAGGAAAAATTAGCGGAGAAA 59.768 33.333 0.00 0.00 37.67 2.52
1497 1604 5.916318 TCACAGTCAAATGCAATTTTTCCT 58.084 33.333 0.00 0.00 46.10 3.36
1597 1704 5.506317 CGCAGATTTTGACTTGTTTCTTCCT 60.506 40.000 0.00 0.00 0.00 3.36
1598 1705 5.689068 GCAGATTTTGACTTGTTTCTTCCTG 59.311 40.000 0.00 0.00 0.00 3.86
1599 1706 6.460123 GCAGATTTTGACTTGTTTCTTCCTGA 60.460 38.462 0.00 0.00 0.00 3.86
1600 1707 7.483307 CAGATTTTGACTTGTTTCTTCCTGAA 58.517 34.615 0.00 0.00 0.00 3.02
1601 1708 7.975616 CAGATTTTGACTTGTTTCTTCCTGAAA 59.024 33.333 0.00 0.00 41.85 2.69
1605 1712 2.959030 ACTTGTTTCTTCCTGAAAGCCC 59.041 45.455 0.00 0.00 44.36 5.19
1607 1714 1.216678 TGTTTCTTCCTGAAAGCCCCA 59.783 47.619 0.00 0.00 44.36 4.96
1608 1715 2.158325 TGTTTCTTCCTGAAAGCCCCAT 60.158 45.455 0.00 0.00 44.36 4.00
1610 1717 3.366052 TTCTTCCTGAAAGCCCCATAC 57.634 47.619 0.00 0.00 34.76 2.39
1611 1718 2.274542 TCTTCCTGAAAGCCCCATACA 58.725 47.619 0.00 0.00 34.76 2.29
1612 1719 2.647299 TCTTCCTGAAAGCCCCATACAA 59.353 45.455 0.00 0.00 34.76 2.41
1613 1720 3.269381 TCTTCCTGAAAGCCCCATACAAT 59.731 43.478 0.00 0.00 34.76 2.71
1614 1721 3.017048 TCCTGAAAGCCCCATACAATG 57.983 47.619 0.00 0.00 0.00 2.82
1615 1722 1.410153 CCTGAAAGCCCCATACAATGC 59.590 52.381 0.00 0.00 0.00 3.56
1616 1723 2.381911 CTGAAAGCCCCATACAATGCT 58.618 47.619 0.00 0.00 35.08 3.79
1617 1724 3.554934 CTGAAAGCCCCATACAATGCTA 58.445 45.455 0.00 0.00 32.82 3.49
1619 1726 4.545678 TGAAAGCCCCATACAATGCTATT 58.454 39.130 0.00 0.00 32.82 1.73
1620 1727 4.341806 TGAAAGCCCCATACAATGCTATTG 59.658 41.667 7.16 7.16 32.82 1.90
1621 1728 3.882102 AGCCCCATACAATGCTATTGA 57.118 42.857 13.53 1.67 30.97 2.57
1622 1729 3.759581 AGCCCCATACAATGCTATTGAG 58.240 45.455 13.53 5.42 30.97 3.02
1623 1730 3.139025 AGCCCCATACAATGCTATTGAGT 59.861 43.478 13.53 2.20 30.97 3.41
1624 1731 4.350816 AGCCCCATACAATGCTATTGAGTA 59.649 41.667 13.53 0.00 30.97 2.59
1626 1733 5.534654 GCCCCATACAATGCTATTGAGTAAA 59.465 40.000 13.53 0.00 0.00 2.01
1628 1735 6.207417 CCCCATACAATGCTATTGAGTAAAGG 59.793 42.308 13.53 7.58 0.00 3.11
1631 1738 7.041098 CCATACAATGCTATTGAGTAAAGGGTC 60.041 40.741 13.53 0.00 0.00 4.46
1632 1739 5.815581 ACAATGCTATTGAGTAAAGGGTCA 58.184 37.500 13.53 0.00 0.00 4.02
1633 1740 5.648092 ACAATGCTATTGAGTAAAGGGTCAC 59.352 40.000 13.53 0.00 0.00 3.67
1634 1741 5.700402 ATGCTATTGAGTAAAGGGTCACT 57.300 39.130 0.00 0.00 0.00 3.41
1635 1742 5.499004 TGCTATTGAGTAAAGGGTCACTT 57.501 39.130 0.00 0.00 42.52 3.16
1646 1753 3.801114 AGGGTCACTTTGTTTTTCTGC 57.199 42.857 0.00 0.00 0.00 4.26
1647 1754 3.096092 AGGGTCACTTTGTTTTTCTGCA 58.904 40.909 0.00 0.00 0.00 4.41
1649 1756 4.892934 AGGGTCACTTTGTTTTTCTGCATA 59.107 37.500 0.00 0.00 0.00 3.14
1650 1757 5.539955 AGGGTCACTTTGTTTTTCTGCATAT 59.460 36.000 0.00 0.00 0.00 1.78
1651 1758 6.719370 AGGGTCACTTTGTTTTTCTGCATATA 59.281 34.615 0.00 0.00 0.00 0.86
1652 1759 6.806739 GGGTCACTTTGTTTTTCTGCATATAC 59.193 38.462 0.00 0.00 0.00 1.47
1654 1761 7.538678 GGTCACTTTGTTTTTCTGCATATACAG 59.461 37.037 0.00 0.00 39.12 2.74
1655 1762 7.061094 GTCACTTTGTTTTTCTGCATATACAGC 59.939 37.037 0.00 0.00 37.59 4.40
1656 1763 6.862608 CACTTTGTTTTTCTGCATATACAGCA 59.137 34.615 0.00 2.14 40.19 4.41
1658 1765 8.090214 ACTTTGTTTTTCTGCATATACAGCATT 58.910 29.630 0.00 0.00 41.82 3.56
1659 1766 7.815398 TTGTTTTTCTGCATATACAGCATTG 57.185 32.000 0.00 0.00 41.82 2.82
1660 1767 7.155655 TGTTTTTCTGCATATACAGCATTGA 57.844 32.000 0.00 0.00 41.82 2.57
1661 1768 7.028962 TGTTTTTCTGCATATACAGCATTGAC 58.971 34.615 0.00 0.00 41.82 3.18
1662 1769 6.756299 TTTTCTGCATATACAGCATTGACA 57.244 33.333 0.00 0.00 41.82 3.58
1663 1770 5.739752 TTCTGCATATACAGCATTGACAC 57.260 39.130 0.00 0.00 41.82 3.67
1665 1772 3.791245 TGCATATACAGCATTGACACGA 58.209 40.909 0.00 0.00 37.02 4.35
1666 1773 4.379652 TGCATATACAGCATTGACACGAT 58.620 39.130 0.00 0.00 37.02 3.73
1668 1775 5.988561 TGCATATACAGCATTGACACGATTA 59.011 36.000 0.00 0.00 37.02 1.75
1671 1778 7.307396 GCATATACAGCATTGACACGATTAGTT 60.307 37.037 0.00 0.00 0.00 2.24
1673 1780 9.758651 ATATACAGCATTGACACGATTAGTTTA 57.241 29.630 0.00 0.00 0.00 2.01
1674 1781 6.408858 ACAGCATTGACACGATTAGTTTAG 57.591 37.500 0.00 0.00 0.00 1.85
1675 1782 5.932303 ACAGCATTGACACGATTAGTTTAGT 59.068 36.000 0.00 0.00 0.00 2.24
1676 1783 6.090898 ACAGCATTGACACGATTAGTTTAGTC 59.909 38.462 0.00 0.00 0.00 2.59
1677 1784 5.581085 AGCATTGACACGATTAGTTTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
1914 2021 1.482593 CGATGGGTAAGCTTCCTCAGT 59.517 52.381 0.00 0.00 0.00 3.41
2001 2108 4.694982 TGCATTTTCACTTATCGCTCTTCA 59.305 37.500 0.00 0.00 0.00 3.02
2011 2118 6.417930 CACTTATCGCTCTTCATCGTTTATCA 59.582 38.462 0.00 0.00 0.00 2.15
2124 2231 7.425577 TGTTGTGAGACTGAAATATTCACAG 57.574 36.000 16.12 16.12 45.96 3.66
2397 2504 7.327032 CAGATTAGGCACTCTTTTGCTTAAAAC 59.673 37.037 4.11 2.90 44.40 2.43
2452 2559 7.183112 TGAATGGTACTACCCTTGGATCTTTTA 59.817 37.037 2.59 0.00 37.50 1.52
2540 2647 6.095860 CAGCAGGATCAAGATTTCATTGGTAA 59.904 38.462 0.00 0.00 0.00 2.85
2541 2648 6.837568 AGCAGGATCAAGATTTCATTGGTAAT 59.162 34.615 0.00 0.00 0.00 1.89
2542 2649 8.000709 AGCAGGATCAAGATTTCATTGGTAATA 58.999 33.333 0.00 0.00 0.00 0.98
2543 2650 8.800332 GCAGGATCAAGATTTCATTGGTAATAT 58.200 33.333 0.00 0.00 0.00 1.28
2545 2652 9.525826 AGGATCAAGATTTCATTGGTAATATCC 57.474 33.333 0.00 0.00 31.21 2.59
2682 2841 5.047021 TCCGAATTTGCAACATTTGGGATTA 60.047 36.000 24.97 13.22 36.24 1.75
2684 2843 6.983307 CCGAATTTGCAACATTTGGGATTATA 59.017 34.615 21.37 0.00 33.04 0.98
2685 2844 7.656948 CCGAATTTGCAACATTTGGGATTATAT 59.343 33.333 21.37 0.48 33.04 0.86
2686 2845 9.044150 CGAATTTGCAACATTTGGGATTATATT 57.956 29.630 0.00 0.00 0.00 1.28
2858 3017 1.202486 TGGTAGCGTATTACTGCCTGC 60.202 52.381 0.00 0.00 40.29 4.85
2953 3112 7.754851 TTCTCCTTTTCCCTGTTATGTTAAC 57.245 36.000 0.00 0.00 0.00 2.01
3091 3250 7.668886 AGTTTTCTTGAATGGATGAGTGATTCT 59.331 33.333 0.00 0.00 0.00 2.40
3344 3503 7.145932 TCAAAAGAGCTTTCTTAGGTTATGC 57.854 36.000 0.00 0.00 33.94 3.14
3353 3512 6.148811 GCTTTCTTAGGTTATGCACAGTTGTA 59.851 38.462 0.00 0.00 0.00 2.41
3358 3517 3.813166 AGGTTATGCACAGTTGTACACAC 59.187 43.478 0.00 0.00 0.00 3.82
3405 3564 3.528597 AACTATTCTCCTTCCGCTGTC 57.471 47.619 0.00 0.00 0.00 3.51
3523 3682 9.366216 ACTTTTGGAATCTTGAACTTAACAAAC 57.634 29.630 0.00 0.00 0.00 2.93
3731 3890 5.178061 GCTTGCCACCTTAAATAAATTGCT 58.822 37.500 0.00 0.00 0.00 3.91
3790 3949 4.460382 AGATGCCTTGTGAACACTTAATGG 59.540 41.667 6.51 0.27 0.00 3.16
3802 3961 8.169268 GTGAACACTTAATGGAACTTTCGATAG 58.831 37.037 0.92 0.92 0.00 2.08
3812 3971 4.503370 GGAACTTTCGATAGGTAAAGAGCG 59.497 45.833 7.80 0.00 36.43 5.03
3892 4052 9.969001 TTTATTACTGGTGGAAAGTATAAAGCT 57.031 29.630 0.00 0.00 30.46 3.74
3932 4092 5.620738 ACCATTATAGCTGTGTCATGTCT 57.379 39.130 0.00 0.00 0.00 3.41
3933 4093 5.605534 ACCATTATAGCTGTGTCATGTCTC 58.394 41.667 0.00 0.00 0.00 3.36
3934 4094 5.129320 ACCATTATAGCTGTGTCATGTCTCA 59.871 40.000 0.00 0.00 0.00 3.27
3935 4095 6.183361 ACCATTATAGCTGTGTCATGTCTCAT 60.183 38.462 0.00 0.00 0.00 2.90
3936 4096 6.147328 CCATTATAGCTGTGTCATGTCTCATG 59.853 42.308 0.00 3.65 0.00 3.07
3937 4097 4.750021 ATAGCTGTGTCATGTCTCATGT 57.250 40.909 0.00 0.00 0.00 3.21
3938 4098 2.969990 AGCTGTGTCATGTCTCATGTC 58.030 47.619 9.13 5.16 0.00 3.06
3952 4112 5.426509 TGTCTCATGTCCCATAGATTTGAGT 59.573 40.000 0.00 0.00 37.50 3.41
4405 4604 5.141182 TCTCCTAAAGACTGTCTGTGACTT 58.859 41.667 11.71 4.06 33.15 3.01
4449 4648 5.940470 TCTGTTCCTTTTCTCCTTATCTTGC 59.060 40.000 0.00 0.00 0.00 4.01
4463 4662 6.660521 TCCTTATCTTGCATGTTGACTTGATT 59.339 34.615 0.00 0.00 0.00 2.57
4469 4668 7.715657 TCTTGCATGTTGACTTGATTTAGTTT 58.284 30.769 0.00 0.00 0.00 2.66
4622 4821 4.756642 TGTAATATGTCGTACTACCTCCGG 59.243 45.833 0.00 0.00 0.00 5.14
4623 4822 3.498774 ATATGTCGTACTACCTCCGGT 57.501 47.619 0.00 0.00 40.16 5.28
4630 4829 2.686915 CGTACTACCTCCGGTCAGAAAT 59.313 50.000 0.00 0.00 37.09 2.17
4645 4844 5.915196 GGTCAGAAATTACTGTTGCTCAAAC 59.085 40.000 0.00 0.00 38.79 2.93
4682 4881 7.013369 AGACGTATTTCAGTGCTAGATACATCA 59.987 37.037 0.00 0.00 0.00 3.07
4995 5195 6.149474 TGGCTACTCAAGAAGCTTTAATTGTC 59.851 38.462 0.00 0.00 38.80 3.18
5031 5231 2.162408 GGAAACTTCCTTGCCATCTTCG 59.838 50.000 0.97 0.00 44.11 3.79
5147 5350 2.513317 TGGAGATGGCATGGATGGTAAA 59.487 45.455 3.81 0.00 0.00 2.01
5335 5550 1.340017 GCCATCTTCCAGGTGCAAGTA 60.340 52.381 0.00 0.00 0.00 2.24
5493 5708 7.148440 TGGCTTTGATTTTTCAGTTTTGACTTG 60.148 33.333 0.00 0.00 31.71 3.16
5594 5816 6.088016 TGTTCTGAAGCACTTGCATTATTT 57.912 33.333 3.62 0.00 45.16 1.40
5633 5855 5.374071 AGATCATGTGAATCTAGCATTGCA 58.626 37.500 11.91 0.00 0.00 4.08
5674 5896 3.521531 TGGATGTGCCACCATAGACTTTA 59.478 43.478 0.00 0.00 43.33 1.85
5771 5993 4.035675 GTGGCCAATACTTTCTCTGTATGC 59.964 45.833 7.24 0.00 31.76 3.14
5782 6004 4.471904 TCTCTGTATGCGGAAATCTGTT 57.528 40.909 0.00 0.00 0.00 3.16
5788 6010 1.246649 TGCGGAAATCTGTTGCACAT 58.753 45.000 0.00 0.00 0.00 3.21
5805 6027 5.620206 TGCACATTCTAAACCTCTTCTCAA 58.380 37.500 0.00 0.00 0.00 3.02
5914 6136 4.377839 TGCTCCTCAGATAGAAGAAACG 57.622 45.455 0.00 0.00 0.00 3.60
5978 6200 8.908678 GTTTGTTAACTGAAAAACTCTTTCGTT 58.091 29.630 7.22 10.16 33.44 3.85
5987 6209 1.789506 ACTCTTTCGTTGCAGAGCTC 58.210 50.000 5.27 5.27 40.35 4.09
5988 6210 0.712775 CTCTTTCGTTGCAGAGCTCG 59.287 55.000 8.37 4.60 30.45 5.03
5997 6220 0.811915 TGCAGAGCTCGACTTAGGAC 59.188 55.000 8.37 0.00 0.00 3.85
6040 6266 6.878317 TCCTCAGATACTGGTGTATTTCTTG 58.122 40.000 0.00 0.00 39.29 3.02
6068 6294 1.006281 AGTCAATGCACCCACCATCAT 59.994 47.619 0.00 0.00 0.00 2.45
6072 6298 3.117587 TCAATGCACCCACCATCATGATA 60.118 43.478 8.15 0.00 0.00 2.15
6326 6557 6.149973 TGAGCAATGTCATTTCTAAGAAGGTG 59.850 38.462 0.00 0.00 0.00 4.00
6480 6718 6.137794 TCTCTCTTGGAATAACTTAGCTCG 57.862 41.667 0.00 0.00 0.00 5.03
6726 6978 0.847373 TCTTGGCCAGTAACCACCAA 59.153 50.000 5.11 0.00 39.81 3.67
6727 6979 1.215673 TCTTGGCCAGTAACCACCAAA 59.784 47.619 5.11 0.00 41.44 3.28
6805 7124 0.819259 GCACTGGCTCTGACACCAAA 60.819 55.000 0.00 0.00 34.96 3.28
7045 7386 5.398236 TCCCTTAGTCATCCTATCCTTCAG 58.602 45.833 0.00 0.00 0.00 3.02
7075 7416 4.414852 CTTTAGAATGTGCATCAAACGGG 58.585 43.478 0.00 0.00 0.00 5.28
7088 7432 3.670625 TCAAACGGGTTCTCTGGTTATG 58.329 45.455 0.00 0.00 28.88 1.90
7284 7788 2.143876 AACTTTGGTTGGCACAGTCT 57.856 45.000 0.00 0.00 42.39 3.24
7306 7810 0.928229 CAACTACGGAATGCTACGCC 59.072 55.000 0.00 0.00 0.00 5.68
7312 7816 1.153429 GGAATGCTACGCCGGAACT 60.153 57.895 5.05 0.00 0.00 3.01
7339 7843 7.285566 ACCATAGATCAAGCATGATAAACTGT 58.714 34.615 4.06 0.00 46.30 3.55
7354 7869 9.807649 ATGATAAACTGTCTTTCAATTTATGCC 57.192 29.630 0.31 0.00 38.17 4.40
7359 7874 3.128589 TGTCTTTCAATTTATGCCGCCTC 59.871 43.478 0.00 0.00 0.00 4.70
7360 7875 3.128589 GTCTTTCAATTTATGCCGCCTCA 59.871 43.478 0.00 0.00 0.00 3.86
7377 7892 4.447054 CGCCTCAGTTCATGTATGATTCTC 59.553 45.833 0.00 0.00 36.56 2.87
7396 7911 1.781025 CGTTTGTGTGCCCGTGACAT 61.781 55.000 0.00 0.00 0.00 3.06
7499 8016 1.590238 CGCGAGCTCCTTTATTCACAG 59.410 52.381 8.47 0.00 0.00 3.66
7648 9735 5.127491 TCTTATTGAACACCTTTGTCCGTT 58.873 37.500 0.00 0.00 33.55 4.44
7685 9772 9.545105 TTTGTGCATTCATCTTTTAGTTCATTT 57.455 25.926 0.00 0.00 0.00 2.32
7703 9790 9.807649 AGTTCATTTATTTCATATTTCTGTGGC 57.192 29.630 0.00 0.00 0.00 5.01
7770 9890 9.777008 ATGAAGGGGGAAAACTAAATTATGTAA 57.223 29.630 0.00 0.00 0.00 2.41
7801 9921 4.552166 ACAAATGTATCATTACGGCAGC 57.448 40.909 0.00 0.00 0.00 5.25
7803 9923 4.397730 ACAAATGTATCATTACGGCAGCAA 59.602 37.500 0.00 0.00 0.00 3.91
7814 9934 2.226330 ACGGCAGCAAGTTCATGTTTA 58.774 42.857 0.00 0.00 0.00 2.01
7872 9997 6.403049 TGAACTTCCAACCTTTTTCTTTTCC 58.597 36.000 0.00 0.00 0.00 3.13
8123 10258 9.886132 GTCCTTGTTTCTTATTAGAATACTCCA 57.114 33.333 0.00 0.00 40.01 3.86
8175 10310 9.078990 AGAGATTTCAATATGGACTATGTACGA 57.921 33.333 0.00 0.00 0.00 3.43
8199 10334 8.607459 CGAAGCAAAATGAGTGAATCTATACTT 58.393 33.333 0.00 0.00 0.00 2.24
8358 10493 6.155367 AGGCTAACCCTTGGAGGTATATTTA 58.845 40.000 0.00 0.00 43.06 1.40
8359 10494 6.272558 AGGCTAACCCTTGGAGGTATATTTAG 59.727 42.308 0.00 0.00 43.06 1.85
8360 10495 6.044054 GGCTAACCCTTGGAGGTATATTTAGT 59.956 42.308 0.00 0.00 40.05 2.24
8361 10496 6.935208 GCTAACCCTTGGAGGTATATTTAGTG 59.065 42.308 0.00 0.00 40.05 2.74
8362 10497 5.306114 ACCCTTGGAGGTATATTTAGTGC 57.694 43.478 0.00 0.00 38.79 4.40
8363 10498 4.975794 ACCCTTGGAGGTATATTTAGTGCT 59.024 41.667 0.00 0.00 38.79 4.40
8364 10499 6.148186 ACCCTTGGAGGTATATTTAGTGCTA 58.852 40.000 0.00 0.00 38.79 3.49
8365 10500 6.618196 ACCCTTGGAGGTATATTTAGTGCTAA 59.382 38.462 0.00 0.00 38.79 3.09
8366 10501 7.162082 CCCTTGGAGGTATATTTAGTGCTAAG 58.838 42.308 0.00 0.00 31.93 2.18
8367 10502 7.016268 CCCTTGGAGGTATATTTAGTGCTAAGA 59.984 40.741 0.00 0.00 31.93 2.10
8368 10503 8.091449 CCTTGGAGGTATATTTAGTGCTAAGAG 58.909 40.741 0.00 0.00 0.00 2.85
8369 10504 6.994221 TGGAGGTATATTTAGTGCTAAGAGC 58.006 40.000 0.00 0.00 42.82 4.09
8381 10516 2.208431 GCTAAGAGCACTGCTATGTGG 58.792 52.381 2.71 0.00 41.89 4.17
8382 10517 2.159043 GCTAAGAGCACTGCTATGTGGA 60.159 50.000 2.71 0.00 41.89 4.02
8383 10518 2.393271 AAGAGCACTGCTATGTGGAC 57.607 50.000 2.71 0.00 39.88 4.02
8384 10519 0.174389 AGAGCACTGCTATGTGGACG 59.826 55.000 2.71 0.00 39.88 4.79
8385 10520 0.173481 GAGCACTGCTATGTGGACGA 59.827 55.000 2.71 0.00 39.88 4.20
8386 10521 0.108615 AGCACTGCTATGTGGACGAC 60.109 55.000 0.21 0.00 36.99 4.34
8387 10522 0.389817 GCACTGCTATGTGGACGACA 60.390 55.000 0.00 0.00 39.53 4.35
8388 10523 4.855123 AGCACTGCTATGTGGACGACAC 62.855 54.545 0.21 7.82 43.58 3.67
8399 10534 2.612604 TGGACGACACATATTTGGACG 58.387 47.619 0.00 8.42 0.00 4.79
8400 10535 2.231721 TGGACGACACATATTTGGACGA 59.768 45.455 14.29 0.00 0.00 4.20
8401 10536 3.118920 TGGACGACACATATTTGGACGAT 60.119 43.478 14.29 3.26 0.00 3.73
8402 10537 3.869246 GGACGACACATATTTGGACGATT 59.131 43.478 14.29 0.00 0.00 3.34
8403 10538 4.331717 GGACGACACATATTTGGACGATTT 59.668 41.667 14.29 0.00 0.00 2.17
8404 10539 5.216566 ACGACACATATTTGGACGATTTG 57.783 39.130 14.29 0.00 0.00 2.32
8405 10540 4.028383 CGACACATATTTGGACGATTTGC 58.972 43.478 0.00 0.00 0.00 3.68
8406 10541 4.436718 CGACACATATTTGGACGATTTGCA 60.437 41.667 0.00 0.00 0.00 4.08
8407 10542 4.985413 ACACATATTTGGACGATTTGCAG 58.015 39.130 0.00 0.00 0.00 4.41
8408 10543 4.699735 ACACATATTTGGACGATTTGCAGA 59.300 37.500 0.00 0.00 0.00 4.26
8409 10544 5.030295 CACATATTTGGACGATTTGCAGAC 58.970 41.667 0.00 0.00 0.00 3.51
8410 10545 2.900122 ATTTGGACGATTTGCAGACG 57.100 45.000 0.00 7.49 0.00 4.18
8411 10546 1.872388 TTTGGACGATTTGCAGACGA 58.128 45.000 14.13 0.00 0.00 4.20
8412 10547 2.093306 TTGGACGATTTGCAGACGAT 57.907 45.000 14.13 0.00 0.00 3.73
8413 10548 1.358877 TGGACGATTTGCAGACGATG 58.641 50.000 14.13 0.00 0.00 3.84
8414 10549 1.067213 TGGACGATTTGCAGACGATGA 60.067 47.619 14.13 0.00 0.00 2.92
8415 10550 2.205074 GGACGATTTGCAGACGATGAT 58.795 47.619 14.13 0.00 0.00 2.45
8416 10551 2.609459 GGACGATTTGCAGACGATGATT 59.391 45.455 14.13 0.00 0.00 2.57
8417 10552 3.802139 GGACGATTTGCAGACGATGATTA 59.198 43.478 14.13 0.00 0.00 1.75
8418 10553 4.318121 GGACGATTTGCAGACGATGATTAC 60.318 45.833 14.13 0.00 0.00 1.89
8419 10554 4.180817 ACGATTTGCAGACGATGATTACA 58.819 39.130 14.13 0.00 0.00 2.41
8420 10555 4.811024 ACGATTTGCAGACGATGATTACAT 59.189 37.500 14.13 0.00 39.67 2.29
8421 10556 5.050769 ACGATTTGCAGACGATGATTACATC 60.051 40.000 14.13 0.00 46.50 3.06
8429 10564 0.792640 GATGATTACATCCAGCGGCG 59.207 55.000 0.51 0.51 44.89 6.46
8430 10565 0.603707 ATGATTACATCCAGCGGCGG 60.604 55.000 9.78 4.77 29.98 6.13
8431 10566 1.069090 GATTACATCCAGCGGCGGA 59.931 57.895 9.78 14.19 40.07 5.54
8432 10567 0.531974 GATTACATCCAGCGGCGGAA 60.532 55.000 9.78 2.50 38.95 4.30
8433 10568 0.814010 ATTACATCCAGCGGCGGAAC 60.814 55.000 9.78 0.00 38.95 3.62
8434 10569 2.862674 TTACATCCAGCGGCGGAACC 62.863 60.000 9.78 0.00 38.95 3.62
8435 10570 4.473520 CATCCAGCGGCGGAACCT 62.474 66.667 9.78 0.00 38.95 3.50
8436 10571 3.717294 ATCCAGCGGCGGAACCTT 61.717 61.111 9.78 0.00 38.95 3.50
8437 10572 3.976701 ATCCAGCGGCGGAACCTTG 62.977 63.158 9.78 0.00 38.95 3.61
8439 10574 3.423154 CAGCGGCGGAACCTTGTC 61.423 66.667 9.78 0.00 35.61 3.18
8440 10575 4.699522 AGCGGCGGAACCTTGTCC 62.700 66.667 9.78 0.00 35.61 4.02
8442 10577 2.281208 CGGCGGAACCTTGTCCAA 60.281 61.111 0.00 0.00 37.56 3.53
8443 10578 1.894756 CGGCGGAACCTTGTCCAAA 60.895 57.895 0.00 0.00 37.56 3.28
8444 10579 1.852067 CGGCGGAACCTTGTCCAAAG 61.852 60.000 0.00 0.00 37.56 2.77
8445 10580 1.285950 GCGGAACCTTGTCCAAAGC 59.714 57.895 0.00 0.00 37.56 3.51
8446 10581 1.956802 CGGAACCTTGTCCAAAGCC 59.043 57.895 0.00 0.00 37.56 4.35
8447 10582 1.852067 CGGAACCTTGTCCAAAGCCG 61.852 60.000 0.00 0.00 37.56 5.52
8448 10583 0.536460 GGAACCTTGTCCAAAGCCGA 60.536 55.000 0.00 0.00 37.65 5.54
8449 10584 1.314730 GAACCTTGTCCAAAGCCGAA 58.685 50.000 0.00 0.00 0.00 4.30
8450 10585 1.001706 GAACCTTGTCCAAAGCCGAAC 60.002 52.381 0.00 0.00 0.00 3.95
8451 10586 0.106918 ACCTTGTCCAAAGCCGAACA 60.107 50.000 0.00 0.00 0.00 3.18
8452 10587 1.028905 CCTTGTCCAAAGCCGAACAA 58.971 50.000 0.00 0.00 0.00 2.83
8453 10588 1.269051 CCTTGTCCAAAGCCGAACAAC 60.269 52.381 0.00 0.00 0.00 3.32
8454 10589 1.403679 CTTGTCCAAAGCCGAACAACA 59.596 47.619 0.00 0.00 0.00 3.33
8455 10590 1.021202 TGTCCAAAGCCGAACAACAG 58.979 50.000 0.00 0.00 0.00 3.16
8456 10591 0.317854 GTCCAAAGCCGAACAACAGC 60.318 55.000 0.00 0.00 0.00 4.40
8457 10592 1.007387 CCAAAGCCGAACAACAGCC 60.007 57.895 0.00 0.00 0.00 4.85
8458 10593 1.370414 CAAAGCCGAACAACAGCCG 60.370 57.895 0.00 0.00 0.00 5.52
8459 10594 3.194272 AAAGCCGAACAACAGCCGC 62.194 57.895 0.00 0.00 0.00 6.53
8460 10595 4.626081 AGCCGAACAACAGCCGCT 62.626 61.111 0.00 0.00 0.00 5.52
8461 10596 4.389576 GCCGAACAACAGCCGCTG 62.390 66.667 19.08 19.08 37.52 5.18
8462 10597 3.726517 CCGAACAACAGCCGCTGG 61.727 66.667 24.03 9.98 35.51 4.85
8463 10598 2.664851 CGAACAACAGCCGCTGGA 60.665 61.111 24.03 0.00 35.51 3.86
8464 10599 2.034879 CGAACAACAGCCGCTGGAT 61.035 57.895 24.03 10.03 35.51 3.41
8465 10600 1.577328 CGAACAACAGCCGCTGGATT 61.577 55.000 24.03 14.33 35.51 3.01
8466 10601 0.169009 GAACAACAGCCGCTGGATTC 59.831 55.000 24.03 18.33 35.51 2.52
8467 10602 0.250901 AACAACAGCCGCTGGATTCT 60.251 50.000 24.03 0.00 35.51 2.40
8468 10603 0.250901 ACAACAGCCGCTGGATTCTT 60.251 50.000 24.03 6.35 35.51 2.52
8469 10604 0.883833 CAACAGCCGCTGGATTCTTT 59.116 50.000 24.03 5.63 35.51 2.52
8470 10605 2.083774 CAACAGCCGCTGGATTCTTTA 58.916 47.619 24.03 0.00 35.51 1.85
8471 10606 2.029838 ACAGCCGCTGGATTCTTTAG 57.970 50.000 24.03 0.00 35.51 1.85
8472 10607 1.279271 ACAGCCGCTGGATTCTTTAGT 59.721 47.619 24.03 0.00 35.51 2.24
8473 10608 1.936547 CAGCCGCTGGATTCTTTAGTC 59.063 52.381 12.93 0.00 0.00 2.59
8474 10609 0.931005 GCCGCTGGATTCTTTAGTCG 59.069 55.000 0.00 0.00 0.00 4.18
8475 10610 1.739371 GCCGCTGGATTCTTTAGTCGT 60.739 52.381 0.00 0.00 0.00 4.34
8476 10611 1.927174 CCGCTGGATTCTTTAGTCGTG 59.073 52.381 0.00 0.00 0.00 4.35
8477 10612 1.324736 CGCTGGATTCTTTAGTCGTGC 59.675 52.381 0.00 0.00 0.00 5.34
8478 10613 2.346803 GCTGGATTCTTTAGTCGTGCA 58.653 47.619 0.00 0.00 0.00 4.57
8479 10614 2.094417 GCTGGATTCTTTAGTCGTGCAC 59.906 50.000 6.82 6.82 0.00 4.57
8480 10615 3.325870 CTGGATTCTTTAGTCGTGCACA 58.674 45.455 18.64 0.81 0.00 4.57
8481 10616 3.734463 TGGATTCTTTAGTCGTGCACAA 58.266 40.909 18.64 0.00 0.00 3.33
8482 10617 4.130857 TGGATTCTTTAGTCGTGCACAAA 58.869 39.130 18.64 8.70 0.00 2.83
8483 10618 4.759693 TGGATTCTTTAGTCGTGCACAAAT 59.240 37.500 18.64 0.00 0.00 2.32
8484 10619 5.106712 TGGATTCTTTAGTCGTGCACAAATC 60.107 40.000 18.64 10.94 0.00 2.17
8485 10620 5.106712 GGATTCTTTAGTCGTGCACAAATCA 60.107 40.000 18.64 0.00 0.00 2.57
8486 10621 5.940192 TTCTTTAGTCGTGCACAAATCAT 57.060 34.783 18.64 0.00 0.00 2.45
8487 10622 5.530519 TCTTTAGTCGTGCACAAATCATC 57.469 39.130 18.64 0.00 0.00 2.92
8488 10623 5.237815 TCTTTAGTCGTGCACAAATCATCT 58.762 37.500 18.64 6.20 0.00 2.90
8489 10624 6.394809 TCTTTAGTCGTGCACAAATCATCTA 58.605 36.000 18.64 5.28 0.00 1.98
8490 10625 6.531594 TCTTTAGTCGTGCACAAATCATCTAG 59.468 38.462 18.64 2.87 0.00 2.43
8491 10626 4.456280 AGTCGTGCACAAATCATCTAGA 57.544 40.909 18.64 0.00 0.00 2.43
8492 10627 4.820897 AGTCGTGCACAAATCATCTAGAA 58.179 39.130 18.64 0.00 0.00 2.10
8493 10628 5.423015 AGTCGTGCACAAATCATCTAGAAT 58.577 37.500 18.64 0.00 0.00 2.40
8494 10629 5.877012 AGTCGTGCACAAATCATCTAGAATT 59.123 36.000 18.64 0.00 0.00 2.17
8495 10630 6.372659 AGTCGTGCACAAATCATCTAGAATTT 59.627 34.615 18.64 0.00 0.00 1.82
8496 10631 6.467047 GTCGTGCACAAATCATCTAGAATTTG 59.533 38.462 20.86 20.86 39.24 2.32
8497 10632 6.149308 TCGTGCACAAATCATCTAGAATTTGT 59.851 34.615 21.84 21.84 44.91 2.83
8498 10633 6.467047 CGTGCACAAATCATCTAGAATTTGTC 59.533 38.462 23.60 19.34 42.99 3.18
8499 10634 6.467047 GTGCACAAATCATCTAGAATTTGTCG 59.533 38.462 23.60 20.05 42.99 4.35
8500 10635 6.149308 TGCACAAATCATCTAGAATTTGTCGT 59.851 34.615 23.60 8.35 42.99 4.34
8501 10636 6.467047 GCACAAATCATCTAGAATTTGTCGTG 59.533 38.462 23.60 17.04 42.99 4.35
8502 10637 7.521529 CACAAATCATCTAGAATTTGTCGTGT 58.478 34.615 23.60 8.36 42.99 4.49
8503 10638 7.479603 CACAAATCATCTAGAATTTGTCGTGTG 59.520 37.037 23.60 14.34 42.99 3.82
8504 10639 7.173218 ACAAATCATCTAGAATTTGTCGTGTGT 59.827 33.333 21.84 6.28 41.65 3.72
8505 10640 6.653273 ATCATCTAGAATTTGTCGTGTGTG 57.347 37.500 0.00 0.00 0.00 3.82
8506 10641 4.929211 TCATCTAGAATTTGTCGTGTGTGG 59.071 41.667 0.00 0.00 0.00 4.17
8507 10642 4.594123 TCTAGAATTTGTCGTGTGTGGA 57.406 40.909 0.00 0.00 0.00 4.02
8508 10643 4.556233 TCTAGAATTTGTCGTGTGTGGAG 58.444 43.478 0.00 0.00 0.00 3.86
8509 10644 1.873591 AGAATTTGTCGTGTGTGGAGC 59.126 47.619 0.00 0.00 0.00 4.70
8510 10645 1.601903 GAATTTGTCGTGTGTGGAGCA 59.398 47.619 0.00 0.00 0.00 4.26
8511 10646 1.229428 ATTTGTCGTGTGTGGAGCAG 58.771 50.000 0.00 0.00 0.00 4.24
8512 10647 0.107897 TTTGTCGTGTGTGGAGCAGT 60.108 50.000 0.00 0.00 0.00 4.40
8513 10648 0.107897 TTGTCGTGTGTGGAGCAGTT 60.108 50.000 0.00 0.00 0.00 3.16
8514 10649 0.529773 TGTCGTGTGTGGAGCAGTTC 60.530 55.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.616956 TTCCATGTTCCTAGCTCACTG 57.383 47.619 0.00 0.00 0.00 3.66
112 113 9.677567 GTACATTGCAACAGAAGAAGAAAAATA 57.322 29.630 0.00 0.00 0.00 1.40
114 115 7.542890 TGTACATTGCAACAGAAGAAGAAAAA 58.457 30.769 0.00 0.00 0.00 1.94
119 122 9.630098 ATTTTATGTACATTGCAACAGAAGAAG 57.370 29.630 14.77 0.00 29.45 2.85
124 128 6.923012 AGCATTTTATGTACATTGCAACAGA 58.077 32.000 24.78 0.51 32.66 3.41
150 154 7.094463 ACCTCTGCTCAAAAATCTTTACATCAG 60.094 37.037 0.00 0.00 0.00 2.90
161 165 5.165961 TGCTAGTACCTCTGCTCAAAAAT 57.834 39.130 0.00 0.00 0.00 1.82
222 226 3.907474 TCTCACAGTATTCCCTCCAACAA 59.093 43.478 0.00 0.00 0.00 2.83
261 265 9.484806 AAAAGAACCCATATCTTCATCTTTCAT 57.515 29.630 0.00 0.00 36.14 2.57
380 471 2.859806 GCATATGCAATGTCGAAAGGGC 60.860 50.000 22.84 0.00 41.59 5.19
382 473 3.976793 AGCATATGCAATGTCGAAAGG 57.023 42.857 28.62 0.00 45.16 3.11
443 535 4.323417 TGCACAGACTTAATTTCACGGAT 58.677 39.130 0.00 0.00 0.00 4.18
542 635 1.141019 GCGAGCCACCTATTCACGA 59.859 57.895 0.00 0.00 0.00 4.35
566 660 1.272490 CTTGCCCTCTTCGTCACAGTA 59.728 52.381 0.00 0.00 0.00 2.74
569 663 1.272490 CTACTTGCCCTCTTCGTCACA 59.728 52.381 0.00 0.00 0.00 3.58
588 682 1.376424 CTGAGCCATCCGTGTTGCT 60.376 57.895 0.00 0.00 36.62 3.91
595 689 1.299468 GTCGCTACTGAGCCATCCG 60.299 63.158 0.00 0.00 46.86 4.18
606 700 0.584876 AAACAAAGCCACGTCGCTAC 59.415 50.000 8.45 0.00 38.44 3.58
612 706 1.164041 CGGGAGAAACAAAGCCACGT 61.164 55.000 0.00 0.00 0.00 4.49
618 712 2.099098 AGTTGCAACGGGAGAAACAAAG 59.901 45.455 23.21 0.00 0.00 2.77
631 725 0.818040 AAGGGTCCGTGAGTTGCAAC 60.818 55.000 22.17 22.17 0.00 4.17
637 731 1.002087 CTAGCAAAAGGGTCCGTGAGT 59.998 52.381 0.00 0.00 0.00 3.41
639 733 1.053424 ACTAGCAAAAGGGTCCGTGA 58.947 50.000 0.00 0.00 0.00 4.35
642 736 4.761975 TGTATTACTAGCAAAAGGGTCCG 58.238 43.478 0.00 0.00 0.00 4.79
645 739 8.644374 TCATTTTGTATTACTAGCAAAAGGGT 57.356 30.769 13.47 0.00 42.74 4.34
690 784 9.418839 TCATGTATTATTGGAACCATCATGAAA 57.581 29.630 0.00 0.00 37.03 2.69
691 785 8.993404 TCATGTATTATTGGAACCATCATGAA 57.007 30.769 0.00 0.00 37.03 2.57
692 786 9.590828 AATCATGTATTATTGGAACCATCATGA 57.409 29.630 0.00 0.00 41.62 3.07
693 787 9.634163 CAATCATGTATTATTGGAACCATCATG 57.366 33.333 0.00 0.00 33.74 3.07
694 788 9.590828 TCAATCATGTATTATTGGAACCATCAT 57.409 29.630 5.34 0.00 34.52 2.45
695 789 8.993404 TCAATCATGTATTATTGGAACCATCA 57.007 30.769 5.34 0.00 34.52 3.07
790 884 3.784202 AGGTACTCCCCCGTTTCATAATT 59.216 43.478 0.00 0.00 0.00 1.40
792 886 2.836667 AGGTACTCCCCCGTTTCATAA 58.163 47.619 0.00 0.00 0.00 1.90
813 907 7.665559 TCTCAACTTGTACAGCTTCCAAATATT 59.334 33.333 0.00 0.00 0.00 1.28
830 924 1.952296 AGTTTGCTGCCTCTCAACTTG 59.048 47.619 0.00 0.00 0.00 3.16
832 926 3.492102 TTAGTTTGCTGCCTCTCAACT 57.508 42.857 0.00 0.79 0.00 3.16
833 927 3.181516 CGATTAGTTTGCTGCCTCTCAAC 60.182 47.826 0.00 0.00 0.00 3.18
835 929 2.233676 TCGATTAGTTTGCTGCCTCTCA 59.766 45.455 0.00 0.00 0.00 3.27
836 930 2.863137 CTCGATTAGTTTGCTGCCTCTC 59.137 50.000 0.00 0.00 0.00 3.20
837 931 2.898705 CTCGATTAGTTTGCTGCCTCT 58.101 47.619 0.00 0.00 0.00 3.69
1191 1285 0.329596 AATCGAAGGGGAAGCAAGCT 59.670 50.000 0.00 0.00 0.00 3.74
1339 1433 6.096423 ACGAGGTTTGTCTATTGATGCTACTA 59.904 38.462 0.00 0.00 0.00 1.82
1412 1509 3.403038 CAGGGAAACGAACAAGACAGAT 58.597 45.455 0.00 0.00 0.00 2.90
1597 1704 2.530460 AGCATTGTATGGGGCTTTCA 57.470 45.000 0.00 0.00 31.34 2.69
1598 1705 4.584325 TCAATAGCATTGTATGGGGCTTTC 59.416 41.667 0.00 0.00 37.79 2.62
1599 1706 4.545678 TCAATAGCATTGTATGGGGCTTT 58.454 39.130 0.00 0.00 37.79 3.51
1600 1707 4.147321 CTCAATAGCATTGTATGGGGCTT 58.853 43.478 0.00 0.00 37.79 4.35
1601 1708 3.139025 ACTCAATAGCATTGTATGGGGCT 59.861 43.478 8.19 0.00 40.26 5.19
1605 1712 6.772716 ACCCTTTACTCAATAGCATTGTATGG 59.227 38.462 8.19 0.00 0.00 2.74
1607 1714 7.499232 GTGACCCTTTACTCAATAGCATTGTAT 59.501 37.037 8.19 2.68 0.00 2.29
1608 1715 6.821665 GTGACCCTTTACTCAATAGCATTGTA 59.178 38.462 8.19 0.00 0.00 2.41
1610 1717 5.882557 AGTGACCCTTTACTCAATAGCATTG 59.117 40.000 3.36 3.36 0.00 2.82
1611 1718 6.067217 AGTGACCCTTTACTCAATAGCATT 57.933 37.500 0.00 0.00 0.00 3.56
1612 1719 5.700402 AGTGACCCTTTACTCAATAGCAT 57.300 39.130 0.00 0.00 0.00 3.79
1613 1720 5.499004 AAGTGACCCTTTACTCAATAGCA 57.501 39.130 0.00 0.00 0.00 3.49
1614 1721 5.705905 ACAAAGTGACCCTTTACTCAATAGC 59.294 40.000 0.00 0.00 41.51 2.97
1615 1722 7.745620 AACAAAGTGACCCTTTACTCAATAG 57.254 36.000 0.00 0.00 41.51 1.73
1616 1723 8.528044 AAAACAAAGTGACCCTTTACTCAATA 57.472 30.769 0.00 0.00 41.51 1.90
1617 1724 7.418337 AAAACAAAGTGACCCTTTACTCAAT 57.582 32.000 0.00 0.00 41.51 2.57
1619 1726 6.661805 AGAAAAACAAAGTGACCCTTTACTCA 59.338 34.615 0.00 0.00 41.51 3.41
1620 1727 6.972901 CAGAAAAACAAAGTGACCCTTTACTC 59.027 38.462 0.00 0.00 41.51 2.59
1621 1728 6.627287 GCAGAAAAACAAAGTGACCCTTTACT 60.627 38.462 0.00 0.00 41.51 2.24
1622 1729 5.518847 GCAGAAAAACAAAGTGACCCTTTAC 59.481 40.000 0.00 0.00 41.51 2.01
1623 1730 5.186021 TGCAGAAAAACAAAGTGACCCTTTA 59.814 36.000 0.00 0.00 41.51 1.85
1624 1731 4.020662 TGCAGAAAAACAAAGTGACCCTTT 60.021 37.500 0.00 0.00 44.30 3.11
1626 1733 3.096092 TGCAGAAAAACAAAGTGACCCT 58.904 40.909 0.00 0.00 0.00 4.34
1628 1735 7.367285 TGTATATGCAGAAAAACAAAGTGACC 58.633 34.615 0.00 0.00 0.00 4.02
1631 1738 6.862608 TGCTGTATATGCAGAAAAACAAAGTG 59.137 34.615 23.23 0.00 38.70 3.16
1632 1739 6.980593 TGCTGTATATGCAGAAAAACAAAGT 58.019 32.000 23.23 0.00 38.70 2.66
1633 1740 8.377681 CAATGCTGTATATGCAGAAAAACAAAG 58.622 33.333 23.23 5.77 44.04 2.77
1634 1741 8.087136 TCAATGCTGTATATGCAGAAAAACAAA 58.913 29.630 23.23 1.16 44.04 2.83
1635 1742 7.541783 GTCAATGCTGTATATGCAGAAAAACAA 59.458 33.333 23.23 0.76 44.04 2.83
1636 1743 7.028962 GTCAATGCTGTATATGCAGAAAAACA 58.971 34.615 23.23 11.82 44.04 2.83
1637 1744 7.008628 GTGTCAATGCTGTATATGCAGAAAAAC 59.991 37.037 23.23 12.98 44.04 2.43
1638 1745 7.028962 GTGTCAATGCTGTATATGCAGAAAAA 58.971 34.615 23.23 6.68 44.04 1.94
1639 1746 6.554419 GTGTCAATGCTGTATATGCAGAAAA 58.446 36.000 23.23 8.98 44.04 2.29
1640 1747 5.220643 CGTGTCAATGCTGTATATGCAGAAA 60.221 40.000 23.23 11.31 44.04 2.52
1641 1748 4.270808 CGTGTCAATGCTGTATATGCAGAA 59.729 41.667 23.23 14.40 44.04 3.02
1642 1749 3.803778 CGTGTCAATGCTGTATATGCAGA 59.196 43.478 23.23 9.64 44.04 4.26
1643 1750 3.803778 TCGTGTCAATGCTGTATATGCAG 59.196 43.478 15.77 15.77 44.04 4.41
1644 1751 3.791245 TCGTGTCAATGCTGTATATGCA 58.209 40.909 5.96 5.96 44.95 3.96
1645 1752 4.997905 ATCGTGTCAATGCTGTATATGC 57.002 40.909 0.00 0.00 0.00 3.14
1646 1753 7.643528 ACTAATCGTGTCAATGCTGTATATG 57.356 36.000 0.00 0.00 0.00 1.78
1647 1754 8.662781 AAACTAATCGTGTCAATGCTGTATAT 57.337 30.769 0.00 0.00 0.00 0.86
1649 1756 6.985188 AAACTAATCGTGTCAATGCTGTAT 57.015 33.333 0.00 0.00 0.00 2.29
1650 1757 7.094631 ACTAAACTAATCGTGTCAATGCTGTA 58.905 34.615 0.00 0.00 0.00 2.74
1651 1758 5.932303 ACTAAACTAATCGTGTCAATGCTGT 59.068 36.000 0.00 0.00 0.00 4.40
1652 1759 6.408858 ACTAAACTAATCGTGTCAATGCTG 57.591 37.500 0.00 0.00 0.00 4.41
1654 1761 5.350365 TGGACTAAACTAATCGTGTCAATGC 59.650 40.000 0.00 0.00 0.00 3.56
1655 1762 6.961359 TGGACTAAACTAATCGTGTCAATG 57.039 37.500 0.00 0.00 0.00 2.82
1656 1763 7.359765 CGTTTGGACTAAACTAATCGTGTCAAT 60.360 37.037 11.99 0.00 45.14 2.57
1658 1765 5.403166 CGTTTGGACTAAACTAATCGTGTCA 59.597 40.000 11.99 0.00 45.14 3.58
1659 1766 5.403466 ACGTTTGGACTAAACTAATCGTGTC 59.597 40.000 11.99 0.00 45.14 3.67
1660 1767 5.291971 ACGTTTGGACTAAACTAATCGTGT 58.708 37.500 11.99 0.00 45.14 4.49
1661 1768 5.834239 ACGTTTGGACTAAACTAATCGTG 57.166 39.130 11.99 0.00 45.14 4.35
1662 1769 8.437742 CAAATACGTTTGGACTAAACTAATCGT 58.562 33.333 11.99 7.32 45.14 3.73
1663 1770 8.649841 TCAAATACGTTTGGACTAAACTAATCG 58.350 33.333 11.99 2.01 45.14 3.34
1668 1775 9.498176 AAGTATCAAATACGTTTGGACTAAACT 57.502 29.630 11.99 3.11 45.14 2.66
1710 1817 4.220602 ACCCTGAAAGATACAAAACATGCC 59.779 41.667 0.00 0.00 34.07 4.40
1914 2021 8.380743 ACGTAGTTACAAATTACAACAATGGA 57.619 30.769 0.00 0.00 37.78 3.41
2001 2108 6.540438 TGGTAAGAGTCCTTGATAAACGAT 57.460 37.500 0.00 0.00 33.94 3.73
2124 2231 4.389077 CACTGACCGTTAAGAAGGTGATTC 59.611 45.833 2.31 0.00 41.51 2.52
2417 2524 3.066760 GGTAGTACCATTCAAATGCCTGC 59.933 47.826 14.82 0.00 38.42 4.85
2452 2559 2.128771 ATCAAAACAGCTGGCCGTAT 57.871 45.000 19.93 2.95 0.00 3.06
2540 2647 4.487282 TTGGTAGCTAGTCCAGGGATAT 57.513 45.455 0.00 0.00 35.05 1.63
2541 2648 3.985553 TTGGTAGCTAGTCCAGGGATA 57.014 47.619 0.00 0.00 35.05 2.59
2542 2649 2.868964 TTGGTAGCTAGTCCAGGGAT 57.131 50.000 0.00 0.00 35.05 3.85
2543 2650 2.868964 ATTGGTAGCTAGTCCAGGGA 57.131 50.000 0.00 0.00 35.05 4.20
2544 2651 3.967987 ACTTATTGGTAGCTAGTCCAGGG 59.032 47.826 0.00 0.00 35.05 4.45
2545 2652 6.919775 ATACTTATTGGTAGCTAGTCCAGG 57.080 41.667 0.00 0.00 35.05 4.45
2708 2867 2.936919 TCTGAACATGGCACTTCACT 57.063 45.000 5.53 0.00 0.00 3.41
2858 3017 2.692557 AGCACTCTACCAGCTGTATCAG 59.307 50.000 13.81 5.74 37.20 2.90
2953 3112 9.638300 GTATCAAGATAAAAGTTTAGCACATCG 57.362 33.333 2.26 0.00 31.80 3.84
3198 3357 7.162082 ACAACCCAAAAGTGACAACAAATAAA 58.838 30.769 0.00 0.00 0.00 1.40
3353 3512 6.878389 ACCAATCAAACAAAAGAATTGTGTGT 59.122 30.769 10.39 0.00 38.46 3.72
3405 3564 2.290531 ATCAGTGAGACATGTCTGCG 57.709 50.000 32.50 16.72 40.61 5.18
3523 3682 2.557924 TGCTAGAACCACCTGCAAAATG 59.442 45.455 0.00 0.00 0.00 2.32
3731 3890 7.004555 TCTTCAAAGCTCCACAGTTCTTATA 57.995 36.000 0.00 0.00 0.00 0.98
3790 3949 5.004535 CACGCTCTTTACCTATCGAAAGTTC 59.995 44.000 0.00 0.00 34.81 3.01
3802 3961 0.389426 TTCGGCTCACGCTCTTTACC 60.389 55.000 0.00 0.00 43.86 2.85
3812 3971 1.743252 CCTTCAGGCTTCGGCTCAC 60.743 63.158 0.00 0.00 41.44 3.51
3932 4092 7.028098 TTTGCACTCAAATCTATGGGACATGA 61.028 38.462 0.00 0.00 39.28 3.07
3933 4093 5.125900 TTTGCACTCAAATCTATGGGACATG 59.874 40.000 0.00 0.00 39.28 3.21
3934 4094 5.263599 TTTGCACTCAAATCTATGGGACAT 58.736 37.500 0.00 0.00 39.28 3.06
3935 4095 4.661222 TTTGCACTCAAATCTATGGGACA 58.339 39.130 0.00 0.00 39.14 4.02
3936 4096 4.943705 TCTTTGCACTCAAATCTATGGGAC 59.056 41.667 0.00 0.00 40.97 4.46
3937 4097 5.178096 TCTTTGCACTCAAATCTATGGGA 57.822 39.130 0.00 0.00 40.97 4.37
3938 4098 4.946157 ACTCTTTGCACTCAAATCTATGGG 59.054 41.667 0.00 0.00 40.97 4.00
3977 4137 3.242518 TGCGAGAATTCTGTACTGAACG 58.757 45.455 14.00 15.39 0.00 3.95
3981 4141 6.643845 CATACAATGCGAGAATTCTGTACTG 58.356 40.000 14.00 7.65 0.00 2.74
4417 4616 6.526526 AGGAGAAAAGGAACAGAAGTAGAAC 58.473 40.000 0.00 0.00 0.00 3.01
4521 4720 5.741388 AGAAGTGAAACAACAGATGTGTC 57.259 39.130 0.00 0.00 45.19 3.67
4596 4795 6.800408 CGGAGGTAGTACGACATATTACATTG 59.200 42.308 8.44 0.00 29.57 2.82
4622 4821 5.621228 CGTTTGAGCAACAGTAATTTCTGAC 59.379 40.000 17.85 7.52 38.63 3.51
4623 4822 5.747565 CGTTTGAGCAACAGTAATTTCTGA 58.252 37.500 17.85 0.00 38.63 3.27
4645 4844 6.086896 CACTGAAATACGTCTAGATACATGCG 59.913 42.308 0.00 0.00 0.00 4.73
4682 4881 6.018180 GTCCAGAAATAACTGTCGTTCAAACT 60.018 38.462 0.00 0.00 36.30 2.66
4995 5195 4.718940 AGTTTCCTGTGTTTTCCACTTG 57.281 40.909 0.00 0.00 44.81 3.16
5147 5350 1.403914 CGTGCTGAGCTCTCATCAAGT 60.404 52.381 16.19 0.00 37.45 3.16
5224 5427 6.051717 CAGAGACAAAAAGAAGAGACAGGAA 58.948 40.000 0.00 0.00 0.00 3.36
5386 5601 7.537715 CCACATGAGCAATAACTGATTTTACA 58.462 34.615 0.00 0.00 0.00 2.41
5493 5708 2.747436 CAAACAAAGAAGGGAGCAAGC 58.253 47.619 0.00 0.00 0.00 4.01
5782 6004 5.227569 TGAGAAGAGGTTTAGAATGTGCA 57.772 39.130 0.00 0.00 0.00 4.57
5824 6046 4.606071 GCTTCTGCTGATCCGTGT 57.394 55.556 0.00 0.00 36.03 4.49
5914 6136 9.390795 GCACATAAATCTGATGTTACATCAATC 57.609 33.333 25.40 3.27 35.31 2.67
5978 6200 0.811915 GTCCTAAGTCGAGCTCTGCA 59.188 55.000 12.85 0.00 0.00 4.41
5987 6209 4.183865 TGCTTTCATGATGTCCTAAGTCG 58.816 43.478 0.00 0.00 0.00 4.18
5988 6210 5.065731 CCTTGCTTTCATGATGTCCTAAGTC 59.934 44.000 0.00 0.00 0.00 3.01
5997 6220 3.952323 AGGATGACCTTGCTTTCATGATG 59.048 43.478 0.00 0.00 45.36 3.07
6040 6266 1.133790 GGGTGCATTGACTTCAGATGC 59.866 52.381 14.41 14.41 44.81 3.91
6326 6557 7.934120 ACACTAAGGGAATCAAATATAGCTCAC 59.066 37.037 0.00 0.00 0.00 3.51
6480 6718 5.428253 TCTGAATGGGCATGAGTACTTTAC 58.572 41.667 0.00 0.00 0.00 2.01
6695 6946 1.976404 TGGCCAAGATTTTGCATGGAA 59.024 42.857 0.61 0.00 34.82 3.53
6742 6994 6.296026 AGCAAGTAAATGTGGTTGAAGACTA 58.704 36.000 0.00 0.00 0.00 2.59
6805 7124 2.624838 CTCACCCAACTGCAGAAAATGT 59.375 45.455 23.35 7.75 0.00 2.71
7015 7354 4.096190 AGGATGACTAAGGGATGCAATG 57.904 45.455 0.00 0.00 0.00 2.82
7045 7386 3.988819 TGCACATTCTAAAGCCAAAACC 58.011 40.909 0.00 0.00 0.00 3.27
7075 7416 6.100668 GGTCTCAAGTACATAACCAGAGAAC 58.899 44.000 0.00 0.00 39.10 3.01
7088 7432 6.043411 AGCATTAGATTTCGGTCTCAAGTAC 58.957 40.000 0.00 0.00 0.00 2.73
7306 7810 4.693283 TGCTTGATCTATGGTAAGTTCCG 58.307 43.478 0.00 0.00 0.00 4.30
7312 7816 9.276590 CAGTTTATCATGCTTGATCTATGGTAA 57.723 33.333 17.60 3.43 41.73 2.85
7339 7843 3.351740 TGAGGCGGCATAAATTGAAAGA 58.648 40.909 13.08 0.00 0.00 2.52
7354 7869 4.375272 AGAATCATACATGAACTGAGGCG 58.625 43.478 0.00 0.00 40.69 5.52
7359 7874 6.957635 CACAAACGAGAATCATACATGAACTG 59.042 38.462 0.00 0.00 40.69 3.16
7360 7875 6.650807 ACACAAACGAGAATCATACATGAACT 59.349 34.615 0.00 0.00 40.69 3.01
7377 7892 1.781025 ATGTCACGGGCACACAAACG 61.781 55.000 0.00 0.00 0.00 3.60
7499 8016 5.050023 GCTTGACCTCTACAACAAGAAGAAC 60.050 44.000 0.00 0.00 41.16 3.01
7648 9735 3.251972 TGAATGCACAAATGACGTTAGCA 59.748 39.130 0.00 0.00 34.78 3.49
7685 9772 7.122501 ACACACATGCCACAGAAATATGAAATA 59.877 33.333 0.00 0.00 0.00 1.40
7770 9890 8.020819 CGTAATGATACATTTGTTGTGTTTCCT 58.979 33.333 2.40 0.00 39.48 3.36
7801 9921 5.519722 GTGGTTCACCTAAACATGAACTTG 58.480 41.667 14.72 0.00 37.07 3.16
7872 9997 4.399303 AGTTGGAAGATATTCCCGCAAAAG 59.601 41.667 16.39 0.00 40.39 2.27
8170 10305 6.170675 AGATTCACTCATTTTGCTTCGTAC 57.829 37.500 0.00 0.00 0.00 3.67
8265 10400 8.154649 AGTGTTCTGAAATACTTCATTCGTTT 57.845 30.769 0.00 0.00 40.78 3.60
8270 10405 7.661437 TGTGCTAGTGTTCTGAAATACTTCATT 59.339 33.333 12.07 0.00 40.78 2.57
8272 10407 6.521162 TGTGCTAGTGTTCTGAAATACTTCA 58.479 36.000 12.07 8.98 37.86 3.02
8274 10409 7.801716 TTTGTGCTAGTGTTCTGAAATACTT 57.198 32.000 12.07 0.98 37.86 2.24
8332 10467 2.354261 ACCTCCAAGGGTTAGCCTTA 57.646 50.000 15.79 0.25 40.58 2.69
8334 10469 2.588925 ATACCTCCAAGGGTTAGCCT 57.411 50.000 0.00 0.00 40.58 4.58
8336 10471 6.935208 CACTAAATATACCTCCAAGGGTTAGC 59.065 42.308 0.00 0.00 40.58 3.09
8361 10496 2.159043 TCCACATAGCAGTGCTCTTAGC 60.159 50.000 23.64 0.00 40.44 3.09
8362 10497 3.452474 GTCCACATAGCAGTGCTCTTAG 58.548 50.000 23.64 12.33 40.44 2.18
8363 10498 2.159240 CGTCCACATAGCAGTGCTCTTA 60.159 50.000 23.64 4.35 40.44 2.10
8364 10499 1.404717 CGTCCACATAGCAGTGCTCTT 60.405 52.381 23.64 7.89 40.44 2.85
8365 10500 0.174389 CGTCCACATAGCAGTGCTCT 59.826 55.000 23.64 9.50 40.44 4.09
8366 10501 0.173481 TCGTCCACATAGCAGTGCTC 59.827 55.000 23.64 4.08 40.44 4.26
8367 10502 0.108615 GTCGTCCACATAGCAGTGCT 60.109 55.000 23.44 23.44 43.41 4.40
8368 10503 0.389817 TGTCGTCCACATAGCAGTGC 60.390 55.000 7.13 7.13 38.18 4.40
8369 10504 1.350193 GTGTCGTCCACATAGCAGTG 58.650 55.000 3.63 0.00 43.92 3.66
8370 10505 3.814577 GTGTCGTCCACATAGCAGT 57.185 52.632 3.63 0.00 43.92 4.40
8378 10513 2.347452 CGTCCAAATATGTGTCGTCCAC 59.653 50.000 0.00 1.77 44.78 4.02
8379 10514 2.231721 TCGTCCAAATATGTGTCGTCCA 59.768 45.455 7.33 0.00 0.00 4.02
8380 10515 2.883574 TCGTCCAAATATGTGTCGTCC 58.116 47.619 7.33 0.00 0.00 4.79
8381 10516 5.255596 CAAATCGTCCAAATATGTGTCGTC 58.744 41.667 7.33 0.00 0.00 4.20
8382 10517 4.436852 GCAAATCGTCCAAATATGTGTCGT 60.437 41.667 7.33 0.00 0.00 4.34
8383 10518 4.028383 GCAAATCGTCCAAATATGTGTCG 58.972 43.478 0.00 0.00 0.00 4.35
8384 10519 4.980590 TGCAAATCGTCCAAATATGTGTC 58.019 39.130 0.00 0.00 0.00 3.67
8385 10520 4.699735 TCTGCAAATCGTCCAAATATGTGT 59.300 37.500 0.00 0.00 0.00 3.72
8386 10521 5.030295 GTCTGCAAATCGTCCAAATATGTG 58.970 41.667 0.00 0.00 0.00 3.21
8387 10522 4.201812 CGTCTGCAAATCGTCCAAATATGT 60.202 41.667 0.00 0.00 0.00 2.29
8388 10523 4.033932 TCGTCTGCAAATCGTCCAAATATG 59.966 41.667 0.00 0.00 0.00 1.78
8389 10524 4.188462 TCGTCTGCAAATCGTCCAAATAT 58.812 39.130 0.00 0.00 0.00 1.28
8390 10525 3.591023 TCGTCTGCAAATCGTCCAAATA 58.409 40.909 0.00 0.00 0.00 1.40
8391 10526 2.422597 TCGTCTGCAAATCGTCCAAAT 58.577 42.857 0.00 0.00 0.00 2.32
8392 10527 1.872388 TCGTCTGCAAATCGTCCAAA 58.128 45.000 0.00 0.00 0.00 3.28
8393 10528 1.731709 CATCGTCTGCAAATCGTCCAA 59.268 47.619 0.00 0.00 0.00 3.53
8394 10529 1.067213 TCATCGTCTGCAAATCGTCCA 60.067 47.619 0.00 0.00 0.00 4.02
8395 10530 1.640428 TCATCGTCTGCAAATCGTCC 58.360 50.000 0.00 0.00 0.00 4.79
8396 10531 3.933155 AATCATCGTCTGCAAATCGTC 57.067 42.857 0.00 0.00 0.00 4.20
8397 10532 4.180817 TGTAATCATCGTCTGCAAATCGT 58.819 39.130 0.00 0.00 0.00 3.73
8398 10533 4.777140 TGTAATCATCGTCTGCAAATCG 57.223 40.909 0.00 0.00 0.00 3.34
8413 10548 0.531974 TTCCGCCGCTGGATGTAATC 60.532 55.000 5.04 0.00 44.55 1.75
8414 10549 0.814010 GTTCCGCCGCTGGATGTAAT 60.814 55.000 5.04 0.00 38.00 1.89
8415 10550 1.448893 GTTCCGCCGCTGGATGTAA 60.449 57.895 5.04 0.00 38.00 2.41
8416 10551 2.185867 GTTCCGCCGCTGGATGTA 59.814 61.111 5.04 0.00 38.00 2.29
8417 10552 4.778143 GGTTCCGCCGCTGGATGT 62.778 66.667 5.04 0.00 38.00 3.06
8418 10553 3.976701 AAGGTTCCGCCGCTGGATG 62.977 63.158 5.04 0.00 43.70 3.51
8419 10554 3.717294 AAGGTTCCGCCGCTGGAT 61.717 61.111 5.04 0.00 43.70 3.41
8420 10555 4.697756 CAAGGTTCCGCCGCTGGA 62.698 66.667 0.00 0.52 43.70 3.86
8422 10557 3.423154 GACAAGGTTCCGCCGCTG 61.423 66.667 0.00 0.00 43.70 5.18
8423 10558 4.699522 GGACAAGGTTCCGCCGCT 62.700 66.667 0.00 0.00 43.70 5.52
8425 10560 1.852067 CTTTGGACAAGGTTCCGCCG 61.852 60.000 0.00 0.00 43.70 6.46
8426 10561 1.956802 CTTTGGACAAGGTTCCGCC 59.043 57.895 0.00 0.00 38.69 6.13
8427 10562 1.285950 GCTTTGGACAAGGTTCCGC 59.714 57.895 0.00 0.00 38.69 5.54
8428 10563 1.852067 CGGCTTTGGACAAGGTTCCG 61.852 60.000 0.00 0.00 38.69 4.30
8429 10564 0.536460 TCGGCTTTGGACAAGGTTCC 60.536 55.000 0.00 0.00 36.03 3.62
8430 10565 1.001706 GTTCGGCTTTGGACAAGGTTC 60.002 52.381 0.00 0.00 0.00 3.62
8431 10566 1.029681 GTTCGGCTTTGGACAAGGTT 58.970 50.000 0.00 0.00 0.00 3.50
8432 10567 0.106918 TGTTCGGCTTTGGACAAGGT 60.107 50.000 0.00 0.00 0.00 3.50
8433 10568 1.028905 TTGTTCGGCTTTGGACAAGG 58.971 50.000 0.00 0.00 0.00 3.61
8434 10569 1.403679 TGTTGTTCGGCTTTGGACAAG 59.596 47.619 0.00 0.00 33.15 3.16
8435 10570 1.403679 CTGTTGTTCGGCTTTGGACAA 59.596 47.619 0.00 0.00 0.00 3.18
8436 10571 1.021202 CTGTTGTTCGGCTTTGGACA 58.979 50.000 0.00 0.00 0.00 4.02
8437 10572 0.317854 GCTGTTGTTCGGCTTTGGAC 60.318 55.000 0.00 0.00 44.39 4.02
8438 10573 1.452145 GGCTGTTGTTCGGCTTTGGA 61.452 55.000 0.00 0.00 46.74 3.53
8439 10574 1.007387 GGCTGTTGTTCGGCTTTGG 60.007 57.895 0.00 0.00 46.74 3.28
8440 10575 1.370414 CGGCTGTTGTTCGGCTTTG 60.370 57.895 0.00 0.00 46.74 2.77
8441 10576 3.030652 CGGCTGTTGTTCGGCTTT 58.969 55.556 0.00 0.00 46.74 3.51
8442 10577 3.660111 GCGGCTGTTGTTCGGCTT 61.660 61.111 0.00 0.00 46.74 4.35
8443 10578 4.626081 AGCGGCTGTTGTTCGGCT 62.626 61.111 0.00 0.00 46.74 5.52
8444 10579 4.389576 CAGCGGCTGTTGTTCGGC 62.390 66.667 21.60 0.00 46.83 5.54
8445 10580 3.726517 CCAGCGGCTGTTGTTCGG 61.727 66.667 26.79 7.54 0.00 4.30
8446 10581 1.577328 AATCCAGCGGCTGTTGTTCG 61.577 55.000 26.79 11.73 0.00 3.95
8447 10582 0.169009 GAATCCAGCGGCTGTTGTTC 59.831 55.000 26.79 21.34 0.00 3.18
8448 10583 0.250901 AGAATCCAGCGGCTGTTGTT 60.251 50.000 26.79 17.86 0.00 2.83
8449 10584 0.250901 AAGAATCCAGCGGCTGTTGT 60.251 50.000 26.79 12.49 0.00 3.32
8450 10585 0.883833 AAAGAATCCAGCGGCTGTTG 59.116 50.000 26.79 13.84 0.00 3.33
8451 10586 2.290323 ACTAAAGAATCCAGCGGCTGTT 60.290 45.455 26.79 16.41 0.00 3.16
8452 10587 1.279271 ACTAAAGAATCCAGCGGCTGT 59.721 47.619 26.79 10.25 0.00 4.40
8453 10588 1.936547 GACTAAAGAATCCAGCGGCTG 59.063 52.381 22.84 22.84 0.00 4.85
8454 10589 1.471676 CGACTAAAGAATCCAGCGGCT 60.472 52.381 0.00 0.00 0.00 5.52
8455 10590 0.931005 CGACTAAAGAATCCAGCGGC 59.069 55.000 0.00 0.00 0.00 6.53
8456 10591 1.927174 CACGACTAAAGAATCCAGCGG 59.073 52.381 0.00 0.00 0.00 5.52
8457 10592 1.324736 GCACGACTAAAGAATCCAGCG 59.675 52.381 0.00 0.00 0.00 5.18
8458 10593 2.094417 GTGCACGACTAAAGAATCCAGC 59.906 50.000 0.00 0.00 0.00 4.85
8459 10594 3.325870 TGTGCACGACTAAAGAATCCAG 58.674 45.455 13.13 0.00 0.00 3.86
8460 10595 3.394674 TGTGCACGACTAAAGAATCCA 57.605 42.857 13.13 0.00 0.00 3.41
8461 10596 4.742438 TTTGTGCACGACTAAAGAATCC 57.258 40.909 13.13 0.00 0.00 3.01
8462 10597 5.927030 TGATTTGTGCACGACTAAAGAATC 58.073 37.500 13.13 8.83 0.00 2.52
8463 10598 5.940192 TGATTTGTGCACGACTAAAGAAT 57.060 34.783 13.13 0.00 0.00 2.40
8464 10599 5.700832 AGATGATTTGTGCACGACTAAAGAA 59.299 36.000 13.13 0.00 0.00 2.52
8465 10600 5.237815 AGATGATTTGTGCACGACTAAAGA 58.762 37.500 13.13 0.00 0.00 2.52
8466 10601 5.536554 AGATGATTTGTGCACGACTAAAG 57.463 39.130 13.13 0.00 0.00 1.85
8467 10602 6.394809 TCTAGATGATTTGTGCACGACTAAA 58.605 36.000 13.13 7.45 0.00 1.85
8468 10603 5.961272 TCTAGATGATTTGTGCACGACTAA 58.039 37.500 13.13 0.00 0.00 2.24
8469 10604 5.576447 TCTAGATGATTTGTGCACGACTA 57.424 39.130 13.13 6.76 0.00 2.59
8470 10605 4.456280 TCTAGATGATTTGTGCACGACT 57.544 40.909 13.13 4.16 0.00 4.18
8471 10606 5.725110 ATTCTAGATGATTTGTGCACGAC 57.275 39.130 13.13 0.00 0.00 4.34
8472 10607 6.149308 ACAAATTCTAGATGATTTGTGCACGA 59.851 34.615 24.79 7.71 43.15 4.35
8473 10608 6.317088 ACAAATTCTAGATGATTTGTGCACG 58.683 36.000 24.79 7.51 43.15 5.34
8474 10609 6.467047 CGACAAATTCTAGATGATTTGTGCAC 59.533 38.462 28.17 17.98 44.30 4.57
8475 10610 6.149308 ACGACAAATTCTAGATGATTTGTGCA 59.851 34.615 28.17 0.00 44.30 4.57
8476 10611 6.467047 CACGACAAATTCTAGATGATTTGTGC 59.533 38.462 28.17 20.58 44.30 4.57
8477 10612 7.479603 CACACGACAAATTCTAGATGATTTGTG 59.520 37.037 28.17 22.76 44.30 3.33
8478 10613 7.173218 ACACACGACAAATTCTAGATGATTTGT 59.827 33.333 25.32 25.32 46.15 2.83
8479 10614 7.479603 CACACACGACAAATTCTAGATGATTTG 59.520 37.037 20.86 20.86 39.24 2.32
8480 10615 7.361201 CCACACACGACAAATTCTAGATGATTT 60.361 37.037 0.00 0.00 0.00 2.17
8481 10616 6.092670 CCACACACGACAAATTCTAGATGATT 59.907 38.462 0.00 0.00 0.00 2.57
8482 10617 5.582269 CCACACACGACAAATTCTAGATGAT 59.418 40.000 0.00 0.00 0.00 2.45
8483 10618 4.929211 CCACACACGACAAATTCTAGATGA 59.071 41.667 0.00 0.00 0.00 2.92
8484 10619 4.929211 TCCACACACGACAAATTCTAGATG 59.071 41.667 0.00 0.00 0.00 2.90
8485 10620 5.147330 TCCACACACGACAAATTCTAGAT 57.853 39.130 0.00 0.00 0.00 1.98
8486 10621 4.556233 CTCCACACACGACAAATTCTAGA 58.444 43.478 0.00 0.00 0.00 2.43
8487 10622 3.123621 GCTCCACACACGACAAATTCTAG 59.876 47.826 0.00 0.00 0.00 2.43
8488 10623 3.064207 GCTCCACACACGACAAATTCTA 58.936 45.455 0.00 0.00 0.00 2.10
8489 10624 1.873591 GCTCCACACACGACAAATTCT 59.126 47.619 0.00 0.00 0.00 2.40
8490 10625 1.601903 TGCTCCACACACGACAAATTC 59.398 47.619 0.00 0.00 0.00 2.17
8491 10626 1.603802 CTGCTCCACACACGACAAATT 59.396 47.619 0.00 0.00 0.00 1.82
8492 10627 1.229428 CTGCTCCACACACGACAAAT 58.771 50.000 0.00 0.00 0.00 2.32
8493 10628 0.107897 ACTGCTCCACACACGACAAA 60.108 50.000 0.00 0.00 0.00 2.83
8494 10629 0.107897 AACTGCTCCACACACGACAA 60.108 50.000 0.00 0.00 0.00 3.18
8495 10630 0.529773 GAACTGCTCCACACACGACA 60.530 55.000 0.00 0.00 0.00 4.35
8496 10631 2.226269 GAACTGCTCCACACACGAC 58.774 57.895 0.00 0.00 0.00 4.34
8497 10632 4.750460 GAACTGCTCCACACACGA 57.250 55.556 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.