Multiple sequence alignment - TraesCS5A01G453300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G453300 chr5A 100.000 3006 0 0 1 3006 634623744 634626749 0.000000e+00 5552.0
1 TraesCS5A01G453300 chr5A 94.867 2591 103 6 426 3006 573012214 573009644 0.000000e+00 4021.0
2 TraesCS5A01G453300 chr5A 96.248 773 23 2 2240 3006 552242117 552241345 0.000000e+00 1262.0
3 TraesCS5A01G453300 chr5A 89.262 149 10 1 119 267 635268299 635268441 6.620000e-42 182.0
4 TraesCS5A01G453300 chr5A 100.000 28 0 0 276 303 635268480 635268507 5.000000e-03 52.8
5 TraesCS5A01G453300 chr1A 95.853 2604 74 11 425 3006 572001397 571998806 0.000000e+00 4180.0
6 TraesCS5A01G453300 chr6A 95.724 2596 85 9 426 3005 116690038 116692623 0.000000e+00 4156.0
7 TraesCS5A01G453300 chr1D 94.672 2609 102 16 425 3006 42897257 42894659 0.000000e+00 4013.0
8 TraesCS5A01G453300 chr7D 93.868 2593 126 8 427 3003 525733739 525736314 0.000000e+00 3877.0
9 TraesCS5A01G453300 chr7A 95.979 1940 53 7 426 2349 689936403 689938333 0.000000e+00 3127.0
10 TraesCS5A01G453300 chr7A 96.779 683 22 0 2321 3003 689938334 689939016 0.000000e+00 1140.0
11 TraesCS5A01G453300 chr3A 91.417 2202 134 23 426 2620 22779068 22776915 0.000000e+00 2968.0
12 TraesCS5A01G453300 chr7B 88.688 2272 213 18 742 3001 9313995 9311756 0.000000e+00 2732.0
13 TraesCS5A01G453300 chr3D 95.715 1657 50 4 1354 3006 594954002 594952363 0.000000e+00 2647.0
14 TraesCS5A01G453300 chr2B 92.639 1834 101 10 426 2241 80552660 80550843 0.000000e+00 2608.0
15 TraesCS5A01G453300 chr2B 92.857 784 55 1 2222 3005 80549106 80548324 0.000000e+00 1136.0
16 TraesCS5A01G453300 chr6D 91.016 1792 129 10 1221 3006 45727752 45729517 0.000000e+00 2388.0
17 TraesCS5A01G453300 chr2A 95.953 1458 46 5 600 2047 773340879 773339425 0.000000e+00 2353.0
18 TraesCS5A01G453300 chr3B 90.409 1637 91 17 1392 3006 521412783 521411191 0.000000e+00 2093.0
19 TraesCS5A01G453300 chr3B 83.696 276 34 3 1950 2219 389494913 389494643 1.790000e-62 250.0
20 TraesCS5A01G453300 chr1B 92.906 1015 59 3 1992 3006 548829398 548828397 0.000000e+00 1463.0
21 TraesCS5A01G453300 chr5D 91.765 170 8 5 256 425 507558878 507559041 6.480000e-57 231.0
22 TraesCS5A01G453300 chr5D 91.667 156 13 0 115 270 507507324 507507479 1.810000e-52 217.0
23 TraesCS5A01G453300 chr5D 90.476 63 6 0 252 314 507507489 507507551 1.920000e-12 84.2
24 TraesCS5A01G453300 chr5B 79.755 326 40 11 115 418 637765102 637765423 2.350000e-51 213.0
25 TraesCS5A01G453300 chr5B 89.017 173 12 5 256 425 637498731 637498899 1.090000e-49 207.0
26 TraesCS5A01G453300 chr5B 90.000 160 8 3 108 267 637891169 637891320 1.830000e-47 200.0
27 TraesCS5A01G453300 chr5B 90.667 75 1 2 193 267 637498646 637498714 8.870000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G453300 chr5A 634623744 634626749 3005 False 5552.0 5552 100.000 1 3006 1 chr5A.!!$F1 3005
1 TraesCS5A01G453300 chr5A 573009644 573012214 2570 True 4021.0 4021 94.867 426 3006 1 chr5A.!!$R2 2580
2 TraesCS5A01G453300 chr5A 552241345 552242117 772 True 1262.0 1262 96.248 2240 3006 1 chr5A.!!$R1 766
3 TraesCS5A01G453300 chr1A 571998806 572001397 2591 True 4180.0 4180 95.853 425 3006 1 chr1A.!!$R1 2581
4 TraesCS5A01G453300 chr6A 116690038 116692623 2585 False 4156.0 4156 95.724 426 3005 1 chr6A.!!$F1 2579
5 TraesCS5A01G453300 chr1D 42894659 42897257 2598 True 4013.0 4013 94.672 425 3006 1 chr1D.!!$R1 2581
6 TraesCS5A01G453300 chr7D 525733739 525736314 2575 False 3877.0 3877 93.868 427 3003 1 chr7D.!!$F1 2576
7 TraesCS5A01G453300 chr7A 689936403 689939016 2613 False 2133.5 3127 96.379 426 3003 2 chr7A.!!$F1 2577
8 TraesCS5A01G453300 chr3A 22776915 22779068 2153 True 2968.0 2968 91.417 426 2620 1 chr3A.!!$R1 2194
9 TraesCS5A01G453300 chr7B 9311756 9313995 2239 True 2732.0 2732 88.688 742 3001 1 chr7B.!!$R1 2259
10 TraesCS5A01G453300 chr3D 594952363 594954002 1639 True 2647.0 2647 95.715 1354 3006 1 chr3D.!!$R1 1652
11 TraesCS5A01G453300 chr2B 80548324 80552660 4336 True 1872.0 2608 92.748 426 3005 2 chr2B.!!$R1 2579
12 TraesCS5A01G453300 chr6D 45727752 45729517 1765 False 2388.0 2388 91.016 1221 3006 1 chr6D.!!$F1 1785
13 TraesCS5A01G453300 chr2A 773339425 773340879 1454 True 2353.0 2353 95.953 600 2047 1 chr2A.!!$R1 1447
14 TraesCS5A01G453300 chr3B 521411191 521412783 1592 True 2093.0 2093 90.409 1392 3006 1 chr3B.!!$R2 1614
15 TraesCS5A01G453300 chr1B 548828397 548829398 1001 True 1463.0 1463 92.906 1992 3006 1 chr1B.!!$R1 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 424 0.100682 GATGAGCCGTGCGTCTAGAA 59.899 55.0 0.0 0.0 0.0 2.1 F
772 794 1.958902 CTGCTCTCCACTGCTCCTCC 61.959 65.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1572 4.040829 TGATACATATCCCAGAGCTTGGTG 59.959 45.833 12.18 7.54 46.25 4.17 R
2673 4581 0.179037 CCAGATCATCGCACCACCAT 60.179 55.000 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.985188 TTCTTGCAAATATCAGGTGTACTC 57.015 37.500 0.00 0.00 0.00 2.59
25 26 5.428253 TCTTGCAAATATCAGGTGTACTCC 58.572 41.667 5.81 5.81 0.00 3.85
26 27 4.835284 TGCAAATATCAGGTGTACTCCA 57.165 40.909 16.03 0.00 0.00 3.86
27 28 4.513442 TGCAAATATCAGGTGTACTCCAC 58.487 43.478 16.03 0.00 43.74 4.02
28 29 3.555956 GCAAATATCAGGTGTACTCCACG 59.444 47.826 16.03 6.87 45.52 4.94
29 30 4.755411 CAAATATCAGGTGTACTCCACGT 58.245 43.478 16.03 3.93 45.52 4.49
32 33 2.649034 AGGTGTACTCCACGTGCG 59.351 61.111 10.91 5.74 45.52 5.34
33 34 1.900016 AGGTGTACTCCACGTGCGA 60.900 57.895 10.91 8.28 45.52 5.10
34 35 1.443872 GGTGTACTCCACGTGCGAG 60.444 63.158 23.93 23.93 45.52 5.03
35 36 1.577922 GTGTACTCCACGTGCGAGA 59.422 57.895 29.15 14.70 33.61 4.04
36 37 0.728466 GTGTACTCCACGTGCGAGAC 60.728 60.000 29.15 23.08 33.61 3.36
37 38 1.167781 TGTACTCCACGTGCGAGACA 61.168 55.000 29.15 24.55 0.00 3.41
38 39 0.728466 GTACTCCACGTGCGAGACAC 60.728 60.000 29.15 22.90 46.45 3.67
72 73 8.996271 GGGACGTAGGGAATAATAATAAGTTTG 58.004 37.037 0.00 0.00 0.00 2.93
73 74 9.551734 GGACGTAGGGAATAATAATAAGTTTGT 57.448 33.333 0.00 0.00 0.00 2.83
87 88 7.891498 AATAAGTTTGTATTGTACCCCATCC 57.109 36.000 0.00 0.00 0.00 3.51
88 89 3.881220 AGTTTGTATTGTACCCCATCCG 58.119 45.455 0.00 0.00 0.00 4.18
89 90 3.264964 AGTTTGTATTGTACCCCATCCGT 59.735 43.478 0.00 0.00 0.00 4.69
90 91 4.470664 AGTTTGTATTGTACCCCATCCGTA 59.529 41.667 0.00 0.00 0.00 4.02
91 92 5.045724 AGTTTGTATTGTACCCCATCCGTAA 60.046 40.000 0.00 0.00 0.00 3.18
92 93 5.432680 TTGTATTGTACCCCATCCGTAAA 57.567 39.130 0.00 0.00 0.00 2.01
93 94 5.633655 TGTATTGTACCCCATCCGTAAAT 57.366 39.130 0.00 0.00 0.00 1.40
94 95 6.744175 TGTATTGTACCCCATCCGTAAATA 57.256 37.500 0.00 0.00 0.00 1.40
95 96 7.134362 TGTATTGTACCCCATCCGTAAATAA 57.866 36.000 0.00 0.00 0.00 1.40
96 97 7.571919 TGTATTGTACCCCATCCGTAAATAAA 58.428 34.615 0.00 0.00 0.00 1.40
97 98 8.219178 TGTATTGTACCCCATCCGTAAATAAAT 58.781 33.333 0.00 0.00 0.00 1.40
98 99 6.945938 TTGTACCCCATCCGTAAATAAATG 57.054 37.500 0.00 0.00 0.00 2.32
99 100 6.003859 TGTACCCCATCCGTAAATAAATGT 57.996 37.500 0.00 0.00 0.00 2.71
100 101 7.134362 TGTACCCCATCCGTAAATAAATGTA 57.866 36.000 0.00 0.00 0.00 2.29
101 102 7.218614 TGTACCCCATCCGTAAATAAATGTAG 58.781 38.462 0.00 0.00 0.00 2.74
102 103 5.627135 ACCCCATCCGTAAATAAATGTAGG 58.373 41.667 0.00 0.00 0.00 3.18
103 104 5.370289 ACCCCATCCGTAAATAAATGTAGGA 59.630 40.000 0.00 0.00 0.00 2.94
104 105 5.938125 CCCCATCCGTAAATAAATGTAGGAG 59.062 44.000 0.00 0.00 0.00 3.69
105 106 6.465321 CCCCATCCGTAAATAAATGTAGGAGT 60.465 42.308 0.00 0.00 0.00 3.85
106 107 6.426937 CCCATCCGTAAATAAATGTAGGAGTG 59.573 42.308 0.00 0.00 0.00 3.51
107 108 6.990349 CCATCCGTAAATAAATGTAGGAGTGT 59.010 38.462 0.00 0.00 0.00 3.55
108 109 7.497909 CCATCCGTAAATAAATGTAGGAGTGTT 59.502 37.037 0.00 0.00 0.00 3.32
109 110 8.889717 CATCCGTAAATAAATGTAGGAGTGTTT 58.110 33.333 0.00 0.00 0.00 2.83
111 112 9.590451 TCCGTAAATAAATGTAGGAGTGTTTAG 57.410 33.333 0.00 0.00 0.00 1.85
112 113 9.590451 CCGTAAATAAATGTAGGAGTGTTTAGA 57.410 33.333 0.00 0.00 0.00 2.10
118 119 7.617041 AAATGTAGGAGTGTTTAGATCAAGC 57.383 36.000 0.00 0.00 0.00 4.01
119 120 5.738619 TGTAGGAGTGTTTAGATCAAGCA 57.261 39.130 0.00 0.00 0.00 3.91
120 121 6.109156 TGTAGGAGTGTTTAGATCAAGCAA 57.891 37.500 0.00 0.00 0.00 3.91
121 122 6.166279 TGTAGGAGTGTTTAGATCAAGCAAG 58.834 40.000 0.00 0.00 0.00 4.01
122 123 5.234466 AGGAGTGTTTAGATCAAGCAAGT 57.766 39.130 0.00 0.00 0.00 3.16
123 124 5.241662 AGGAGTGTTTAGATCAAGCAAGTC 58.758 41.667 0.00 0.00 0.00 3.01
124 125 5.012561 AGGAGTGTTTAGATCAAGCAAGTCT 59.987 40.000 0.00 0.00 0.00 3.24
125 126 6.211584 AGGAGTGTTTAGATCAAGCAAGTCTA 59.788 38.462 0.00 0.00 0.00 2.59
126 127 7.044798 GGAGTGTTTAGATCAAGCAAGTCTAT 58.955 38.462 0.00 0.00 0.00 1.98
127 128 8.198109 GGAGTGTTTAGATCAAGCAAGTCTATA 58.802 37.037 0.00 0.00 0.00 1.31
128 129 9.757227 GAGTGTTTAGATCAAGCAAGTCTATAT 57.243 33.333 0.00 0.00 0.00 0.86
129 130 9.757227 AGTGTTTAGATCAAGCAAGTCTATATC 57.243 33.333 0.00 0.00 0.00 1.63
130 131 9.534565 GTGTTTAGATCAAGCAAGTCTATATCA 57.465 33.333 0.00 0.00 0.00 2.15
157 158 8.635877 ATTTTTACAGCATTTTACGTCAAACA 57.364 26.923 0.00 0.00 0.00 2.83
158 159 8.635877 TTTTTACAGCATTTTACGTCAAACAT 57.364 26.923 0.00 0.00 0.00 2.71
159 160 8.635877 TTTTACAGCATTTTACGTCAAACATT 57.364 26.923 0.00 0.00 0.00 2.71
160 161 8.635877 TTTACAGCATTTTACGTCAAACATTT 57.364 26.923 0.00 0.00 0.00 2.32
161 162 6.509317 ACAGCATTTTACGTCAAACATTTG 57.491 33.333 0.00 0.00 39.48 2.32
162 163 6.269315 ACAGCATTTTACGTCAAACATTTGA 58.731 32.000 2.89 2.89 44.31 2.69
176 177 8.296799 TCAAACATTTGATTTTACAGCATGTC 57.703 30.769 2.89 0.00 44.03 3.06
177 178 7.384660 TCAAACATTTGATTTTACAGCATGTCC 59.615 33.333 2.89 0.00 44.03 4.02
178 179 7.360269 CAAACATTTGATTTTACAGCATGTCCC 60.360 37.037 0.00 0.00 43.33 4.46
190 191 2.001803 ATGTCCCCACATGTCAGGG 58.998 57.895 20.48 20.48 42.05 4.45
191 192 2.044946 GTCCCCACATGTCAGGGC 60.045 66.667 21.38 11.77 44.06 5.19
192 193 3.338250 TCCCCACATGTCAGGGCC 61.338 66.667 21.38 0.00 44.06 5.80
193 194 3.660571 CCCCACATGTCAGGGCCA 61.661 66.667 15.93 0.00 44.06 5.36
194 195 2.361610 CCCACATGTCAGGGCCAC 60.362 66.667 6.18 0.00 38.44 5.01
195 196 2.747460 CCACATGTCAGGGCCACG 60.747 66.667 6.18 0.00 0.00 4.94
196 197 2.032528 CACATGTCAGGGCCACGT 59.967 61.111 6.18 0.00 0.00 4.49
197 198 2.032528 ACATGTCAGGGCCACGTG 59.967 61.111 9.08 9.08 36.90 4.49
198 199 2.747460 CATGTCAGGGCCACGTGG 60.747 66.667 30.66 30.66 38.53 4.94
208 209 2.631428 CCACGTGGCGTTGACTTG 59.369 61.111 24.02 0.00 38.32 3.16
209 210 1.885388 CCACGTGGCGTTGACTTGA 60.885 57.895 24.02 0.00 38.32 3.02
210 211 1.564622 CACGTGGCGTTGACTTGAG 59.435 57.895 7.95 0.00 38.32 3.02
211 212 2.244651 ACGTGGCGTTGACTTGAGC 61.245 57.895 0.00 0.00 36.35 4.26
212 213 2.243957 CGTGGCGTTGACTTGAGCA 61.244 57.895 0.00 0.00 0.00 4.26
213 214 1.568612 CGTGGCGTTGACTTGAGCAT 61.569 55.000 0.00 0.00 0.00 3.79
214 215 1.438651 GTGGCGTTGACTTGAGCATA 58.561 50.000 0.00 0.00 0.00 3.14
215 216 2.009774 GTGGCGTTGACTTGAGCATAT 58.990 47.619 0.00 0.00 0.00 1.78
216 217 3.194861 GTGGCGTTGACTTGAGCATATA 58.805 45.455 0.00 0.00 0.00 0.86
217 218 3.001330 GTGGCGTTGACTTGAGCATATAC 59.999 47.826 0.00 0.00 0.00 1.47
218 219 3.194861 GGCGTTGACTTGAGCATATACA 58.805 45.455 0.00 0.00 0.00 2.29
219 220 3.809832 GGCGTTGACTTGAGCATATACAT 59.190 43.478 0.00 0.00 0.00 2.29
220 221 4.273480 GGCGTTGACTTGAGCATATACATT 59.727 41.667 0.00 0.00 0.00 2.71
221 222 5.220854 GGCGTTGACTTGAGCATATACATTT 60.221 40.000 0.00 0.00 0.00 2.32
222 223 6.258160 GCGTTGACTTGAGCATATACATTTT 58.742 36.000 0.00 0.00 0.00 1.82
223 224 7.406553 GCGTTGACTTGAGCATATACATTTTA 58.593 34.615 0.00 0.00 0.00 1.52
224 225 7.584123 GCGTTGACTTGAGCATATACATTTTAG 59.416 37.037 0.00 0.00 0.00 1.85
225 226 8.817100 CGTTGACTTGAGCATATACATTTTAGA 58.183 33.333 0.00 0.00 0.00 2.10
226 227 9.922305 GTTGACTTGAGCATATACATTTTAGAC 57.078 33.333 0.00 0.00 0.00 2.59
227 228 9.665719 TTGACTTGAGCATATACATTTTAGACA 57.334 29.630 0.00 0.00 0.00 3.41
228 229 9.665719 TGACTTGAGCATATACATTTTAGACAA 57.334 29.630 0.00 0.00 0.00 3.18
230 231 9.890629 ACTTGAGCATATACATTTTAGACAAGA 57.109 29.630 0.00 0.00 35.42 3.02
241 242 8.567285 ACATTTTAGACAAGAATGAGGGTAAG 57.433 34.615 2.66 0.00 35.36 2.34
242 243 8.383175 ACATTTTAGACAAGAATGAGGGTAAGA 58.617 33.333 2.66 0.00 35.36 2.10
243 244 9.231297 CATTTTAGACAAGAATGAGGGTAAGAA 57.769 33.333 0.00 0.00 33.67 2.52
244 245 8.617290 TTTTAGACAAGAATGAGGGTAAGAAC 57.383 34.615 0.00 0.00 0.00 3.01
245 246 5.825593 AGACAAGAATGAGGGTAAGAACA 57.174 39.130 0.00 0.00 0.00 3.18
246 247 6.187727 AGACAAGAATGAGGGTAAGAACAA 57.812 37.500 0.00 0.00 0.00 2.83
247 248 6.234177 AGACAAGAATGAGGGTAAGAACAAG 58.766 40.000 0.00 0.00 0.00 3.16
248 249 5.941788 ACAAGAATGAGGGTAAGAACAAGT 58.058 37.500 0.00 0.00 0.00 3.16
249 250 6.365520 ACAAGAATGAGGGTAAGAACAAGTT 58.634 36.000 0.00 0.00 0.00 2.66
250 251 6.833933 ACAAGAATGAGGGTAAGAACAAGTTT 59.166 34.615 0.00 0.00 0.00 2.66
251 252 6.884280 AGAATGAGGGTAAGAACAAGTTTG 57.116 37.500 0.00 0.00 0.00 2.93
252 253 5.770162 AGAATGAGGGTAAGAACAAGTTTGG 59.230 40.000 0.00 0.00 0.00 3.28
253 254 3.219281 TGAGGGTAAGAACAAGTTTGGC 58.781 45.455 0.00 0.00 0.00 4.52
254 255 2.225727 GAGGGTAAGAACAAGTTTGGCG 59.774 50.000 0.00 0.00 0.00 5.69
255 256 1.951602 GGGTAAGAACAAGTTTGGCGT 59.048 47.619 0.00 0.00 0.00 5.68
256 257 2.359848 GGGTAAGAACAAGTTTGGCGTT 59.640 45.455 0.00 0.00 0.00 4.84
257 258 3.181484 GGGTAAGAACAAGTTTGGCGTTT 60.181 43.478 0.00 0.00 0.00 3.60
258 259 3.794564 GGTAAGAACAAGTTTGGCGTTTG 59.205 43.478 0.00 0.00 0.00 2.93
259 260 2.577449 AGAACAAGTTTGGCGTTTGG 57.423 45.000 0.00 0.00 0.00 3.28
260 261 2.096248 AGAACAAGTTTGGCGTTTGGA 58.904 42.857 0.00 0.00 0.00 3.53
261 262 2.159296 AGAACAAGTTTGGCGTTTGGAC 60.159 45.455 0.00 0.00 0.00 4.02
262 263 1.470051 ACAAGTTTGGCGTTTGGACT 58.530 45.000 0.00 0.00 0.00 3.85
263 264 1.822371 ACAAGTTTGGCGTTTGGACTT 59.178 42.857 0.00 0.00 0.00 3.01
264 265 2.192624 CAAGTTTGGCGTTTGGACTTG 58.807 47.619 0.00 0.00 40.58 3.16
265 266 1.757682 AGTTTGGCGTTTGGACTTGA 58.242 45.000 0.00 0.00 0.00 3.02
266 267 1.676006 AGTTTGGCGTTTGGACTTGAG 59.324 47.619 0.00 0.00 0.00 3.02
267 268 1.673920 GTTTGGCGTTTGGACTTGAGA 59.326 47.619 0.00 0.00 0.00 3.27
268 269 2.270352 TTGGCGTTTGGACTTGAGAT 57.730 45.000 0.00 0.00 0.00 2.75
269 270 2.270352 TGGCGTTTGGACTTGAGATT 57.730 45.000 0.00 0.00 0.00 2.40
270 271 3.410631 TGGCGTTTGGACTTGAGATTA 57.589 42.857 0.00 0.00 0.00 1.75
271 272 3.950397 TGGCGTTTGGACTTGAGATTAT 58.050 40.909 0.00 0.00 0.00 1.28
272 273 3.689161 TGGCGTTTGGACTTGAGATTATG 59.311 43.478 0.00 0.00 0.00 1.90
273 274 3.938963 GGCGTTTGGACTTGAGATTATGA 59.061 43.478 0.00 0.00 0.00 2.15
274 275 4.034510 GGCGTTTGGACTTGAGATTATGAG 59.965 45.833 0.00 0.00 0.00 2.90
275 276 4.870426 GCGTTTGGACTTGAGATTATGAGA 59.130 41.667 0.00 0.00 0.00 3.27
276 277 5.351465 GCGTTTGGACTTGAGATTATGAGAA 59.649 40.000 0.00 0.00 0.00 2.87
277 278 6.673316 GCGTTTGGACTTGAGATTATGAGAAC 60.673 42.308 0.00 0.00 0.00 3.01
278 279 6.368791 CGTTTGGACTTGAGATTATGAGAACA 59.631 38.462 0.00 0.00 0.00 3.18
279 280 7.095229 CGTTTGGACTTGAGATTATGAGAACAA 60.095 37.037 0.00 0.00 0.00 2.83
280 281 8.567948 GTTTGGACTTGAGATTATGAGAACAAA 58.432 33.333 0.00 0.00 0.00 2.83
281 282 8.690203 TTGGACTTGAGATTATGAGAACAAAA 57.310 30.769 0.00 0.00 0.00 2.44
282 283 8.868522 TGGACTTGAGATTATGAGAACAAAAT 57.131 30.769 0.00 0.00 0.00 1.82
283 284 9.300681 TGGACTTGAGATTATGAGAACAAAATT 57.699 29.630 0.00 0.00 0.00 1.82
284 285 9.565213 GGACTTGAGATTATGAGAACAAAATTG 57.435 33.333 0.00 0.00 0.00 2.32
285 286 8.976986 ACTTGAGATTATGAGAACAAAATTGC 57.023 30.769 0.00 0.00 0.00 3.56
286 287 8.579006 ACTTGAGATTATGAGAACAAAATTGCA 58.421 29.630 0.00 0.00 0.00 4.08
287 288 9.582431 CTTGAGATTATGAGAACAAAATTGCAT 57.418 29.630 0.00 0.00 0.00 3.96
288 289 9.932207 TTGAGATTATGAGAACAAAATTGCATT 57.068 25.926 0.00 0.00 0.00 3.56
321 322 9.671279 TCAGAGTAGCAAAAATTCATATTCAGA 57.329 29.630 0.00 0.00 0.00 3.27
324 325 9.890352 GAGTAGCAAAAATTCATATTCAGATCC 57.110 33.333 0.00 0.00 0.00 3.36
325 326 8.562892 AGTAGCAAAAATTCATATTCAGATCCG 58.437 33.333 0.00 0.00 0.00 4.18
326 327 7.338800 AGCAAAAATTCATATTCAGATCCGT 57.661 32.000 0.00 0.00 0.00 4.69
327 328 7.198390 AGCAAAAATTCATATTCAGATCCGTG 58.802 34.615 0.00 0.00 0.00 4.94
328 329 7.067372 AGCAAAAATTCATATTCAGATCCGTGA 59.933 33.333 0.00 0.00 0.00 4.35
329 330 7.701924 GCAAAAATTCATATTCAGATCCGTGAA 59.298 33.333 0.34 0.34 40.68 3.18
330 331 9.013490 CAAAAATTCATATTCAGATCCGTGAAC 57.987 33.333 0.00 0.00 39.25 3.18
331 332 6.530913 AATTCATATTCAGATCCGTGAACG 57.469 37.500 0.00 0.00 39.25 3.95
332 333 4.911514 TCATATTCAGATCCGTGAACGA 57.088 40.909 4.03 0.00 39.25 3.85
333 334 4.607955 TCATATTCAGATCCGTGAACGAC 58.392 43.478 4.03 0.00 39.25 4.34
334 335 4.338400 TCATATTCAGATCCGTGAACGACT 59.662 41.667 4.03 0.00 39.25 4.18
335 336 2.631418 TTCAGATCCGTGAACGACTC 57.369 50.000 4.03 0.79 43.02 3.36
336 337 1.530323 TCAGATCCGTGAACGACTCA 58.470 50.000 4.03 0.00 43.02 3.41
337 338 2.092323 TCAGATCCGTGAACGACTCAT 58.908 47.619 4.03 0.00 43.02 2.90
338 339 2.492088 TCAGATCCGTGAACGACTCATT 59.508 45.455 4.03 0.00 43.02 2.57
339 340 2.600420 CAGATCCGTGAACGACTCATTG 59.400 50.000 4.03 0.00 43.02 2.82
340 341 2.231478 AGATCCGTGAACGACTCATTGT 59.769 45.455 4.03 0.00 43.02 2.71
341 342 2.519377 TCCGTGAACGACTCATTGTT 57.481 45.000 4.03 0.00 43.02 2.83
342 343 2.400399 TCCGTGAACGACTCATTGTTC 58.600 47.619 4.03 1.16 46.01 3.18
343 344 2.035449 TCCGTGAACGACTCATTGTTCT 59.965 45.455 4.03 0.00 45.99 3.01
344 345 2.800544 CCGTGAACGACTCATTGTTCTT 59.199 45.455 4.03 0.00 45.99 2.52
345 346 3.362986 CCGTGAACGACTCATTGTTCTTG 60.363 47.826 4.03 2.24 45.99 3.02
346 347 3.362986 CGTGAACGACTCATTGTTCTTGG 60.363 47.826 0.00 0.00 45.99 3.61
347 348 3.560068 GTGAACGACTCATTGTTCTTGGT 59.440 43.478 8.49 0.00 45.99 3.67
348 349 3.559655 TGAACGACTCATTGTTCTTGGTG 59.440 43.478 8.49 0.00 45.99 4.17
349 350 3.194005 ACGACTCATTGTTCTTGGTGT 57.806 42.857 0.00 0.00 0.00 4.16
350 351 3.131396 ACGACTCATTGTTCTTGGTGTC 58.869 45.455 0.00 0.00 0.00 3.67
351 352 2.480419 CGACTCATTGTTCTTGGTGTCC 59.520 50.000 0.00 0.00 0.00 4.02
352 353 3.744660 GACTCATTGTTCTTGGTGTCCT 58.255 45.455 0.00 0.00 0.00 3.85
353 354 3.480470 ACTCATTGTTCTTGGTGTCCTG 58.520 45.455 0.00 0.00 0.00 3.86
354 355 3.117888 ACTCATTGTTCTTGGTGTCCTGT 60.118 43.478 0.00 0.00 0.00 4.00
355 356 3.476552 TCATTGTTCTTGGTGTCCTGTC 58.523 45.455 0.00 0.00 0.00 3.51
356 357 2.341846 TTGTTCTTGGTGTCCTGTCC 57.658 50.000 0.00 0.00 0.00 4.02
357 358 1.507140 TGTTCTTGGTGTCCTGTCCT 58.493 50.000 0.00 0.00 0.00 3.85
358 359 1.843851 TGTTCTTGGTGTCCTGTCCTT 59.156 47.619 0.00 0.00 0.00 3.36
359 360 2.241176 TGTTCTTGGTGTCCTGTCCTTT 59.759 45.455 0.00 0.00 0.00 3.11
360 361 2.618709 GTTCTTGGTGTCCTGTCCTTTG 59.381 50.000 0.00 0.00 0.00 2.77
361 362 2.123589 TCTTGGTGTCCTGTCCTTTGA 58.876 47.619 0.00 0.00 0.00 2.69
362 363 2.507886 TCTTGGTGTCCTGTCCTTTGAA 59.492 45.455 0.00 0.00 0.00 2.69
363 364 2.638480 TGGTGTCCTGTCCTTTGAAG 57.362 50.000 0.00 0.00 0.00 3.02
364 365 1.239347 GGTGTCCTGTCCTTTGAAGC 58.761 55.000 0.00 0.00 0.00 3.86
365 366 0.868406 GTGTCCTGTCCTTTGAAGCG 59.132 55.000 0.00 0.00 0.00 4.68
366 367 0.756294 TGTCCTGTCCTTTGAAGCGA 59.244 50.000 0.00 0.00 0.00 4.93
367 368 1.347707 TGTCCTGTCCTTTGAAGCGAT 59.652 47.619 0.00 0.00 0.00 4.58
368 369 1.734465 GTCCTGTCCTTTGAAGCGATG 59.266 52.381 0.00 0.00 0.00 3.84
369 370 0.449388 CCTGTCCTTTGAAGCGATGC 59.551 55.000 0.00 0.00 0.00 3.91
370 371 1.446907 CTGTCCTTTGAAGCGATGCT 58.553 50.000 0.00 0.00 42.56 3.79
371 372 1.129998 CTGTCCTTTGAAGCGATGCTG 59.870 52.381 0.00 0.00 39.62 4.41
372 373 0.179179 GTCCTTTGAAGCGATGCTGC 60.179 55.000 0.00 0.00 39.62 5.25
374 375 0.179171 CCTTTGAAGCGATGCTGCTG 60.179 55.000 0.00 0.00 46.60 4.41
375 376 0.797249 CTTTGAAGCGATGCTGCTGC 60.797 55.000 8.89 8.89 46.60 5.25
376 377 1.239296 TTTGAAGCGATGCTGCTGCT 61.239 50.000 17.00 4.97 46.60 4.24
377 378 1.918868 TTGAAGCGATGCTGCTGCTG 61.919 55.000 17.00 0.77 46.60 4.41
378 379 3.736482 GAAGCGATGCTGCTGCTGC 62.736 63.158 22.51 22.51 46.60 5.25
387 388 2.346365 TGCTGCTGCAGACCAGAG 59.654 61.111 32.30 6.12 45.31 3.35
388 389 2.346739 GCTGCTGCAGACCAGAGT 59.653 61.111 32.30 0.00 44.64 3.24
389 390 1.741032 GCTGCTGCAGACCAGAGTC 60.741 63.158 32.30 8.77 44.64 3.36
397 398 3.559024 GACCAGAGTCGTCGTCGA 58.441 61.111 0.00 0.00 44.12 4.20
405 406 4.190350 TCGTCGTCGAATCTCCGA 57.810 55.556 1.37 0.00 43.34 4.55
406 407 2.686602 TCGTCGTCGAATCTCCGAT 58.313 52.632 1.37 0.00 43.34 4.18
407 408 0.303796 TCGTCGTCGAATCTCCGATG 59.696 55.000 1.37 7.95 43.34 3.84
410 411 0.308068 TCGTCGAATCTCCGATGAGC 59.692 55.000 0.00 0.00 46.00 4.26
411 412 0.661780 CGTCGAATCTCCGATGAGCC 60.662 60.000 0.00 0.00 45.52 4.70
412 413 0.661780 GTCGAATCTCCGATGAGCCG 60.662 60.000 0.00 0.00 40.91 5.52
413 414 1.101635 TCGAATCTCCGATGAGCCGT 61.102 55.000 0.00 0.00 38.58 5.68
414 415 0.936764 CGAATCTCCGATGAGCCGTG 60.937 60.000 0.00 0.00 38.58 4.94
415 416 1.218230 GAATCTCCGATGAGCCGTGC 61.218 60.000 0.00 0.00 38.58 5.34
416 417 2.960957 AATCTCCGATGAGCCGTGCG 62.961 60.000 0.00 0.00 38.58 5.34
417 418 4.498520 CTCCGATGAGCCGTGCGT 62.499 66.667 0.00 0.00 0.00 5.24
418 419 4.492160 TCCGATGAGCCGTGCGTC 62.492 66.667 0.00 0.00 0.00 5.19
419 420 4.498520 CCGATGAGCCGTGCGTCT 62.499 66.667 0.00 0.00 0.00 4.18
420 421 2.407616 CGATGAGCCGTGCGTCTA 59.592 61.111 0.00 0.00 0.00 2.59
421 422 1.655654 CGATGAGCCGTGCGTCTAG 60.656 63.158 0.00 0.00 0.00 2.43
422 423 1.728069 GATGAGCCGTGCGTCTAGA 59.272 57.895 0.00 0.00 0.00 2.43
423 424 0.100682 GATGAGCCGTGCGTCTAGAA 59.899 55.000 0.00 0.00 0.00 2.10
772 794 1.958902 CTGCTCTCCACTGCTCCTCC 61.959 65.000 0.00 0.00 0.00 4.30
1232 1275 4.219070 TGCTTTTCTGAATAATGCTGCTGT 59.781 37.500 0.00 0.00 0.00 4.40
1499 1549 3.755467 GGGTAGATGCCCCTTGGT 58.245 61.111 0.00 0.00 42.89 3.67
1917 1974 6.468543 TCCTTAAAGAAGAGAAGAAGAAGCC 58.531 40.000 0.00 0.00 34.25 4.35
2041 2098 4.385310 GGTTGGTAAGTGAATATGAGGCCT 60.385 45.833 3.86 3.86 0.00 5.19
2042 2099 5.163237 GGTTGGTAAGTGAATATGAGGCCTA 60.163 44.000 4.42 0.00 0.00 3.93
2043 2100 6.465894 GGTTGGTAAGTGAATATGAGGCCTAT 60.466 42.308 4.42 2.27 0.00 2.57
2044 2101 7.256547 GGTTGGTAAGTGAATATGAGGCCTATA 60.257 40.741 4.42 4.75 0.00 1.31
2045 2102 8.322091 GTTGGTAAGTGAATATGAGGCCTATAT 58.678 37.037 4.42 6.19 0.00 0.86
2046 2103 9.555411 TTGGTAAGTGAATATGAGGCCTATATA 57.445 33.333 4.42 8.59 0.00 0.86
2172 2233 0.178978 TGTTGGGTGCTGTAATGCCA 60.179 50.000 0.00 0.00 0.00 4.92
2188 2249 4.694760 ATGCCACTGATCTGTAATGCTA 57.305 40.909 4.78 1.78 0.00 3.49
2296 4115 8.996271 GGTAGTTGTTGCTAATACTTACACTTT 58.004 33.333 0.00 0.00 0.00 2.66
2623 4525 4.843516 ACCTCCTGTTCTTCTTCATCTTCT 59.156 41.667 0.00 0.00 0.00 2.85
2624 4526 5.046663 ACCTCCTGTTCTTCTTCATCTTCTC 60.047 44.000 0.00 0.00 0.00 2.87
2968 4876 1.340248 CTGGTGTACCTTGTGACGACT 59.660 52.381 2.32 0.00 36.82 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.374333 GGAGTACACCTGATATTTGCAAGAAA 59.626 38.462 0.00 0.00 0.00 2.52
1 2 5.880332 GGAGTACACCTGATATTTGCAAGAA 59.120 40.000 0.00 0.00 0.00 2.52
2 3 5.045942 TGGAGTACACCTGATATTTGCAAGA 60.046 40.000 10.86 0.00 0.00 3.02
3 4 5.065218 GTGGAGTACACCTGATATTTGCAAG 59.935 44.000 10.86 0.00 44.49 4.01
4 5 4.941263 GTGGAGTACACCTGATATTTGCAA 59.059 41.667 10.86 0.00 44.49 4.08
5 6 4.513442 GTGGAGTACACCTGATATTTGCA 58.487 43.478 10.86 0.00 44.49 4.08
17 18 0.728466 GTCTCGCACGTGGAGTACAC 60.728 60.000 24.21 15.98 46.78 2.90
18 19 1.167781 TGTCTCGCACGTGGAGTACA 61.168 55.000 24.21 22.41 33.26 2.90
19 20 0.728466 GTGTCTCGCACGTGGAGTAC 60.728 60.000 24.21 20.79 38.45 2.73
20 21 1.577922 GTGTCTCGCACGTGGAGTA 59.422 57.895 24.21 16.06 38.45 2.59
21 22 2.335369 GTGTCTCGCACGTGGAGT 59.665 61.111 24.21 0.00 38.45 3.85
28 29 0.160182 CCGTTTTACGTGTCTCGCAC 59.840 55.000 0.00 0.00 44.19 5.34
29 30 0.940519 CCCGTTTTACGTGTCTCGCA 60.941 55.000 0.00 0.00 44.19 5.10
30 31 0.664166 TCCCGTTTTACGTGTCTCGC 60.664 55.000 0.00 0.00 44.19 5.03
31 32 1.055338 GTCCCGTTTTACGTGTCTCG 58.945 55.000 0.00 0.00 40.58 4.04
32 33 1.055338 CGTCCCGTTTTACGTGTCTC 58.945 55.000 0.00 0.00 40.58 3.36
33 34 3.184094 CGTCCCGTTTTACGTGTCT 57.816 52.632 0.00 0.00 40.58 3.41
38 39 0.525761 TCCCTACGTCCCGTTTTACG 59.474 55.000 0.00 0.00 41.54 3.18
39 40 2.741759 TTCCCTACGTCCCGTTTTAC 57.258 50.000 0.00 0.00 41.54 2.01
40 41 5.612725 ATTATTCCCTACGTCCCGTTTTA 57.387 39.130 0.00 0.00 41.54 1.52
41 42 3.979101 TTATTCCCTACGTCCCGTTTT 57.021 42.857 0.00 0.00 41.54 2.43
42 43 5.612725 TTATTATTCCCTACGTCCCGTTT 57.387 39.130 0.00 0.00 41.54 3.60
43 44 5.813513 ATTATTATTCCCTACGTCCCGTT 57.186 39.130 0.00 0.00 41.54 4.44
44 45 6.494835 ACTTATTATTATTCCCTACGTCCCGT 59.505 38.462 0.00 0.00 44.35 5.28
45 46 6.928520 ACTTATTATTATTCCCTACGTCCCG 58.071 40.000 0.00 0.00 0.00 5.14
46 47 8.996271 CAAACTTATTATTATTCCCTACGTCCC 58.004 37.037 0.00 0.00 0.00 4.46
47 48 9.551734 ACAAACTTATTATTATTCCCTACGTCC 57.448 33.333 0.00 0.00 0.00 4.79
61 62 9.582648 GGATGGGGTACAATACAAACTTATTAT 57.417 33.333 0.00 0.00 0.00 1.28
62 63 7.716123 CGGATGGGGTACAATACAAACTTATTA 59.284 37.037 0.00 0.00 0.00 0.98
63 64 6.544564 CGGATGGGGTACAATACAAACTTATT 59.455 38.462 0.00 0.00 0.00 1.40
64 65 6.059484 CGGATGGGGTACAATACAAACTTAT 58.941 40.000 0.00 0.00 0.00 1.73
65 66 5.045724 ACGGATGGGGTACAATACAAACTTA 60.046 40.000 0.00 0.00 0.00 2.24
66 67 4.263594 ACGGATGGGGTACAATACAAACTT 60.264 41.667 0.00 0.00 0.00 2.66
67 68 3.264964 ACGGATGGGGTACAATACAAACT 59.735 43.478 0.00 0.00 0.00 2.66
68 69 3.613030 ACGGATGGGGTACAATACAAAC 58.387 45.455 0.00 0.00 0.00 2.93
69 70 5.432680 TTACGGATGGGGTACAATACAAA 57.567 39.130 0.00 0.00 0.00 2.83
70 71 5.432680 TTTACGGATGGGGTACAATACAA 57.567 39.130 0.00 0.00 0.00 2.41
71 72 5.633655 ATTTACGGATGGGGTACAATACA 57.366 39.130 0.00 0.00 0.00 2.29
72 73 8.508875 CATTTATTTACGGATGGGGTACAATAC 58.491 37.037 0.00 0.00 0.00 1.89
73 74 8.219178 ACATTTATTTACGGATGGGGTACAATA 58.781 33.333 0.00 0.00 0.00 1.90
74 75 7.064229 ACATTTATTTACGGATGGGGTACAAT 58.936 34.615 0.00 0.00 0.00 2.71
75 76 6.424883 ACATTTATTTACGGATGGGGTACAA 58.575 36.000 0.00 0.00 0.00 2.41
76 77 6.003859 ACATTTATTTACGGATGGGGTACA 57.996 37.500 0.00 0.00 0.00 2.90
77 78 6.652062 CCTACATTTATTTACGGATGGGGTAC 59.348 42.308 0.00 0.00 0.00 3.34
78 79 6.558014 TCCTACATTTATTTACGGATGGGGTA 59.442 38.462 0.00 0.00 0.00 3.69
79 80 5.370289 TCCTACATTTATTTACGGATGGGGT 59.630 40.000 0.00 0.00 0.00 4.95
80 81 5.871834 TCCTACATTTATTTACGGATGGGG 58.128 41.667 0.00 0.00 0.00 4.96
81 82 6.426937 CACTCCTACATTTATTTACGGATGGG 59.573 42.308 0.00 0.00 0.00 4.00
82 83 6.990349 ACACTCCTACATTTATTTACGGATGG 59.010 38.462 0.00 0.00 0.00 3.51
83 84 8.433421 AACACTCCTACATTTATTTACGGATG 57.567 34.615 0.00 0.00 0.00 3.51
85 86 9.590451 CTAAACACTCCTACATTTATTTACGGA 57.410 33.333 0.00 0.00 0.00 4.69
86 87 9.590451 TCTAAACACTCCTACATTTATTTACGG 57.410 33.333 0.00 0.00 0.00 4.02
92 93 9.331282 GCTTGATCTAAACACTCCTACATTTAT 57.669 33.333 0.00 0.00 0.00 1.40
93 94 8.318412 TGCTTGATCTAAACACTCCTACATTTA 58.682 33.333 0.00 0.00 0.00 1.40
94 95 7.168219 TGCTTGATCTAAACACTCCTACATTT 58.832 34.615 0.00 0.00 0.00 2.32
95 96 6.711277 TGCTTGATCTAAACACTCCTACATT 58.289 36.000 0.00 0.00 0.00 2.71
96 97 6.299805 TGCTTGATCTAAACACTCCTACAT 57.700 37.500 0.00 0.00 0.00 2.29
97 98 5.738619 TGCTTGATCTAAACACTCCTACA 57.261 39.130 0.00 0.00 0.00 2.74
98 99 6.166982 ACTTGCTTGATCTAAACACTCCTAC 58.833 40.000 0.00 0.00 0.00 3.18
99 100 6.211584 AGACTTGCTTGATCTAAACACTCCTA 59.788 38.462 0.00 0.00 0.00 2.94
100 101 5.012561 AGACTTGCTTGATCTAAACACTCCT 59.987 40.000 0.00 0.00 0.00 3.69
101 102 5.241662 AGACTTGCTTGATCTAAACACTCC 58.758 41.667 0.00 0.00 0.00 3.85
102 103 9.757227 ATATAGACTTGCTTGATCTAAACACTC 57.243 33.333 0.00 0.00 0.00 3.51
103 104 9.757227 GATATAGACTTGCTTGATCTAAACACT 57.243 33.333 0.00 0.00 0.00 3.55
104 105 9.534565 TGATATAGACTTGCTTGATCTAAACAC 57.465 33.333 0.00 0.00 0.00 3.32
131 132 9.731819 TGTTTGACGTAAAATGCTGTAAAAATA 57.268 25.926 0.33 0.00 0.00 1.40
132 133 8.635877 TGTTTGACGTAAAATGCTGTAAAAAT 57.364 26.923 0.33 0.00 0.00 1.82
133 134 8.635877 ATGTTTGACGTAAAATGCTGTAAAAA 57.364 26.923 0.33 0.00 0.00 1.94
134 135 8.635877 AATGTTTGACGTAAAATGCTGTAAAA 57.364 26.923 0.33 0.00 0.00 1.52
135 136 8.535592 CAAATGTTTGACGTAAAATGCTGTAAA 58.464 29.630 0.33 0.00 40.55 2.01
136 137 7.915923 TCAAATGTTTGACGTAAAATGCTGTAA 59.084 29.630 0.33 0.00 41.88 2.41
137 138 7.418408 TCAAATGTTTGACGTAAAATGCTGTA 58.582 30.769 0.33 0.00 41.88 2.74
138 139 6.269315 TCAAATGTTTGACGTAAAATGCTGT 58.731 32.000 0.33 0.00 41.88 4.40
139 140 6.746104 TCAAATGTTTGACGTAAAATGCTG 57.254 33.333 0.33 0.00 41.88 4.41
152 153 7.360269 GGGACATGCTGTAAAATCAAATGTTTG 60.360 37.037 0.00 0.00 39.48 2.93
153 154 6.650390 GGGACATGCTGTAAAATCAAATGTTT 59.350 34.615 0.00 0.00 30.25 2.83
154 155 6.165577 GGGACATGCTGTAAAATCAAATGTT 58.834 36.000 0.00 0.00 30.25 2.71
155 156 5.337491 GGGGACATGCTGTAAAATCAAATGT 60.337 40.000 0.00 0.00 31.69 2.71
156 157 5.111293 GGGGACATGCTGTAAAATCAAATG 58.889 41.667 0.00 0.00 0.00 2.32
157 158 4.776837 TGGGGACATGCTGTAAAATCAAAT 59.223 37.500 0.00 0.00 33.40 2.32
158 159 4.021544 GTGGGGACATGCTGTAAAATCAAA 60.022 41.667 0.00 0.00 46.14 2.69
159 160 3.509575 GTGGGGACATGCTGTAAAATCAA 59.490 43.478 0.00 0.00 46.14 2.57
160 161 3.088532 GTGGGGACATGCTGTAAAATCA 58.911 45.455 0.00 0.00 46.14 2.57
161 162 3.088532 TGTGGGGACATGCTGTAAAATC 58.911 45.455 0.00 0.00 46.14 2.17
162 163 3.168035 TGTGGGGACATGCTGTAAAAT 57.832 42.857 0.00 0.00 46.14 1.82
163 164 2.666272 TGTGGGGACATGCTGTAAAA 57.334 45.000 0.00 0.00 46.14 1.52
164 165 2.445427 CATGTGGGGACATGCTGTAAA 58.555 47.619 2.41 0.00 46.14 2.01
165 166 2.127271 CATGTGGGGACATGCTGTAA 57.873 50.000 2.41 0.00 46.14 2.41
166 167 3.880040 CATGTGGGGACATGCTGTA 57.120 52.632 2.41 0.00 46.14 2.74
167 168 4.749323 CATGTGGGGACATGCTGT 57.251 55.556 2.41 0.00 46.14 4.40
172 173 2.001803 CCCTGACATGTGGGGACAT 58.998 57.895 22.49 0.00 46.14 3.06
173 174 2.905996 GCCCTGACATGTGGGGACA 61.906 63.158 28.14 10.15 43.53 4.02
174 175 2.044946 GCCCTGACATGTGGGGAC 60.045 66.667 28.14 18.59 43.53 4.46
175 176 3.338250 GGCCCTGACATGTGGGGA 61.338 66.667 28.14 1.37 43.53 4.81
176 177 3.660571 TGGCCCTGACATGTGGGG 61.661 66.667 22.58 22.58 43.53 4.96
177 178 2.361610 GTGGCCCTGACATGTGGG 60.362 66.667 15.52 15.52 46.00 4.61
178 179 2.747460 CGTGGCCCTGACATGTGG 60.747 66.667 1.15 0.00 0.00 4.17
179 180 2.032528 ACGTGGCCCTGACATGTG 59.967 61.111 1.15 0.00 39.59 3.21
180 181 2.032528 CACGTGGCCCTGACATGT 59.967 61.111 7.95 0.00 42.11 3.21
181 182 2.747460 CCACGTGGCCCTGACATG 60.747 66.667 24.02 0.00 33.07 3.21
191 192 1.831389 CTCAAGTCAACGCCACGTGG 61.831 60.000 30.66 30.66 39.99 4.94
192 193 1.564622 CTCAAGTCAACGCCACGTG 59.435 57.895 9.08 9.08 39.99 4.49
193 194 2.244651 GCTCAAGTCAACGCCACGT 61.245 57.895 0.00 0.00 43.97 4.49
194 195 1.568612 ATGCTCAAGTCAACGCCACG 61.569 55.000 0.00 0.00 0.00 4.94
195 196 1.438651 TATGCTCAAGTCAACGCCAC 58.561 50.000 0.00 0.00 0.00 5.01
196 197 2.401583 ATATGCTCAAGTCAACGCCA 57.598 45.000 0.00 0.00 0.00 5.69
197 198 3.194861 TGTATATGCTCAAGTCAACGCC 58.805 45.455 0.00 0.00 0.00 5.68
198 199 5.409643 AATGTATATGCTCAAGTCAACGC 57.590 39.130 0.00 0.00 0.00 4.84
199 200 8.817100 TCTAAAATGTATATGCTCAAGTCAACG 58.183 33.333 0.00 0.00 0.00 4.10
200 201 9.922305 GTCTAAAATGTATATGCTCAAGTCAAC 57.078 33.333 0.00 0.00 0.00 3.18
201 202 9.665719 TGTCTAAAATGTATATGCTCAAGTCAA 57.334 29.630 0.00 0.00 0.00 3.18
202 203 9.665719 TTGTCTAAAATGTATATGCTCAAGTCA 57.334 29.630 0.00 0.00 0.00 3.41
204 205 9.890629 TCTTGTCTAAAATGTATATGCTCAAGT 57.109 29.630 0.00 0.00 32.31 3.16
215 216 9.667107 CTTACCCTCATTCTTGTCTAAAATGTA 57.333 33.333 0.00 0.00 33.22 2.29
216 217 8.383175 TCTTACCCTCATTCTTGTCTAAAATGT 58.617 33.333 0.00 0.00 33.22 2.71
217 218 8.792830 TCTTACCCTCATTCTTGTCTAAAATG 57.207 34.615 0.00 0.00 0.00 2.32
218 219 9.232473 GTTCTTACCCTCATTCTTGTCTAAAAT 57.768 33.333 0.00 0.00 0.00 1.82
219 220 8.215050 TGTTCTTACCCTCATTCTTGTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
220 221 7.741785 TGTTCTTACCCTCATTCTTGTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
221 222 7.311092 TGTTCTTACCCTCATTCTTGTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
222 223 6.928348 TGTTCTTACCCTCATTCTTGTCTA 57.072 37.500 0.00 0.00 0.00 2.59
223 224 5.825593 TGTTCTTACCCTCATTCTTGTCT 57.174 39.130 0.00 0.00 0.00 3.41
224 225 5.998363 ACTTGTTCTTACCCTCATTCTTGTC 59.002 40.000 0.00 0.00 0.00 3.18
225 226 5.941788 ACTTGTTCTTACCCTCATTCTTGT 58.058 37.500 0.00 0.00 0.00 3.16
226 227 6.884280 AACTTGTTCTTACCCTCATTCTTG 57.116 37.500 0.00 0.00 0.00 3.02
227 228 6.265422 CCAAACTTGTTCTTACCCTCATTCTT 59.735 38.462 0.00 0.00 0.00 2.52
228 229 5.770162 CCAAACTTGTTCTTACCCTCATTCT 59.230 40.000 0.00 0.00 0.00 2.40
229 230 5.564848 GCCAAACTTGTTCTTACCCTCATTC 60.565 44.000 0.00 0.00 0.00 2.67
230 231 4.280929 GCCAAACTTGTTCTTACCCTCATT 59.719 41.667 0.00 0.00 0.00 2.57
231 232 3.826729 GCCAAACTTGTTCTTACCCTCAT 59.173 43.478 0.00 0.00 0.00 2.90
232 233 3.219281 GCCAAACTTGTTCTTACCCTCA 58.781 45.455 0.00 0.00 0.00 3.86
233 234 2.225727 CGCCAAACTTGTTCTTACCCTC 59.774 50.000 0.00 0.00 0.00 4.30
234 235 2.227194 CGCCAAACTTGTTCTTACCCT 58.773 47.619 0.00 0.00 0.00 4.34
235 236 1.951602 ACGCCAAACTTGTTCTTACCC 59.048 47.619 0.00 0.00 0.00 3.69
236 237 3.703286 AACGCCAAACTTGTTCTTACC 57.297 42.857 0.00 0.00 0.00 2.85
237 238 3.794564 CCAAACGCCAAACTTGTTCTTAC 59.205 43.478 0.00 0.00 0.00 2.34
238 239 3.695060 TCCAAACGCCAAACTTGTTCTTA 59.305 39.130 0.00 0.00 0.00 2.10
239 240 2.494073 TCCAAACGCCAAACTTGTTCTT 59.506 40.909 0.00 0.00 0.00 2.52
240 241 2.096248 TCCAAACGCCAAACTTGTTCT 58.904 42.857 0.00 0.00 0.00 3.01
241 242 2.159296 AGTCCAAACGCCAAACTTGTTC 60.159 45.455 0.00 0.00 0.00 3.18
242 243 1.822371 AGTCCAAACGCCAAACTTGTT 59.178 42.857 0.00 0.00 0.00 2.83
243 244 1.470051 AGTCCAAACGCCAAACTTGT 58.530 45.000 0.00 0.00 0.00 3.16
244 245 2.159310 TCAAGTCCAAACGCCAAACTTG 60.159 45.455 7.12 7.12 45.10 3.16
245 246 2.096248 TCAAGTCCAAACGCCAAACTT 58.904 42.857 0.00 0.00 0.00 2.66
246 247 1.676006 CTCAAGTCCAAACGCCAAACT 59.324 47.619 0.00 0.00 0.00 2.66
247 248 1.673920 TCTCAAGTCCAAACGCCAAAC 59.326 47.619 0.00 0.00 0.00 2.93
248 249 2.045561 TCTCAAGTCCAAACGCCAAA 57.954 45.000 0.00 0.00 0.00 3.28
249 250 2.270352 ATCTCAAGTCCAAACGCCAA 57.730 45.000 0.00 0.00 0.00 4.52
250 251 2.270352 AATCTCAAGTCCAAACGCCA 57.730 45.000 0.00 0.00 0.00 5.69
251 252 3.938963 TCATAATCTCAAGTCCAAACGCC 59.061 43.478 0.00 0.00 0.00 5.68
252 253 4.870426 TCTCATAATCTCAAGTCCAAACGC 59.130 41.667 0.00 0.00 0.00 4.84
253 254 6.368791 TGTTCTCATAATCTCAAGTCCAAACG 59.631 38.462 0.00 0.00 0.00 3.60
254 255 7.672983 TGTTCTCATAATCTCAAGTCCAAAC 57.327 36.000 0.00 0.00 0.00 2.93
255 256 8.690203 TTTGTTCTCATAATCTCAAGTCCAAA 57.310 30.769 0.00 0.00 0.00 3.28
256 257 8.690203 TTTTGTTCTCATAATCTCAAGTCCAA 57.310 30.769 0.00 0.00 0.00 3.53
257 258 8.868522 ATTTTGTTCTCATAATCTCAAGTCCA 57.131 30.769 0.00 0.00 0.00 4.02
258 259 9.565213 CAATTTTGTTCTCATAATCTCAAGTCC 57.435 33.333 0.00 0.00 0.00 3.85
259 260 9.070149 GCAATTTTGTTCTCATAATCTCAAGTC 57.930 33.333 0.00 0.00 0.00 3.01
260 261 8.579006 TGCAATTTTGTTCTCATAATCTCAAGT 58.421 29.630 0.00 0.00 0.00 3.16
261 262 8.975410 TGCAATTTTGTTCTCATAATCTCAAG 57.025 30.769 0.00 0.00 0.00 3.02
262 263 9.932207 AATGCAATTTTGTTCTCATAATCTCAA 57.068 25.926 0.00 0.00 26.74 3.02
295 296 9.671279 TCTGAATATGAATTTTTGCTACTCTGA 57.329 29.630 0.00 0.00 0.00 3.27
298 299 9.890352 GGATCTGAATATGAATTTTTGCTACTC 57.110 33.333 0.00 0.00 0.00 2.59
299 300 8.562892 CGGATCTGAATATGAATTTTTGCTACT 58.437 33.333 0.00 0.00 0.00 2.57
300 301 8.345565 ACGGATCTGAATATGAATTTTTGCTAC 58.654 33.333 9.00 0.00 0.00 3.58
301 302 8.344831 CACGGATCTGAATATGAATTTTTGCTA 58.655 33.333 9.00 0.00 0.00 3.49
302 303 7.067372 TCACGGATCTGAATATGAATTTTTGCT 59.933 33.333 9.00 0.00 0.00 3.91
303 304 7.195646 TCACGGATCTGAATATGAATTTTTGC 58.804 34.615 9.00 0.00 0.00 3.68
304 305 9.013490 GTTCACGGATCTGAATATGAATTTTTG 57.987 33.333 9.00 0.00 32.78 2.44
305 306 7.910162 CGTTCACGGATCTGAATATGAATTTTT 59.090 33.333 9.00 0.00 32.78 1.94
306 307 7.279981 TCGTTCACGGATCTGAATATGAATTTT 59.720 33.333 9.00 0.00 40.29 1.82
307 308 6.761242 TCGTTCACGGATCTGAATATGAATTT 59.239 34.615 9.00 0.00 40.29 1.82
308 309 6.201044 GTCGTTCACGGATCTGAATATGAATT 59.799 38.462 9.00 0.00 40.29 2.17
309 310 5.692204 GTCGTTCACGGATCTGAATATGAAT 59.308 40.000 9.00 0.00 40.29 2.57
310 311 5.041287 GTCGTTCACGGATCTGAATATGAA 58.959 41.667 9.00 4.88 40.29 2.57
311 312 4.338400 AGTCGTTCACGGATCTGAATATGA 59.662 41.667 9.00 0.00 40.29 2.15
312 313 4.611943 AGTCGTTCACGGATCTGAATATG 58.388 43.478 9.00 0.00 40.29 1.78
313 314 4.338400 TGAGTCGTTCACGGATCTGAATAT 59.662 41.667 9.00 0.00 40.29 1.28
314 315 3.692593 TGAGTCGTTCACGGATCTGAATA 59.307 43.478 9.00 0.00 40.29 1.75
315 316 2.492088 TGAGTCGTTCACGGATCTGAAT 59.508 45.455 9.00 0.00 40.29 2.57
316 317 1.883926 TGAGTCGTTCACGGATCTGAA 59.116 47.619 9.00 0.37 40.29 3.02
317 318 1.530323 TGAGTCGTTCACGGATCTGA 58.470 50.000 9.00 0.00 40.29 3.27
318 319 2.568696 ATGAGTCGTTCACGGATCTG 57.431 50.000 0.00 0.00 38.99 2.90
319 320 2.231478 ACAATGAGTCGTTCACGGATCT 59.769 45.455 0.00 0.00 38.99 2.75
320 321 2.607187 ACAATGAGTCGTTCACGGATC 58.393 47.619 0.00 0.00 38.99 3.36
321 322 2.743636 ACAATGAGTCGTTCACGGAT 57.256 45.000 0.00 0.00 38.99 4.18
322 323 2.035449 AGAACAATGAGTCGTTCACGGA 59.965 45.455 10.72 0.00 43.20 4.69
323 324 2.404215 AGAACAATGAGTCGTTCACGG 58.596 47.619 10.72 0.00 43.20 4.94
324 325 3.362986 CCAAGAACAATGAGTCGTTCACG 60.363 47.826 10.72 0.00 43.20 4.35
325 326 3.560068 ACCAAGAACAATGAGTCGTTCAC 59.440 43.478 10.72 0.23 43.20 3.18
326 327 3.559655 CACCAAGAACAATGAGTCGTTCA 59.440 43.478 10.72 0.00 43.20 3.18
327 328 3.560068 ACACCAAGAACAATGAGTCGTTC 59.440 43.478 0.00 0.00 41.48 3.95
328 329 3.541632 ACACCAAGAACAATGAGTCGTT 58.458 40.909 0.00 0.00 0.00 3.85
329 330 3.131396 GACACCAAGAACAATGAGTCGT 58.869 45.455 0.00 0.00 0.00 4.34
330 331 2.480419 GGACACCAAGAACAATGAGTCG 59.520 50.000 0.00 0.00 0.00 4.18
331 332 3.499918 CAGGACACCAAGAACAATGAGTC 59.500 47.826 0.00 0.00 0.00 3.36
332 333 3.117888 ACAGGACACCAAGAACAATGAGT 60.118 43.478 0.00 0.00 0.00 3.41
333 334 3.480470 ACAGGACACCAAGAACAATGAG 58.520 45.455 0.00 0.00 0.00 2.90
334 335 3.476552 GACAGGACACCAAGAACAATGA 58.523 45.455 0.00 0.00 0.00 2.57
335 336 2.554032 GGACAGGACACCAAGAACAATG 59.446 50.000 0.00 0.00 0.00 2.82
336 337 2.443255 AGGACAGGACACCAAGAACAAT 59.557 45.455 0.00 0.00 0.00 2.71
337 338 1.843851 AGGACAGGACACCAAGAACAA 59.156 47.619 0.00 0.00 0.00 2.83
338 339 1.507140 AGGACAGGACACCAAGAACA 58.493 50.000 0.00 0.00 0.00 3.18
339 340 2.618709 CAAAGGACAGGACACCAAGAAC 59.381 50.000 0.00 0.00 0.00 3.01
340 341 2.507886 TCAAAGGACAGGACACCAAGAA 59.492 45.455 0.00 0.00 0.00 2.52
341 342 2.123589 TCAAAGGACAGGACACCAAGA 58.876 47.619 0.00 0.00 0.00 3.02
342 343 2.638480 TCAAAGGACAGGACACCAAG 57.362 50.000 0.00 0.00 0.00 3.61
343 344 2.930950 CTTCAAAGGACAGGACACCAA 58.069 47.619 0.00 0.00 0.00 3.67
344 345 1.476833 GCTTCAAAGGACAGGACACCA 60.477 52.381 0.00 0.00 0.00 4.17
345 346 1.239347 GCTTCAAAGGACAGGACACC 58.761 55.000 0.00 0.00 0.00 4.16
346 347 0.868406 CGCTTCAAAGGACAGGACAC 59.132 55.000 0.00 0.00 0.00 3.67
347 348 0.756294 TCGCTTCAAAGGACAGGACA 59.244 50.000 0.00 0.00 0.00 4.02
348 349 1.734465 CATCGCTTCAAAGGACAGGAC 59.266 52.381 0.00 0.00 0.00 3.85
349 350 1.945819 GCATCGCTTCAAAGGACAGGA 60.946 52.381 0.00 0.00 0.00 3.86
350 351 0.449388 GCATCGCTTCAAAGGACAGG 59.551 55.000 0.00 0.00 0.00 4.00
351 352 1.129998 CAGCATCGCTTCAAAGGACAG 59.870 52.381 0.00 0.00 36.40 3.51
352 353 1.159285 CAGCATCGCTTCAAAGGACA 58.841 50.000 0.00 0.00 36.40 4.02
353 354 0.179179 GCAGCATCGCTTCAAAGGAC 60.179 55.000 0.00 0.00 36.40 3.85
354 355 0.321919 AGCAGCATCGCTTCAAAGGA 60.322 50.000 0.00 0.00 39.99 3.36
355 356 0.179171 CAGCAGCATCGCTTCAAAGG 60.179 55.000 0.00 0.00 41.38 3.11
356 357 0.797249 GCAGCAGCATCGCTTCAAAG 60.797 55.000 0.00 0.00 41.38 2.77
357 358 1.210931 GCAGCAGCATCGCTTCAAA 59.789 52.632 0.00 0.00 41.38 2.69
358 359 1.673337 AGCAGCAGCATCGCTTCAA 60.673 52.632 3.17 0.00 45.49 2.69
359 360 2.046604 AGCAGCAGCATCGCTTCA 60.047 55.556 3.17 0.00 45.49 3.02
360 361 2.403987 CAGCAGCAGCATCGCTTC 59.596 61.111 3.17 0.00 45.49 3.86
361 362 3.812019 GCAGCAGCAGCATCGCTT 61.812 61.111 4.63 0.00 45.49 4.68
370 371 2.446142 GACTCTGGTCTGCAGCAGCA 62.446 60.000 18.43 12.70 46.18 4.41
371 372 1.741032 GACTCTGGTCTGCAGCAGC 60.741 63.158 18.43 12.48 46.18 5.25
373 374 2.147315 GACGACTCTGGTCTGCAGCA 62.147 60.000 9.47 0.70 40.10 4.41
374 375 1.445238 GACGACTCTGGTCTGCAGC 60.445 63.158 9.47 4.04 40.10 5.25
375 376 1.154131 CGACGACTCTGGTCTGCAG 60.154 63.158 7.63 7.63 40.10 4.41
376 377 1.853114 GACGACGACTCTGGTCTGCA 61.853 60.000 0.00 0.00 40.10 4.41
377 378 1.154188 GACGACGACTCTGGTCTGC 60.154 63.158 0.00 0.00 40.10 4.26
378 379 1.132844 CGACGACGACTCTGGTCTG 59.867 63.158 0.00 0.00 42.66 3.51
379 380 1.005275 TCGACGACGACTCTGGTCT 60.005 57.895 5.75 0.00 43.81 3.85
380 381 3.559024 TCGACGACGACTCTGGTC 58.441 61.111 5.75 0.00 43.81 4.02
385 386 3.929641 ATCGGAGATTCGACGACGACTC 61.930 54.545 17.10 17.10 43.86 3.36
386 387 2.073213 ATCGGAGATTCGACGACGACT 61.073 52.381 9.98 4.40 43.86 4.18
387 388 0.304098 ATCGGAGATTCGACGACGAC 59.696 55.000 9.98 0.00 43.86 4.34
388 389 0.303796 CATCGGAGATTCGACGACGA 59.696 55.000 5.75 5.75 45.12 4.20
389 390 0.303796 TCATCGGAGATTCGACGACG 59.696 55.000 0.00 0.00 45.12 5.12
390 391 1.922444 GCTCATCGGAGATTCGACGAC 60.922 57.143 0.00 0.00 44.26 4.34
391 392 0.308068 GCTCATCGGAGATTCGACGA 59.692 55.000 7.90 7.90 44.26 4.20
392 393 0.661780 GGCTCATCGGAGATTCGACG 60.662 60.000 0.00 0.00 44.26 5.12
393 394 0.661780 CGGCTCATCGGAGATTCGAC 60.662 60.000 0.00 0.00 44.26 4.20
394 395 1.101635 ACGGCTCATCGGAGATTCGA 61.102 55.000 0.00 0.00 44.26 3.71
395 396 0.936764 CACGGCTCATCGGAGATTCG 60.937 60.000 0.00 0.00 44.26 3.34
396 397 1.218230 GCACGGCTCATCGGAGATTC 61.218 60.000 0.00 0.00 44.26 2.52
397 398 1.227380 GCACGGCTCATCGGAGATT 60.227 57.895 0.00 0.00 44.26 2.40
398 399 2.419198 GCACGGCTCATCGGAGAT 59.581 61.111 0.00 0.00 44.26 2.75
399 400 4.193334 CGCACGGCTCATCGGAGA 62.193 66.667 0.00 0.00 44.26 3.71
400 401 4.498520 ACGCACGGCTCATCGGAG 62.499 66.667 0.00 0.00 44.33 4.63
401 402 4.492160 GACGCACGGCTCATCGGA 62.492 66.667 0.00 0.00 0.00 4.55
402 403 2.990674 CTAGACGCACGGCTCATCGG 62.991 65.000 0.00 0.00 34.01 4.18
403 404 1.655654 CTAGACGCACGGCTCATCG 60.656 63.158 0.00 0.00 34.01 3.84
404 405 0.100682 TTCTAGACGCACGGCTCATC 59.899 55.000 0.00 0.00 34.01 2.92
405 406 0.101399 CTTCTAGACGCACGGCTCAT 59.899 55.000 0.00 0.00 34.01 2.90
406 407 1.506718 CTTCTAGACGCACGGCTCA 59.493 57.895 0.00 0.00 34.01 4.26
407 408 1.226717 CCTTCTAGACGCACGGCTC 60.227 63.158 0.00 0.00 34.01 4.70
408 409 1.658686 CTCCTTCTAGACGCACGGCT 61.659 60.000 2.93 2.93 37.24 5.52
409 410 1.226717 CTCCTTCTAGACGCACGGC 60.227 63.158 0.00 0.00 0.00 5.68
410 411 1.376543 TACTCCTTCTAGACGCACGG 58.623 55.000 0.00 0.00 0.00 4.94
411 412 3.694535 ATTACTCCTTCTAGACGCACG 57.305 47.619 0.00 0.00 0.00 5.34
412 413 4.799428 GTCAATTACTCCTTCTAGACGCAC 59.201 45.833 0.00 0.00 0.00 5.34
413 414 4.461431 TGTCAATTACTCCTTCTAGACGCA 59.539 41.667 0.00 0.00 0.00 5.24
414 415 4.995124 TGTCAATTACTCCTTCTAGACGC 58.005 43.478 0.00 0.00 0.00 5.19
415 416 7.884816 TTTTGTCAATTACTCCTTCTAGACG 57.115 36.000 0.00 0.00 0.00 4.18
460 462 0.963962 GTGGTAGTTCTGTGGGACGA 59.036 55.000 0.00 0.00 0.00 4.20
575 578 1.072505 GGCCGGGTCTGTCAGAAAA 59.927 57.895 3.51 0.00 0.00 2.29
772 794 0.179150 CCGGAGTGCGAGAAGAAGAG 60.179 60.000 5.27 0.00 0.00 2.85
1522 1572 4.040829 TGATACATATCCCAGAGCTTGGTG 59.959 45.833 12.18 7.54 46.25 4.17
1766 1823 8.413309 TTCTCCATTTGAATCTCAATCTTTGT 57.587 30.769 0.00 0.00 36.11 2.83
1957 2014 5.679734 TCTTGTCTAGCTTTTCTTTGCAG 57.320 39.130 0.00 0.00 0.00 4.41
2123 2184 6.493166 ACCAAAATGATCTGAAACCATAGGA 58.507 36.000 0.00 0.00 0.00 2.94
2296 4115 9.562408 TCAATGTTGTTTGGTGTTACTAGATTA 57.438 29.630 0.00 0.00 0.00 1.75
2360 4233 5.791336 TGTGTTATCTATGCTACCTCCTG 57.209 43.478 0.00 0.00 0.00 3.86
2673 4581 0.179037 CCAGATCATCGCACCACCAT 60.179 55.000 0.00 0.00 0.00 3.55
2841 4749 0.398664 CCGAGGTAAGGGGATCCTGT 60.399 60.000 12.58 0.00 44.07 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.