Multiple sequence alignment - TraesCS5A01G449700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G449700 chr5A 100.000 2648 0 0 1 2648 631529759 631532406 0.000000e+00 4891.0
1 TraesCS5A01G449700 chr5A 88.667 1756 187 6 782 2529 631641507 631643258 0.000000e+00 2130.0
2 TraesCS5A01G449700 chr5A 88.008 1009 111 4 1499 2505 631629209 631630209 0.000000e+00 1184.0
3 TraesCS5A01G449700 chr5A 88.051 862 89 12 666 1521 631627290 631628143 0.000000e+00 1009.0
4 TraesCS5A01G449700 chr5A 76.494 251 44 9 119 360 631640890 631641134 3.580000e-24 122.0
5 TraesCS5A01G449700 chr5D 90.989 1942 143 22 586 2505 503470202 503472133 0.000000e+00 2588.0
6 TraesCS5A01G449700 chr5D 86.923 1950 241 9 573 2515 503641902 503643844 0.000000e+00 2176.0
7 TraesCS5A01G449700 chr5D 85.533 2053 245 27 625 2648 503502170 503504199 0.000000e+00 2098.0
8 TraesCS5A01G449700 chr5D 88.219 1757 185 10 775 2529 503651145 503652881 0.000000e+00 2078.0
9 TraesCS5A01G449700 chr5D 88.168 1758 183 13 782 2529 503431217 503432959 0.000000e+00 2071.0
10 TraesCS5A01G449700 chr5D 86.747 996 104 15 575 1566 503636148 503637119 0.000000e+00 1083.0
11 TraesCS5A01G449700 chr5D 82.783 848 115 18 1814 2648 503637112 503637941 0.000000e+00 728.0
12 TraesCS5A01G449700 chr5D 82.556 493 80 5 2046 2535 503644446 503644935 1.880000e-116 429.0
13 TraesCS5A01G449700 chr5D 85.093 161 21 3 614 772 503650899 503651058 7.590000e-36 161.0
14 TraesCS5A01G449700 chr5D 83.036 112 18 1 457 567 285464056 285463945 1.680000e-17 100.0
15 TraesCS5A01G449700 chr5B 85.775 2116 248 27 574 2648 632126434 632128537 0.000000e+00 2191.0
16 TraesCS5A01G449700 chr2D 73.679 946 231 17 998 1934 602783219 602782283 4.190000e-93 351.0
17 TraesCS5A01G449700 chr6B 100.000 120 0 0 1 120 123478631 123478512 3.430000e-54 222.0
18 TraesCS5A01G449700 chr7B 100.000 119 0 0 1 119 355734368 355734250 1.230000e-53 220.0
19 TraesCS5A01G449700 chr4B 100.000 119 0 0 1 119 66619642 66619524 1.230000e-53 220.0
20 TraesCS5A01G449700 chr4B 87.500 64 7 1 493 555 472388568 472388631 3.660000e-09 73.1
21 TraesCS5A01G449700 chr1A 98.413 126 1 1 1 125 512488826 512488951 1.230000e-53 220.0
22 TraesCS5A01G449700 chr1A 84.810 79 11 1 483 560 425727743 425727665 7.860000e-11 78.7
23 TraesCS5A01G449700 chr6A 100.000 118 0 0 1 118 573857106 573857223 4.440000e-53 219.0
24 TraesCS5A01G449700 chr6A 96.875 128 2 2 1 128 79284383 79284508 2.060000e-51 213.0
25 TraesCS5A01G449700 chr1B 100.000 118 0 0 1 118 143043105 143042988 4.440000e-53 219.0
26 TraesCS5A01G449700 chr7A 98.374 123 2 0 1 123 353222164 353222042 1.600000e-52 217.0
27 TraesCS5A01G449700 chr4A 98.374 123 2 0 1 123 715755133 715755011 1.600000e-52 217.0
28 TraesCS5A01G449700 chr4A 85.333 75 10 1 493 566 67170565 67170639 2.830000e-10 76.8
29 TraesCS5A01G449700 chr3D 85.542 83 10 2 483 564 373478281 373478362 4.700000e-13 86.1
30 TraesCS5A01G449700 chr3B 88.235 68 7 1 483 549 487215994 487216061 2.180000e-11 80.5
31 TraesCS5A01G449700 chr4D 85.333 75 10 1 493 566 385735398 385735472 2.830000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G449700 chr5A 631529759 631532406 2647 False 4891.0 4891 100.00000 1 2648 1 chr5A.!!$F1 2647
1 TraesCS5A01G449700 chr5A 631640890 631643258 2368 False 1126.0 2130 82.58050 119 2529 2 chr5A.!!$F3 2410
2 TraesCS5A01G449700 chr5A 631627290 631630209 2919 False 1096.5 1184 88.02950 666 2505 2 chr5A.!!$F2 1839
3 TraesCS5A01G449700 chr5D 503470202 503472133 1931 False 2588.0 2588 90.98900 586 2505 1 chr5D.!!$F2 1919
4 TraesCS5A01G449700 chr5D 503502170 503504199 2029 False 2098.0 2098 85.53300 625 2648 1 chr5D.!!$F3 2023
5 TraesCS5A01G449700 chr5D 503431217 503432959 1742 False 2071.0 2071 88.16800 782 2529 1 chr5D.!!$F1 1747
6 TraesCS5A01G449700 chr5D 503650899 503652881 1982 False 1119.5 2078 86.65600 614 2529 2 chr5D.!!$F5 1915
7 TraesCS5A01G449700 chr5D 503636148 503644935 8787 False 1104.0 2176 84.75225 573 2648 4 chr5D.!!$F4 2075
8 TraesCS5A01G449700 chr5B 632126434 632128537 2103 False 2191.0 2191 85.77500 574 2648 1 chr5B.!!$F1 2074
9 TraesCS5A01G449700 chr2D 602782283 602783219 936 True 351.0 351 73.67900 998 1934 1 chr2D.!!$R1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 561 0.036765 GGCGACACCTGGTGATTACA 60.037 55.0 32.3 0.0 36.96 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2530 9553 0.301687 CGTGTGAGATTATGCGGCAC 59.698 55.0 4.03 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.346181 AACAGAACTCTATCCTAACAGCC 57.654 43.478 0.00 0.00 0.00 4.85
23 24 4.353777 ACAGAACTCTATCCTAACAGCCA 58.646 43.478 0.00 0.00 0.00 4.75
24 25 4.404073 ACAGAACTCTATCCTAACAGCCAG 59.596 45.833 0.00 0.00 0.00 4.85
25 26 4.404073 CAGAACTCTATCCTAACAGCCAGT 59.596 45.833 0.00 0.00 0.00 4.00
26 27 4.647399 AGAACTCTATCCTAACAGCCAGTC 59.353 45.833 0.00 0.00 0.00 3.51
27 28 3.301274 ACTCTATCCTAACAGCCAGTCC 58.699 50.000 0.00 0.00 0.00 3.85
28 29 3.052490 ACTCTATCCTAACAGCCAGTCCT 60.052 47.826 0.00 0.00 0.00 3.85
29 30 3.964031 CTCTATCCTAACAGCCAGTCCTT 59.036 47.826 0.00 0.00 0.00 3.36
30 31 3.706594 TCTATCCTAACAGCCAGTCCTTG 59.293 47.826 0.00 0.00 0.00 3.61
31 32 2.024176 TCCTAACAGCCAGTCCTTGA 57.976 50.000 0.00 0.00 0.00 3.02
32 33 2.551270 TCCTAACAGCCAGTCCTTGAT 58.449 47.619 0.00 0.00 0.00 2.57
33 34 2.237143 TCCTAACAGCCAGTCCTTGATG 59.763 50.000 0.00 0.00 0.00 3.07
34 35 2.636830 CTAACAGCCAGTCCTTGATGG 58.363 52.381 0.00 0.00 39.73 3.51
35 36 0.773644 AACAGCCAGTCCTTGATGGT 59.226 50.000 0.00 0.00 38.91 3.55
36 37 0.326264 ACAGCCAGTCCTTGATGGTC 59.674 55.000 0.00 0.00 38.91 4.02
37 38 0.393537 CAGCCAGTCCTTGATGGTCC 60.394 60.000 0.00 0.00 38.91 4.46
38 39 0.842030 AGCCAGTCCTTGATGGTCCA 60.842 55.000 0.00 0.00 38.91 4.02
39 40 0.393537 GCCAGTCCTTGATGGTCCAG 60.394 60.000 0.00 0.00 38.91 3.86
40 41 0.254178 CCAGTCCTTGATGGTCCAGG 59.746 60.000 0.00 0.00 37.07 4.45
41 42 1.279496 CAGTCCTTGATGGTCCAGGA 58.721 55.000 0.00 0.00 37.07 3.86
42 43 1.065854 CAGTCCTTGATGGTCCAGGAC 60.066 57.143 16.79 16.79 46.75 3.85
43 44 1.280457 GTCCTTGATGGTCCAGGACT 58.720 55.000 19.57 0.00 43.98 3.85
44 45 1.630878 GTCCTTGATGGTCCAGGACTT 59.369 52.381 19.57 7.40 43.98 3.01
45 46 2.040412 GTCCTTGATGGTCCAGGACTTT 59.960 50.000 19.57 7.03 43.98 2.66
46 47 3.263425 GTCCTTGATGGTCCAGGACTTTA 59.737 47.826 19.57 6.86 43.98 1.85
47 48 4.080299 GTCCTTGATGGTCCAGGACTTTAT 60.080 45.833 19.57 11.25 43.98 1.40
48 49 4.164221 TCCTTGATGGTCCAGGACTTTATC 59.836 45.833 19.57 18.53 37.07 1.75
49 50 6.871224 TCCTTGATGGTCCAGGACTTTATCC 61.871 48.000 19.57 1.87 41.77 2.59
60 61 4.074627 GGACTTTATCCTCCTAACTGCC 57.925 50.000 0.00 0.00 45.22 4.85
61 62 3.454812 GGACTTTATCCTCCTAACTGCCA 59.545 47.826 0.00 0.00 45.22 4.92
62 63 4.443621 GACTTTATCCTCCTAACTGCCAC 58.556 47.826 0.00 0.00 0.00 5.01
63 64 3.844211 ACTTTATCCTCCTAACTGCCACA 59.156 43.478 0.00 0.00 0.00 4.17
64 65 4.288626 ACTTTATCCTCCTAACTGCCACAA 59.711 41.667 0.00 0.00 0.00 3.33
65 66 4.487714 TTATCCTCCTAACTGCCACAAG 57.512 45.455 0.00 0.00 0.00 3.16
66 67 0.984230 TCCTCCTAACTGCCACAAGG 59.016 55.000 0.00 0.00 38.23 3.61
67 68 0.984230 CCTCCTAACTGCCACAAGGA 59.016 55.000 0.00 0.00 36.89 3.36
68 69 1.339151 CCTCCTAACTGCCACAAGGAC 60.339 57.143 0.00 0.00 36.89 3.85
69 70 0.690762 TCCTAACTGCCACAAGGACC 59.309 55.000 0.00 0.00 36.89 4.46
70 71 0.400213 CCTAACTGCCACAAGGACCA 59.600 55.000 0.00 0.00 36.89 4.02
71 72 1.004745 CCTAACTGCCACAAGGACCAT 59.995 52.381 0.00 0.00 36.89 3.55
72 73 2.086869 CTAACTGCCACAAGGACCATG 58.913 52.381 0.00 0.00 36.89 3.66
73 74 0.185901 AACTGCCACAAGGACCATGT 59.814 50.000 0.00 0.00 36.89 3.21
74 75 0.538057 ACTGCCACAAGGACCATGTG 60.538 55.000 20.60 20.60 46.05 3.21
75 76 1.870055 CTGCCACAAGGACCATGTGC 61.870 60.000 21.84 17.31 45.32 4.57
76 77 1.604593 GCCACAAGGACCATGTGCT 60.605 57.895 21.84 0.00 45.32 4.40
77 78 1.870055 GCCACAAGGACCATGTGCTG 61.870 60.000 21.84 11.91 45.32 4.41
78 79 1.582968 CACAAGGACCATGTGCTGC 59.417 57.895 16.36 0.00 41.42 5.25
79 80 1.151221 ACAAGGACCATGTGCTGCA 59.849 52.632 0.52 0.00 33.74 4.41
80 81 0.892358 ACAAGGACCATGTGCTGCAG 60.892 55.000 10.11 10.11 33.74 4.41
81 82 1.975407 AAGGACCATGTGCTGCAGC 60.975 57.895 31.89 31.89 33.74 5.25
82 83 3.446570 GGACCATGTGCTGCAGCC 61.447 66.667 34.64 25.13 41.18 4.85
83 84 3.446570 GACCATGTGCTGCAGCCC 61.447 66.667 34.64 25.41 41.18 5.19
86 87 3.755628 CATGTGCTGCAGCCCCAC 61.756 66.667 34.64 25.80 41.18 4.61
87 88 4.289101 ATGTGCTGCAGCCCCACA 62.289 61.111 34.64 30.21 42.87 4.17
88 89 3.813606 ATGTGCTGCAGCCCCACAA 62.814 57.895 34.64 13.43 42.10 3.33
89 90 3.677648 GTGCTGCAGCCCCACAAG 61.678 66.667 34.64 0.00 41.18 3.16
90 91 4.980702 TGCTGCAGCCCCACAAGG 62.981 66.667 34.64 0.00 41.18 3.61
91 92 4.666253 GCTGCAGCCCCACAAGGA 62.666 66.667 28.76 0.00 38.24 3.36
92 93 2.674380 CTGCAGCCCCACAAGGAC 60.674 66.667 0.00 0.00 38.24 3.85
93 94 4.284550 TGCAGCCCCACAAGGACC 62.285 66.667 0.00 0.00 38.24 4.46
95 96 3.260100 CAGCCCCACAAGGACCCT 61.260 66.667 0.00 0.00 38.24 4.34
96 97 1.923395 CAGCCCCACAAGGACCCTA 60.923 63.158 0.00 0.00 38.24 3.53
97 98 1.616628 AGCCCCACAAGGACCCTAG 60.617 63.158 0.00 0.00 38.24 3.02
98 99 1.923909 GCCCCACAAGGACCCTAGT 60.924 63.158 0.00 0.00 38.24 2.57
99 100 0.619543 GCCCCACAAGGACCCTAGTA 60.620 60.000 0.00 0.00 38.24 1.82
100 101 1.201424 CCCCACAAGGACCCTAGTAC 58.799 60.000 0.00 0.00 38.24 2.73
101 102 1.553884 CCCCACAAGGACCCTAGTACA 60.554 57.143 0.00 0.00 38.24 2.90
102 103 1.553704 CCCACAAGGACCCTAGTACAC 59.446 57.143 0.00 0.00 38.24 2.90
103 104 2.253610 CCACAAGGACCCTAGTACACA 58.746 52.381 0.00 0.00 36.89 3.72
104 105 2.233922 CCACAAGGACCCTAGTACACAG 59.766 54.545 0.00 0.00 36.89 3.66
105 106 3.162666 CACAAGGACCCTAGTACACAGA 58.837 50.000 0.00 0.00 0.00 3.41
106 107 3.056749 CACAAGGACCCTAGTACACAGAC 60.057 52.174 0.00 0.00 0.00 3.51
107 108 3.181420 ACAAGGACCCTAGTACACAGACT 60.181 47.826 0.00 0.00 0.00 3.24
108 109 3.829728 AGGACCCTAGTACACAGACTT 57.170 47.619 0.00 0.00 0.00 3.01
109 110 4.942363 AGGACCCTAGTACACAGACTTA 57.058 45.455 0.00 0.00 0.00 2.24
110 111 5.469210 AGGACCCTAGTACACAGACTTAT 57.531 43.478 0.00 0.00 0.00 1.73
111 112 5.447757 AGGACCCTAGTACACAGACTTATC 58.552 45.833 0.00 0.00 0.00 1.75
112 113 4.583907 GGACCCTAGTACACAGACTTATCC 59.416 50.000 0.00 0.00 0.00 2.59
113 114 5.198965 GACCCTAGTACACAGACTTATCCA 58.801 45.833 0.00 0.00 0.00 3.41
114 115 5.778542 ACCCTAGTACACAGACTTATCCAT 58.221 41.667 0.00 0.00 0.00 3.41
115 116 5.834204 ACCCTAGTACACAGACTTATCCATC 59.166 44.000 0.00 0.00 0.00 3.51
116 117 5.833667 CCCTAGTACACAGACTTATCCATCA 59.166 44.000 0.00 0.00 0.00 3.07
117 118 6.015856 CCCTAGTACACAGACTTATCCATCAG 60.016 46.154 0.00 0.00 0.00 2.90
120 121 6.634805 AGTACACAGACTTATCCATCAGTTG 58.365 40.000 0.00 0.00 0.00 3.16
130 131 1.171308 CCATCAGTTGCTTCAGTGGG 58.829 55.000 0.00 0.00 0.00 4.61
134 135 1.160137 CAGTTGCTTCAGTGGGTAGC 58.840 55.000 6.04 6.04 35.50 3.58
139 140 1.271379 TGCTTCAGTGGGTAGCTTTCC 60.271 52.381 0.00 0.00 35.93 3.13
155 156 3.002553 GCTTTCCACAGGTTTGCATTTTG 59.997 43.478 0.00 0.00 0.00 2.44
156 157 4.440880 CTTTCCACAGGTTTGCATTTTGA 58.559 39.130 0.00 0.00 0.00 2.69
161 163 4.211794 CCACAGGTTTGCATTTTGACATTC 59.788 41.667 0.00 0.00 0.00 2.67
162 164 4.211794 CACAGGTTTGCATTTTGACATTCC 59.788 41.667 0.00 0.00 0.00 3.01
164 166 4.449743 CAGGTTTGCATTTTGACATTCCAG 59.550 41.667 0.00 0.00 0.00 3.86
170 172 6.349243 TGCATTTTGACATTCCAGATCTTT 57.651 33.333 0.00 0.00 0.00 2.52
178 180 6.962182 TGACATTCCAGATCTTTGGTTCTAT 58.038 36.000 0.00 0.00 39.35 1.98
179 181 6.825213 TGACATTCCAGATCTTTGGTTCTATG 59.175 38.462 0.00 0.66 39.35 2.23
181 183 4.842531 TCCAGATCTTTGGTTCTATGCA 57.157 40.909 0.00 0.00 39.35 3.96
185 187 5.591472 CCAGATCTTTGGTTCTATGCATCAA 59.409 40.000 0.19 0.00 33.38 2.57
186 188 6.264744 CCAGATCTTTGGTTCTATGCATCAAT 59.735 38.462 0.19 0.00 33.38 2.57
188 190 7.648112 CAGATCTTTGGTTCTATGCATCAATTG 59.352 37.037 0.19 0.00 0.00 2.32
189 191 6.211587 TCTTTGGTTCTATGCATCAATTGG 57.788 37.500 0.19 0.00 0.00 3.16
193 195 5.964758 TGGTTCTATGCATCAATTGGTTTC 58.035 37.500 0.19 0.00 0.00 2.78
195 197 5.105392 GGTTCTATGCATCAATTGGTTTCCA 60.105 40.000 0.19 0.00 0.00 3.53
197 199 3.615224 ATGCATCAATTGGTTTCCACC 57.385 42.857 5.42 0.00 44.56 4.61
198 200 2.607499 TGCATCAATTGGTTTCCACCT 58.393 42.857 5.42 0.00 44.61 4.00
199 201 2.299582 TGCATCAATTGGTTTCCACCTG 59.700 45.455 5.42 0.00 44.61 4.00
201 203 3.614870 GCATCAATTGGTTTCCACCTGTC 60.615 47.826 5.42 0.00 44.61 3.51
202 204 2.593026 TCAATTGGTTTCCACCTGTCC 58.407 47.619 5.42 0.00 44.61 4.02
205 207 0.467290 TTGGTTTCCACCTGTCCTGC 60.467 55.000 0.00 0.00 44.61 4.85
206 208 1.352622 TGGTTTCCACCTGTCCTGCT 61.353 55.000 0.00 0.00 44.61 4.24
207 209 0.690762 GGTTTCCACCTGTCCTGCTA 59.309 55.000 0.00 0.00 40.44 3.49
208 210 1.339151 GGTTTCCACCTGTCCTGCTAG 60.339 57.143 0.00 0.00 40.44 3.42
209 211 1.348036 GTTTCCACCTGTCCTGCTAGT 59.652 52.381 0.00 0.00 0.00 2.57
210 212 0.976641 TTCCACCTGTCCTGCTAGTG 59.023 55.000 0.00 0.00 0.00 2.74
211 213 0.178932 TCCACCTGTCCTGCTAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
212 214 0.687354 CCACCTGTCCTGCTAGTGTT 59.313 55.000 0.00 0.00 0.00 3.32
215 217 3.430929 CCACCTGTCCTGCTAGTGTTATC 60.431 52.174 0.00 0.00 0.00 1.75
217 219 2.766263 CCTGTCCTGCTAGTGTTATCCA 59.234 50.000 0.00 0.00 0.00 3.41
220 222 5.023533 TGTCCTGCTAGTGTTATCCATTC 57.976 43.478 0.00 0.00 0.00 2.67
224 226 4.503991 CCTGCTAGTGTTATCCATTCTCCC 60.504 50.000 0.00 0.00 0.00 4.30
232 234 4.782691 TGTTATCCATTCTCCCTGTCAGAA 59.217 41.667 0.00 0.00 34.37 3.02
233 235 5.250543 TGTTATCCATTCTCCCTGTCAGAAA 59.749 40.000 0.00 0.00 33.57 2.52
234 236 3.988976 TCCATTCTCCCTGTCAGAAAG 57.011 47.619 0.00 0.00 33.57 2.62
235 237 2.026822 TCCATTCTCCCTGTCAGAAAGC 60.027 50.000 0.00 0.00 33.57 3.51
236 238 2.290514 CCATTCTCCCTGTCAGAAAGCA 60.291 50.000 0.00 0.00 33.57 3.91
237 239 2.550830 TTCTCCCTGTCAGAAAGCAC 57.449 50.000 0.00 0.00 0.00 4.40
238 240 1.722034 TCTCCCTGTCAGAAAGCACT 58.278 50.000 0.00 0.00 0.00 4.40
239 241 2.050144 TCTCCCTGTCAGAAAGCACTT 58.950 47.619 0.00 0.00 0.00 3.16
241 243 1.768275 TCCCTGTCAGAAAGCACTTGA 59.232 47.619 0.00 0.00 0.00 3.02
242 244 1.876156 CCCTGTCAGAAAGCACTTGAC 59.124 52.381 0.00 4.37 0.00 3.18
244 246 2.547211 CCTGTCAGAAAGCACTTGACTG 59.453 50.000 0.00 9.92 32.84 3.51
245 247 1.942657 TGTCAGAAAGCACTTGACTGC 59.057 47.619 10.56 8.14 37.44 4.40
280 289 1.678101 GCACCTGGATGCAGAATTACC 59.322 52.381 16.85 0.00 45.39 2.85
283 292 2.092212 ACCTGGATGCAGAATTACCCAG 60.092 50.000 16.85 0.00 40.48 4.45
284 293 2.092212 CCTGGATGCAGAATTACCCAGT 60.092 50.000 16.85 0.00 39.48 4.00
292 301 1.844497 AGAATTACCCAGTGCCTACCC 59.156 52.381 0.00 0.00 0.00 3.69
297 306 1.201429 ACCCAGTGCCTACCCTGAAG 61.201 60.000 0.00 0.00 0.00 3.02
303 312 1.267574 TGCCTACCCTGAAGCTCCAG 61.268 60.000 0.00 0.00 0.00 3.86
307 316 2.168728 CCTACCCTGAAGCTCCAGTTAC 59.831 54.545 0.00 0.00 32.43 2.50
315 324 1.183549 AGCTCCAGTTACTACCACGG 58.816 55.000 0.00 0.00 0.00 4.94
323 332 2.230750 AGTTACTACCACGGCAGAACTC 59.769 50.000 0.00 0.00 0.00 3.01
331 340 2.811431 CCACGGCAGAACTCAACAATAA 59.189 45.455 0.00 0.00 0.00 1.40
333 342 4.406069 CACGGCAGAACTCAACAATAATG 58.594 43.478 0.00 0.00 0.00 1.90
356 365 8.870075 ATGATTAATTTTGCTATCTCCTACCC 57.130 34.615 0.00 0.00 0.00 3.69
360 369 4.487714 TTTTGCTATCTCCTACCCACAG 57.512 45.455 0.00 0.00 0.00 3.66
362 371 2.667470 TGCTATCTCCTACCCACAGTC 58.333 52.381 0.00 0.00 0.00 3.51
365 374 2.060050 ATCTCCTACCCACAGTCTCG 57.940 55.000 0.00 0.00 0.00 4.04
366 375 0.680280 TCTCCTACCCACAGTCTCGC 60.680 60.000 0.00 0.00 0.00 5.03
371 380 1.255667 TACCCACAGTCTCGCCCTTC 61.256 60.000 0.00 0.00 0.00 3.46
372 381 2.266055 CCACAGTCTCGCCCTTCC 59.734 66.667 0.00 0.00 0.00 3.46
373 382 2.266055 CACAGTCTCGCCCTTCCC 59.734 66.667 0.00 0.00 0.00 3.97
374 383 2.120718 ACAGTCTCGCCCTTCCCT 59.879 61.111 0.00 0.00 0.00 4.20
375 384 1.536662 ACAGTCTCGCCCTTCCCTT 60.537 57.895 0.00 0.00 0.00 3.95
376 385 1.078848 CAGTCTCGCCCTTCCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
377 386 1.536662 AGTCTCGCCCTTCCCTTGT 60.537 57.895 0.00 0.00 0.00 3.16
378 387 1.376037 GTCTCGCCCTTCCCTTGTG 60.376 63.158 0.00 0.00 0.00 3.33
379 388 2.045926 CTCGCCCTTCCCTTGTGG 60.046 66.667 0.00 0.00 0.00 4.17
390 399 1.974543 CCTTGTGGGTGCAATTCCC 59.025 57.895 3.87 3.87 44.81 3.97
391 400 0.542702 CCTTGTGGGTGCAATTCCCT 60.543 55.000 11.87 0.00 44.84 4.20
396 405 0.413037 TGGGTGCAATTCCCTCCATT 59.587 50.000 11.87 0.00 44.84 3.16
408 417 2.239654 TCCCTCCATTGATGAAGTCCAC 59.760 50.000 0.00 0.00 0.00 4.02
411 420 3.561960 CCTCCATTGATGAAGTCCACCAA 60.562 47.826 0.00 0.00 0.00 3.67
413 422 3.156293 CCATTGATGAAGTCCACCAACA 58.844 45.455 0.00 0.00 0.00 3.33
415 424 4.039004 CCATTGATGAAGTCCACCAACAAA 59.961 41.667 0.00 0.00 0.00 2.83
425 446 8.043710 TGAAGTCCACCAACAAAATTAAACAAT 58.956 29.630 0.00 0.00 0.00 2.71
447 468 8.603181 ACAATTTTGTGCAAATTACTGAAGAAC 58.397 29.630 0.00 0.00 42.28 3.01
448 469 7.713764 ATTTTGTGCAAATTACTGAAGAACC 57.286 32.000 0.00 0.00 30.09 3.62
450 471 5.843673 TGTGCAAATTACTGAAGAACCAA 57.156 34.783 0.00 0.00 0.00 3.67
451 472 5.587289 TGTGCAAATTACTGAAGAACCAAC 58.413 37.500 0.00 0.00 0.00 3.77
452 473 4.982295 GTGCAAATTACTGAAGAACCAACC 59.018 41.667 0.00 0.00 0.00 3.77
453 474 4.892934 TGCAAATTACTGAAGAACCAACCT 59.107 37.500 0.00 0.00 0.00 3.50
454 475 6.016610 GTGCAAATTACTGAAGAACCAACCTA 60.017 38.462 0.00 0.00 0.00 3.08
455 476 6.206634 TGCAAATTACTGAAGAACCAACCTAG 59.793 38.462 0.00 0.00 0.00 3.02
456 477 6.349363 GCAAATTACTGAAGAACCAACCTAGG 60.349 42.308 7.41 7.41 0.00 3.02
457 478 6.697641 AATTACTGAAGAACCAACCTAGGA 57.302 37.500 17.98 0.00 0.00 2.94
458 479 6.697641 ATTACTGAAGAACCAACCTAGGAA 57.302 37.500 17.98 0.00 0.00 3.36
459 480 6.503560 TTACTGAAGAACCAACCTAGGAAA 57.496 37.500 17.98 0.00 0.00 3.13
460 481 5.382664 ACTGAAGAACCAACCTAGGAAAA 57.617 39.130 17.98 0.00 0.00 2.29
461 482 5.131067 ACTGAAGAACCAACCTAGGAAAAC 58.869 41.667 17.98 1.70 0.00 2.43
462 483 4.131596 TGAAGAACCAACCTAGGAAAACG 58.868 43.478 17.98 0.05 0.00 3.60
463 484 2.501261 AGAACCAACCTAGGAAAACGC 58.499 47.619 17.98 0.39 0.00 4.84
464 485 2.158726 AGAACCAACCTAGGAAAACGCA 60.159 45.455 17.98 0.00 0.00 5.24
465 486 2.351706 ACCAACCTAGGAAAACGCAA 57.648 45.000 17.98 0.00 0.00 4.85
466 487 2.657143 ACCAACCTAGGAAAACGCAAA 58.343 42.857 17.98 0.00 0.00 3.68
467 488 2.621526 ACCAACCTAGGAAAACGCAAAG 59.378 45.455 17.98 0.00 0.00 2.77
468 489 2.030274 CCAACCTAGGAAAACGCAAAGG 60.030 50.000 17.98 0.00 0.00 3.11
469 490 1.244816 ACCTAGGAAAACGCAAAGGC 58.755 50.000 17.98 0.00 0.00 4.35
470 491 1.243902 CCTAGGAAAACGCAAAGGCA 58.756 50.000 1.05 0.00 41.24 4.75
471 492 1.068541 CCTAGGAAAACGCAAAGGCAC 60.069 52.381 1.05 0.00 41.24 5.01
472 493 1.606668 CTAGGAAAACGCAAAGGCACA 59.393 47.619 0.00 0.00 41.24 4.57
473 494 0.385390 AGGAAAACGCAAAGGCACAG 59.615 50.000 0.00 0.00 41.24 3.66
474 495 0.102300 GGAAAACGCAAAGGCACAGT 59.898 50.000 0.00 0.00 41.24 3.55
475 496 1.199624 GAAAACGCAAAGGCACAGTG 58.800 50.000 0.00 0.00 41.24 3.66
476 497 0.530288 AAAACGCAAAGGCACAGTGT 59.470 45.000 1.61 0.00 41.24 3.55
477 498 0.100503 AAACGCAAAGGCACAGTGTC 59.899 50.000 0.00 0.00 41.24 3.67
478 499 0.748005 AACGCAAAGGCACAGTGTCT 60.748 50.000 0.31 0.31 41.24 3.41
479 500 1.160329 ACGCAAAGGCACAGTGTCTC 61.160 55.000 8.48 0.00 41.24 3.36
480 501 1.159713 CGCAAAGGCACAGTGTCTCA 61.160 55.000 8.48 0.00 41.24 3.27
481 502 0.308993 GCAAAGGCACAGTGTCTCAC 59.691 55.000 8.48 0.00 40.72 3.51
482 503 1.959042 CAAAGGCACAGTGTCTCACT 58.041 50.000 8.48 0.00 46.51 3.41
494 515 5.411831 AGTGTCTCACTGCATAGATGAAA 57.588 39.130 1.44 0.00 43.63 2.69
495 516 5.417811 AGTGTCTCACTGCATAGATGAAAG 58.582 41.667 1.44 0.00 43.63 2.62
496 517 5.186603 AGTGTCTCACTGCATAGATGAAAGA 59.813 40.000 1.44 0.00 43.63 2.52
497 518 5.871524 GTGTCTCACTGCATAGATGAAAGAA 59.128 40.000 0.00 0.00 0.00 2.52
498 519 6.035866 GTGTCTCACTGCATAGATGAAAGAAG 59.964 42.308 0.00 0.00 0.00 2.85
499 520 6.071165 TGTCTCACTGCATAGATGAAAGAAGA 60.071 38.462 0.00 0.00 0.00 2.87
500 521 6.476380 GTCTCACTGCATAGATGAAAGAAGAG 59.524 42.308 0.00 4.41 0.00 2.85
501 522 6.154192 TCTCACTGCATAGATGAAAGAAGAGT 59.846 38.462 0.00 0.00 0.00 3.24
502 523 6.705302 TCACTGCATAGATGAAAGAAGAGTT 58.295 36.000 0.00 0.00 0.00 3.01
503 524 7.164122 TCACTGCATAGATGAAAGAAGAGTTT 58.836 34.615 0.00 0.00 0.00 2.66
504 525 7.118825 TCACTGCATAGATGAAAGAAGAGTTTG 59.881 37.037 0.00 0.00 0.00 2.93
505 526 6.939163 ACTGCATAGATGAAAGAAGAGTTTGT 59.061 34.615 0.00 0.00 0.00 2.83
506 527 8.097038 ACTGCATAGATGAAAGAAGAGTTTGTA 58.903 33.333 0.00 0.00 0.00 2.41
507 528 8.256611 TGCATAGATGAAAGAAGAGTTTGTAC 57.743 34.615 0.00 0.00 0.00 2.90
508 529 7.877612 TGCATAGATGAAAGAAGAGTTTGTACA 59.122 33.333 0.00 0.00 0.00 2.90
509 530 8.721478 GCATAGATGAAAGAAGAGTTTGTACAA 58.279 33.333 3.59 3.59 0.00 2.41
511 532 7.195839 AGATGAAAGAAGAGTTTGTACAAGC 57.804 36.000 14.01 14.01 0.00 4.01
512 533 5.751243 TGAAAGAAGAGTTTGTACAAGCC 57.249 39.130 17.64 10.07 0.00 4.35
513 534 4.578928 TGAAAGAAGAGTTTGTACAAGCCC 59.421 41.667 17.64 7.33 0.00 5.19
514 535 4.439253 AAGAAGAGTTTGTACAAGCCCT 57.561 40.909 17.64 9.62 0.00 5.19
515 536 5.562298 AAGAAGAGTTTGTACAAGCCCTA 57.438 39.130 17.64 0.00 0.00 3.53
516 537 5.562298 AGAAGAGTTTGTACAAGCCCTAA 57.438 39.130 17.64 0.00 0.00 2.69
517 538 5.552178 AGAAGAGTTTGTACAAGCCCTAAG 58.448 41.667 17.64 0.00 0.00 2.18
518 539 5.307196 AGAAGAGTTTGTACAAGCCCTAAGA 59.693 40.000 17.64 0.00 0.00 2.10
519 540 5.562298 AGAGTTTGTACAAGCCCTAAGAA 57.438 39.130 17.64 0.00 0.00 2.52
520 541 5.552178 AGAGTTTGTACAAGCCCTAAGAAG 58.448 41.667 17.64 0.00 0.00 2.85
521 542 4.652822 AGTTTGTACAAGCCCTAAGAAGG 58.347 43.478 17.64 0.00 43.25 3.46
529 550 4.934989 CCTAAGAAGGGCGACACC 57.065 61.111 0.00 0.00 39.48 4.16
530 551 2.287829 CCTAAGAAGGGCGACACCT 58.712 57.895 0.00 0.00 44.56 4.00
531 552 0.108138 CCTAAGAAGGGCGACACCTG 60.108 60.000 0.00 0.00 40.87 4.00
532 553 0.108138 CTAAGAAGGGCGACACCTGG 60.108 60.000 0.00 0.00 40.87 4.45
533 554 0.834687 TAAGAAGGGCGACACCTGGT 60.835 55.000 0.00 0.00 40.87 4.00
534 555 2.358737 GAAGGGCGACACCTGGTG 60.359 66.667 24.80 24.80 40.87 4.17
535 556 2.847234 AAGGGCGACACCTGGTGA 60.847 61.111 32.30 0.00 40.87 4.02
536 557 2.185310 GAAGGGCGACACCTGGTGAT 62.185 60.000 32.30 16.71 40.87 3.06
537 558 1.779061 AAGGGCGACACCTGGTGATT 61.779 55.000 32.30 11.95 40.87 2.57
538 559 0.907704 AGGGCGACACCTGGTGATTA 60.908 55.000 32.30 0.00 40.04 1.75
539 560 0.743345 GGGCGACACCTGGTGATTAC 60.743 60.000 32.30 18.17 39.10 1.89
540 561 0.036765 GGCGACACCTGGTGATTACA 60.037 55.000 32.30 0.00 36.96 2.41
541 562 1.609580 GGCGACACCTGGTGATTACAA 60.610 52.381 32.30 0.00 36.96 2.41
542 563 1.463444 GCGACACCTGGTGATTACAAC 59.537 52.381 32.30 10.67 36.96 3.32
543 564 2.761559 CGACACCTGGTGATTACAACA 58.238 47.619 32.30 0.00 41.79 3.33
544 565 2.478894 CGACACCTGGTGATTACAACAC 59.521 50.000 32.30 10.52 38.94 3.32
545 566 2.478894 GACACCTGGTGATTACAACACG 59.521 50.000 32.30 2.24 38.94 4.49
546 567 2.103432 ACACCTGGTGATTACAACACGA 59.897 45.455 32.30 0.00 38.94 4.35
547 568 2.478894 CACCTGGTGATTACAACACGAC 59.521 50.000 22.33 0.00 38.94 4.34
548 569 1.724623 CCTGGTGATTACAACACGACG 59.275 52.381 0.00 0.00 38.94 5.12
549 570 1.126113 CTGGTGATTACAACACGACGC 59.874 52.381 0.00 0.00 38.94 5.19
550 571 0.441145 GGTGATTACAACACGACGCC 59.559 55.000 0.00 0.00 38.90 5.68
551 572 1.425412 GTGATTACAACACGACGCCT 58.575 50.000 0.00 0.00 0.00 5.52
552 573 1.389106 GTGATTACAACACGACGCCTC 59.611 52.381 0.00 0.00 0.00 4.70
553 574 1.271379 TGATTACAACACGACGCCTCT 59.729 47.619 0.00 0.00 0.00 3.69
554 575 2.488937 TGATTACAACACGACGCCTCTA 59.511 45.455 0.00 0.00 0.00 2.43
555 576 3.057386 TGATTACAACACGACGCCTCTAA 60.057 43.478 0.00 0.00 0.00 2.10
556 577 3.581024 TTACAACACGACGCCTCTAAT 57.419 42.857 0.00 0.00 0.00 1.73
557 578 1.992170 ACAACACGACGCCTCTAATC 58.008 50.000 0.00 0.00 0.00 1.75
558 579 0.914551 CAACACGACGCCTCTAATCG 59.085 55.000 0.00 0.00 41.60 3.34
559 580 0.801067 AACACGACGCCTCTAATCGC 60.801 55.000 0.00 0.00 39.47 4.58
560 581 1.064296 CACGACGCCTCTAATCGCT 59.936 57.895 0.00 0.00 39.47 4.93
561 582 0.306840 CACGACGCCTCTAATCGCTA 59.693 55.000 0.00 0.00 39.47 4.26
562 583 0.587285 ACGACGCCTCTAATCGCTAG 59.413 55.000 0.00 0.00 39.47 3.42
563 584 0.866427 CGACGCCTCTAATCGCTAGA 59.134 55.000 0.00 0.00 35.27 2.43
564 585 1.398705 CGACGCCTCTAATCGCTAGAC 60.399 57.143 0.00 0.00 32.91 2.59
565 586 1.602851 GACGCCTCTAATCGCTAGACA 59.397 52.381 0.00 0.00 32.91 3.41
566 587 1.334243 ACGCCTCTAATCGCTAGACAC 59.666 52.381 0.00 0.00 32.91 3.67
567 588 1.335142 CGCCTCTAATCGCTAGACACC 60.335 57.143 0.00 0.00 32.91 4.16
568 589 1.957877 GCCTCTAATCGCTAGACACCT 59.042 52.381 0.00 0.00 32.91 4.00
569 590 3.147629 GCCTCTAATCGCTAGACACCTA 58.852 50.000 0.00 0.00 32.91 3.08
570 591 3.058085 GCCTCTAATCGCTAGACACCTAC 60.058 52.174 0.00 0.00 32.91 3.18
571 592 4.391155 CCTCTAATCGCTAGACACCTACT 58.609 47.826 0.00 0.00 32.91 2.57
572 593 4.453136 CCTCTAATCGCTAGACACCTACTC 59.547 50.000 0.00 0.00 32.91 2.59
653 687 7.068103 ACATGGTCTATGATTAAATTGGCGAAA 59.932 33.333 2.78 0.00 39.21 3.46
654 688 7.397892 TGGTCTATGATTAAATTGGCGAAAA 57.602 32.000 0.00 0.00 0.00 2.29
680 721 8.186178 TCGAGCACTCTTATTCTTTCATTTAC 57.814 34.615 0.00 0.00 0.00 2.01
688 731 7.812648 TCTTATTCTTTCATTTACGTGTTGGG 58.187 34.615 0.00 0.00 0.00 4.12
702 750 1.071542 TGTTGGGCTCAAATCGACTCA 59.928 47.619 0.00 0.00 34.28 3.41
759 813 5.678583 CAGCCAGAGGAGATCTTTTATGAA 58.321 41.667 0.00 0.00 35.47 2.57
780 921 7.996465 TGAAAAACTATTTTGTATACGCACG 57.004 32.000 0.00 0.00 38.83 5.34
804 949 4.876679 TCAATGTTTTTGTCAGTACGTGGA 59.123 37.500 0.00 0.00 0.00 4.02
810 955 4.330944 TTTGTCAGTACGTGGACATCTT 57.669 40.909 16.68 0.00 43.01 2.40
816 963 6.544564 TGTCAGTACGTGGACATCTTATATGA 59.455 38.462 13.35 0.00 39.00 2.15
851 1000 5.092554 TGCCAATCATTGATTCTGCAAAT 57.907 34.783 21.85 0.00 35.41 2.32
856 1005 7.279313 GCCAATCATTGATTCTGCAAATTACTT 59.721 33.333 18.69 0.00 31.35 2.24
857 1013 8.814235 CCAATCATTGATTCTGCAAATTACTTC 58.186 33.333 8.95 0.00 28.87 3.01
901 1060 7.093156 TGGTTATCTGAGATCTGAGTTTCACAT 60.093 37.037 9.15 0.00 0.00 3.21
908 1067 5.776744 AGATCTGAGTTTCACATTTTTGGC 58.223 37.500 0.00 0.00 0.00 4.52
1024 1185 4.159135 TGGACCTTCGAGAAAGTATGGTAC 59.841 45.833 0.00 0.00 32.69 3.34
1157 7094 0.608035 ATTGGAAAAGGCGGCTTCGA 60.608 50.000 25.70 12.75 35.61 3.71
1286 7223 8.564574 TGAAATCAACCACAAGAATGTAGTTAC 58.435 33.333 0.00 0.00 38.99 2.50
1528 8551 8.752766 ATTAGATGACAACTTCAATGCAAAAG 57.247 30.769 0.00 0.00 37.92 2.27
1610 8633 6.221659 GTGTAATAGGGAGCATAGGTTACAC 58.778 44.000 8.99 8.99 41.40 2.90
1646 8669 3.094062 GCAGCGGGCATCTCACCTA 62.094 63.158 0.00 0.00 43.97 3.08
1724 8747 1.270785 GGCAACAACAAGAAATGGGGG 60.271 52.381 0.00 0.00 0.00 5.40
1761 8784 0.040067 GTTTCACCCAAGCTCTTGCG 60.040 55.000 4.17 0.00 45.42 4.85
1785 8808 2.317594 AGGGAAGAGAAGGGTGAGAGAT 59.682 50.000 0.00 0.00 0.00 2.75
1895 8918 1.271102 GGATAGACGCCCTGAGATGAC 59.729 57.143 0.00 0.00 0.00 3.06
1899 8922 0.179124 GACGCCCTGAGATGACAGAC 60.179 60.000 0.00 0.00 39.94 3.51
1992 9015 1.073897 GTGGAGGAACAAGCCAGCT 59.926 57.895 0.00 0.00 31.18 4.24
2005 9028 0.523519 GCCAGCTGCTCTAAACAACC 59.476 55.000 8.66 0.00 36.87 3.77
2006 9029 1.896220 CCAGCTGCTCTAAACAACCA 58.104 50.000 8.66 0.00 0.00 3.67
2048 9071 1.606224 GCAACAATCTTTGCCACCCAG 60.606 52.381 0.00 0.00 45.22 4.45
2106 9129 5.985781 TCTGCGACAAGAAACTTTGATAAC 58.014 37.500 0.00 0.00 0.00 1.89
2116 9139 7.497925 AGAAACTTTGATAACTCACACCTTC 57.502 36.000 0.00 0.00 0.00 3.46
2134 9157 4.962155 CCTTCTTGGTCAGGGTATACATC 58.038 47.826 5.01 0.00 0.00 3.06
2158 9181 8.289939 TCGTAGAGTTTACTATGGAGTGATTT 57.710 34.615 0.00 0.00 36.28 2.17
2166 9189 4.315993 ACTATGGAGTGATTTATGGGGGT 58.684 43.478 0.00 0.00 33.41 4.95
2167 9190 3.884037 ATGGAGTGATTTATGGGGGTC 57.116 47.619 0.00 0.00 0.00 4.46
2182 9205 1.903404 GGTCCAACCAAGGTGGCTG 60.903 63.158 0.00 0.00 42.67 4.85
2202 9225 0.730265 TCAAACGTGGCAGTGTTGAC 59.270 50.000 5.88 0.00 0.00 3.18
2203 9226 0.732571 CAAACGTGGCAGTGTTGACT 59.267 50.000 5.88 0.00 31.73 3.41
2205 9228 2.543777 AACGTGGCAGTGTTGACTAT 57.456 45.000 4.40 0.00 31.73 2.12
2210 9233 2.679837 GTGGCAGTGTTGACTATGATGG 59.320 50.000 0.00 0.00 31.73 3.51
2211 9234 2.571202 TGGCAGTGTTGACTATGATGGA 59.429 45.455 0.00 0.00 31.73 3.41
2215 9238 4.093998 GCAGTGTTGACTATGATGGAAGTG 59.906 45.833 0.00 0.00 0.00 3.16
2217 9240 5.349817 CAGTGTTGACTATGATGGAAGTGAC 59.650 44.000 0.00 0.00 0.00 3.67
2253 9276 1.091771 CGATGATGGCAAAGCTCCGT 61.092 55.000 0.00 0.00 0.00 4.69
2257 9280 1.970917 GATGGCAAAGCTCCGTCACG 61.971 60.000 7.17 0.00 39.01 4.35
2398 9421 0.685097 TCTTAGTTGGAGGCAGCGTT 59.315 50.000 0.00 0.00 0.00 4.84
2403 9426 1.079503 GTTGGAGGCAGCGTTTAGAG 58.920 55.000 0.00 0.00 0.00 2.43
2404 9427 0.973632 TTGGAGGCAGCGTTTAGAGA 59.026 50.000 0.00 0.00 0.00 3.10
2406 9429 1.555075 TGGAGGCAGCGTTTAGAGATT 59.445 47.619 0.00 0.00 0.00 2.40
2412 9435 3.312421 GGCAGCGTTTAGAGATTTGCATA 59.688 43.478 0.00 0.00 0.00 3.14
2452 9475 3.864921 GCATTACCTTCACGAGTGTTCCT 60.865 47.826 2.97 0.00 0.00 3.36
2460 9483 0.613777 ACGAGTGTTCCTTCATCCCC 59.386 55.000 0.00 0.00 0.00 4.81
2464 9487 3.701664 GAGTGTTCCTTCATCCCCAATT 58.298 45.455 0.00 0.00 0.00 2.32
2490 9513 1.135774 TCGACGACGAACATTCTCCTG 60.136 52.381 7.68 0.00 45.74 3.86
2507 9530 2.092753 TCCTGGATGAGAGATTGGTTGC 60.093 50.000 0.00 0.00 0.00 4.17
2508 9531 1.938577 CTGGATGAGAGATTGGTTGCG 59.061 52.381 0.00 0.00 0.00 4.85
2518 9541 1.818674 GATTGGTTGCGAAGGTTCCAT 59.181 47.619 0.00 0.00 0.00 3.41
2530 9553 1.276421 AGGTTCCATGTGAAGTCTCGG 59.724 52.381 0.00 0.00 32.37 4.63
2538 9561 2.125512 GAAGTCTCGGTGCCGCAT 60.126 61.111 5.64 0.00 39.59 4.73
2539 9562 1.141019 GAAGTCTCGGTGCCGCATA 59.859 57.895 5.64 0.00 39.59 3.14
2542 9565 0.249489 AGTCTCGGTGCCGCATAATC 60.249 55.000 5.64 0.00 39.59 1.75
2543 9566 0.249489 GTCTCGGTGCCGCATAATCT 60.249 55.000 5.64 0.00 39.59 2.40
2548 9571 0.657840 GGTGCCGCATAATCTCACAC 59.342 55.000 0.00 0.00 0.00 3.82
2553 9576 2.804647 CCGCATAATCTCACACGTACA 58.195 47.619 0.00 0.00 0.00 2.90
2556 9579 4.979815 CCGCATAATCTCACACGTACAATA 59.020 41.667 0.00 0.00 0.00 1.90
2560 9583 9.498307 CGCATAATCTCACACGTACAATATATA 57.502 33.333 0.00 0.00 0.00 0.86
2590 9628 1.822990 TCGATCCTCAGTTTTACCGCT 59.177 47.619 0.00 0.00 0.00 5.52
2593 9631 3.676324 CGATCCTCAGTTTTACCGCTCTT 60.676 47.826 0.00 0.00 0.00 2.85
2595 9633 1.464997 CCTCAGTTTTACCGCTCTTGC 59.535 52.381 0.00 0.00 0.00 4.01
2596 9634 2.143122 CTCAGTTTTACCGCTCTTGCA 58.857 47.619 0.00 0.00 39.64 4.08
2614 9652 3.149196 TGCAAACTCACAGAGAAATCCC 58.851 45.455 0.31 0.00 33.32 3.85
2625 9663 7.453393 TCACAGAGAAATCCCATGTATATTCC 58.547 38.462 0.00 0.00 0.00 3.01
2640 9678 6.477253 TGTATATTCCTTTGGTGTTGTGCTA 58.523 36.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.777896 TGGCTGTTAGGATAGAGTTCTGTT 59.222 41.667 0.00 0.00 0.00 3.16
1 2 4.353777 TGGCTGTTAGGATAGAGTTCTGT 58.646 43.478 0.00 0.00 0.00 3.41
2 3 4.404073 ACTGGCTGTTAGGATAGAGTTCTG 59.596 45.833 0.00 0.00 0.00 3.02
6 7 3.052490 AGGACTGGCTGTTAGGATAGAGT 60.052 47.826 0.00 0.00 0.00 3.24
7 8 3.571590 AGGACTGGCTGTTAGGATAGAG 58.428 50.000 0.00 0.00 0.00 2.43
8 9 3.689872 AGGACTGGCTGTTAGGATAGA 57.310 47.619 0.00 0.00 0.00 1.98
9 10 3.706594 TCAAGGACTGGCTGTTAGGATAG 59.293 47.826 0.00 0.00 0.00 2.08
10 11 3.719871 TCAAGGACTGGCTGTTAGGATA 58.280 45.455 0.00 0.00 0.00 2.59
11 12 2.551270 TCAAGGACTGGCTGTTAGGAT 58.449 47.619 0.00 0.00 0.00 3.24
12 13 2.024176 TCAAGGACTGGCTGTTAGGA 57.976 50.000 0.00 0.00 0.00 2.94
13 14 2.636830 CATCAAGGACTGGCTGTTAGG 58.363 52.381 0.00 0.00 0.00 2.69
14 15 2.026822 ACCATCAAGGACTGGCTGTTAG 60.027 50.000 0.00 0.00 41.22 2.34
15 16 1.985159 ACCATCAAGGACTGGCTGTTA 59.015 47.619 0.00 0.00 41.22 2.41
16 17 0.773644 ACCATCAAGGACTGGCTGTT 59.226 50.000 0.00 0.00 41.22 3.16
17 18 0.326264 GACCATCAAGGACTGGCTGT 59.674 55.000 0.00 0.00 41.22 4.40
18 19 0.393537 GGACCATCAAGGACTGGCTG 60.394 60.000 0.00 0.00 41.22 4.85
19 20 0.842030 TGGACCATCAAGGACTGGCT 60.842 55.000 0.00 0.00 41.22 4.75
20 21 0.393537 CTGGACCATCAAGGACTGGC 60.394 60.000 0.00 0.00 41.22 4.85
21 22 0.254178 CCTGGACCATCAAGGACTGG 59.746 60.000 0.00 0.00 41.22 4.00
22 23 1.065854 GTCCTGGACCATCAAGGACTG 60.066 57.143 20.84 0.00 43.98 3.51
23 24 1.280457 GTCCTGGACCATCAAGGACT 58.720 55.000 20.84 0.00 43.98 3.85
24 25 1.280457 AGTCCTGGACCATCAAGGAC 58.720 55.000 22.81 20.64 46.75 3.85
25 26 2.044793 AAGTCCTGGACCATCAAGGA 57.955 50.000 22.81 0.00 41.22 3.36
26 27 2.887151 AAAGTCCTGGACCATCAAGG 57.113 50.000 22.81 0.00 45.67 3.61
27 28 4.455606 GGATAAAGTCCTGGACCATCAAG 58.544 47.826 22.81 0.00 44.16 3.02
28 29 4.503714 GGATAAAGTCCTGGACCATCAA 57.496 45.455 22.81 5.42 44.16 2.57
40 41 4.081087 TGTGGCAGTTAGGAGGATAAAGTC 60.081 45.833 0.00 0.00 0.00 3.01
41 42 3.844211 TGTGGCAGTTAGGAGGATAAAGT 59.156 43.478 0.00 0.00 0.00 2.66
42 43 4.487714 TGTGGCAGTTAGGAGGATAAAG 57.512 45.455 0.00 0.00 0.00 1.85
43 44 4.324254 CCTTGTGGCAGTTAGGAGGATAAA 60.324 45.833 3.95 0.00 0.00 1.40
44 45 3.199946 CCTTGTGGCAGTTAGGAGGATAA 59.800 47.826 3.95 0.00 0.00 1.75
45 46 2.771943 CCTTGTGGCAGTTAGGAGGATA 59.228 50.000 3.95 0.00 0.00 2.59
46 47 1.561542 CCTTGTGGCAGTTAGGAGGAT 59.438 52.381 3.95 0.00 0.00 3.24
47 48 0.984230 CCTTGTGGCAGTTAGGAGGA 59.016 55.000 3.95 0.00 0.00 3.71
48 49 0.984230 TCCTTGTGGCAGTTAGGAGG 59.016 55.000 7.81 1.01 33.08 4.30
49 50 1.339151 GGTCCTTGTGGCAGTTAGGAG 60.339 57.143 11.30 0.00 37.46 3.69
50 51 0.690762 GGTCCTTGTGGCAGTTAGGA 59.309 55.000 7.81 7.81 34.50 2.94
51 52 0.400213 TGGTCCTTGTGGCAGTTAGG 59.600 55.000 0.00 0.00 0.00 2.69
52 53 2.086869 CATGGTCCTTGTGGCAGTTAG 58.913 52.381 0.00 0.00 0.00 2.34
53 54 1.423541 ACATGGTCCTTGTGGCAGTTA 59.576 47.619 9.54 0.00 0.00 2.24
54 55 0.185901 ACATGGTCCTTGTGGCAGTT 59.814 50.000 9.54 0.00 0.00 3.16
55 56 0.538057 CACATGGTCCTTGTGGCAGT 60.538 55.000 24.03 0.00 40.60 4.40
56 57 1.870055 GCACATGGTCCTTGTGGCAG 61.870 60.000 29.47 12.39 43.69 4.85
57 58 1.902918 GCACATGGTCCTTGTGGCA 60.903 57.895 29.47 0.00 43.69 4.92
58 59 1.604593 AGCACATGGTCCTTGTGGC 60.605 57.895 29.47 22.98 43.69 5.01
59 60 1.870055 GCAGCACATGGTCCTTGTGG 61.870 60.000 29.47 19.17 43.69 4.17
60 61 1.174078 TGCAGCACATGGTCCTTGTG 61.174 55.000 26.31 26.31 45.74 3.33
61 62 0.892358 CTGCAGCACATGGTCCTTGT 60.892 55.000 0.00 4.56 0.00 3.16
62 63 1.880894 CTGCAGCACATGGTCCTTG 59.119 57.895 0.00 3.21 0.00 3.61
63 64 1.975407 GCTGCAGCACATGGTCCTT 60.975 57.895 33.36 0.00 41.59 3.36
64 65 2.360852 GCTGCAGCACATGGTCCT 60.361 61.111 33.36 0.00 41.59 3.85
65 66 3.446570 GGCTGCAGCACATGGTCC 61.447 66.667 37.63 15.84 44.36 4.46
66 67 3.446570 GGGCTGCAGCACATGGTC 61.447 66.667 37.63 19.48 45.57 4.02
72 73 3.677648 CTTGTGGGGCTGCAGCAC 61.678 66.667 37.63 35.59 45.53 4.40
73 74 4.980702 CCTTGTGGGGCTGCAGCA 62.981 66.667 37.63 17.28 44.36 4.41
74 75 4.666253 TCCTTGTGGGGCTGCAGC 62.666 66.667 30.88 30.88 41.14 5.25
75 76 2.674380 GTCCTTGTGGGGCTGCAG 60.674 66.667 10.11 10.11 36.61 4.41
76 77 4.284550 GGTCCTTGTGGGGCTGCA 62.285 66.667 0.50 0.00 40.18 4.41
78 79 1.915078 CTAGGGTCCTTGTGGGGCTG 61.915 65.000 0.00 0.00 40.18 4.85
79 80 1.616628 CTAGGGTCCTTGTGGGGCT 60.617 63.158 0.00 0.00 40.18 5.19
80 81 0.619543 TACTAGGGTCCTTGTGGGGC 60.620 60.000 13.01 0.00 39.42 5.80
81 82 1.201424 GTACTAGGGTCCTTGTGGGG 58.799 60.000 13.01 0.00 34.25 4.96
82 83 1.553704 GTGTACTAGGGTCCTTGTGGG 59.446 57.143 13.01 0.00 34.25 4.61
83 84 2.233922 CTGTGTACTAGGGTCCTTGTGG 59.766 54.545 13.01 0.00 34.25 4.17
84 85 3.056749 GTCTGTGTACTAGGGTCCTTGTG 60.057 52.174 13.01 0.00 34.25 3.33
85 86 3.163467 GTCTGTGTACTAGGGTCCTTGT 58.837 50.000 8.92 8.92 36.18 3.16
86 87 3.432378 AGTCTGTGTACTAGGGTCCTTG 58.568 50.000 0.00 0.00 0.00 3.61
87 88 3.829728 AGTCTGTGTACTAGGGTCCTT 57.170 47.619 0.00 0.00 0.00 3.36
88 89 3.829728 AAGTCTGTGTACTAGGGTCCT 57.170 47.619 0.00 0.00 0.00 3.85
89 90 4.583907 GGATAAGTCTGTGTACTAGGGTCC 59.416 50.000 0.00 0.00 0.00 4.46
90 91 5.198965 TGGATAAGTCTGTGTACTAGGGTC 58.801 45.833 0.00 0.00 0.00 4.46
91 92 5.202746 TGGATAAGTCTGTGTACTAGGGT 57.797 43.478 0.00 0.00 0.00 4.34
92 93 5.833667 TGATGGATAAGTCTGTGTACTAGGG 59.166 44.000 0.00 0.00 0.00 3.53
93 94 6.547880 ACTGATGGATAAGTCTGTGTACTAGG 59.452 42.308 0.00 0.00 0.00 3.02
94 95 7.575414 ACTGATGGATAAGTCTGTGTACTAG 57.425 40.000 0.00 0.00 0.00 2.57
95 96 7.630728 GCAACTGATGGATAAGTCTGTGTACTA 60.631 40.741 0.00 0.00 0.00 1.82
96 97 6.634805 CAACTGATGGATAAGTCTGTGTACT 58.365 40.000 0.00 0.00 0.00 2.73
97 98 5.292101 GCAACTGATGGATAAGTCTGTGTAC 59.708 44.000 0.00 0.00 0.00 2.90
98 99 5.187772 AGCAACTGATGGATAAGTCTGTGTA 59.812 40.000 0.00 0.00 0.00 2.90
99 100 4.019860 AGCAACTGATGGATAAGTCTGTGT 60.020 41.667 0.00 0.00 0.00 3.72
100 101 4.511527 AGCAACTGATGGATAAGTCTGTG 58.488 43.478 0.00 0.00 0.00 3.66
101 102 4.833478 AGCAACTGATGGATAAGTCTGT 57.167 40.909 0.00 0.00 0.00 3.41
102 103 5.181009 TGAAGCAACTGATGGATAAGTCTG 58.819 41.667 0.00 0.00 0.00 3.51
103 104 5.046014 ACTGAAGCAACTGATGGATAAGTCT 60.046 40.000 0.00 0.00 0.00 3.24
104 105 5.064452 CACTGAAGCAACTGATGGATAAGTC 59.936 44.000 0.00 0.00 0.00 3.01
105 106 4.940046 CACTGAAGCAACTGATGGATAAGT 59.060 41.667 0.00 0.00 0.00 2.24
106 107 4.334759 CCACTGAAGCAACTGATGGATAAG 59.665 45.833 0.00 0.00 0.00 1.73
107 108 4.264253 CCACTGAAGCAACTGATGGATAA 58.736 43.478 0.00 0.00 0.00 1.75
108 109 3.370846 CCCACTGAAGCAACTGATGGATA 60.371 47.826 0.00 0.00 0.00 2.59
109 110 2.619849 CCCACTGAAGCAACTGATGGAT 60.620 50.000 0.00 0.00 0.00 3.41
110 111 1.271543 CCCACTGAAGCAACTGATGGA 60.272 52.381 0.00 0.00 0.00 3.41
111 112 1.171308 CCCACTGAAGCAACTGATGG 58.829 55.000 0.00 0.00 0.00 3.51
112 113 1.901591 ACCCACTGAAGCAACTGATG 58.098 50.000 0.00 0.00 0.00 3.07
113 114 2.616510 GCTACCCACTGAAGCAACTGAT 60.617 50.000 0.00 0.00 36.26 2.90
114 115 1.270839 GCTACCCACTGAAGCAACTGA 60.271 52.381 0.00 0.00 36.26 3.41
115 116 1.160137 GCTACCCACTGAAGCAACTG 58.840 55.000 0.00 0.00 36.26 3.16
116 117 1.059913 AGCTACCCACTGAAGCAACT 58.940 50.000 0.00 0.00 38.75 3.16
117 118 1.897560 AAGCTACCCACTGAAGCAAC 58.102 50.000 0.00 0.00 38.75 4.17
120 121 1.271379 TGGAAAGCTACCCACTGAAGC 60.271 52.381 3.10 0.00 36.48 3.86
130 131 1.953686 TGCAAACCTGTGGAAAGCTAC 59.046 47.619 0.00 0.00 0.00 3.58
134 135 4.270808 GTCAAAATGCAAACCTGTGGAAAG 59.729 41.667 0.00 0.00 0.00 2.62
139 140 4.211794 GGAATGTCAAAATGCAAACCTGTG 59.788 41.667 0.00 0.00 0.00 3.66
155 156 6.238593 GCATAGAACCAAAGATCTGGAATGTC 60.239 42.308 7.95 0.00 38.96 3.06
156 157 5.591877 GCATAGAACCAAAGATCTGGAATGT 59.408 40.000 7.95 0.00 38.96 2.71
161 163 5.128205 TGATGCATAGAACCAAAGATCTGG 58.872 41.667 0.00 0.00 42.68 3.86
162 164 6.688637 TTGATGCATAGAACCAAAGATCTG 57.311 37.500 0.00 0.00 0.00 2.90
164 166 6.921857 CCAATTGATGCATAGAACCAAAGATC 59.078 38.462 7.12 0.00 0.00 2.75
170 172 5.105392 GGAAACCAATTGATGCATAGAACCA 60.105 40.000 7.12 0.00 0.00 3.67
178 180 2.299582 CAGGTGGAAACCAATTGATGCA 59.700 45.455 7.12 1.51 34.18 3.96
179 181 2.299867 ACAGGTGGAAACCAATTGATGC 59.700 45.455 7.12 0.00 34.18 3.91
181 183 3.165071 GGACAGGTGGAAACCAATTGAT 58.835 45.455 7.12 0.00 34.18 2.57
185 187 1.823250 GCAGGACAGGTGGAAACCAAT 60.823 52.381 0.00 0.00 34.18 3.16
186 188 0.467290 GCAGGACAGGTGGAAACCAA 60.467 55.000 0.00 0.00 34.18 3.67
188 190 0.690762 TAGCAGGACAGGTGGAAACC 59.309 55.000 0.00 0.00 0.00 3.27
189 191 1.348036 ACTAGCAGGACAGGTGGAAAC 59.652 52.381 0.00 0.00 0.00 2.78
193 195 0.687354 AACACTAGCAGGACAGGTGG 59.313 55.000 0.00 0.00 32.88 4.61
195 197 2.766828 GGATAACACTAGCAGGACAGGT 59.233 50.000 0.00 0.00 0.00 4.00
197 199 4.679373 ATGGATAACACTAGCAGGACAG 57.321 45.455 0.00 0.00 0.00 3.51
198 200 4.716784 AGAATGGATAACACTAGCAGGACA 59.283 41.667 0.00 0.00 0.00 4.02
199 201 5.283457 AGAATGGATAACACTAGCAGGAC 57.717 43.478 0.00 0.00 0.00 3.85
201 203 4.503991 GGGAGAATGGATAACACTAGCAGG 60.504 50.000 0.00 0.00 0.00 4.85
202 204 4.346418 AGGGAGAATGGATAACACTAGCAG 59.654 45.833 0.00 0.00 0.00 4.24
205 207 5.363868 TGACAGGGAGAATGGATAACACTAG 59.636 44.000 0.00 0.00 0.00 2.57
206 208 5.277250 TGACAGGGAGAATGGATAACACTA 58.723 41.667 0.00 0.00 0.00 2.74
207 209 4.104086 TGACAGGGAGAATGGATAACACT 58.896 43.478 0.00 0.00 0.00 3.55
208 210 4.162320 TCTGACAGGGAGAATGGATAACAC 59.838 45.833 1.81 0.00 0.00 3.32
209 211 4.361783 TCTGACAGGGAGAATGGATAACA 58.638 43.478 1.81 0.00 0.00 2.41
210 212 5.359194 TTCTGACAGGGAGAATGGATAAC 57.641 43.478 1.81 0.00 0.00 1.89
211 213 5.630069 GCTTTCTGACAGGGAGAATGGATAA 60.630 44.000 1.81 0.00 29.60 1.75
212 214 4.141620 GCTTTCTGACAGGGAGAATGGATA 60.142 45.833 1.81 0.00 29.60 2.59
215 217 2.290514 TGCTTTCTGACAGGGAGAATGG 60.291 50.000 1.81 0.00 29.60 3.16
217 219 2.641815 AGTGCTTTCTGACAGGGAGAAT 59.358 45.455 1.81 0.00 29.60 2.40
220 222 2.149578 CAAGTGCTTTCTGACAGGGAG 58.850 52.381 1.81 2.34 0.00 4.30
224 226 2.032204 GCAGTCAAGTGCTTTCTGACAG 60.032 50.000 13.92 0.00 40.54 3.51
234 236 2.475200 AACGAAAAGCAGTCAAGTGC 57.525 45.000 1.46 1.46 44.35 4.40
235 237 3.108144 CCAAACGAAAAGCAGTCAAGTG 58.892 45.455 0.00 0.00 0.00 3.16
236 238 2.752903 ACCAAACGAAAAGCAGTCAAGT 59.247 40.909 0.00 0.00 0.00 3.16
237 239 3.420839 ACCAAACGAAAAGCAGTCAAG 57.579 42.857 0.00 0.00 0.00 3.02
238 240 3.859411 AACCAAACGAAAAGCAGTCAA 57.141 38.095 0.00 0.00 0.00 3.18
239 241 3.506810 CAAACCAAACGAAAAGCAGTCA 58.493 40.909 0.00 0.00 0.00 3.41
241 243 2.267426 GCAAACCAAACGAAAAGCAGT 58.733 42.857 0.00 0.00 0.00 4.40
242 244 2.029124 GTGCAAACCAAACGAAAAGCAG 59.971 45.455 0.00 0.00 0.00 4.24
244 246 1.326245 GGTGCAAACCAAACGAAAAGC 59.674 47.619 0.00 0.00 0.00 3.51
245 247 2.602660 CAGGTGCAAACCAAACGAAAAG 59.397 45.455 0.00 0.00 0.00 2.27
250 259 0.673437 ATCCAGGTGCAAACCAAACG 59.327 50.000 0.00 0.00 0.00 3.60
251 260 1.873486 GCATCCAGGTGCAAACCAAAC 60.873 52.381 0.00 0.00 44.43 2.93
280 289 1.078143 GCTTCAGGGTAGGCACTGG 60.078 63.158 0.00 0.00 45.89 4.00
283 292 1.222113 GGAGCTTCAGGGTAGGCAC 59.778 63.158 0.00 0.00 0.00 5.01
284 293 1.229496 TGGAGCTTCAGGGTAGGCA 60.229 57.895 0.00 0.00 0.00 4.75
292 301 3.673594 CGTGGTAGTAACTGGAGCTTCAG 60.674 52.174 21.11 21.11 40.40 3.02
297 306 0.459759 GCCGTGGTAGTAACTGGAGC 60.460 60.000 1.69 0.00 0.00 4.70
303 312 2.029649 TGAGTTCTGCCGTGGTAGTAAC 60.030 50.000 3.87 7.35 0.00 2.50
307 316 1.270094 TGTTGAGTTCTGCCGTGGTAG 60.270 52.381 0.00 0.00 0.00 3.18
331 340 8.448008 TGGGTAGGAGATAGCAAAATTAATCAT 58.552 33.333 0.00 0.00 33.31 2.45
333 342 7.719633 TGTGGGTAGGAGATAGCAAAATTAATC 59.280 37.037 0.00 0.00 33.31 1.75
346 355 2.024825 GCGAGACTGTGGGTAGGAGAT 61.025 57.143 0.00 0.00 0.00 2.75
349 358 1.681327 GGCGAGACTGTGGGTAGGA 60.681 63.158 0.00 0.00 0.00 2.94
356 365 1.831652 AAGGGAAGGGCGAGACTGTG 61.832 60.000 0.00 0.00 0.00 3.66
360 369 1.376037 CACAAGGGAAGGGCGAGAC 60.376 63.158 0.00 0.00 0.00 3.36
362 371 2.045926 CCACAAGGGAAGGGCGAG 60.046 66.667 0.00 0.00 40.01 5.03
372 381 1.974543 GGGAATTGCACCCACAAGG 59.025 57.895 6.00 0.00 46.05 3.61
379 388 1.851304 TCAATGGAGGGAATTGCACC 58.149 50.000 0.00 2.45 35.43 5.01
380 389 3.025978 TCATCAATGGAGGGAATTGCAC 58.974 45.455 0.00 0.00 35.43 4.57
381 390 3.385314 TCATCAATGGAGGGAATTGCA 57.615 42.857 0.00 0.00 35.43 4.08
382 391 3.703052 ACTTCATCAATGGAGGGAATTGC 59.297 43.478 3.40 0.00 37.74 3.56
384 393 4.017222 TGGACTTCATCAATGGAGGGAATT 60.017 41.667 3.40 0.00 37.74 2.17
385 394 3.528905 TGGACTTCATCAATGGAGGGAAT 59.471 43.478 3.40 0.00 37.74 3.01
386 395 2.918934 TGGACTTCATCAATGGAGGGAA 59.081 45.455 3.40 0.00 37.74 3.97
387 396 2.239654 GTGGACTTCATCAATGGAGGGA 59.760 50.000 3.40 0.00 37.74 4.20
388 397 2.648059 GTGGACTTCATCAATGGAGGG 58.352 52.381 3.40 0.00 37.74 4.30
389 398 2.025981 TGGTGGACTTCATCAATGGAGG 60.026 50.000 3.40 0.00 37.74 4.30
390 399 3.354948 TGGTGGACTTCATCAATGGAG 57.645 47.619 0.00 0.00 39.38 3.86
391 400 3.181435 TGTTGGTGGACTTCATCAATGGA 60.181 43.478 0.00 0.00 46.80 3.41
396 405 5.867903 AATTTTGTTGGTGGACTTCATCA 57.132 34.783 0.00 0.00 34.08 3.07
425 446 6.634805 TGGTTCTTCAGTAATTTGCACAAAA 58.365 32.000 0.00 0.00 33.56 2.44
440 461 4.131596 CGTTTTCCTAGGTTGGTTCTTCA 58.868 43.478 9.08 0.00 0.00 3.02
447 468 2.030274 CCTTTGCGTTTTCCTAGGTTGG 60.030 50.000 9.08 0.00 0.00 3.77
448 469 2.607038 GCCTTTGCGTTTTCCTAGGTTG 60.607 50.000 9.08 0.00 0.00 3.77
450 471 1.244816 GCCTTTGCGTTTTCCTAGGT 58.755 50.000 9.08 0.00 0.00 3.08
451 472 1.068541 GTGCCTTTGCGTTTTCCTAGG 60.069 52.381 0.82 0.82 41.78 3.02
452 473 1.606668 TGTGCCTTTGCGTTTTCCTAG 59.393 47.619 0.00 0.00 41.78 3.02
453 474 1.606668 CTGTGCCTTTGCGTTTTCCTA 59.393 47.619 0.00 0.00 41.78 2.94
454 475 0.385390 CTGTGCCTTTGCGTTTTCCT 59.615 50.000 0.00 0.00 41.78 3.36
455 476 0.102300 ACTGTGCCTTTGCGTTTTCC 59.898 50.000 0.00 0.00 41.78 3.13
456 477 1.199624 CACTGTGCCTTTGCGTTTTC 58.800 50.000 0.00 0.00 41.78 2.29
457 478 0.530288 ACACTGTGCCTTTGCGTTTT 59.470 45.000 7.90 0.00 41.78 2.43
458 479 0.100503 GACACTGTGCCTTTGCGTTT 59.899 50.000 7.90 0.00 41.78 3.60
459 480 0.748005 AGACACTGTGCCTTTGCGTT 60.748 50.000 7.90 0.00 41.78 4.84
460 481 1.153168 AGACACTGTGCCTTTGCGT 60.153 52.632 7.90 0.00 41.78 5.24
461 482 1.159713 TGAGACACTGTGCCTTTGCG 61.160 55.000 7.90 0.00 41.78 4.85
462 483 0.308993 GTGAGACACTGTGCCTTTGC 59.691 55.000 7.90 0.00 38.26 3.68
463 484 1.959042 AGTGAGACACTGTGCCTTTG 58.041 50.000 7.90 0.00 43.63 2.77
472 493 5.186603 TCTTTCATCTATGCAGTGAGACACT 59.813 40.000 0.00 0.00 46.51 3.55
473 494 5.414360 TCTTTCATCTATGCAGTGAGACAC 58.586 41.667 0.00 0.00 34.10 3.67
474 495 5.665916 TCTTTCATCTATGCAGTGAGACA 57.334 39.130 0.00 0.00 0.00 3.41
475 496 6.336566 TCTTCTTTCATCTATGCAGTGAGAC 58.663 40.000 0.00 0.00 0.00 3.36
476 497 6.154192 ACTCTTCTTTCATCTATGCAGTGAGA 59.846 38.462 0.00 0.00 0.00 3.27
477 498 6.339730 ACTCTTCTTTCATCTATGCAGTGAG 58.660 40.000 0.00 0.00 0.00 3.51
478 499 6.291648 ACTCTTCTTTCATCTATGCAGTGA 57.708 37.500 0.00 0.00 0.00 3.41
479 500 6.981762 AACTCTTCTTTCATCTATGCAGTG 57.018 37.500 0.00 0.00 0.00 3.66
480 501 6.939163 ACAAACTCTTCTTTCATCTATGCAGT 59.061 34.615 0.00 0.00 0.00 4.40
481 502 7.375106 ACAAACTCTTCTTTCATCTATGCAG 57.625 36.000 0.00 0.00 0.00 4.41
482 503 7.877612 TGTACAAACTCTTCTTTCATCTATGCA 59.122 33.333 0.00 0.00 0.00 3.96
483 504 8.256611 TGTACAAACTCTTCTTTCATCTATGC 57.743 34.615 0.00 0.00 0.00 3.14
485 506 8.940952 GCTTGTACAAACTCTTCTTTCATCTAT 58.059 33.333 10.03 0.00 0.00 1.98
486 507 7.387948 GGCTTGTACAAACTCTTCTTTCATCTA 59.612 37.037 10.03 0.00 0.00 1.98
487 508 6.205658 GGCTTGTACAAACTCTTCTTTCATCT 59.794 38.462 10.03 0.00 0.00 2.90
488 509 6.374578 GGCTTGTACAAACTCTTCTTTCATC 58.625 40.000 10.03 0.00 0.00 2.92
489 510 5.241728 GGGCTTGTACAAACTCTTCTTTCAT 59.758 40.000 10.03 0.00 0.00 2.57
490 511 4.578928 GGGCTTGTACAAACTCTTCTTTCA 59.421 41.667 10.03 0.00 0.00 2.69
491 512 4.822350 AGGGCTTGTACAAACTCTTCTTTC 59.178 41.667 10.03 0.00 0.00 2.62
492 513 4.793201 AGGGCTTGTACAAACTCTTCTTT 58.207 39.130 10.03 0.00 0.00 2.52
493 514 4.439253 AGGGCTTGTACAAACTCTTCTT 57.561 40.909 10.03 0.00 0.00 2.52
494 515 5.307196 TCTTAGGGCTTGTACAAACTCTTCT 59.693 40.000 16.24 7.51 0.00 2.85
495 516 5.548406 TCTTAGGGCTTGTACAAACTCTTC 58.452 41.667 16.24 0.00 0.00 2.87
496 517 5.562298 TCTTAGGGCTTGTACAAACTCTT 57.438 39.130 16.24 4.86 0.00 2.85
497 518 5.513267 CCTTCTTAGGGCTTGTACAAACTCT 60.513 44.000 15.42 15.42 37.94 3.24
498 519 4.695928 CCTTCTTAGGGCTTGTACAAACTC 59.304 45.833 10.03 5.15 37.94 3.01
499 520 4.652822 CCTTCTTAGGGCTTGTACAAACT 58.347 43.478 10.03 10.44 37.94 2.66
512 533 0.108138 CAGGTGTCGCCCTTCTTAGG 60.108 60.000 0.00 0.00 41.60 2.69
513 534 0.108138 CCAGGTGTCGCCCTTCTTAG 60.108 60.000 0.00 0.00 38.26 2.18
514 535 0.834687 ACCAGGTGTCGCCCTTCTTA 60.835 55.000 0.00 0.00 38.26 2.10
515 536 2.147387 ACCAGGTGTCGCCCTTCTT 61.147 57.895 0.00 0.00 38.26 2.52
516 537 2.526873 ACCAGGTGTCGCCCTTCT 60.527 61.111 0.00 0.00 38.26 2.85
517 538 2.185310 ATCACCAGGTGTCGCCCTTC 62.185 60.000 19.65 0.00 38.26 3.46
518 539 1.779061 AATCACCAGGTGTCGCCCTT 61.779 55.000 19.65 2.59 38.26 3.95
519 540 0.907704 TAATCACCAGGTGTCGCCCT 60.908 55.000 19.65 1.90 38.26 5.19
520 541 0.743345 GTAATCACCAGGTGTCGCCC 60.743 60.000 19.65 1.77 38.26 6.13
521 542 0.036765 TGTAATCACCAGGTGTCGCC 60.037 55.000 19.65 7.22 34.79 5.54
522 543 1.463444 GTTGTAATCACCAGGTGTCGC 59.537 52.381 19.65 8.96 34.79 5.19
523 544 2.478894 GTGTTGTAATCACCAGGTGTCG 59.521 50.000 19.65 0.00 34.79 4.35
524 545 2.478894 CGTGTTGTAATCACCAGGTGTC 59.521 50.000 19.65 9.19 34.79 3.67
525 546 2.103432 TCGTGTTGTAATCACCAGGTGT 59.897 45.455 19.65 3.57 34.79 4.16
526 547 2.478894 GTCGTGTTGTAATCACCAGGTG 59.521 50.000 14.19 14.19 32.86 4.00
527 548 2.762745 GTCGTGTTGTAATCACCAGGT 58.237 47.619 0.00 0.00 32.86 4.00
528 549 1.724623 CGTCGTGTTGTAATCACCAGG 59.275 52.381 0.00 0.00 32.86 4.45
529 550 1.126113 GCGTCGTGTTGTAATCACCAG 59.874 52.381 0.00 0.00 32.86 4.00
530 551 1.141645 GCGTCGTGTTGTAATCACCA 58.858 50.000 0.00 0.00 32.86 4.17
531 552 0.441145 GGCGTCGTGTTGTAATCACC 59.559 55.000 0.00 0.00 32.86 4.02
532 553 1.389106 GAGGCGTCGTGTTGTAATCAC 59.611 52.381 0.00 0.00 0.00 3.06
533 554 1.271379 AGAGGCGTCGTGTTGTAATCA 59.729 47.619 0.00 0.00 0.00 2.57
534 555 1.992170 AGAGGCGTCGTGTTGTAATC 58.008 50.000 0.00 0.00 0.00 1.75
535 556 3.581024 TTAGAGGCGTCGTGTTGTAAT 57.419 42.857 0.00 0.00 0.00 1.89
536 557 3.504863 GATTAGAGGCGTCGTGTTGTAA 58.495 45.455 0.00 0.00 0.00 2.41
537 558 2.476686 CGATTAGAGGCGTCGTGTTGTA 60.477 50.000 0.00 0.00 0.00 2.41
538 559 1.731424 CGATTAGAGGCGTCGTGTTGT 60.731 52.381 0.00 0.00 0.00 3.32
539 560 0.914551 CGATTAGAGGCGTCGTGTTG 59.085 55.000 0.00 0.00 0.00 3.33
540 561 0.801067 GCGATTAGAGGCGTCGTGTT 60.801 55.000 0.00 0.00 37.66 3.32
541 562 1.226603 GCGATTAGAGGCGTCGTGT 60.227 57.895 0.00 0.00 37.66 4.49
542 563 0.306840 TAGCGATTAGAGGCGTCGTG 59.693 55.000 0.00 0.00 37.66 4.35
543 564 0.587285 CTAGCGATTAGAGGCGTCGT 59.413 55.000 0.00 0.00 37.66 4.34
544 565 0.866427 TCTAGCGATTAGAGGCGTCG 59.134 55.000 0.00 0.00 33.42 5.12
545 566 1.602851 TGTCTAGCGATTAGAGGCGTC 59.397 52.381 0.00 0.00 39.05 5.19
546 567 1.334243 GTGTCTAGCGATTAGAGGCGT 59.666 52.381 0.00 0.00 39.05 5.68
547 568 1.335142 GGTGTCTAGCGATTAGAGGCG 60.335 57.143 0.00 0.00 39.05 5.52
548 569 1.957877 AGGTGTCTAGCGATTAGAGGC 59.042 52.381 0.00 0.00 39.05 4.70
549 570 4.391155 AGTAGGTGTCTAGCGATTAGAGG 58.609 47.826 0.00 0.00 39.05 3.69
550 571 5.049954 GTGAGTAGGTGTCTAGCGATTAGAG 60.050 48.000 0.00 0.00 39.05 2.43
551 572 4.815308 GTGAGTAGGTGTCTAGCGATTAGA 59.185 45.833 0.00 0.00 36.03 2.10
552 573 4.023878 GGTGAGTAGGTGTCTAGCGATTAG 60.024 50.000 0.00 0.00 0.00 1.73
553 574 3.881688 GGTGAGTAGGTGTCTAGCGATTA 59.118 47.826 0.00 0.00 0.00 1.75
554 575 2.688958 GGTGAGTAGGTGTCTAGCGATT 59.311 50.000 0.00 0.00 0.00 3.34
555 576 2.092321 AGGTGAGTAGGTGTCTAGCGAT 60.092 50.000 0.00 0.00 0.00 4.58
556 577 1.281287 AGGTGAGTAGGTGTCTAGCGA 59.719 52.381 0.00 0.00 0.00 4.93
557 578 1.752683 AGGTGAGTAGGTGTCTAGCG 58.247 55.000 0.00 0.00 0.00 4.26
558 579 3.215975 CCTAGGTGAGTAGGTGTCTAGC 58.784 54.545 0.00 0.00 35.67 3.42
628 649 6.558771 TCGCCAATTTAATCATAGACCATG 57.441 37.500 0.00 0.00 35.81 3.66
646 667 0.037326 AGAGTGCTCGATTTTCGCCA 60.037 50.000 0.00 0.00 40.21 5.69
653 687 7.856145 AATGAAAGAATAAGAGTGCTCGATT 57.144 32.000 0.00 3.24 34.09 3.34
654 688 7.856145 AAATGAAAGAATAAGAGTGCTCGAT 57.144 32.000 0.00 0.00 34.09 3.59
680 721 0.165944 GTCGATTTGAGCCCAACACG 59.834 55.000 0.00 0.81 34.64 4.49
688 731 2.158957 TGGGGTATGAGTCGATTTGAGC 60.159 50.000 0.00 0.00 0.00 4.26
759 813 7.119605 TGACGTGCGTATACAAAATAGTTTT 57.880 32.000 3.32 0.00 0.00 2.43
767 821 4.994220 AACATTGACGTGCGTATACAAA 57.006 36.364 3.32 0.00 0.00 2.83
770 824 5.141568 ACAAAAACATTGACGTGCGTATAC 58.858 37.500 0.00 0.00 0.00 1.47
771 825 5.050295 TGACAAAAACATTGACGTGCGTATA 60.050 36.000 0.00 0.00 0.00 1.47
772 826 4.215965 GACAAAAACATTGACGTGCGTAT 58.784 39.130 0.00 0.00 0.00 3.06
780 921 4.967575 CCACGTACTGACAAAAACATTGAC 59.032 41.667 0.00 0.00 0.00 3.18
804 949 8.896744 CAAGTGATTTGTGGTCATATAAGATGT 58.103 33.333 0.00 0.00 31.92 3.06
810 955 5.504853 TGGCAAGTGATTTGTGGTCATATA 58.495 37.500 0.00 0.00 39.08 0.86
816 963 2.964464 TGATTGGCAAGTGATTTGTGGT 59.036 40.909 5.96 0.00 39.08 4.16
851 1000 9.653287 CCAGAGTTATCAACAACATAGAAGTAA 57.347 33.333 0.00 0.00 0.00 2.24
901 1060 6.644347 TGACCTGAAAAATAGTTGCCAAAAA 58.356 32.000 0.00 0.00 0.00 1.94
908 1067 7.115378 GCATCAACTTGACCTGAAAAATAGTTG 59.885 37.037 0.00 0.00 41.23 3.16
943 1102 4.413760 ACCAGTTAGCCTTGACTAGTACA 58.586 43.478 0.00 0.00 0.00 2.90
944 1103 6.712179 ATACCAGTTAGCCTTGACTAGTAC 57.288 41.667 0.00 0.00 0.00 2.73
1088 1249 6.323482 TCTTCTTATCTCATCCTCTGTGAAGG 59.677 42.308 0.00 0.00 37.81 3.46
1157 7094 4.142160 GGAGAACACCTTTGCAAACTTCTT 60.142 41.667 8.05 0.00 0.00 2.52
1286 7223 2.892305 GCACAGTAGCCTATGAGCG 58.108 57.895 0.00 0.00 38.01 5.03
1528 8551 7.210873 AGTCTTGATATTCCAAAGTCGGATAC 58.789 38.462 0.00 0.00 34.19 2.24
1610 8633 2.914908 CGGGCAAACAAAGGGTCCG 61.915 63.158 0.00 0.00 0.00 4.79
1637 8660 6.865834 AAACATCACTCTTCTAGGTGAGAT 57.134 37.500 16.17 1.53 44.13 2.75
1646 8669 5.696724 CCGAAACTGTAAACATCACTCTTCT 59.303 40.000 0.00 0.00 0.00 2.85
1724 8747 4.458989 TGAAACATTCAACTATGCTGGTCC 59.541 41.667 0.00 0.00 36.59 4.46
1761 8784 1.552792 CTCACCCTTCTCTTCCCTGTC 59.447 57.143 0.00 0.00 0.00 3.51
1785 8808 5.106948 GCTTGAGATTTCAACATCGAACAGA 60.107 40.000 0.00 0.00 38.37 3.41
1895 8918 1.728971 GAAGACATTCTGCCACGTCTG 59.271 52.381 0.00 0.00 38.68 3.51
1899 8922 1.361668 CCCGAAGACATTCTGCCACG 61.362 60.000 0.00 0.00 32.93 4.94
1909 8932 3.478857 TTTCTTAAGTGCCCGAAGACA 57.521 42.857 1.63 0.00 0.00 3.41
1992 9015 3.754965 AGATTGCTGGTTGTTTAGAGCA 58.245 40.909 0.00 0.00 39.66 4.26
1997 9020 5.560724 AGCTAGAAGATTGCTGGTTGTTTA 58.439 37.500 0.00 0.00 38.64 2.01
2005 9028 3.864583 GTGACTGAGCTAGAAGATTGCTG 59.135 47.826 0.00 0.00 40.27 4.41
2006 9029 3.428725 CGTGACTGAGCTAGAAGATTGCT 60.429 47.826 0.00 0.00 43.04 3.91
2048 9071 1.153958 GAGAAATGGCGGCACAAGC 60.154 57.895 16.34 4.15 41.10 4.01
2116 9139 4.825634 TCTACGATGTATACCCTGACCAAG 59.174 45.833 0.00 0.00 0.00 3.61
2131 9154 7.260558 TCACTCCATAGTAAACTCTACGATG 57.739 40.000 0.00 0.00 33.48 3.84
2132 9155 8.466617 AATCACTCCATAGTAAACTCTACGAT 57.533 34.615 0.00 0.00 33.48 3.73
2158 9181 0.478789 ACCTTGGTTGGACCCCCATA 60.479 55.000 1.05 0.00 43.12 2.74
2182 9205 0.730265 TCAACACTGCCACGTTTGAC 59.270 50.000 0.00 0.00 0.00 3.18
2196 9219 5.745312 AGTCACTTCCATCATAGTCAACA 57.255 39.130 0.00 0.00 0.00 3.33
2210 9233 4.799564 ATCTCTGTCTGGAAGTCACTTC 57.200 45.455 9.27 9.27 39.52 3.01
2211 9234 4.159506 GCTATCTCTGTCTGGAAGTCACTT 59.840 45.833 0.00 0.00 33.76 3.16
2215 9238 2.946329 TCGCTATCTCTGTCTGGAAGTC 59.054 50.000 0.00 0.00 33.76 3.01
2217 9240 3.567585 TCATCGCTATCTCTGTCTGGAAG 59.432 47.826 0.00 0.00 0.00 3.46
2257 9280 3.309388 CGACCAATGGTACGAGATGATC 58.691 50.000 4.23 0.00 35.25 2.92
2269 9292 1.529226 TTGCAGTAACCGACCAATGG 58.471 50.000 0.00 0.00 0.00 3.16
2379 9402 0.685097 AACGCTGCCTCCAACTAAGA 59.315 50.000 0.00 0.00 0.00 2.10
2384 9407 1.079503 CTCTAAACGCTGCCTCCAAC 58.920 55.000 0.00 0.00 0.00 3.77
2412 9435 3.336568 AGGGCATGAGCAGCACCT 61.337 61.111 0.00 0.00 44.61 4.00
2452 9475 4.196193 GTCGACACATAATTGGGGATGAA 58.804 43.478 11.55 0.00 0.00 2.57
2460 9483 3.362534 TGTTCGTCGTCGACACATAATTG 59.637 43.478 24.13 6.28 46.03 2.32
2464 9487 2.905959 ATGTTCGTCGTCGACACATA 57.094 45.000 22.73 10.14 46.03 2.29
2490 9513 2.315925 TCGCAACCAATCTCTCATCC 57.684 50.000 0.00 0.00 0.00 3.51
2507 9530 2.996621 GAGACTTCACATGGAACCTTCG 59.003 50.000 0.00 0.00 0.00 3.79
2508 9531 2.996621 CGAGACTTCACATGGAACCTTC 59.003 50.000 0.00 0.00 0.00 3.46
2518 9541 2.338620 CGGCACCGAGACTTCACA 59.661 61.111 2.01 0.00 42.83 3.58
2530 9553 0.301687 CGTGTGAGATTATGCGGCAC 59.698 55.000 4.03 0.00 0.00 5.01
2543 9566 9.830294 CGTAATCCTTATATATTGTACGTGTGA 57.170 33.333 0.00 0.00 0.00 3.58
2548 9571 9.926751 ATCGACGTAATCCTTATATATTGTACG 57.073 33.333 0.00 0.00 0.00 3.67
2563 9586 5.458126 GGTAAAACTGAGGATCGACGTAATC 59.542 44.000 0.00 0.00 38.61 1.75
2564 9587 5.346522 GGTAAAACTGAGGATCGACGTAAT 58.653 41.667 0.00 0.00 38.61 1.89
2568 9591 2.182825 CGGTAAAACTGAGGATCGACG 58.817 52.381 0.00 0.00 38.61 5.12
2578 9616 3.042887 GTTTGCAAGAGCGGTAAAACTG 58.957 45.455 0.00 0.00 46.23 3.16
2580 9618 3.242936 TGAGTTTGCAAGAGCGGTAAAAC 60.243 43.478 0.00 0.00 46.23 2.43
2590 9628 4.516698 GGATTTCTCTGTGAGTTTGCAAGA 59.483 41.667 0.00 0.00 0.00 3.02
2593 9631 3.149196 GGGATTTCTCTGTGAGTTTGCA 58.851 45.455 0.00 0.00 0.00 4.08
2595 9633 4.763793 ACATGGGATTTCTCTGTGAGTTTG 59.236 41.667 0.00 0.00 0.00 2.93
2596 9634 4.990526 ACATGGGATTTCTCTGTGAGTTT 58.009 39.130 0.00 0.00 0.00 2.66
2614 9652 6.035843 GCACAACACCAAAGGAATATACATG 58.964 40.000 0.00 0.00 0.00 3.21
2625 9663 4.549458 CCTCAAATAGCACAACACCAAAG 58.451 43.478 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.