Multiple sequence alignment - TraesCS5A01G449400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G449400 chr5A 100.000 3190 0 0 1 3190 631502813 631506002 0.000000e+00 5891
1 TraesCS5A01G449400 chr5A 100.000 58 0 0 3485 3542 631506297 631506354 1.340000e-19 108
2 TraesCS5A01G449400 chr5D 94.061 2273 77 16 505 2758 503048031 503050264 0.000000e+00 3397
3 TraesCS5A01G449400 chr5D 81.167 377 55 11 2756 3126 538668717 538669083 4.470000e-74 289
4 TraesCS5A01G449400 chr5D 77.719 377 53 19 2767 3126 340544851 340544489 6.000000e-48 202
5 TraesCS5A01G449400 chr5B 91.248 2331 131 40 505 2802 631825486 631827776 0.000000e+00 3107
6 TraesCS5A01G449400 chr5B 88.291 316 32 4 14 326 426559592 426559905 1.200000e-99 374
7 TraesCS5A01G449400 chr5B 87.402 254 21 7 14 258 426560413 426560664 7.490000e-72 281
8 TraesCS5A01G449400 chr5B 80.418 383 53 13 2756 3126 338490607 338490235 4.510000e-69 272
9 TraesCS5A01G449400 chr3A 79.972 704 130 11 1685 2382 604569224 604569922 3.150000e-140 508
10 TraesCS5A01G449400 chr3D 79.887 706 127 15 1685 2382 462073030 462073728 1.470000e-138 503
11 TraesCS5A01G449400 chr3D 79.887 706 127 13 1685 2382 462204020 462203322 1.470000e-138 503
12 TraesCS5A01G449400 chr3D 92.097 329 18 5 1 329 544441611 544441931 1.160000e-124 457
13 TraesCS5A01G449400 chr3D 90.854 328 21 7 1 328 546319558 546319876 7.020000e-117 431
14 TraesCS5A01G449400 chr3D 86.626 329 23 12 8 327 544440749 544440433 9.410000e-91 344
15 TraesCS5A01G449400 chr3D 78.674 347 50 18 2797 3126 13925923 13926262 3.580000e-50 209
16 TraesCS5A01G449400 chr1A 76.333 938 180 28 1476 2386 449519755 449518833 6.930000e-127 464
17 TraesCS5A01G449400 chr1A 78.307 378 53 18 2767 3126 6024998 6025364 2.140000e-52 217
18 TraesCS5A01G449400 chr1D 76.140 943 173 36 1476 2386 349082359 349081437 6.970000e-122 448
19 TraesCS5A01G449400 chr1B 75.906 938 184 28 1476 2386 470717620 470716698 3.250000e-120 442
20 TraesCS5A01G449400 chr7D 76.613 744 145 24 1660 2384 610420906 610420173 1.990000e-102 383
21 TraesCS5A01G449400 chr7D 81.329 316 53 4 1691 2003 401548300 401547988 5.870000e-63 252
22 TraesCS5A01G449400 chr7D 77.984 377 67 12 2756 3126 147987055 147986689 4.600000e-54 222
23 TraesCS5A01G449400 chr7D 83.645 214 30 3 114 327 14176201 14176409 2.790000e-46 196
24 TraesCS5A01G449400 chr4D 89.796 294 19 8 36 328 290436877 290436594 2.010000e-97 366
25 TraesCS5A01G449400 chr4D 87.188 320 30 9 8 327 290437497 290437805 1.560000e-93 353
26 TraesCS5A01G449400 chr4D 77.105 380 55 22 2755 3126 62295478 62295123 1.300000e-44 191
27 TraesCS5A01G449400 chr7A 76.070 748 148 26 1657 2384 700300901 700301637 9.350000e-96 361
28 TraesCS5A01G449400 chr7A 75.802 748 150 26 1657 2384 700338719 700339455 2.020000e-92 350
29 TraesCS5A01G449400 chr7B 75.774 743 151 24 1661 2384 698683407 698684139 7.280000e-92 348
30 TraesCS5A01G449400 chr7B 83.333 288 44 3 1720 2003 411057518 411057231 2.710000e-66 263
31 TraesCS5A01G449400 chrUn 75.568 704 145 22 1699 2384 77522055 77522749 4.410000e-84 322
32 TraesCS5A01G449400 chr2B 81.270 315 59 0 1691 2005 784773668 784773982 4.540000e-64 255
33 TraesCS5A01G449400 chr2B 81.447 318 29 11 11 327 773858489 773858777 2.130000e-57 233
34 TraesCS5A01G449400 chr4A 83.088 272 36 6 57 328 616284247 616283986 4.570000e-59 239
35 TraesCS5A01G449400 chr4B 77.984 377 52 19 2755 3126 89923645 89923295 1.290000e-49 207
36 TraesCS5A01G449400 chr2A 78.549 317 32 14 14 330 760373561 760373281 3.630000e-40 176
37 TraesCS5A01G449400 chr3B 76.093 389 62 24 2756 3126 105477521 105477896 1.310000e-39 174
38 TraesCS5A01G449400 chr2D 78.571 238 34 10 93 327 630690134 630689911 1.330000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G449400 chr5A 631502813 631506354 3541 False 2999.5 5891 100.0000 1 3542 2 chr5A.!!$F1 3541
1 TraesCS5A01G449400 chr5D 503048031 503050264 2233 False 3397.0 3397 94.0610 505 2758 1 chr5D.!!$F1 2253
2 TraesCS5A01G449400 chr5B 631825486 631827776 2290 False 3107.0 3107 91.2480 505 2802 1 chr5B.!!$F1 2297
3 TraesCS5A01G449400 chr5B 426559592 426560664 1072 False 327.5 374 87.8465 14 326 2 chr5B.!!$F2 312
4 TraesCS5A01G449400 chr3A 604569224 604569922 698 False 508.0 508 79.9720 1685 2382 1 chr3A.!!$F1 697
5 TraesCS5A01G449400 chr3D 462073030 462073728 698 False 503.0 503 79.8870 1685 2382 1 chr3D.!!$F2 697
6 TraesCS5A01G449400 chr3D 462203322 462204020 698 True 503.0 503 79.8870 1685 2382 1 chr3D.!!$R1 697
7 TraesCS5A01G449400 chr1A 449518833 449519755 922 True 464.0 464 76.3330 1476 2386 1 chr1A.!!$R1 910
8 TraesCS5A01G449400 chr1D 349081437 349082359 922 True 448.0 448 76.1400 1476 2386 1 chr1D.!!$R1 910
9 TraesCS5A01G449400 chr1B 470716698 470717620 922 True 442.0 442 75.9060 1476 2386 1 chr1B.!!$R1 910
10 TraesCS5A01G449400 chr7D 610420173 610420906 733 True 383.0 383 76.6130 1660 2384 1 chr7D.!!$R3 724
11 TraesCS5A01G449400 chr7A 700300901 700301637 736 False 361.0 361 76.0700 1657 2384 1 chr7A.!!$F1 727
12 TraesCS5A01G449400 chr7A 700338719 700339455 736 False 350.0 350 75.8020 1657 2384 1 chr7A.!!$F2 727
13 TraesCS5A01G449400 chr7B 698683407 698684139 732 False 348.0 348 75.7740 1661 2384 1 chr7B.!!$F1 723
14 TraesCS5A01G449400 chrUn 77522055 77522749 694 False 322.0 322 75.5680 1699 2384 1 chrUn.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 503 0.030195 TAGGTCCATCCATCCAGGCA 60.030 55.0 0.00 0.00 39.02 4.75 F
857 870 0.033090 AAGAAACCGACGGTGAGTCC 59.967 55.0 22.53 8.18 46.92 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2038 1.671379 GGCGGCGTCCTTCTTCTTT 60.671 57.895 9.37 0.0 0.0 2.52 R
2549 2933 0.099791 GCTACTCTGACTCACTCGCC 59.900 60.000 0.00 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.130373 CGTGTGCACACAACTTGTTCT 59.870 47.619 40.31 0.00 46.75 3.01
72 73 2.518949 GTGTGCACACAACTTGTTCTG 58.481 47.619 38.42 0.00 45.75 3.02
75 76 2.161410 GTGCACACAACTTGTTCTGACA 59.839 45.455 13.17 0.00 35.67 3.58
86 87 8.292448 ACAACTTGTTCTGACATAATGCTAAAG 58.708 33.333 0.00 0.00 35.29 1.85
92 93 6.798427 TCTGACATAATGCTAAAGAGAGGT 57.202 37.500 0.00 0.00 0.00 3.85
94 95 6.381133 TCTGACATAATGCTAAAGAGAGGTGA 59.619 38.462 0.00 0.00 0.00 4.02
183 187 2.945668 GAGCCCCATCTGTCATAAACAC 59.054 50.000 0.00 0.00 33.24 3.32
185 189 2.939640 GCCCCATCTGTCATAAACACGT 60.940 50.000 0.00 0.00 33.24 4.49
189 193 4.635765 CCCATCTGTCATAAACACGTTCAT 59.364 41.667 0.00 0.00 33.24 2.57
210 214 1.202533 ACGACCCTAATCTGCCAATCG 60.203 52.381 0.00 0.00 0.00 3.34
227 231 5.614449 GCCAATCGGTGTTATTTGCAAAAAG 60.614 40.000 17.19 3.13 33.28 2.27
229 233 6.368516 CCAATCGGTGTTATTTGCAAAAAGAT 59.631 34.615 17.19 9.99 0.00 2.40
230 234 7.095271 CCAATCGGTGTTATTTGCAAAAAGATT 60.095 33.333 17.19 14.57 0.00 2.40
232 236 7.861176 TCGGTGTTATTTGCAAAAAGATTAC 57.139 32.000 17.19 10.37 0.00 1.89
233 237 6.579292 TCGGTGTTATTTGCAAAAAGATTACG 59.421 34.615 17.19 14.86 0.00 3.18
234 238 6.521898 GGTGTTATTTGCAAAAAGATTACGC 58.478 36.000 17.19 9.89 0.00 4.42
235 239 6.364976 GGTGTTATTTGCAAAAAGATTACGCT 59.635 34.615 17.19 0.00 0.00 5.07
236 240 7.539366 GGTGTTATTTGCAAAAAGATTACGCTA 59.461 33.333 17.19 0.00 0.00 4.26
237 241 8.575454 GTGTTATTTGCAAAAAGATTACGCTAG 58.425 33.333 17.19 0.00 0.00 3.42
238 242 7.753132 TGTTATTTGCAAAAAGATTACGCTAGG 59.247 33.333 17.19 0.00 0.00 3.02
239 243 3.757745 TGCAAAAAGATTACGCTAGGC 57.242 42.857 0.00 0.00 0.00 3.93
240 244 3.078097 TGCAAAAAGATTACGCTAGGCA 58.922 40.909 0.00 0.00 0.00 4.75
241 245 3.694072 TGCAAAAAGATTACGCTAGGCAT 59.306 39.130 0.00 0.00 0.00 4.40
243 247 4.201910 GCAAAAAGATTACGCTAGGCATGA 60.202 41.667 0.00 0.00 0.00 3.07
284 288 8.848474 AAATGTATAGTAGTGTTTTCTGCTGT 57.152 30.769 0.00 0.00 32.97 4.40
285 289 8.480643 AATGTATAGTAGTGTTTTCTGCTGTC 57.519 34.615 0.00 0.00 32.97 3.51
286 290 6.395629 TGTATAGTAGTGTTTTCTGCTGTCC 58.604 40.000 0.00 0.00 32.97 4.02
289 293 5.140747 AGTAGTGTTTTCTGCTGTCCTAG 57.859 43.478 0.00 0.00 0.00 3.02
305 309 6.061022 TGTCCTAGCCTTCAATTCAATGTA 57.939 37.500 0.00 0.00 0.00 2.29
326 330 6.966021 TGTAGTGGTTTCTTGCAATTTACTC 58.034 36.000 0.00 0.00 0.00 2.59
329 333 5.010012 AGTGGTTTCTTGCAATTTACTCCAG 59.990 40.000 0.00 0.00 0.00 3.86
330 334 4.237724 GGTTTCTTGCAATTTACTCCAGC 58.762 43.478 0.00 0.00 0.00 4.85
331 335 4.237724 GTTTCTTGCAATTTACTCCAGCC 58.762 43.478 0.00 0.00 0.00 4.85
332 336 3.153369 TCTTGCAATTTACTCCAGCCA 57.847 42.857 0.00 0.00 0.00 4.75
333 337 3.495331 TCTTGCAATTTACTCCAGCCAA 58.505 40.909 0.00 0.00 0.00 4.52
334 338 3.507233 TCTTGCAATTTACTCCAGCCAAG 59.493 43.478 0.00 0.00 0.00 3.61
335 339 2.875296 TGCAATTTACTCCAGCCAAGT 58.125 42.857 0.00 0.00 0.00 3.16
336 340 3.230134 TGCAATTTACTCCAGCCAAGTT 58.770 40.909 0.00 0.00 0.00 2.66
337 341 3.005684 TGCAATTTACTCCAGCCAAGTTG 59.994 43.478 0.00 0.00 0.00 3.16
338 342 3.255642 GCAATTTACTCCAGCCAAGTTGA 59.744 43.478 3.87 0.00 0.00 3.18
339 343 4.261994 GCAATTTACTCCAGCCAAGTTGAA 60.262 41.667 3.87 0.00 0.00 2.69
340 344 5.464168 CAATTTACTCCAGCCAAGTTGAAG 58.536 41.667 3.87 0.00 0.00 3.02
341 345 4.431416 TTTACTCCAGCCAAGTTGAAGA 57.569 40.909 3.87 0.00 0.00 2.87
342 346 4.640771 TTACTCCAGCCAAGTTGAAGAT 57.359 40.909 3.87 0.00 0.00 2.40
343 347 3.515602 ACTCCAGCCAAGTTGAAGATT 57.484 42.857 3.87 0.00 0.00 2.40
344 348 3.152341 ACTCCAGCCAAGTTGAAGATTG 58.848 45.455 3.87 0.00 0.00 2.67
345 349 3.181440 ACTCCAGCCAAGTTGAAGATTGA 60.181 43.478 3.87 0.00 0.00 2.57
346 350 4.015084 CTCCAGCCAAGTTGAAGATTGAT 58.985 43.478 3.87 0.00 0.00 2.57
347 351 4.012374 TCCAGCCAAGTTGAAGATTGATC 58.988 43.478 3.87 0.00 0.00 2.92
348 352 3.129988 CCAGCCAAGTTGAAGATTGATCC 59.870 47.826 3.87 0.00 0.00 3.36
349 353 3.012518 AGCCAAGTTGAAGATTGATCCG 58.987 45.455 3.87 0.00 0.00 4.18
350 354 2.478539 GCCAAGTTGAAGATTGATCCGC 60.479 50.000 3.87 0.00 0.00 5.54
351 355 2.749076 CCAAGTTGAAGATTGATCCGCA 59.251 45.455 3.87 0.00 0.00 5.69
352 356 3.426695 CCAAGTTGAAGATTGATCCGCAC 60.427 47.826 3.87 0.00 0.00 5.34
353 357 2.002586 AGTTGAAGATTGATCCGCACG 58.997 47.619 0.00 0.00 0.00 5.34
354 358 0.726827 TTGAAGATTGATCCGCACGC 59.273 50.000 0.00 0.00 0.00 5.34
355 359 0.390998 TGAAGATTGATCCGCACGCA 60.391 50.000 0.00 0.00 0.00 5.24
356 360 0.302890 GAAGATTGATCCGCACGCAG 59.697 55.000 0.00 0.00 0.00 5.18
357 361 0.108186 AAGATTGATCCGCACGCAGA 60.108 50.000 0.00 0.00 0.00 4.26
358 362 0.529337 AGATTGATCCGCACGCAGAG 60.529 55.000 0.00 0.00 0.00 3.35
359 363 1.493950 GATTGATCCGCACGCAGAGG 61.494 60.000 0.00 0.00 0.00 3.69
360 364 4.819761 TGATCCGCACGCAGAGGC 62.820 66.667 0.00 0.00 0.00 4.70
361 365 4.819761 GATCCGCACGCAGAGGCA 62.820 66.667 0.00 0.00 41.24 4.75
362 366 4.827087 ATCCGCACGCAGAGGCAG 62.827 66.667 0.00 0.00 41.24 4.85
367 371 2.745100 CACGCAGAGGCAGTGCAT 60.745 61.111 18.61 10.56 41.26 3.96
368 372 2.033141 ACGCAGAGGCAGTGCATT 59.967 55.556 18.61 3.98 41.26 3.56
369 373 2.037136 ACGCAGAGGCAGTGCATTC 61.037 57.895 18.61 13.71 41.26 2.67
370 374 1.744368 CGCAGAGGCAGTGCATTCT 60.744 57.895 18.61 15.81 41.26 2.40
371 375 1.703438 CGCAGAGGCAGTGCATTCTC 61.703 60.000 18.61 14.13 41.26 2.87
372 376 1.703438 GCAGAGGCAGTGCATTCTCG 61.703 60.000 18.61 13.51 40.86 4.04
373 377 1.088340 CAGAGGCAGTGCATTCTCGG 61.088 60.000 18.61 11.13 0.00 4.63
374 378 1.219124 GAGGCAGTGCATTCTCGGA 59.781 57.895 18.61 0.00 0.00 4.55
375 379 0.809241 GAGGCAGTGCATTCTCGGAG 60.809 60.000 18.61 0.00 0.00 4.63
376 380 1.817099 GGCAGTGCATTCTCGGAGG 60.817 63.158 18.61 0.00 0.00 4.30
377 381 2.467826 GCAGTGCATTCTCGGAGGC 61.468 63.158 11.09 1.43 0.00 4.70
378 382 1.817099 CAGTGCATTCTCGGAGGCC 60.817 63.158 4.96 0.00 0.00 5.19
395 399 2.989639 CGGAGGGGACAAGCATGA 59.010 61.111 0.00 0.00 0.00 3.07
396 400 1.153289 CGGAGGGGACAAGCATGAG 60.153 63.158 0.00 0.00 0.00 2.90
397 401 1.452833 GGAGGGGACAAGCATGAGC 60.453 63.158 0.00 0.00 42.56 4.26
407 411 4.502263 GCATGAGCGCTACAGTCA 57.498 55.556 11.50 3.78 0.00 3.41
408 412 2.983433 GCATGAGCGCTACAGTCAT 58.017 52.632 11.50 6.58 0.00 3.06
409 413 0.857935 GCATGAGCGCTACAGTCATC 59.142 55.000 11.50 0.00 0.00 2.92
410 414 1.495878 CATGAGCGCTACAGTCATCC 58.504 55.000 11.50 0.00 0.00 3.51
411 415 1.114627 ATGAGCGCTACAGTCATCCA 58.885 50.000 11.50 0.00 0.00 3.41
412 416 0.173481 TGAGCGCTACAGTCATCCAC 59.827 55.000 11.50 0.00 0.00 4.02
413 417 0.528684 GAGCGCTACAGTCATCCACC 60.529 60.000 11.50 0.00 0.00 4.61
414 418 1.878522 GCGCTACAGTCATCCACCG 60.879 63.158 0.00 0.00 0.00 4.94
415 419 1.226974 CGCTACAGTCATCCACCGG 60.227 63.158 0.00 0.00 0.00 5.28
416 420 1.144057 GCTACAGTCATCCACCGGG 59.856 63.158 6.32 0.00 0.00 5.73
427 431 1.724545 TCCACCGGGAAAGAAGAAGA 58.275 50.000 6.32 0.00 41.32 2.87
428 432 2.051692 TCCACCGGGAAAGAAGAAGAA 58.948 47.619 6.32 0.00 41.32 2.52
429 433 2.440253 TCCACCGGGAAAGAAGAAGAAA 59.560 45.455 6.32 0.00 41.32 2.52
430 434 3.117813 TCCACCGGGAAAGAAGAAGAAAA 60.118 43.478 6.32 0.00 41.32 2.29
431 435 3.634910 CCACCGGGAAAGAAGAAGAAAAA 59.365 43.478 6.32 0.00 35.59 1.94
432 436 4.261614 CCACCGGGAAAGAAGAAGAAAAAG 60.262 45.833 6.32 0.00 35.59 2.27
433 437 4.578928 CACCGGGAAAGAAGAAGAAAAAGA 59.421 41.667 6.32 0.00 0.00 2.52
434 438 5.067283 CACCGGGAAAGAAGAAGAAAAAGAA 59.933 40.000 6.32 0.00 0.00 2.52
435 439 5.833667 ACCGGGAAAGAAGAAGAAAAAGAAT 59.166 36.000 6.32 0.00 0.00 2.40
436 440 6.152379 CCGGGAAAGAAGAAGAAAAAGAATG 58.848 40.000 0.00 0.00 0.00 2.67
437 441 6.239036 CCGGGAAAGAAGAAGAAAAAGAATGT 60.239 38.462 0.00 0.00 0.00 2.71
438 442 6.858478 CGGGAAAGAAGAAGAAAAAGAATGTC 59.142 38.462 0.00 0.00 0.00 3.06
439 443 7.468631 CGGGAAAGAAGAAGAAAAAGAATGTCA 60.469 37.037 0.00 0.00 0.00 3.58
440 444 8.197439 GGGAAAGAAGAAGAAAAAGAATGTCAA 58.803 33.333 0.00 0.00 0.00 3.18
441 445 9.586435 GGAAAGAAGAAGAAAAAGAATGTCAAA 57.414 29.630 0.00 0.00 0.00 2.69
443 447 8.640091 AAGAAGAAGAAAAAGAATGTCAAAGC 57.360 30.769 0.00 0.00 0.00 3.51
444 448 7.775120 AGAAGAAGAAAAAGAATGTCAAAGCA 58.225 30.769 0.00 0.00 0.00 3.91
445 449 7.704047 AGAAGAAGAAAAAGAATGTCAAAGCAC 59.296 33.333 0.00 0.00 0.00 4.40
446 450 5.973565 AGAAGAAAAAGAATGTCAAAGCACG 59.026 36.000 0.00 0.00 0.00 5.34
447 451 5.499139 AGAAAAAGAATGTCAAAGCACGA 57.501 34.783 0.00 0.00 0.00 4.35
448 452 5.514279 AGAAAAAGAATGTCAAAGCACGAG 58.486 37.500 0.00 0.00 0.00 4.18
449 453 2.977405 AAGAATGTCAAAGCACGAGC 57.023 45.000 0.00 0.00 42.56 5.03
459 463 3.353836 GCACGAGCGAGGCCAAAA 61.354 61.111 5.01 0.00 0.00 2.44
460 464 2.690778 GCACGAGCGAGGCCAAAAT 61.691 57.895 5.01 0.00 0.00 1.82
461 465 1.366111 GCACGAGCGAGGCCAAAATA 61.366 55.000 5.01 0.00 0.00 1.40
462 466 1.299541 CACGAGCGAGGCCAAAATAT 58.700 50.000 5.01 0.00 0.00 1.28
463 467 2.479837 CACGAGCGAGGCCAAAATATA 58.520 47.619 5.01 0.00 0.00 0.86
464 468 2.476619 CACGAGCGAGGCCAAAATATAG 59.523 50.000 5.01 0.00 0.00 1.31
465 469 2.102588 ACGAGCGAGGCCAAAATATAGT 59.897 45.455 5.01 0.00 0.00 2.12
466 470 2.476619 CGAGCGAGGCCAAAATATAGTG 59.523 50.000 5.01 0.00 0.00 2.74
467 471 3.467803 GAGCGAGGCCAAAATATAGTGT 58.532 45.455 5.01 0.00 0.00 3.55
468 472 4.628074 GAGCGAGGCCAAAATATAGTGTA 58.372 43.478 5.01 0.00 0.00 2.90
469 473 4.632153 AGCGAGGCCAAAATATAGTGTAG 58.368 43.478 5.01 0.00 0.00 2.74
470 474 4.344102 AGCGAGGCCAAAATATAGTGTAGA 59.656 41.667 5.01 0.00 0.00 2.59
471 475 4.686554 GCGAGGCCAAAATATAGTGTAGAG 59.313 45.833 5.01 0.00 0.00 2.43
472 476 5.739358 GCGAGGCCAAAATATAGTGTAGAGT 60.739 44.000 5.01 0.00 0.00 3.24
473 477 5.692204 CGAGGCCAAAATATAGTGTAGAGTG 59.308 44.000 5.01 0.00 0.00 3.51
474 478 5.930135 AGGCCAAAATATAGTGTAGAGTGG 58.070 41.667 5.01 0.00 0.00 4.00
475 479 5.428783 AGGCCAAAATATAGTGTAGAGTGGT 59.571 40.000 5.01 0.00 0.00 4.16
476 480 5.527582 GGCCAAAATATAGTGTAGAGTGGTG 59.472 44.000 0.00 0.00 0.00 4.17
477 481 6.113411 GCCAAAATATAGTGTAGAGTGGTGT 58.887 40.000 0.00 0.00 0.00 4.16
478 482 6.258068 GCCAAAATATAGTGTAGAGTGGTGTC 59.742 42.308 0.00 0.00 0.00 3.67
479 483 6.475727 CCAAAATATAGTGTAGAGTGGTGTCG 59.524 42.308 0.00 0.00 0.00 4.35
480 484 6.770746 AAATATAGTGTAGAGTGGTGTCGT 57.229 37.500 0.00 0.00 0.00 4.34
481 485 7.870509 AAATATAGTGTAGAGTGGTGTCGTA 57.129 36.000 0.00 0.00 0.00 3.43
482 486 7.493743 AATATAGTGTAGAGTGGTGTCGTAG 57.506 40.000 0.00 0.00 0.00 3.51
483 487 2.434428 AGTGTAGAGTGGTGTCGTAGG 58.566 52.381 0.00 0.00 0.00 3.18
484 488 2.157738 GTGTAGAGTGGTGTCGTAGGT 58.842 52.381 0.00 0.00 0.00 3.08
485 489 2.161211 GTGTAGAGTGGTGTCGTAGGTC 59.839 54.545 0.00 0.00 0.00 3.85
486 490 1.742268 GTAGAGTGGTGTCGTAGGTCC 59.258 57.143 0.00 0.00 0.00 4.46
487 491 0.111832 AGAGTGGTGTCGTAGGTCCA 59.888 55.000 0.00 0.00 0.00 4.02
488 492 1.183549 GAGTGGTGTCGTAGGTCCAT 58.816 55.000 0.00 0.00 32.45 3.41
489 493 1.134560 GAGTGGTGTCGTAGGTCCATC 59.865 57.143 0.00 0.00 32.45 3.51
490 494 0.175073 GTGGTGTCGTAGGTCCATCC 59.825 60.000 0.00 0.00 32.45 3.51
491 495 0.251877 TGGTGTCGTAGGTCCATCCA 60.252 55.000 0.00 0.00 39.02 3.41
492 496 1.120530 GGTGTCGTAGGTCCATCCAT 58.879 55.000 0.00 0.00 39.02 3.41
493 497 1.068741 GGTGTCGTAGGTCCATCCATC 59.931 57.143 0.00 0.00 39.02 3.51
494 498 1.068741 GTGTCGTAGGTCCATCCATCC 59.931 57.143 0.00 0.00 39.02 3.51
495 499 1.342574 TGTCGTAGGTCCATCCATCCA 60.343 52.381 0.00 0.00 39.02 3.41
496 500 1.341531 GTCGTAGGTCCATCCATCCAG 59.658 57.143 0.00 0.00 39.02 3.86
497 501 0.681733 CGTAGGTCCATCCATCCAGG 59.318 60.000 0.00 0.00 39.02 4.45
498 502 0.398318 GTAGGTCCATCCATCCAGGC 59.602 60.000 0.00 0.00 39.02 4.85
499 503 0.030195 TAGGTCCATCCATCCAGGCA 60.030 55.000 0.00 0.00 39.02 4.75
500 504 1.150081 GGTCCATCCATCCAGGCAG 59.850 63.158 0.00 0.00 37.29 4.85
501 505 1.527844 GTCCATCCATCCAGGCAGC 60.528 63.158 0.00 0.00 37.29 5.25
502 506 1.695239 TCCATCCATCCAGGCAGCT 60.695 57.895 0.00 0.00 37.29 4.24
503 507 1.229359 CCATCCATCCAGGCAGCTT 59.771 57.895 0.00 0.00 37.29 3.74
504 508 0.822532 CCATCCATCCAGGCAGCTTC 60.823 60.000 0.00 0.00 37.29 3.86
505 509 0.822532 CATCCATCCAGGCAGCTTCC 60.823 60.000 0.00 0.00 37.29 3.46
506 510 2.335092 ATCCATCCAGGCAGCTTCCG 62.335 60.000 0.00 0.00 37.29 4.30
507 511 2.270205 CATCCAGGCAGCTTCCGT 59.730 61.111 0.00 0.00 0.00 4.69
508 512 1.817099 CATCCAGGCAGCTTCCGTC 60.817 63.158 0.00 0.00 0.00 4.79
544 551 2.821688 CGAGACGAGGCGACCTACC 61.822 68.421 0.00 0.00 31.76 3.18
552 559 2.023882 GCGACCTACCGTAGCGAC 59.976 66.667 9.08 0.00 33.20 5.19
769 782 2.597217 CCTTCACGGGCAAGCCAA 60.597 61.111 13.87 0.00 37.98 4.52
770 783 2.629656 CCTTCACGGGCAAGCCAAG 61.630 63.158 13.87 8.73 37.98 3.61
771 784 3.273080 CTTCACGGGCAAGCCAAGC 62.273 63.158 13.87 0.00 37.98 4.01
785 798 2.688666 AAGCCAGCCCCAGATCGA 60.689 61.111 0.00 0.00 0.00 3.59
786 799 3.036429 AAGCCAGCCCCAGATCGAC 62.036 63.158 0.00 0.00 0.00 4.20
790 803 4.148825 AGCCCCAGATCGACGCAC 62.149 66.667 0.00 0.00 0.00 5.34
814 827 2.433664 AAATCGCCGTGTCGACCC 60.434 61.111 14.12 0.00 41.62 4.46
848 861 4.084888 CGCCGCCAAGAAACCGAC 62.085 66.667 0.00 0.00 0.00 4.79
849 862 4.084888 GCCGCCAAGAAACCGACG 62.085 66.667 0.00 0.00 0.00 5.12
855 868 0.249741 CCAAGAAACCGACGGTGAGT 60.250 55.000 22.53 9.21 35.34 3.41
856 869 1.137513 CAAGAAACCGACGGTGAGTC 58.862 55.000 22.53 17.72 46.16 3.36
857 870 0.033090 AAGAAACCGACGGTGAGTCC 59.967 55.000 22.53 8.18 46.92 3.85
879 892 0.106149 CCGTCCACCATAAGTAGGGC 59.894 60.000 0.00 0.00 0.00 5.19
909 928 0.826715 CCTCGATCACCACCAGACAT 59.173 55.000 0.00 0.00 0.00 3.06
911 930 2.430694 CCTCGATCACCACCAGACATTA 59.569 50.000 0.00 0.00 0.00 1.90
932 954 3.747099 ATTTGCTTCCATCTCGTTTCG 57.253 42.857 0.00 0.00 0.00 3.46
971 996 2.097466 GCACGGAGAGAAGAGAGAAGAG 59.903 54.545 0.00 0.00 0.00 2.85
1014 1039 2.501610 GAGATGCGAGGGGTGGAC 59.498 66.667 0.00 0.00 0.00 4.02
1633 1658 0.176680 CATCTCCTCCCACCAGTTCG 59.823 60.000 0.00 0.00 0.00 3.95
1815 1840 3.426117 GAAGCGCGGCTACCTGCTA 62.426 63.158 8.83 0.00 38.25 3.49
2492 2876 2.510238 CGGCAAGGAGGAGAAGCG 60.510 66.667 0.00 0.00 0.00 4.68
2516 2900 1.962321 GAGGAAGAAGACGGGGGAGC 61.962 65.000 0.00 0.00 0.00 4.70
2543 2927 0.798776 GCCGTTGACAAGGAGTGATG 59.201 55.000 9.42 0.00 0.00 3.07
2547 2931 2.932614 CGTTGACAAGGAGTGATGGATC 59.067 50.000 1.55 0.00 0.00 3.36
2549 2933 1.482182 TGACAAGGAGTGATGGATCGG 59.518 52.381 0.00 0.00 0.00 4.18
2628 3029 8.922058 TTGGAGATGACGTTTATTTCTACTAC 57.078 34.615 0.00 0.00 0.00 2.73
2629 3030 8.289939 TGGAGATGACGTTTATTTCTACTACT 57.710 34.615 0.00 0.00 0.00 2.57
2630 3031 8.404000 TGGAGATGACGTTTATTTCTACTACTC 58.596 37.037 0.00 0.00 0.00 2.59
2631 3032 7.861872 GGAGATGACGTTTATTTCTACTACTCC 59.138 40.741 0.00 0.00 0.00 3.85
2664 3071 7.881643 ATGATGACGCTTAGAATAATCAGAC 57.118 36.000 0.00 0.00 0.00 3.51
2665 3072 6.216569 TGATGACGCTTAGAATAATCAGACC 58.783 40.000 0.00 0.00 0.00 3.85
2666 3073 4.945246 TGACGCTTAGAATAATCAGACCC 58.055 43.478 0.00 0.00 0.00 4.46
2667 3074 4.404394 TGACGCTTAGAATAATCAGACCCA 59.596 41.667 0.00 0.00 0.00 4.51
2668 3075 4.950050 ACGCTTAGAATAATCAGACCCAG 58.050 43.478 0.00 0.00 0.00 4.45
2669 3076 4.649674 ACGCTTAGAATAATCAGACCCAGA 59.350 41.667 0.00 0.00 0.00 3.86
2670 3077 5.305644 ACGCTTAGAATAATCAGACCCAGAT 59.694 40.000 0.00 0.00 0.00 2.90
2699 3106 2.418083 GCGGGAATGGAAAGGCTGG 61.418 63.158 0.00 0.00 0.00 4.85
2717 3128 0.596859 GGCGGCCACGTCTTCTATAC 60.597 60.000 15.62 0.00 42.51 1.47
2734 3145 4.823442 TCTATACCTGCTCATTTGGCATTG 59.177 41.667 0.00 0.00 39.07 2.82
2760 3171 2.925563 GCTTCGAAAATGCCAAATGGAG 59.074 45.455 2.98 0.00 37.39 3.86
2856 3272 9.657419 TGCCTGAAGATATAATATACATGTGTG 57.343 33.333 9.11 0.00 0.00 3.82
2857 3273 9.658799 GCCTGAAGATATAATATACATGTGTGT 57.341 33.333 9.11 0.00 42.39 3.72
2871 3287 5.757886 ACATGTGTGTAAATTTTCAGGTCG 58.242 37.500 0.00 0.00 36.63 4.79
2872 3288 5.529430 ACATGTGTGTAAATTTTCAGGTCGA 59.471 36.000 0.00 0.00 36.63 4.20
2873 3289 6.038825 ACATGTGTGTAAATTTTCAGGTCGAA 59.961 34.615 0.00 0.00 36.63 3.71
2874 3290 6.438259 TGTGTGTAAATTTTCAGGTCGAAA 57.562 33.333 0.00 0.00 41.95 3.46
2875 3291 7.033530 TGTGTGTAAATTTTCAGGTCGAAAT 57.966 32.000 0.00 0.00 43.12 2.17
2876 3292 8.155821 TGTGTGTAAATTTTCAGGTCGAAATA 57.844 30.769 0.00 0.00 43.12 1.40
2877 3293 8.071368 TGTGTGTAAATTTTCAGGTCGAAATAC 58.929 33.333 0.00 0.00 43.12 1.89
2878 3294 7.536281 GTGTGTAAATTTTCAGGTCGAAATACC 59.464 37.037 0.00 0.00 43.12 2.73
2891 3307 7.368480 GGTCGAAATACCTTAAAAAGCTACA 57.632 36.000 0.00 0.00 36.53 2.74
2892 3308 7.982224 GGTCGAAATACCTTAAAAAGCTACAT 58.018 34.615 0.00 0.00 36.53 2.29
2893 3309 9.101655 GGTCGAAATACCTTAAAAAGCTACATA 57.898 33.333 0.00 0.00 36.53 2.29
2894 3310 9.911980 GTCGAAATACCTTAAAAAGCTACATAC 57.088 33.333 0.00 0.00 0.00 2.39
2895 3311 9.656040 TCGAAATACCTTAAAAAGCTACATACA 57.344 29.630 0.00 0.00 0.00 2.29
2914 3330 8.532977 ACATACAAAAGAAACAAATATGTGCC 57.467 30.769 0.00 0.00 40.46 5.01
2915 3331 8.367156 ACATACAAAAGAAACAAATATGTGCCT 58.633 29.630 0.00 0.00 40.46 4.75
2916 3332 9.206870 CATACAAAAGAAACAAATATGTGCCTT 57.793 29.630 0.00 0.00 40.46 4.35
2917 3333 9.777297 ATACAAAAGAAACAAATATGTGCCTTT 57.223 25.926 0.00 0.00 40.58 3.11
2918 3334 8.504812 ACAAAAGAAACAAATATGTGCCTTTT 57.495 26.923 12.08 12.08 44.20 2.27
2919 3335 8.955388 ACAAAAGAAACAAATATGTGCCTTTTT 58.045 25.926 13.95 5.77 42.69 1.94
2922 3338 7.889589 AGAAACAAATATGTGCCTTTTTAGC 57.110 32.000 0.00 0.00 40.46 3.09
2923 3339 7.441017 AGAAACAAATATGTGCCTTTTTAGCA 58.559 30.769 0.00 0.00 40.46 3.49
2924 3340 8.096414 AGAAACAAATATGTGCCTTTTTAGCAT 58.904 29.630 0.00 0.00 43.29 3.79
2925 3341 9.364989 GAAACAAATATGTGCCTTTTTAGCATA 57.635 29.630 0.00 0.00 43.29 3.14
2926 3342 9.889128 AAACAAATATGTGCCTTTTTAGCATAT 57.111 25.926 0.00 0.78 43.29 1.78
2927 3343 8.876275 ACAAATATGTGCCTTTTTAGCATATG 57.124 30.769 0.00 0.00 41.46 1.78
2928 3344 8.477256 ACAAATATGTGCCTTTTTAGCATATGT 58.523 29.630 4.29 0.00 41.46 2.29
2929 3345 9.964303 CAAATATGTGCCTTTTTAGCATATGTA 57.036 29.630 4.29 0.00 41.46 2.29
2933 3349 7.403312 TGTGCCTTTTTAGCATATGTATTGT 57.597 32.000 4.29 0.00 43.29 2.71
2934 3350 7.835822 TGTGCCTTTTTAGCATATGTATTGTT 58.164 30.769 4.29 0.00 43.29 2.83
2935 3351 7.973388 TGTGCCTTTTTAGCATATGTATTGTTC 59.027 33.333 4.29 0.00 43.29 3.18
2936 3352 7.973388 GTGCCTTTTTAGCATATGTATTGTTCA 59.027 33.333 4.29 0.00 43.29 3.18
2937 3353 8.694540 TGCCTTTTTAGCATATGTATTGTTCAT 58.305 29.630 4.29 0.00 34.69 2.57
2938 3354 9.185192 GCCTTTTTAGCATATGTATTGTTCATC 57.815 33.333 4.29 0.00 0.00 2.92
2939 3355 9.683069 CCTTTTTAGCATATGTATTGTTCATCC 57.317 33.333 4.29 0.00 0.00 3.51
2942 3358 9.625747 TTTTAGCATATGTATTGTTCATCCTCA 57.374 29.630 4.29 0.00 0.00 3.86
2943 3359 9.625747 TTTAGCATATGTATTGTTCATCCTCAA 57.374 29.630 4.29 0.00 0.00 3.02
2944 3360 9.625747 TTAGCATATGTATTGTTCATCCTCAAA 57.374 29.630 4.29 0.00 0.00 2.69
2945 3361 8.162878 AGCATATGTATTGTTCATCCTCAAAG 57.837 34.615 4.29 0.00 0.00 2.77
2946 3362 7.776969 AGCATATGTATTGTTCATCCTCAAAGT 59.223 33.333 4.29 0.00 0.00 2.66
2947 3363 9.056005 GCATATGTATTGTTCATCCTCAAAGTA 57.944 33.333 4.29 0.00 0.00 2.24
2950 3366 7.905604 TGTATTGTTCATCCTCAAAGTACTG 57.094 36.000 0.00 0.00 0.00 2.74
2951 3367 6.878923 TGTATTGTTCATCCTCAAAGTACTGG 59.121 38.462 0.00 0.00 0.00 4.00
2952 3368 5.560722 TTGTTCATCCTCAAAGTACTGGA 57.439 39.130 0.00 0.00 0.00 3.86
2953 3369 5.762179 TGTTCATCCTCAAAGTACTGGAT 57.238 39.130 6.64 6.64 39.64 3.41
2954 3370 6.126863 TGTTCATCCTCAAAGTACTGGATT 57.873 37.500 9.25 0.00 37.22 3.01
2955 3371 6.542821 TGTTCATCCTCAAAGTACTGGATTT 58.457 36.000 9.25 0.00 37.22 2.17
2956 3372 7.004086 TGTTCATCCTCAAAGTACTGGATTTT 58.996 34.615 9.25 0.00 37.22 1.82
2957 3373 7.505585 TGTTCATCCTCAAAGTACTGGATTTTT 59.494 33.333 9.25 0.00 37.22 1.94
2981 3397 3.780925 GCAGCTCGCAATTCAAAGT 57.219 47.368 3.64 0.00 41.79 2.66
2982 3398 2.900122 GCAGCTCGCAATTCAAAGTA 57.100 45.000 3.64 0.00 41.79 2.24
2983 3399 3.411415 GCAGCTCGCAATTCAAAGTAT 57.589 42.857 3.64 0.00 41.79 2.12
2984 3400 3.762779 GCAGCTCGCAATTCAAAGTATT 58.237 40.909 3.64 0.00 41.79 1.89
2985 3401 4.168760 GCAGCTCGCAATTCAAAGTATTT 58.831 39.130 3.64 0.00 39.04 1.40
2986 3402 4.263911 GCAGCTCGCAATTCAAAGTATTTC 59.736 41.667 3.64 0.00 36.93 2.17
2987 3403 5.393124 CAGCTCGCAATTCAAAGTATTTCA 58.607 37.500 0.00 0.00 35.03 2.69
2988 3404 6.032094 CAGCTCGCAATTCAAAGTATTTCAT 58.968 36.000 0.00 0.00 35.03 2.57
2989 3405 6.529125 CAGCTCGCAATTCAAAGTATTTCATT 59.471 34.615 0.00 0.00 35.03 2.57
2990 3406 6.749118 AGCTCGCAATTCAAAGTATTTCATTC 59.251 34.615 0.00 0.00 35.03 2.67
2991 3407 6.749118 GCTCGCAATTCAAAGTATTTCATTCT 59.251 34.615 0.00 0.00 35.03 2.40
2992 3408 7.910162 GCTCGCAATTCAAAGTATTTCATTCTA 59.090 33.333 0.00 0.00 35.03 2.10
2993 3409 9.773328 CTCGCAATTCAAAGTATTTCATTCTAA 57.227 29.630 0.00 0.00 35.03 2.10
3017 3433 8.885494 AAAATTTTACACACATACACATTGCT 57.115 26.923 0.37 0.00 0.00 3.91
3018 3434 8.885494 AAATTTTACACACATACACATTGCTT 57.115 26.923 0.00 0.00 0.00 3.91
3019 3435 8.519492 AATTTTACACACATACACATTGCTTC 57.481 30.769 0.00 0.00 0.00 3.86
3020 3436 5.621197 TTACACACATACACATTGCTTCC 57.379 39.130 0.00 0.00 0.00 3.46
3021 3437 3.754965 ACACACATACACATTGCTTCCT 58.245 40.909 0.00 0.00 0.00 3.36
3022 3438 4.144297 ACACACATACACATTGCTTCCTT 58.856 39.130 0.00 0.00 0.00 3.36
3023 3439 4.022935 ACACACATACACATTGCTTCCTTG 60.023 41.667 0.00 0.00 0.00 3.61
3024 3440 4.022935 CACACATACACATTGCTTCCTTGT 60.023 41.667 0.00 0.00 0.00 3.16
3025 3441 4.022935 ACACATACACATTGCTTCCTTGTG 60.023 41.667 1.02 1.02 44.85 3.33
3030 3446 4.836125 CACATTGCTTCCTTGTGTACTT 57.164 40.909 0.00 0.00 36.77 2.24
3031 3447 4.539870 CACATTGCTTCCTTGTGTACTTG 58.460 43.478 0.00 0.00 36.77 3.16
3032 3448 4.036734 CACATTGCTTCCTTGTGTACTTGT 59.963 41.667 0.00 0.00 36.77 3.16
3033 3449 4.036734 ACATTGCTTCCTTGTGTACTTGTG 59.963 41.667 0.00 0.00 0.00 3.33
3034 3450 3.275617 TGCTTCCTTGTGTACTTGTGT 57.724 42.857 0.00 0.00 0.00 3.72
3035 3451 4.409718 TGCTTCCTTGTGTACTTGTGTA 57.590 40.909 0.00 0.00 0.00 2.90
3036 3452 4.968259 TGCTTCCTTGTGTACTTGTGTAT 58.032 39.130 0.00 0.00 0.00 2.29
3037 3453 5.373222 TGCTTCCTTGTGTACTTGTGTATT 58.627 37.500 0.00 0.00 0.00 1.89
3038 3454 5.825679 TGCTTCCTTGTGTACTTGTGTATTT 59.174 36.000 0.00 0.00 0.00 1.40
3039 3455 6.320164 TGCTTCCTTGTGTACTTGTGTATTTT 59.680 34.615 0.00 0.00 0.00 1.82
3040 3456 7.147983 TGCTTCCTTGTGTACTTGTGTATTTTT 60.148 33.333 0.00 0.00 0.00 1.94
3041 3457 7.378728 GCTTCCTTGTGTACTTGTGTATTTTTC 59.621 37.037 0.00 0.00 0.00 2.29
3042 3458 7.867305 TCCTTGTGTACTTGTGTATTTTTCA 57.133 32.000 0.00 0.00 0.00 2.69
3043 3459 8.282455 TCCTTGTGTACTTGTGTATTTTTCAA 57.718 30.769 0.00 0.00 0.00 2.69
3044 3460 8.740906 TCCTTGTGTACTTGTGTATTTTTCAAA 58.259 29.630 0.00 0.00 0.00 2.69
3045 3461 9.360093 CCTTGTGTACTTGTGTATTTTTCAAAA 57.640 29.630 0.00 0.00 0.00 2.44
3047 3463 9.915629 TTGTGTACTTGTGTATTTTTCAAAACT 57.084 25.926 0.00 0.00 0.00 2.66
3048 3464 9.915629 TGTGTACTTGTGTATTTTTCAAAACTT 57.084 25.926 0.00 0.00 0.00 2.66
3053 3469 9.495572 ACTTGTGTATTTTTCAAAACTTTTGGA 57.504 25.926 13.20 2.93 0.00 3.53
3057 3473 9.549509 GTGTATTTTTCAAAACTTTTGGAAACC 57.450 29.630 17.05 10.50 39.21 3.27
3058 3474 8.443937 TGTATTTTTCAAAACTTTTGGAAACCG 58.556 29.630 17.05 0.00 39.21 4.44
3059 3475 7.674471 ATTTTTCAAAACTTTTGGAAACCGA 57.326 28.000 17.05 6.73 39.21 4.69
3060 3476 7.492352 TTTTTCAAAACTTTTGGAAACCGAA 57.508 28.000 17.05 3.88 39.21 4.30
3061 3477 7.492352 TTTTCAAAACTTTTGGAAACCGAAA 57.508 28.000 14.37 4.47 39.21 3.46
3062 3478 7.492352 TTTCAAAACTTTTGGAAACCGAAAA 57.508 28.000 13.20 2.93 35.69 2.29
3063 3479 6.713792 TCAAAACTTTTGGAAACCGAAAAG 57.286 33.333 13.20 16.10 42.45 2.27
3064 3480 5.639931 TCAAAACTTTTGGAAACCGAAAAGG 59.360 36.000 13.20 8.28 41.51 3.11
3077 3493 4.568152 CCGAAAAGGTTGAGTGTTGAAT 57.432 40.909 0.00 0.00 34.51 2.57
3078 3494 4.932146 CCGAAAAGGTTGAGTGTTGAATT 58.068 39.130 0.00 0.00 34.51 2.17
3079 3495 5.348164 CCGAAAAGGTTGAGTGTTGAATTT 58.652 37.500 0.00 0.00 34.51 1.82
3080 3496 5.810074 CCGAAAAGGTTGAGTGTTGAATTTT 59.190 36.000 0.00 0.00 34.51 1.82
3081 3497 6.312672 CCGAAAAGGTTGAGTGTTGAATTTTT 59.687 34.615 0.00 0.00 34.51 1.94
3101 3517 5.419239 TTTTGAAAATAAGGCCTCCATGG 57.581 39.130 5.23 4.97 39.35 3.66
3102 3518 3.030873 TGAAAATAAGGCCTCCATGGG 57.969 47.619 13.02 2.26 36.00 4.00
3110 3526 2.765807 CCTCCATGGGCTCGGTCT 60.766 66.667 13.02 0.00 0.00 3.85
3111 3527 2.801631 CCTCCATGGGCTCGGTCTC 61.802 68.421 13.02 0.00 0.00 3.36
3112 3528 2.038813 TCCATGGGCTCGGTCTCA 59.961 61.111 13.02 0.00 0.00 3.27
3113 3529 1.612146 TCCATGGGCTCGGTCTCAA 60.612 57.895 13.02 0.00 0.00 3.02
3114 3530 1.198094 TCCATGGGCTCGGTCTCAAA 61.198 55.000 13.02 0.00 0.00 2.69
3115 3531 0.745845 CCATGGGCTCGGTCTCAAAG 60.746 60.000 2.85 0.00 0.00 2.77
3116 3532 0.250234 CATGGGCTCGGTCTCAAAGA 59.750 55.000 0.00 0.00 0.00 2.52
3117 3533 1.134280 CATGGGCTCGGTCTCAAAGAT 60.134 52.381 0.00 0.00 0.00 2.40
3118 3534 0.250234 TGGGCTCGGTCTCAAAGATG 59.750 55.000 0.00 0.00 0.00 2.90
3119 3535 0.462759 GGGCTCGGTCTCAAAGATGG 60.463 60.000 0.00 0.00 0.00 3.51
3120 3536 1.092345 GGCTCGGTCTCAAAGATGGC 61.092 60.000 0.00 0.00 0.00 4.40
3121 3537 1.092345 GCTCGGTCTCAAAGATGGCC 61.092 60.000 0.00 0.00 0.00 5.36
3122 3538 0.539051 CTCGGTCTCAAAGATGGCCT 59.461 55.000 3.32 0.00 0.00 5.19
3123 3539 1.757118 CTCGGTCTCAAAGATGGCCTA 59.243 52.381 3.32 0.00 0.00 3.93
3124 3540 1.480954 TCGGTCTCAAAGATGGCCTAC 59.519 52.381 3.32 0.00 0.00 3.18
3125 3541 1.482593 CGGTCTCAAAGATGGCCTACT 59.517 52.381 3.32 0.00 0.00 2.57
3126 3542 2.693591 CGGTCTCAAAGATGGCCTACTA 59.306 50.000 3.32 0.00 0.00 1.82
3127 3543 3.322254 CGGTCTCAAAGATGGCCTACTAT 59.678 47.826 3.32 0.00 0.00 2.12
3128 3544 4.636249 GGTCTCAAAGATGGCCTACTATG 58.364 47.826 3.32 0.00 0.00 2.23
3129 3545 4.101741 GGTCTCAAAGATGGCCTACTATGT 59.898 45.833 3.32 0.00 0.00 2.29
3130 3546 5.304614 GGTCTCAAAGATGGCCTACTATGTA 59.695 44.000 3.32 0.00 0.00 2.29
3131 3547 6.183360 GGTCTCAAAGATGGCCTACTATGTAA 60.183 42.308 3.32 0.00 0.00 2.41
3132 3548 6.926272 GTCTCAAAGATGGCCTACTATGTAAG 59.074 42.308 3.32 0.00 0.00 2.34
3133 3549 6.839134 TCTCAAAGATGGCCTACTATGTAAGA 59.161 38.462 3.32 1.21 0.00 2.10
3134 3550 7.344612 TCTCAAAGATGGCCTACTATGTAAGAA 59.655 37.037 3.32 0.00 0.00 2.52
3135 3551 7.857456 TCAAAGATGGCCTACTATGTAAGAAA 58.143 34.615 3.32 0.00 0.00 2.52
3136 3552 7.769044 TCAAAGATGGCCTACTATGTAAGAAAC 59.231 37.037 3.32 0.00 0.00 2.78
3137 3553 7.439108 AAGATGGCCTACTATGTAAGAAACT 57.561 36.000 3.32 0.00 0.00 2.66
3138 3554 7.056844 AGATGGCCTACTATGTAAGAAACTC 57.943 40.000 3.32 0.00 0.00 3.01
3139 3555 5.609533 TGGCCTACTATGTAAGAAACTCC 57.390 43.478 3.32 0.00 0.00 3.85
3140 3556 4.407945 TGGCCTACTATGTAAGAAACTCCC 59.592 45.833 3.32 0.00 0.00 4.30
3141 3557 4.407945 GGCCTACTATGTAAGAAACTCCCA 59.592 45.833 0.00 0.00 0.00 4.37
3142 3558 5.104652 GGCCTACTATGTAAGAAACTCCCAA 60.105 44.000 0.00 0.00 0.00 4.12
3143 3559 6.412214 GCCTACTATGTAAGAAACTCCCAAA 58.588 40.000 0.00 0.00 0.00 3.28
3144 3560 6.882678 GCCTACTATGTAAGAAACTCCCAAAA 59.117 38.462 0.00 0.00 0.00 2.44
3145 3561 7.148289 GCCTACTATGTAAGAAACTCCCAAAAC 60.148 40.741 0.00 0.00 0.00 2.43
3146 3562 8.101419 CCTACTATGTAAGAAACTCCCAAAACT 58.899 37.037 0.00 0.00 0.00 2.66
3149 3565 6.819397 ATGTAAGAAACTCCCAAAACTAGC 57.181 37.500 0.00 0.00 0.00 3.42
3150 3566 5.686753 TGTAAGAAACTCCCAAAACTAGCA 58.313 37.500 0.00 0.00 0.00 3.49
3151 3567 5.763204 TGTAAGAAACTCCCAAAACTAGCAG 59.237 40.000 0.00 0.00 0.00 4.24
3152 3568 3.149981 AGAAACTCCCAAAACTAGCAGC 58.850 45.455 0.00 0.00 0.00 5.25
3153 3569 1.523758 AACTCCCAAAACTAGCAGCG 58.476 50.000 0.00 0.00 0.00 5.18
3154 3570 0.321653 ACTCCCAAAACTAGCAGCGG 60.322 55.000 0.00 0.00 0.00 5.52
3155 3571 0.036388 CTCCCAAAACTAGCAGCGGA 60.036 55.000 0.00 0.00 0.00 5.54
3156 3572 0.036388 TCCCAAAACTAGCAGCGGAG 60.036 55.000 0.00 0.00 0.00 4.63
3157 3573 0.321653 CCCAAAACTAGCAGCGGAGT 60.322 55.000 0.00 0.00 0.00 3.85
3158 3574 0.798776 CCAAAACTAGCAGCGGAGTG 59.201 55.000 3.96 0.00 0.00 3.51
3159 3575 0.798776 CAAAACTAGCAGCGGAGTGG 59.201 55.000 3.96 0.00 0.00 4.00
3160 3576 0.321653 AAAACTAGCAGCGGAGTGGG 60.322 55.000 3.96 0.00 0.00 4.61
3161 3577 1.192146 AAACTAGCAGCGGAGTGGGA 61.192 55.000 3.96 0.00 0.00 4.37
3162 3578 1.889530 AACTAGCAGCGGAGTGGGAC 61.890 60.000 3.96 0.00 0.00 4.46
3163 3579 3.417275 CTAGCAGCGGAGTGGGACG 62.417 68.421 0.00 0.00 0.00 4.79
3173 3589 2.025727 GTGGGACGCGACTATCCG 59.974 66.667 15.93 0.00 35.67 4.18
3174 3590 3.214123 TGGGACGCGACTATCCGG 61.214 66.667 15.93 0.00 35.67 5.14
3175 3591 4.642542 GGGACGCGACTATCCGGC 62.643 72.222 15.93 0.00 35.67 6.13
3180 3596 2.657620 GCGACTATCCGGCGAACC 60.658 66.667 9.30 0.00 0.00 3.62
3501 3917 2.434185 GAATGGCCGTGTGAGCGA 60.434 61.111 0.00 0.00 0.00 4.93
3502 3918 2.740714 GAATGGCCGTGTGAGCGAC 61.741 63.158 0.00 0.00 0.00 5.19
3503 3919 3.529341 AATGGCCGTGTGAGCGACA 62.529 57.895 0.00 0.00 0.00 4.35
3504 3920 3.529341 ATGGCCGTGTGAGCGACAA 62.529 57.895 0.00 0.00 35.91 3.18
3505 3921 3.712881 GGCCGTGTGAGCGACAAC 61.713 66.667 0.00 0.00 35.91 3.32
3506 3922 2.964925 GCCGTGTGAGCGACAACA 60.965 61.111 0.00 0.00 35.91 3.33
3507 3923 2.530497 GCCGTGTGAGCGACAACAA 61.530 57.895 0.00 0.00 35.91 2.83
3508 3924 1.564622 CCGTGTGAGCGACAACAAG 59.435 57.895 0.00 0.00 35.91 3.16
3509 3925 0.874175 CCGTGTGAGCGACAACAAGA 60.874 55.000 0.00 0.00 35.91 3.02
3510 3926 0.927537 CGTGTGAGCGACAACAAGAA 59.072 50.000 0.00 0.00 35.91 2.52
3511 3927 1.071239 CGTGTGAGCGACAACAAGAAG 60.071 52.381 0.00 0.00 35.91 2.85
3512 3928 2.201732 GTGTGAGCGACAACAAGAAGA 58.798 47.619 0.00 0.00 35.91 2.87
3513 3929 2.607635 GTGTGAGCGACAACAAGAAGAA 59.392 45.455 0.00 0.00 35.91 2.52
3514 3930 2.607635 TGTGAGCGACAACAAGAAGAAC 59.392 45.455 0.00 0.00 0.00 3.01
3515 3931 2.607635 GTGAGCGACAACAAGAAGAACA 59.392 45.455 0.00 0.00 0.00 3.18
3516 3932 2.607635 TGAGCGACAACAAGAAGAACAC 59.392 45.455 0.00 0.00 0.00 3.32
3517 3933 2.607635 GAGCGACAACAAGAAGAACACA 59.392 45.455 0.00 0.00 0.00 3.72
3518 3934 2.351726 AGCGACAACAAGAAGAACACAC 59.648 45.455 0.00 0.00 0.00 3.82
3519 3935 2.351726 GCGACAACAAGAAGAACACACT 59.648 45.455 0.00 0.00 0.00 3.55
3520 3936 3.544244 GCGACAACAAGAAGAACACACTC 60.544 47.826 0.00 0.00 0.00 3.51
3521 3937 3.301835 CGACAACAAGAAGAACACACTCG 60.302 47.826 0.00 0.00 0.00 4.18
3522 3938 2.351726 ACAACAAGAAGAACACACTCGC 59.648 45.455 0.00 0.00 0.00 5.03
3523 3939 1.209128 ACAAGAAGAACACACTCGCG 58.791 50.000 0.00 0.00 0.00 5.87
3524 3940 0.111089 CAAGAAGAACACACTCGCGC 60.111 55.000 0.00 0.00 0.00 6.86
3525 3941 1.222115 AAGAAGAACACACTCGCGCC 61.222 55.000 0.00 0.00 0.00 6.53
3526 3942 1.954146 GAAGAACACACTCGCGCCA 60.954 57.895 0.00 0.00 0.00 5.69
3527 3943 1.495584 GAAGAACACACTCGCGCCAA 61.496 55.000 0.00 0.00 0.00 4.52
3528 3944 1.772063 AAGAACACACTCGCGCCAAC 61.772 55.000 0.00 0.00 0.00 3.77
3529 3945 2.512745 AACACACTCGCGCCAACA 60.513 55.556 0.00 0.00 0.00 3.33
3530 3946 1.841663 GAACACACTCGCGCCAACAT 61.842 55.000 0.00 0.00 0.00 2.71
3531 3947 1.841663 AACACACTCGCGCCAACATC 61.842 55.000 0.00 0.00 0.00 3.06
3532 3948 3.112075 ACACTCGCGCCAACATCG 61.112 61.111 0.00 0.00 0.00 3.84
3538 3954 2.181525 GCGCCAACATCGCCAATT 59.818 55.556 0.00 0.00 46.18 2.32
3539 3955 1.873572 GCGCCAACATCGCCAATTC 60.874 57.895 0.00 0.00 46.18 2.17
3540 3956 1.226660 CGCCAACATCGCCAATTCC 60.227 57.895 0.00 0.00 0.00 3.01
3541 3957 1.889454 GCCAACATCGCCAATTCCA 59.111 52.632 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.764810 CTCTCTGCCGCAGCTACCG 62.765 68.421 15.98 1.88 40.80 4.02
7 8 2.105930 CTCTCTGCCGCAGCTACC 59.894 66.667 15.98 0.00 40.80 3.18
8 9 2.105930 CCTCTCTGCCGCAGCTAC 59.894 66.667 15.98 0.00 40.80 3.58
9 10 2.043953 TCCTCTCTGCCGCAGCTA 60.044 61.111 15.98 5.00 40.80 3.32
10 11 3.459965 CTCCTCTCTGCCGCAGCT 61.460 66.667 15.98 0.00 40.80 4.24
11 12 4.527583 CCTCCTCTCTGCCGCAGC 62.528 72.222 15.98 0.00 40.48 5.25
12 13 3.073735 ACCTCCTCTCTGCCGCAG 61.074 66.667 14.62 14.62 0.00 5.18
52 53 2.161410 TCAGAACAAGTTGTGTGCACAC 59.839 45.455 37.28 37.28 46.59 3.82
71 72 6.381133 TCTCACCTCTCTTTAGCATTATGTCA 59.619 38.462 0.00 0.00 0.00 3.58
72 73 6.810911 TCTCACCTCTCTTTAGCATTATGTC 58.189 40.000 0.00 0.00 0.00 3.06
75 76 7.066142 TCTCTCTCACCTCTCTTTAGCATTAT 58.934 38.462 0.00 0.00 0.00 1.28
86 87 2.771943 TCCTCTCTCTCTCTCACCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
92 93 3.455910 CTCTTCCTCCTCTCTCTCTCTCA 59.544 52.174 0.00 0.00 0.00 3.27
94 95 3.456277 GACTCTTCCTCCTCTCTCTCTCT 59.544 52.174 0.00 0.00 0.00 3.10
153 157 1.153549 GATGGGGCTCACTCGTCAC 60.154 63.158 0.00 0.00 0.00 3.67
185 189 3.035363 TGGCAGATTAGGGTCGTATGAA 58.965 45.455 0.00 0.00 0.00 2.57
189 193 2.035449 CGATTGGCAGATTAGGGTCGTA 59.965 50.000 0.00 0.00 0.00 3.43
196 200 6.201517 CAAATAACACCGATTGGCAGATTAG 58.798 40.000 0.00 0.00 39.70 1.73
202 206 1.889170 TGCAAATAACACCGATTGGCA 59.111 42.857 0.00 0.00 40.23 4.92
204 208 5.694006 TCTTTTTGCAAATAACACCGATTGG 59.306 36.000 13.65 0.00 42.84 3.16
210 214 6.364976 AGCGTAATCTTTTTGCAAATAACACC 59.635 34.615 13.65 0.00 0.00 4.16
227 231 5.237344 AGAAAACATCATGCCTAGCGTAATC 59.763 40.000 0.00 0.00 0.00 1.75
229 233 4.332543 CAGAAAACATCATGCCTAGCGTAA 59.667 41.667 0.00 0.00 0.00 3.18
230 234 3.871006 CAGAAAACATCATGCCTAGCGTA 59.129 43.478 0.00 0.00 0.00 4.42
232 236 2.540361 GCAGAAAACATCATGCCTAGCG 60.540 50.000 0.00 0.00 32.49 4.26
233 237 3.075866 GCAGAAAACATCATGCCTAGC 57.924 47.619 0.00 0.00 32.49 3.42
283 287 6.037610 CACTACATTGAATTGAAGGCTAGGAC 59.962 42.308 0.00 0.00 0.00 3.85
284 288 6.115446 CACTACATTGAATTGAAGGCTAGGA 58.885 40.000 0.00 0.00 0.00 2.94
285 289 5.297776 CCACTACATTGAATTGAAGGCTAGG 59.702 44.000 0.00 0.00 0.00 3.02
286 290 5.882557 ACCACTACATTGAATTGAAGGCTAG 59.117 40.000 0.00 0.00 0.00 3.42
289 293 5.391312 AACCACTACATTGAATTGAAGGC 57.609 39.130 0.00 0.00 0.00 4.35
290 294 7.219484 AGAAACCACTACATTGAATTGAAGG 57.781 36.000 0.00 0.00 0.00 3.46
293 297 6.040278 TGCAAGAAACCACTACATTGAATTGA 59.960 34.615 0.00 0.00 0.00 2.57
294 298 6.215121 TGCAAGAAACCACTACATTGAATTG 58.785 36.000 0.00 0.00 0.00 2.32
295 299 6.403866 TGCAAGAAACCACTACATTGAATT 57.596 33.333 0.00 0.00 0.00 2.17
296 300 6.403866 TTGCAAGAAACCACTACATTGAAT 57.596 33.333 0.00 0.00 0.00 2.57
305 309 4.892934 TGGAGTAAATTGCAAGAAACCACT 59.107 37.500 4.94 2.10 0.00 4.00
326 330 3.129988 GGATCAATCTTCAACTTGGCTGG 59.870 47.826 0.00 0.00 0.00 4.85
329 333 2.478539 GCGGATCAATCTTCAACTTGGC 60.479 50.000 0.00 0.00 0.00 4.52
330 334 2.749076 TGCGGATCAATCTTCAACTTGG 59.251 45.455 0.00 0.00 0.00 3.61
331 335 3.725895 CGTGCGGATCAATCTTCAACTTG 60.726 47.826 0.00 0.00 0.00 3.16
332 336 2.416547 CGTGCGGATCAATCTTCAACTT 59.583 45.455 0.00 0.00 0.00 2.66
333 337 2.002586 CGTGCGGATCAATCTTCAACT 58.997 47.619 0.00 0.00 0.00 3.16
334 338 1.529826 GCGTGCGGATCAATCTTCAAC 60.530 52.381 0.00 0.00 0.00 3.18
335 339 0.726827 GCGTGCGGATCAATCTTCAA 59.273 50.000 0.00 0.00 0.00 2.69
336 340 0.390998 TGCGTGCGGATCAATCTTCA 60.391 50.000 0.00 0.00 0.00 3.02
337 341 0.302890 CTGCGTGCGGATCAATCTTC 59.697 55.000 0.00 0.00 0.00 2.87
338 342 0.108186 TCTGCGTGCGGATCAATCTT 60.108 50.000 0.00 0.00 0.00 2.40
339 343 0.529337 CTCTGCGTGCGGATCAATCT 60.529 55.000 3.45 0.00 0.00 2.40
340 344 1.493950 CCTCTGCGTGCGGATCAATC 61.494 60.000 3.45 0.00 0.00 2.67
341 345 1.522355 CCTCTGCGTGCGGATCAAT 60.522 57.895 3.45 0.00 0.00 2.57
342 346 2.125552 CCTCTGCGTGCGGATCAA 60.126 61.111 3.45 0.00 0.00 2.57
343 347 4.819761 GCCTCTGCGTGCGGATCA 62.820 66.667 3.45 0.00 0.00 2.92
344 348 4.819761 TGCCTCTGCGTGCGGATC 62.820 66.667 3.45 0.44 41.78 3.36
345 349 4.827087 CTGCCTCTGCGTGCGGAT 62.827 66.667 3.45 0.00 41.78 4.18
350 354 2.249557 GAATGCACTGCCTCTGCGTG 62.250 60.000 0.00 0.00 41.62 5.34
351 355 2.033141 AATGCACTGCCTCTGCGT 59.967 55.556 0.00 0.00 41.78 5.24
352 356 1.703438 GAGAATGCACTGCCTCTGCG 61.703 60.000 7.32 0.00 41.78 5.18
353 357 1.703438 CGAGAATGCACTGCCTCTGC 61.703 60.000 7.32 0.00 38.26 4.26
354 358 1.088340 CCGAGAATGCACTGCCTCTG 61.088 60.000 7.32 0.00 0.00 3.35
355 359 1.220206 CCGAGAATGCACTGCCTCT 59.780 57.895 0.00 0.41 0.00 3.69
356 360 0.809241 CTCCGAGAATGCACTGCCTC 60.809 60.000 0.00 0.00 0.00 4.70
357 361 1.220206 CTCCGAGAATGCACTGCCT 59.780 57.895 0.00 0.00 0.00 4.75
358 362 1.817099 CCTCCGAGAATGCACTGCC 60.817 63.158 0.00 0.00 0.00 4.85
359 363 2.467826 GCCTCCGAGAATGCACTGC 61.468 63.158 0.00 0.00 0.00 4.40
360 364 1.817099 GGCCTCCGAGAATGCACTG 60.817 63.158 0.00 0.00 0.00 3.66
361 365 2.586792 GGCCTCCGAGAATGCACT 59.413 61.111 0.00 0.00 0.00 4.40
373 377 3.787001 CTTGTCCCCTCCGGCCTC 61.787 72.222 0.00 0.00 0.00 4.70
376 380 4.115199 ATGCTTGTCCCCTCCGGC 62.115 66.667 0.00 0.00 0.00 6.13
377 381 2.124570 CATGCTTGTCCCCTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
378 382 1.153289 CTCATGCTTGTCCCCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
379 383 1.452833 GCTCATGCTTGTCCCCTCC 60.453 63.158 0.00 0.00 36.03 4.30
380 384 1.817099 CGCTCATGCTTGTCCCCTC 60.817 63.158 0.00 0.00 36.97 4.30
381 385 2.270205 CGCTCATGCTTGTCCCCT 59.730 61.111 0.00 0.00 36.97 4.79
382 386 2.593468 TAGCGCTCATGCTTGTCCCC 62.593 60.000 16.34 0.00 44.46 4.81
383 387 1.153369 TAGCGCTCATGCTTGTCCC 60.153 57.895 16.34 0.00 44.46 4.46
384 388 0.740868 TGTAGCGCTCATGCTTGTCC 60.741 55.000 16.34 0.00 44.46 4.02
385 389 0.649475 CTGTAGCGCTCATGCTTGTC 59.351 55.000 16.34 0.00 44.46 3.18
386 390 0.036952 ACTGTAGCGCTCATGCTTGT 60.037 50.000 16.34 3.10 44.46 3.16
387 391 0.649475 GACTGTAGCGCTCATGCTTG 59.351 55.000 16.34 2.45 44.46 4.01
388 392 0.247460 TGACTGTAGCGCTCATGCTT 59.753 50.000 16.34 0.00 44.46 3.91
390 394 0.857935 GATGACTGTAGCGCTCATGC 59.142 55.000 16.34 3.42 0.00 4.06
391 395 1.202452 TGGATGACTGTAGCGCTCATG 60.202 52.381 16.34 7.63 0.00 3.07
392 396 1.114627 TGGATGACTGTAGCGCTCAT 58.885 50.000 16.34 11.63 0.00 2.90
393 397 0.173481 GTGGATGACTGTAGCGCTCA 59.827 55.000 16.34 11.48 0.00 4.26
394 398 0.528684 GGTGGATGACTGTAGCGCTC 60.529 60.000 16.34 6.54 0.00 5.03
395 399 1.517832 GGTGGATGACTGTAGCGCT 59.482 57.895 17.26 17.26 0.00 5.92
396 400 1.878522 CGGTGGATGACTGTAGCGC 60.879 63.158 0.00 0.00 0.00 5.92
397 401 1.226974 CCGGTGGATGACTGTAGCG 60.227 63.158 0.00 0.00 0.00 4.26
398 402 1.144057 CCCGGTGGATGACTGTAGC 59.856 63.158 0.00 0.00 0.00 3.58
399 403 1.191535 TTCCCGGTGGATGACTGTAG 58.808 55.000 0.00 0.00 41.40 2.74
400 404 1.553248 CTTTCCCGGTGGATGACTGTA 59.447 52.381 0.00 0.00 41.40 2.74
401 405 0.324943 CTTTCCCGGTGGATGACTGT 59.675 55.000 0.00 0.00 41.40 3.55
402 406 0.613260 TCTTTCCCGGTGGATGACTG 59.387 55.000 0.00 0.00 41.40 3.51
403 407 1.279271 CTTCTTTCCCGGTGGATGACT 59.721 52.381 0.00 0.00 41.40 3.41
404 408 1.278127 TCTTCTTTCCCGGTGGATGAC 59.722 52.381 0.00 0.00 41.40 3.06
405 409 1.651737 TCTTCTTTCCCGGTGGATGA 58.348 50.000 0.00 0.00 41.40 2.92
406 410 2.027192 TCTTCTTCTTTCCCGGTGGATG 60.027 50.000 0.00 0.00 41.40 3.51
407 411 2.266279 TCTTCTTCTTTCCCGGTGGAT 58.734 47.619 0.00 0.00 41.40 3.41
408 412 1.724545 TCTTCTTCTTTCCCGGTGGA 58.275 50.000 0.00 0.00 39.54 4.02
409 413 2.561478 TTCTTCTTCTTTCCCGGTGG 57.439 50.000 0.00 0.00 0.00 4.61
410 414 4.578928 TCTTTTTCTTCTTCTTTCCCGGTG 59.421 41.667 0.00 0.00 0.00 4.94
411 415 4.788679 TCTTTTTCTTCTTCTTTCCCGGT 58.211 39.130 0.00 0.00 0.00 5.28
412 416 5.767816 TTCTTTTTCTTCTTCTTTCCCGG 57.232 39.130 0.00 0.00 0.00 5.73
413 417 6.739112 ACATTCTTTTTCTTCTTCTTTCCCG 58.261 36.000 0.00 0.00 0.00 5.14
414 418 7.716612 TGACATTCTTTTTCTTCTTCTTTCCC 58.283 34.615 0.00 0.00 0.00 3.97
415 419 9.586435 TTTGACATTCTTTTTCTTCTTCTTTCC 57.414 29.630 0.00 0.00 0.00 3.13
417 421 9.091784 GCTTTGACATTCTTTTTCTTCTTCTTT 57.908 29.630 0.00 0.00 0.00 2.52
418 422 8.253113 TGCTTTGACATTCTTTTTCTTCTTCTT 58.747 29.630 0.00 0.00 0.00 2.52
419 423 7.704047 GTGCTTTGACATTCTTTTTCTTCTTCT 59.296 33.333 0.00 0.00 0.00 2.85
420 424 7.305648 CGTGCTTTGACATTCTTTTTCTTCTTC 60.306 37.037 0.00 0.00 0.00 2.87
421 425 6.473455 CGTGCTTTGACATTCTTTTTCTTCTT 59.527 34.615 0.00 0.00 0.00 2.52
422 426 5.973565 CGTGCTTTGACATTCTTTTTCTTCT 59.026 36.000 0.00 0.00 0.00 2.85
423 427 5.971202 TCGTGCTTTGACATTCTTTTTCTTC 59.029 36.000 0.00 0.00 0.00 2.87
424 428 5.890334 TCGTGCTTTGACATTCTTTTTCTT 58.110 33.333 0.00 0.00 0.00 2.52
425 429 5.499139 TCGTGCTTTGACATTCTTTTTCT 57.501 34.783 0.00 0.00 0.00 2.52
426 430 4.147133 GCTCGTGCTTTGACATTCTTTTTC 59.853 41.667 1.41 0.00 36.03 2.29
427 431 4.044426 GCTCGTGCTTTGACATTCTTTTT 58.956 39.130 1.41 0.00 36.03 1.94
428 432 3.632189 GCTCGTGCTTTGACATTCTTTT 58.368 40.909 1.41 0.00 36.03 2.27
429 433 2.349817 CGCTCGTGCTTTGACATTCTTT 60.350 45.455 7.97 0.00 36.97 2.52
430 434 1.195448 CGCTCGTGCTTTGACATTCTT 59.805 47.619 7.97 0.00 36.97 2.52
431 435 0.792640 CGCTCGTGCTTTGACATTCT 59.207 50.000 7.97 0.00 36.97 2.40
432 436 0.790207 TCGCTCGTGCTTTGACATTC 59.210 50.000 7.97 0.00 36.97 2.67
433 437 0.792640 CTCGCTCGTGCTTTGACATT 59.207 50.000 7.97 0.00 36.97 2.71
434 438 1.016130 CCTCGCTCGTGCTTTGACAT 61.016 55.000 7.97 0.00 36.97 3.06
435 439 1.664649 CCTCGCTCGTGCTTTGACA 60.665 57.895 7.97 0.00 36.97 3.58
436 440 3.016474 GCCTCGCTCGTGCTTTGAC 62.016 63.158 7.97 0.00 36.97 3.18
437 441 2.738521 GCCTCGCTCGTGCTTTGA 60.739 61.111 7.97 0.00 36.97 2.69
438 442 3.793144 GGCCTCGCTCGTGCTTTG 61.793 66.667 7.97 0.00 36.97 2.77
439 443 3.825160 TTGGCCTCGCTCGTGCTTT 62.825 57.895 3.32 0.00 36.97 3.51
440 444 3.825160 TTTGGCCTCGCTCGTGCTT 62.825 57.895 3.32 0.00 36.97 3.91
441 445 3.708426 TATTTTGGCCTCGCTCGTGCT 62.708 52.381 3.32 0.00 36.97 4.40
442 446 1.366111 TATTTTGGCCTCGCTCGTGC 61.366 55.000 3.32 0.00 0.00 5.34
443 447 1.299541 ATATTTTGGCCTCGCTCGTG 58.700 50.000 3.32 0.00 0.00 4.35
444 448 2.102588 ACTATATTTTGGCCTCGCTCGT 59.897 45.455 3.32 0.00 0.00 4.18
445 449 2.476619 CACTATATTTTGGCCTCGCTCG 59.523 50.000 3.32 0.00 0.00 5.03
446 450 3.467803 ACACTATATTTTGGCCTCGCTC 58.532 45.455 3.32 0.00 0.00 5.03
447 451 3.560636 ACACTATATTTTGGCCTCGCT 57.439 42.857 3.32 0.00 0.00 4.93
448 452 4.628074 TCTACACTATATTTTGGCCTCGC 58.372 43.478 3.32 0.00 0.00 5.03
449 453 5.692204 CACTCTACACTATATTTTGGCCTCG 59.308 44.000 3.32 0.00 0.00 4.63
450 454 5.992217 CCACTCTACACTATATTTTGGCCTC 59.008 44.000 3.32 0.00 0.00 4.70
451 455 5.428783 ACCACTCTACACTATATTTTGGCCT 59.571 40.000 3.32 0.00 0.00 5.19
452 456 5.527582 CACCACTCTACACTATATTTTGGCC 59.472 44.000 0.00 0.00 0.00 5.36
453 457 6.113411 ACACCACTCTACACTATATTTTGGC 58.887 40.000 0.00 0.00 0.00 4.52
454 458 6.475727 CGACACCACTCTACACTATATTTTGG 59.524 42.308 0.00 0.00 0.00 3.28
455 459 7.033791 ACGACACCACTCTACACTATATTTTG 58.966 38.462 0.00 0.00 0.00 2.44
456 460 7.166691 ACGACACCACTCTACACTATATTTT 57.833 36.000 0.00 0.00 0.00 1.82
457 461 6.770746 ACGACACCACTCTACACTATATTT 57.229 37.500 0.00 0.00 0.00 1.40
458 462 6.485984 CCTACGACACCACTCTACACTATATT 59.514 42.308 0.00 0.00 0.00 1.28
459 463 5.996513 CCTACGACACCACTCTACACTATAT 59.003 44.000 0.00 0.00 0.00 0.86
460 464 5.104776 ACCTACGACACCACTCTACACTATA 60.105 44.000 0.00 0.00 0.00 1.31
461 465 4.197750 CCTACGACACCACTCTACACTAT 58.802 47.826 0.00 0.00 0.00 2.12
462 466 3.008375 ACCTACGACACCACTCTACACTA 59.992 47.826 0.00 0.00 0.00 2.74
463 467 2.224719 ACCTACGACACCACTCTACACT 60.225 50.000 0.00 0.00 0.00 3.55
464 468 2.157738 ACCTACGACACCACTCTACAC 58.842 52.381 0.00 0.00 0.00 2.90
465 469 2.430465 GACCTACGACACCACTCTACA 58.570 52.381 0.00 0.00 0.00 2.74
466 470 1.742268 GGACCTACGACACCACTCTAC 59.258 57.143 0.00 0.00 0.00 2.59
467 471 1.352017 TGGACCTACGACACCACTCTA 59.648 52.381 0.00 0.00 0.00 2.43
468 472 0.111832 TGGACCTACGACACCACTCT 59.888 55.000 0.00 0.00 0.00 3.24
469 473 1.134560 GATGGACCTACGACACCACTC 59.865 57.143 0.00 0.00 35.19 3.51
470 474 1.183549 GATGGACCTACGACACCACT 58.816 55.000 0.00 0.00 35.19 4.00
471 475 0.175073 GGATGGACCTACGACACCAC 59.825 60.000 0.00 0.00 35.19 4.16
472 476 0.251877 TGGATGGACCTACGACACCA 60.252 55.000 0.00 0.00 39.86 4.17
473 477 1.068741 GATGGATGGACCTACGACACC 59.931 57.143 0.00 0.00 39.86 4.16
474 478 1.068741 GGATGGATGGACCTACGACAC 59.931 57.143 0.00 0.00 39.86 3.67
475 479 1.342574 TGGATGGATGGACCTACGACA 60.343 52.381 0.00 0.00 39.86 4.35
476 480 1.341531 CTGGATGGATGGACCTACGAC 59.658 57.143 0.00 0.00 39.86 4.34
477 481 1.704641 CTGGATGGATGGACCTACGA 58.295 55.000 0.00 0.00 39.86 3.43
478 482 0.681733 CCTGGATGGATGGACCTACG 59.318 60.000 0.00 0.00 39.86 3.51
479 483 0.398318 GCCTGGATGGATGGACCTAC 59.602 60.000 0.00 0.00 39.86 3.18
480 484 0.030195 TGCCTGGATGGATGGACCTA 60.030 55.000 0.00 0.00 39.86 3.08
481 485 1.308128 TGCCTGGATGGATGGACCT 60.308 57.895 0.00 0.00 39.86 3.85
482 486 1.150081 CTGCCTGGATGGATGGACC 59.850 63.158 0.00 0.00 38.35 4.46
483 487 1.527844 GCTGCCTGGATGGATGGAC 60.528 63.158 0.00 0.00 38.35 4.02
484 488 1.284111 AAGCTGCCTGGATGGATGGA 61.284 55.000 0.00 0.00 38.35 3.41
485 489 0.822532 GAAGCTGCCTGGATGGATGG 60.823 60.000 0.00 0.00 38.35 3.51
486 490 0.822532 GGAAGCTGCCTGGATGGATG 60.823 60.000 2.27 0.00 38.35 3.51
487 491 1.535685 GGAAGCTGCCTGGATGGAT 59.464 57.895 2.27 0.00 38.35 3.41
488 492 3.001514 GGAAGCTGCCTGGATGGA 58.998 61.111 2.27 0.00 38.35 3.41
489 493 2.515523 CGGAAGCTGCCTGGATGG 60.516 66.667 9.73 0.00 39.35 3.51
490 494 1.817099 GACGGAAGCTGCCTGGATG 60.817 63.158 9.73 0.00 0.00 3.51
491 495 2.586792 GACGGAAGCTGCCTGGAT 59.413 61.111 9.73 0.00 0.00 3.41
492 496 4.069232 CGACGGAAGCTGCCTGGA 62.069 66.667 9.73 0.00 0.00 3.86
493 497 3.376935 ATCGACGGAAGCTGCCTGG 62.377 63.158 9.73 0.00 0.00 4.45
494 498 1.880340 GATCGACGGAAGCTGCCTG 60.880 63.158 9.73 5.03 0.00 4.85
495 499 2.496817 GATCGACGGAAGCTGCCT 59.503 61.111 9.73 0.00 0.00 4.75
496 500 2.586357 GGATCGACGGAAGCTGCC 60.586 66.667 0.00 0.00 0.00 4.85
497 501 2.167861 GTGGATCGACGGAAGCTGC 61.168 63.158 0.00 0.00 0.00 5.25
498 502 0.108615 AAGTGGATCGACGGAAGCTG 60.109 55.000 1.90 0.00 0.00 4.24
499 503 0.108615 CAAGTGGATCGACGGAAGCT 60.109 55.000 1.90 0.00 0.00 3.74
500 504 0.108804 TCAAGTGGATCGACGGAAGC 60.109 55.000 1.90 0.00 0.00 3.86
501 505 1.914634 CTCAAGTGGATCGACGGAAG 58.085 55.000 1.90 0.00 0.00 3.46
502 506 0.108804 GCTCAAGTGGATCGACGGAA 60.109 55.000 1.90 0.00 0.00 4.30
503 507 1.248101 TGCTCAAGTGGATCGACGGA 61.248 55.000 1.90 3.99 0.00 4.69
504 508 0.389817 TTGCTCAAGTGGATCGACGG 60.390 55.000 1.90 0.00 0.00 4.79
505 509 0.994995 CTTGCTCAAGTGGATCGACG 59.005 55.000 1.90 0.00 33.87 5.12
506 510 1.996191 GTCTTGCTCAAGTGGATCGAC 59.004 52.381 9.20 0.00 39.38 4.20
507 511 1.402852 CGTCTTGCTCAAGTGGATCGA 60.403 52.381 9.20 0.00 39.38 3.59
508 512 0.994995 CGTCTTGCTCAAGTGGATCG 59.005 55.000 9.20 5.11 39.38 3.69
544 551 2.152699 CGCTTGTGGAGTCGCTACG 61.153 63.158 0.00 0.00 0.00 3.51
552 559 2.356313 ACAGCGACGCTTGTGGAG 60.356 61.111 21.97 10.47 36.40 3.86
579 586 2.884207 CGTAGGCCGGCGAAAGAC 60.884 66.667 22.54 12.22 0.00 3.01
769 782 3.474570 GTCGATCTGGGGCTGGCT 61.475 66.667 0.00 0.00 0.00 4.75
770 783 4.899239 CGTCGATCTGGGGCTGGC 62.899 72.222 0.00 0.00 0.00 4.85
771 784 4.899239 GCGTCGATCTGGGGCTGG 62.899 72.222 0.00 0.00 0.00 4.85
772 785 4.147449 TGCGTCGATCTGGGGCTG 62.147 66.667 0.00 0.00 0.00 4.85
773 786 4.148825 GTGCGTCGATCTGGGGCT 62.149 66.667 0.00 0.00 0.00 5.19
785 798 1.574428 GCGATTTGTCTTGGTGCGT 59.426 52.632 0.00 0.00 0.00 5.24
786 799 1.154225 GGCGATTTGTCTTGGTGCG 60.154 57.895 0.00 0.00 0.00 5.34
790 803 0.165944 GACACGGCGATTTGTCTTGG 59.834 55.000 16.62 0.00 39.30 3.61
814 827 2.499685 GAAGGTGATCGGACGGGG 59.500 66.667 0.00 0.00 0.00 5.73
849 862 2.987547 TGGACGGACGGACTCACC 60.988 66.667 0.00 0.00 0.00 4.02
855 868 0.612732 ACTTATGGTGGACGGACGGA 60.613 55.000 0.00 0.00 0.00 4.69
856 869 1.066605 CTACTTATGGTGGACGGACGG 59.933 57.143 0.00 0.00 0.00 4.79
857 870 1.066605 CCTACTTATGGTGGACGGACG 59.933 57.143 0.00 0.00 0.00 4.79
858 871 1.411612 CCCTACTTATGGTGGACGGAC 59.588 57.143 0.00 0.00 0.00 4.79
909 928 5.391523 CCGAAACGAGATGGAAGCAAATTAA 60.392 40.000 0.00 0.00 0.00 1.40
911 930 3.119849 CCGAAACGAGATGGAAGCAAATT 60.120 43.478 0.00 0.00 0.00 1.82
932 954 2.359975 CGGCCAGAACCCAGAACC 60.360 66.667 2.24 0.00 0.00 3.62
962 984 4.258543 TCGAACTCTTCTCCTCTTCTCTC 58.741 47.826 0.00 0.00 0.00 3.20
971 996 1.066454 GGCTAGCTCGAACTCTTCTCC 59.934 57.143 15.72 0.00 0.00 3.71
1176 1201 2.439883 AGGTAGGGGTCGACGAGC 60.440 66.667 18.44 18.44 0.00 5.03
1401 1426 2.671682 GAGGCCCACCAGAAGACC 59.328 66.667 0.00 0.00 39.06 3.85
2013 2038 1.671379 GGCGGCGTCCTTCTTCTTT 60.671 57.895 9.37 0.00 0.00 2.52
2040 2077 2.281484 TTGCTGGCCTTGTCGACC 60.281 61.111 14.12 0.00 0.00 4.79
2042 2079 2.032528 CCTTGCTGGCCTTGTCGA 59.967 61.111 3.32 0.00 0.00 4.20
2043 2080 3.058160 CCCTTGCTGGCCTTGTCG 61.058 66.667 3.32 0.00 0.00 4.35
2473 2857 2.124942 CTTCTCCTCCTTGCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
2474 2858 2.821810 GCTTCTCCTCCTTGCCGC 60.822 66.667 0.00 0.00 0.00 6.53
2475 2859 2.510238 CGCTTCTCCTCCTTGCCG 60.510 66.667 0.00 0.00 0.00 5.69
2476 2860 2.124942 CCGCTTCTCCTCCTTGCC 60.125 66.667 0.00 0.00 0.00 4.52
2477 2861 2.821810 GCCGCTTCTCCTCCTTGC 60.822 66.667 0.00 0.00 0.00 4.01
2478 2862 2.124942 GGCCGCTTCTCCTCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
2479 2863 3.775654 CGGCCGCTTCTCCTCCTT 61.776 66.667 14.67 0.00 0.00 3.36
2492 2876 2.184579 CGTCTTCTTCCTCCGGCC 59.815 66.667 0.00 0.00 0.00 6.13
2543 2927 2.343163 CTGACTCACTCGCCCGATCC 62.343 65.000 0.00 0.00 0.00 3.36
2547 2931 1.025113 TACTCTGACTCACTCGCCCG 61.025 60.000 0.00 0.00 0.00 6.13
2549 2933 0.099791 GCTACTCTGACTCACTCGCC 59.900 60.000 0.00 0.00 0.00 5.54
2595 2981 4.882671 AACGTCATCTCCAATAATGTGC 57.117 40.909 0.00 0.00 0.00 4.57
2624 3025 5.665459 GTCATCATTACTTGCTGGAGTAGT 58.335 41.667 0.00 0.00 33.91 2.73
2625 3026 4.742167 CGTCATCATTACTTGCTGGAGTAG 59.258 45.833 0.00 0.00 33.91 2.57
2626 3027 4.682787 CGTCATCATTACTTGCTGGAGTA 58.317 43.478 0.00 0.00 0.00 2.59
2627 3028 3.525537 CGTCATCATTACTTGCTGGAGT 58.474 45.455 0.00 0.00 0.00 3.85
2628 3029 2.286294 GCGTCATCATTACTTGCTGGAG 59.714 50.000 0.00 0.00 0.00 3.86
2629 3030 2.093500 AGCGTCATCATTACTTGCTGGA 60.093 45.455 0.00 0.00 0.00 3.86
2630 3031 2.283298 AGCGTCATCATTACTTGCTGG 58.717 47.619 0.00 0.00 0.00 4.85
2631 3032 4.805719 TCTAAGCGTCATCATTACTTGCTG 59.194 41.667 0.00 0.00 0.00 4.41
2664 3071 0.457035 CGCCAACATCCAAATCTGGG 59.543 55.000 0.00 0.00 43.71 4.45
2665 3072 0.457035 CCGCCAACATCCAAATCTGG 59.543 55.000 0.00 0.00 45.08 3.86
2666 3073 0.457035 CCCGCCAACATCCAAATCTG 59.543 55.000 0.00 0.00 0.00 2.90
2667 3074 0.331278 TCCCGCCAACATCCAAATCT 59.669 50.000 0.00 0.00 0.00 2.40
2668 3075 1.181786 TTCCCGCCAACATCCAAATC 58.818 50.000 0.00 0.00 0.00 2.17
2669 3076 1.481772 CATTCCCGCCAACATCCAAAT 59.518 47.619 0.00 0.00 0.00 2.32
2670 3077 0.894141 CATTCCCGCCAACATCCAAA 59.106 50.000 0.00 0.00 0.00 3.28
2699 3106 0.596859 GGTATAGAAGACGTGGCCGC 60.597 60.000 6.11 6.11 37.70 6.53
2711 3122 4.712051 ATGCCAAATGAGCAGGTATAGA 57.288 40.909 0.00 0.00 44.90 1.98
2712 3123 4.581824 ACAATGCCAAATGAGCAGGTATAG 59.418 41.667 0.00 0.00 44.90 1.31
2717 3128 2.754946 AACAATGCCAAATGAGCAGG 57.245 45.000 0.00 0.00 44.90 4.85
2734 3145 5.163963 CCATTTGGCATTTTCGAAGCTTAAC 60.164 40.000 0.00 0.00 0.00 2.01
2760 3171 7.856556 TGATTTTGAAGTTTTTAAATTCGGCC 58.143 30.769 0.00 0.00 0.00 6.13
2830 3246 9.657419 CACACATGTATATTATATCTTCAGGCA 57.343 33.333 0.00 0.00 0.00 4.75
2846 3262 7.389330 TCGACCTGAAAATTTACACACATGTAT 59.611 33.333 0.00 0.00 41.02 2.29
2847 3263 6.706716 TCGACCTGAAAATTTACACACATGTA 59.293 34.615 0.00 0.00 40.48 2.29
2849 3265 5.996219 TCGACCTGAAAATTTACACACATG 58.004 37.500 0.00 0.00 0.00 3.21
2851 3267 6.438259 TTTCGACCTGAAAATTTACACACA 57.562 33.333 0.00 0.00 43.46 3.72
2867 3283 7.368480 TGTAGCTTTTTAAGGTATTTCGACC 57.632 36.000 0.00 0.00 42.74 4.79
2868 3284 9.911980 GTATGTAGCTTTTTAAGGTATTTCGAC 57.088 33.333 0.00 0.00 42.74 4.20
2869 3285 9.656040 TGTATGTAGCTTTTTAAGGTATTTCGA 57.344 29.630 0.00 0.00 42.74 3.71
2888 3304 9.632807 GGCACATATTTGTTTCTTTTGTATGTA 57.367 29.630 0.00 0.00 32.34 2.29
2889 3305 8.367156 AGGCACATATTTGTTTCTTTTGTATGT 58.633 29.630 0.00 0.00 32.34 2.29
2890 3306 8.761575 AGGCACATATTTGTTTCTTTTGTATG 57.238 30.769 0.00 0.00 32.34 2.39
2891 3307 9.777297 AAAGGCACATATTTGTTTCTTTTGTAT 57.223 25.926 7.39 0.00 34.49 2.29
2892 3308 9.606631 AAAAGGCACATATTTGTTTCTTTTGTA 57.393 25.926 17.41 0.00 40.35 2.41
2893 3309 8.504812 AAAAGGCACATATTTGTTTCTTTTGT 57.495 26.923 17.41 4.10 40.35 2.83
2896 3312 8.773645 GCTAAAAAGGCACATATTTGTTTCTTT 58.226 29.630 7.39 7.39 37.22 2.52
2897 3313 7.930865 TGCTAAAAAGGCACATATTTGTTTCTT 59.069 29.630 0.00 0.00 34.56 2.52
2898 3314 7.441017 TGCTAAAAAGGCACATATTTGTTTCT 58.559 30.769 0.00 0.00 34.56 2.52
2899 3315 7.650834 TGCTAAAAAGGCACATATTTGTTTC 57.349 32.000 0.00 0.00 34.56 2.78
2900 3316 9.889128 ATATGCTAAAAAGGCACATATTTGTTT 57.111 25.926 0.00 0.00 42.69 2.83
2901 3317 9.316730 CATATGCTAAAAAGGCACATATTTGTT 57.683 29.630 0.00 0.00 42.69 2.83
2902 3318 8.477256 ACATATGCTAAAAAGGCACATATTTGT 58.523 29.630 1.58 0.00 42.69 2.83
2903 3319 8.876275 ACATATGCTAAAAAGGCACATATTTG 57.124 30.769 1.58 0.00 42.69 2.32
2907 3323 9.130661 ACAATACATATGCTAAAAAGGCACATA 57.869 29.630 1.58 0.00 42.69 2.29
2908 3324 8.010733 ACAATACATATGCTAAAAAGGCACAT 57.989 30.769 1.58 0.00 42.69 3.21
2909 3325 7.403312 ACAATACATATGCTAAAAAGGCACA 57.597 32.000 1.58 0.00 42.69 4.57
2910 3326 7.973388 TGAACAATACATATGCTAAAAAGGCAC 59.027 33.333 1.58 0.00 42.69 5.01
2911 3327 8.060931 TGAACAATACATATGCTAAAAAGGCA 57.939 30.769 1.58 0.00 44.05 4.75
2912 3328 9.185192 GATGAACAATACATATGCTAAAAAGGC 57.815 33.333 1.58 0.00 0.00 4.35
2913 3329 9.683069 GGATGAACAATACATATGCTAAAAAGG 57.317 33.333 1.58 0.00 0.00 3.11
2916 3332 9.625747 TGAGGATGAACAATACATATGCTAAAA 57.374 29.630 1.58 0.00 0.00 1.52
2917 3333 9.625747 TTGAGGATGAACAATACATATGCTAAA 57.374 29.630 1.58 0.00 0.00 1.85
2918 3334 9.625747 TTTGAGGATGAACAATACATATGCTAA 57.374 29.630 1.58 0.00 0.00 3.09
2919 3335 9.276590 CTTTGAGGATGAACAATACATATGCTA 57.723 33.333 1.58 0.00 0.00 3.49
2920 3336 7.776969 ACTTTGAGGATGAACAATACATATGCT 59.223 33.333 1.58 0.00 0.00 3.79
2921 3337 7.934457 ACTTTGAGGATGAACAATACATATGC 58.066 34.615 1.58 0.00 0.00 3.14
2924 3340 9.599866 CAGTACTTTGAGGATGAACAATACATA 57.400 33.333 0.00 0.00 0.00 2.29
2925 3341 7.554118 CCAGTACTTTGAGGATGAACAATACAT 59.446 37.037 0.00 0.00 0.00 2.29
2926 3342 6.878923 CCAGTACTTTGAGGATGAACAATACA 59.121 38.462 0.00 0.00 0.00 2.29
2927 3343 7.103641 TCCAGTACTTTGAGGATGAACAATAC 58.896 38.462 0.00 0.00 0.00 1.89
2928 3344 7.252612 TCCAGTACTTTGAGGATGAACAATA 57.747 36.000 0.00 0.00 0.00 1.90
2929 3345 6.126863 TCCAGTACTTTGAGGATGAACAAT 57.873 37.500 0.00 0.00 0.00 2.71
2930 3346 5.560722 TCCAGTACTTTGAGGATGAACAA 57.439 39.130 0.00 0.00 0.00 2.83
2931 3347 5.762179 ATCCAGTACTTTGAGGATGAACA 57.238 39.130 10.82 0.00 39.32 3.18
2932 3348 7.454260 AAAATCCAGTACTTTGAGGATGAAC 57.546 36.000 12.03 0.00 40.59 3.18
2963 3379 2.900122 TACTTTGAATTGCGAGCTGC 57.100 45.000 0.00 0.00 46.70 5.25
2964 3380 5.393124 TGAAATACTTTGAATTGCGAGCTG 58.607 37.500 0.00 0.00 0.00 4.24
2965 3381 5.627499 TGAAATACTTTGAATTGCGAGCT 57.373 34.783 0.00 0.00 0.00 4.09
2966 3382 6.749118 AGAATGAAATACTTTGAATTGCGAGC 59.251 34.615 0.00 0.00 0.00 5.03
2967 3383 9.773328 TTAGAATGAAATACTTTGAATTGCGAG 57.227 29.630 0.00 0.00 0.00 5.03
2991 3407 9.973450 AGCAATGTGTATGTGTGTAAAATTTTA 57.027 25.926 6.54 6.54 0.00 1.52
2992 3408 8.885494 AGCAATGTGTATGTGTGTAAAATTTT 57.115 26.923 8.75 8.75 0.00 1.82
2993 3409 8.885494 AAGCAATGTGTATGTGTGTAAAATTT 57.115 26.923 0.00 0.00 0.00 1.82
2994 3410 7.598493 GGAAGCAATGTGTATGTGTGTAAAATT 59.402 33.333 0.00 0.00 0.00 1.82
2995 3411 7.039784 AGGAAGCAATGTGTATGTGTGTAAAAT 60.040 33.333 0.00 0.00 0.00 1.82
2996 3412 6.264292 AGGAAGCAATGTGTATGTGTGTAAAA 59.736 34.615 0.00 0.00 0.00 1.52
2997 3413 5.767665 AGGAAGCAATGTGTATGTGTGTAAA 59.232 36.000 0.00 0.00 0.00 2.01
2998 3414 5.312895 AGGAAGCAATGTGTATGTGTGTAA 58.687 37.500 0.00 0.00 0.00 2.41
2999 3415 4.905429 AGGAAGCAATGTGTATGTGTGTA 58.095 39.130 0.00 0.00 0.00 2.90
3000 3416 3.754965 AGGAAGCAATGTGTATGTGTGT 58.245 40.909 0.00 0.00 0.00 3.72
3001 3417 4.022935 ACAAGGAAGCAATGTGTATGTGTG 60.023 41.667 0.00 0.00 0.00 3.82
3002 3418 4.022935 CACAAGGAAGCAATGTGTATGTGT 60.023 41.667 0.00 0.00 39.60 3.72
3003 3419 4.478699 CACAAGGAAGCAATGTGTATGTG 58.521 43.478 0.00 0.00 39.60 3.21
3004 3420 4.771590 CACAAGGAAGCAATGTGTATGT 57.228 40.909 0.00 0.00 39.60 2.29
3010 3426 4.036734 CACAAGTACACAAGGAAGCAATGT 59.963 41.667 0.00 0.00 0.00 2.71
3011 3427 4.036734 ACACAAGTACACAAGGAAGCAATG 59.963 41.667 0.00 0.00 0.00 2.82
3012 3428 4.207165 ACACAAGTACACAAGGAAGCAAT 58.793 39.130 0.00 0.00 0.00 3.56
3013 3429 3.616219 ACACAAGTACACAAGGAAGCAA 58.384 40.909 0.00 0.00 0.00 3.91
3014 3430 3.275617 ACACAAGTACACAAGGAAGCA 57.724 42.857 0.00 0.00 0.00 3.91
3015 3431 5.941948 AATACACAAGTACACAAGGAAGC 57.058 39.130 0.00 0.00 31.96 3.86
3016 3432 8.402472 TGAAAAATACACAAGTACACAAGGAAG 58.598 33.333 0.00 0.00 31.96 3.46
3017 3433 8.282455 TGAAAAATACACAAGTACACAAGGAA 57.718 30.769 0.00 0.00 31.96 3.36
3018 3434 7.867305 TGAAAAATACACAAGTACACAAGGA 57.133 32.000 0.00 0.00 31.96 3.36
3019 3435 8.918961 TTTGAAAAATACACAAGTACACAAGG 57.081 30.769 0.00 0.00 31.96 3.61
3021 3437 9.915629 AGTTTTGAAAAATACACAAGTACACAA 57.084 25.926 0.00 0.00 31.96 3.33
3022 3438 9.915629 AAGTTTTGAAAAATACACAAGTACACA 57.084 25.926 0.00 0.00 31.96 3.72
3027 3443 9.495572 TCCAAAAGTTTTGAAAAATACACAAGT 57.504 25.926 26.36 0.00 0.00 3.16
3031 3447 9.549509 GGTTTCCAAAAGTTTTGAAAAATACAC 57.450 29.630 26.36 9.63 34.78 2.90
3032 3448 8.443937 CGGTTTCCAAAAGTTTTGAAAAATACA 58.556 29.630 26.36 0.00 34.78 2.29
3033 3449 8.657729 TCGGTTTCCAAAAGTTTTGAAAAATAC 58.342 29.630 26.36 19.00 34.78 1.89
3034 3450 8.773404 TCGGTTTCCAAAAGTTTTGAAAAATA 57.227 26.923 26.36 13.56 34.78 1.40
3035 3451 7.674471 TCGGTTTCCAAAAGTTTTGAAAAAT 57.326 28.000 26.36 0.00 34.78 1.82
3036 3452 7.492352 TTCGGTTTCCAAAAGTTTTGAAAAA 57.508 28.000 26.36 21.28 34.78 1.94
3037 3453 7.492352 TTTCGGTTTCCAAAAGTTTTGAAAA 57.508 28.000 26.36 17.81 34.78 2.29
3038 3454 7.308049 CCTTTTCGGTTTCCAAAAGTTTTGAAA 60.308 33.333 26.36 20.13 37.74 2.69
3039 3455 6.147985 CCTTTTCGGTTTCCAAAAGTTTTGAA 59.852 34.615 26.36 16.32 37.74 2.69
3040 3456 5.639931 CCTTTTCGGTTTCCAAAAGTTTTGA 59.360 36.000 26.36 11.92 37.74 2.69
3041 3457 5.410132 ACCTTTTCGGTTTCCAAAAGTTTTG 59.590 36.000 19.48 19.48 46.37 2.44
3042 3458 5.553123 ACCTTTTCGGTTTCCAAAAGTTTT 58.447 33.333 0.00 0.00 46.37 2.43
3043 3459 5.155278 ACCTTTTCGGTTTCCAAAAGTTT 57.845 34.783 15.15 0.00 46.37 2.66
3044 3460 4.811969 ACCTTTTCGGTTTCCAAAAGTT 57.188 36.364 15.15 5.77 46.37 2.66
3056 3472 4.568152 ATTCAACACTCAACCTTTTCGG 57.432 40.909 0.00 0.00 39.35 4.30
3057 3473 6.885735 AAAATTCAACACTCAACCTTTTCG 57.114 33.333 0.00 0.00 0.00 3.46
3078 3494 5.280419 CCCATGGAGGCCTTATTTTCAAAAA 60.280 40.000 15.22 0.00 35.39 1.94
3079 3495 4.224818 CCCATGGAGGCCTTATTTTCAAAA 59.775 41.667 15.22 0.00 35.39 2.44
3080 3496 3.774216 CCCATGGAGGCCTTATTTTCAAA 59.226 43.478 15.22 0.00 35.39 2.69
3081 3497 3.373830 CCCATGGAGGCCTTATTTTCAA 58.626 45.455 15.22 0.00 35.39 2.69
3082 3498 3.030873 CCCATGGAGGCCTTATTTTCA 57.969 47.619 15.22 0.00 35.39 2.69
3093 3509 2.765807 AGACCGAGCCCATGGAGG 60.766 66.667 15.22 13.23 37.03 4.30
3094 3510 1.617018 TTGAGACCGAGCCCATGGAG 61.617 60.000 15.22 4.39 0.00 3.86
3095 3511 1.198094 TTTGAGACCGAGCCCATGGA 61.198 55.000 15.22 0.00 0.00 3.41
3096 3512 0.745845 CTTTGAGACCGAGCCCATGG 60.746 60.000 4.14 4.14 0.00 3.66
3097 3513 0.250234 TCTTTGAGACCGAGCCCATG 59.750 55.000 0.00 0.00 0.00 3.66
3098 3514 1.134280 CATCTTTGAGACCGAGCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
3099 3515 0.250234 CATCTTTGAGACCGAGCCCA 59.750 55.000 0.00 0.00 0.00 5.36
3100 3516 0.462759 CCATCTTTGAGACCGAGCCC 60.463 60.000 0.00 0.00 0.00 5.19
3101 3517 1.092345 GCCATCTTTGAGACCGAGCC 61.092 60.000 0.00 0.00 0.00 4.70
3102 3518 1.092345 GGCCATCTTTGAGACCGAGC 61.092 60.000 0.00 0.00 0.00 5.03
3103 3519 0.539051 AGGCCATCTTTGAGACCGAG 59.461 55.000 5.01 0.00 0.00 4.63
3104 3520 1.480954 GTAGGCCATCTTTGAGACCGA 59.519 52.381 5.01 0.00 0.00 4.69
3105 3521 1.482593 AGTAGGCCATCTTTGAGACCG 59.517 52.381 5.01 0.00 0.00 4.79
3106 3522 4.101741 ACATAGTAGGCCATCTTTGAGACC 59.898 45.833 18.62 0.00 0.00 3.85
3107 3523 5.283457 ACATAGTAGGCCATCTTTGAGAC 57.717 43.478 18.62 0.00 0.00 3.36
3108 3524 6.839134 TCTTACATAGTAGGCCATCTTTGAGA 59.161 38.462 18.62 11.78 0.00 3.27
3109 3525 7.055667 TCTTACATAGTAGGCCATCTTTGAG 57.944 40.000 18.62 10.27 0.00 3.02
3110 3526 7.432148 TTCTTACATAGTAGGCCATCTTTGA 57.568 36.000 18.62 5.67 0.00 2.69
3111 3527 7.770897 AGTTTCTTACATAGTAGGCCATCTTTG 59.229 37.037 5.01 10.51 0.00 2.77
3112 3528 7.862675 AGTTTCTTACATAGTAGGCCATCTTT 58.137 34.615 5.01 0.00 0.00 2.52
3113 3529 7.419172 GGAGTTTCTTACATAGTAGGCCATCTT 60.419 40.741 5.01 0.00 0.00 2.40
3114 3530 6.042208 GGAGTTTCTTACATAGTAGGCCATCT 59.958 42.308 5.01 5.08 0.00 2.90
3115 3531 6.224584 GGAGTTTCTTACATAGTAGGCCATC 58.775 44.000 5.01 0.00 0.00 3.51
3116 3532 5.071923 GGGAGTTTCTTACATAGTAGGCCAT 59.928 44.000 5.01 0.00 0.00 4.40
3117 3533 4.407945 GGGAGTTTCTTACATAGTAGGCCA 59.592 45.833 5.01 0.00 0.00 5.36
3118 3534 4.407945 TGGGAGTTTCTTACATAGTAGGCC 59.592 45.833 0.00 0.00 0.00 5.19
3119 3535 5.609533 TGGGAGTTTCTTACATAGTAGGC 57.390 43.478 0.00 0.00 0.00 3.93
3120 3536 8.101419 AGTTTTGGGAGTTTCTTACATAGTAGG 58.899 37.037 0.00 0.00 0.00 3.18
3123 3539 7.606839 GCTAGTTTTGGGAGTTTCTTACATAGT 59.393 37.037 0.00 0.00 0.00 2.12
3124 3540 7.606456 TGCTAGTTTTGGGAGTTTCTTACATAG 59.394 37.037 0.00 0.00 0.00 2.23
3125 3541 7.455058 TGCTAGTTTTGGGAGTTTCTTACATA 58.545 34.615 0.00 0.00 0.00 2.29
3126 3542 6.303839 TGCTAGTTTTGGGAGTTTCTTACAT 58.696 36.000 0.00 0.00 0.00 2.29
3127 3543 5.686753 TGCTAGTTTTGGGAGTTTCTTACA 58.313 37.500 0.00 0.00 0.00 2.41
3128 3544 5.334957 GCTGCTAGTTTTGGGAGTTTCTTAC 60.335 44.000 0.00 0.00 0.00 2.34
3129 3545 4.760204 GCTGCTAGTTTTGGGAGTTTCTTA 59.240 41.667 0.00 0.00 0.00 2.10
3130 3546 3.570125 GCTGCTAGTTTTGGGAGTTTCTT 59.430 43.478 0.00 0.00 0.00 2.52
3131 3547 3.149981 GCTGCTAGTTTTGGGAGTTTCT 58.850 45.455 0.00 0.00 0.00 2.52
3132 3548 2.095718 CGCTGCTAGTTTTGGGAGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
3133 3549 1.880027 CGCTGCTAGTTTTGGGAGTTT 59.120 47.619 0.00 0.00 0.00 2.66
3134 3550 1.523758 CGCTGCTAGTTTTGGGAGTT 58.476 50.000 0.00 0.00 0.00 3.01
3135 3551 0.321653 CCGCTGCTAGTTTTGGGAGT 60.322 55.000 0.00 0.00 0.00 3.85
3136 3552 0.036388 TCCGCTGCTAGTTTTGGGAG 60.036 55.000 0.00 0.00 0.00 4.30
3137 3553 0.036388 CTCCGCTGCTAGTTTTGGGA 60.036 55.000 0.00 0.00 0.00 4.37
3138 3554 0.321653 ACTCCGCTGCTAGTTTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
3139 3555 0.798776 CACTCCGCTGCTAGTTTTGG 59.201 55.000 0.00 0.00 0.00 3.28
3140 3556 0.798776 CCACTCCGCTGCTAGTTTTG 59.201 55.000 0.00 0.00 0.00 2.44
3141 3557 0.321653 CCCACTCCGCTGCTAGTTTT 60.322 55.000 0.00 0.00 0.00 2.43
3142 3558 1.192146 TCCCACTCCGCTGCTAGTTT 61.192 55.000 0.00 0.00 0.00 2.66
3143 3559 1.609501 TCCCACTCCGCTGCTAGTT 60.610 57.895 0.00 0.00 0.00 2.24
3144 3560 2.037367 TCCCACTCCGCTGCTAGT 59.963 61.111 0.00 0.00 0.00 2.57
3145 3561 2.496817 GTCCCACTCCGCTGCTAG 59.503 66.667 0.00 0.00 0.00 3.42
3146 3562 3.449227 CGTCCCACTCCGCTGCTA 61.449 66.667 0.00 0.00 0.00 3.49
3152 3568 2.389866 GATAGTCGCGTCCCACTCCG 62.390 65.000 5.77 0.00 0.00 4.63
3153 3569 1.359475 GATAGTCGCGTCCCACTCC 59.641 63.158 5.77 0.00 0.00 3.85
3154 3570 1.359475 GGATAGTCGCGTCCCACTC 59.641 63.158 5.77 0.00 0.00 3.51
3155 3571 2.478890 CGGATAGTCGCGTCCCACT 61.479 63.158 5.77 4.46 0.00 4.00
3156 3572 2.025727 CGGATAGTCGCGTCCCAC 59.974 66.667 5.77 0.00 0.00 4.61
3157 3573 3.214123 CCGGATAGTCGCGTCCCA 61.214 66.667 5.77 0.00 0.00 4.37
3158 3574 4.642542 GCCGGATAGTCGCGTCCC 62.643 72.222 5.05 0.00 0.00 4.46
3159 3575 4.977126 CGCCGGATAGTCGCGTCC 62.977 72.222 5.05 4.43 0.00 4.79
3160 3576 3.459378 TTCGCCGGATAGTCGCGTC 62.459 63.158 5.05 0.00 33.79 5.19
3161 3577 3.511595 TTCGCCGGATAGTCGCGT 61.512 61.111 5.05 0.00 33.79 6.01
3162 3578 3.022914 GTTCGCCGGATAGTCGCG 61.023 66.667 5.05 0.00 0.00 5.87
3163 3579 2.657620 GGTTCGCCGGATAGTCGC 60.658 66.667 5.05 0.00 0.00 5.19
3484 3900 2.434185 TCGCTCACACGGCCATTC 60.434 61.111 2.24 0.00 0.00 2.67
3485 3901 2.742372 GTCGCTCACACGGCCATT 60.742 61.111 2.24 0.00 0.00 3.16
3486 3902 3.529341 TTGTCGCTCACACGGCCAT 62.529 57.895 2.24 0.00 36.67 4.40
3487 3903 4.228567 TTGTCGCTCACACGGCCA 62.229 61.111 2.24 0.00 36.67 5.36
3488 3904 3.712881 GTTGTCGCTCACACGGCC 61.713 66.667 0.00 0.00 36.67 6.13
3489 3905 2.430080 CTTGTTGTCGCTCACACGGC 62.430 60.000 0.00 0.00 38.39 5.68
3490 3906 0.874175 TCTTGTTGTCGCTCACACGG 60.874 55.000 0.00 0.00 33.41 4.94
3491 3907 0.927537 TTCTTGTTGTCGCTCACACG 59.072 50.000 0.00 0.00 33.41 4.49
3492 3908 2.201732 TCTTCTTGTTGTCGCTCACAC 58.798 47.619 0.00 0.00 33.41 3.82
3493 3909 2.595124 TCTTCTTGTTGTCGCTCACA 57.405 45.000 0.00 0.00 0.00 3.58
3494 3910 2.607635 TGTTCTTCTTGTTGTCGCTCAC 59.392 45.455 0.00 0.00 0.00 3.51
3495 3911 2.607635 GTGTTCTTCTTGTTGTCGCTCA 59.392 45.455 0.00 0.00 0.00 4.26
3496 3912 2.607635 TGTGTTCTTCTTGTTGTCGCTC 59.392 45.455 0.00 0.00 0.00 5.03
3497 3913 2.351726 GTGTGTTCTTCTTGTTGTCGCT 59.648 45.455 0.00 0.00 0.00 4.93
3498 3914 2.351726 AGTGTGTTCTTCTTGTTGTCGC 59.648 45.455 0.00 0.00 0.00 5.19
3499 3915 3.301835 CGAGTGTGTTCTTCTTGTTGTCG 60.302 47.826 0.00 0.00 0.00 4.35
3500 3916 3.544244 GCGAGTGTGTTCTTCTTGTTGTC 60.544 47.826 0.00 0.00 0.00 3.18
3501 3917 2.351726 GCGAGTGTGTTCTTCTTGTTGT 59.648 45.455 0.00 0.00 0.00 3.32
3502 3918 2.597505 CGCGAGTGTGTTCTTCTTGTTG 60.598 50.000 0.00 0.00 0.00 3.33
3503 3919 1.593006 CGCGAGTGTGTTCTTCTTGTT 59.407 47.619 0.00 0.00 0.00 2.83
3504 3920 1.209128 CGCGAGTGTGTTCTTCTTGT 58.791 50.000 0.00 0.00 0.00 3.16
3505 3921 0.111089 GCGCGAGTGTGTTCTTCTTG 60.111 55.000 12.10 0.00 0.00 3.02
3506 3922 1.222115 GGCGCGAGTGTGTTCTTCTT 61.222 55.000 12.10 0.00 0.00 2.52
3507 3923 1.664965 GGCGCGAGTGTGTTCTTCT 60.665 57.895 12.10 0.00 0.00 2.85
3508 3924 1.495584 TTGGCGCGAGTGTGTTCTTC 61.496 55.000 12.10 0.00 0.00 2.87
3509 3925 1.522806 TTGGCGCGAGTGTGTTCTT 60.523 52.632 12.10 0.00 0.00 2.52
3510 3926 2.108157 TTGGCGCGAGTGTGTTCT 59.892 55.556 12.10 0.00 0.00 3.01
3511 3927 1.841663 ATGTTGGCGCGAGTGTGTTC 61.842 55.000 12.10 0.00 0.00 3.18
3512 3928 1.841663 GATGTTGGCGCGAGTGTGTT 61.842 55.000 12.10 0.00 0.00 3.32
3513 3929 2.280797 ATGTTGGCGCGAGTGTGT 60.281 55.556 12.10 0.00 0.00 3.72
3514 3930 2.476051 GATGTTGGCGCGAGTGTG 59.524 61.111 12.10 0.00 0.00 3.82
3515 3931 3.112075 CGATGTTGGCGCGAGTGT 61.112 61.111 12.10 0.00 0.00 3.55
3516 3932 4.505217 GCGATGTTGGCGCGAGTG 62.505 66.667 12.10 0.00 45.27 3.51
3522 3938 1.226660 GGAATTGGCGATGTTGGCG 60.227 57.895 0.00 0.00 37.19 5.69
3523 3939 1.889454 TGGAATTGGCGATGTTGGC 59.111 52.632 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.