Multiple sequence alignment - TraesCS5A01G449200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G449200 chr5A 100.000 2845 0 0 1 2845 631462660 631465504 0.000000e+00 5254.0
1 TraesCS5A01G449200 chr5A 78.934 394 47 15 1567 1944 699208662 699209035 4.740000e-58 235.0
2 TraesCS5A01G449200 chr5A 97.826 46 0 1 342 387 631462947 631462991 8.450000e-11 78.7
3 TraesCS5A01G449200 chr5A 97.826 46 0 1 288 332 631463001 631463046 8.450000e-11 78.7
4 TraesCS5A01G449200 chr5B 86.397 963 77 27 1460 2389 631786922 631787863 0.000000e+00 1003.0
5 TraesCS5A01G449200 chr5B 79.737 533 53 37 921 1426 631786423 631786927 4.540000e-88 335.0
6 TraesCS5A01G449200 chr5B 82.410 415 32 20 342 724 631785699 631786104 9.830000e-85 324.0
7 TraesCS5A01G449200 chr5B 90.000 60 5 1 142 200 631783331 631783390 3.040000e-10 76.8
8 TraesCS5A01G449200 chr5B 100.000 37 0 0 764 800 631786123 631786159 5.090000e-08 69.4
9 TraesCS5A01G449200 chr5D 84.135 624 42 23 1531 2137 502874581 502875164 4.140000e-153 551.0
10 TraesCS5A01G449200 chr5D 81.172 563 33 30 921 1425 502873973 502874520 4.450000e-103 385.0
11 TraesCS5A01G449200 chr5D 82.857 385 32 15 342 705 502873400 502873771 5.920000e-82 315.0
12 TraesCS5A01G449200 chr5D 89.147 258 17 6 2232 2487 502875165 502875413 7.650000e-81 311.0
13 TraesCS5A01G449200 chr5D 87.387 111 3 5 803 911 502873829 502873930 1.790000e-22 117.0
14 TraesCS5A01G449200 chr5D 100.000 37 0 0 764 800 502873766 502873802 5.090000e-08 69.4
15 TraesCS5A01G449200 chr2D 93.269 104 7 0 1512 1615 38517097 38516994 1.360000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G449200 chr5A 631462660 631465504 2844 False 1803.80 5254 98.550667 1 2845 3 chr5A.!!$F2 2844
1 TraesCS5A01G449200 chr5B 631783331 631787863 4532 False 361.64 1003 87.708800 142 2389 5 chr5B.!!$F1 2247
2 TraesCS5A01G449200 chr5D 502873400 502875413 2013 False 291.40 551 87.449667 342 2487 6 chr5D.!!$F1 2145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 3015 0.179097 GGCCAAAACCTCGTTGCAAA 60.179 50.0 0.0 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 4693 0.040646 TTCTAGAGGCCTTCCGGACA 59.959 55.0 6.77 0.0 42.67 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.081554 AGAGGGCATGGTGTGGTC 58.918 61.111 0.00 0.00 0.00 4.02
18 19 2.436646 GAGGGCATGGTGTGGTCG 60.437 66.667 0.00 0.00 0.00 4.79
19 20 3.976701 GAGGGCATGGTGTGGTCGG 62.977 68.421 0.00 0.00 0.00 4.79
20 21 4.344865 GGGCATGGTGTGGTCGGT 62.345 66.667 0.00 0.00 0.00 4.69
21 22 2.282180 GGCATGGTGTGGTCGGTT 60.282 61.111 0.00 0.00 0.00 4.44
22 23 2.625823 GGCATGGTGTGGTCGGTTG 61.626 63.158 0.00 0.00 0.00 3.77
23 24 1.599518 GCATGGTGTGGTCGGTTGA 60.600 57.895 0.00 0.00 0.00 3.18
24 25 1.169661 GCATGGTGTGGTCGGTTGAA 61.170 55.000 0.00 0.00 0.00 2.69
25 26 1.533625 CATGGTGTGGTCGGTTGAAT 58.466 50.000 0.00 0.00 0.00 2.57
26 27 1.885887 CATGGTGTGGTCGGTTGAATT 59.114 47.619 0.00 0.00 0.00 2.17
27 28 2.932855 TGGTGTGGTCGGTTGAATTA 57.067 45.000 0.00 0.00 0.00 1.40
28 29 2.496111 TGGTGTGGTCGGTTGAATTAC 58.504 47.619 0.00 0.00 0.00 1.89
29 30 2.105134 TGGTGTGGTCGGTTGAATTACT 59.895 45.455 0.00 0.00 0.00 2.24
30 31 2.482721 GGTGTGGTCGGTTGAATTACTG 59.517 50.000 0.00 0.00 0.00 2.74
31 32 3.395639 GTGTGGTCGGTTGAATTACTGA 58.604 45.455 0.00 0.00 0.00 3.41
32 33 3.810941 GTGTGGTCGGTTGAATTACTGAA 59.189 43.478 0.00 0.00 35.31 3.02
33 34 4.273969 GTGTGGTCGGTTGAATTACTGAAA 59.726 41.667 0.00 0.00 35.31 2.69
34 35 4.882427 TGTGGTCGGTTGAATTACTGAAAA 59.118 37.500 0.00 0.00 35.31 2.29
35 36 5.008217 TGTGGTCGGTTGAATTACTGAAAAG 59.992 40.000 0.00 0.00 35.31 2.27
36 37 4.517453 TGGTCGGTTGAATTACTGAAAAGG 59.483 41.667 0.00 0.00 35.31 3.11
37 38 4.758165 GGTCGGTTGAATTACTGAAAAGGA 59.242 41.667 0.00 0.00 35.31 3.36
38 39 5.239963 GGTCGGTTGAATTACTGAAAAGGAA 59.760 40.000 0.00 0.00 35.31 3.36
39 40 6.140786 GTCGGTTGAATTACTGAAAAGGAAC 58.859 40.000 0.00 0.00 35.31 3.62
40 41 5.823570 TCGGTTGAATTACTGAAAAGGAACA 59.176 36.000 0.00 0.00 30.66 3.18
41 42 6.488683 TCGGTTGAATTACTGAAAAGGAACAT 59.511 34.615 0.00 0.00 30.66 2.71
42 43 7.662258 TCGGTTGAATTACTGAAAAGGAACATA 59.338 33.333 0.00 0.00 30.66 2.29
43 44 8.293867 CGGTTGAATTACTGAAAAGGAACATAA 58.706 33.333 0.00 0.00 0.00 1.90
44 45 9.974980 GGTTGAATTACTGAAAAGGAACATAAA 57.025 29.630 0.00 0.00 0.00 1.40
46 47 9.974980 TTGAATTACTGAAAAGGAACATAAACC 57.025 29.630 0.00 0.00 0.00 3.27
47 48 8.581578 TGAATTACTGAAAAGGAACATAAACCC 58.418 33.333 0.00 0.00 0.00 4.11
48 49 8.721133 AATTACTGAAAAGGAACATAAACCCT 57.279 30.769 0.00 0.00 0.00 4.34
49 50 8.721133 ATTACTGAAAAGGAACATAAACCCTT 57.279 30.769 0.00 0.00 41.70 3.95
51 52 7.050970 ACTGAAAAGGAACATAAACCCTTTC 57.949 36.000 0.00 0.00 46.29 2.62
52 53 6.839134 ACTGAAAAGGAACATAAACCCTTTCT 59.161 34.615 0.00 0.00 46.29 2.52
53 54 7.344612 ACTGAAAAGGAACATAAACCCTTTCTT 59.655 33.333 0.00 0.00 46.29 2.52
54 55 7.722363 TGAAAAGGAACATAAACCCTTTCTTC 58.278 34.615 0.00 0.00 46.29 2.87
55 56 5.959618 AAGGAACATAAACCCTTTCTTCG 57.040 39.130 0.00 0.00 36.98 3.79
56 57 4.332828 AGGAACATAAACCCTTTCTTCGG 58.667 43.478 0.00 0.00 0.00 4.30
57 58 4.077108 GGAACATAAACCCTTTCTTCGGT 58.923 43.478 0.00 0.00 0.00 4.69
58 59 5.013391 AGGAACATAAACCCTTTCTTCGGTA 59.987 40.000 0.00 0.00 0.00 4.02
59 60 5.122869 GGAACATAAACCCTTTCTTCGGTAC 59.877 44.000 0.00 0.00 0.00 3.34
72 73 3.909662 GGTACGGTAGCGAGGTGA 58.090 61.111 22.88 0.00 0.00 4.02
73 74 1.726265 GGTACGGTAGCGAGGTGAG 59.274 63.158 22.88 0.00 0.00 3.51
74 75 1.722636 GGTACGGTAGCGAGGTGAGG 61.723 65.000 22.88 0.00 0.00 3.86
75 76 1.452651 TACGGTAGCGAGGTGAGGG 60.453 63.158 22.88 0.00 0.00 4.30
76 77 4.208686 CGGTAGCGAGGTGAGGGC 62.209 72.222 9.07 0.00 0.00 5.19
77 78 4.208686 GGTAGCGAGGTGAGGGCG 62.209 72.222 0.00 0.00 0.00 6.13
78 79 3.450115 GTAGCGAGGTGAGGGCGT 61.450 66.667 0.00 0.00 0.00 5.68
79 80 3.449227 TAGCGAGGTGAGGGCGTG 61.449 66.667 0.00 0.00 0.00 5.34
89 90 4.753662 AGGGCGTGGCGAGGAGTA 62.754 66.667 0.00 0.00 0.00 2.59
90 91 4.208686 GGGCGTGGCGAGGAGTAG 62.209 72.222 0.00 0.00 0.00 2.57
91 92 4.874977 GGCGTGGCGAGGAGTAGC 62.875 72.222 0.00 0.00 0.00 3.58
93 94 3.812019 CGTGGCGAGGAGTAGCGT 61.812 66.667 0.00 0.00 0.00 5.07
94 95 2.202623 GTGGCGAGGAGTAGCGTG 60.203 66.667 0.00 0.00 0.00 5.34
95 96 2.675423 TGGCGAGGAGTAGCGTGT 60.675 61.111 0.00 0.00 0.00 4.49
96 97 2.102553 GGCGAGGAGTAGCGTGTC 59.897 66.667 0.00 0.00 0.00 3.67
97 98 2.408241 GGCGAGGAGTAGCGTGTCT 61.408 63.158 0.00 0.00 0.00 3.41
98 99 1.507174 GCGAGGAGTAGCGTGTCTT 59.493 57.895 0.00 0.00 0.00 3.01
99 100 0.798771 GCGAGGAGTAGCGTGTCTTG 60.799 60.000 0.00 0.00 0.00 3.02
100 101 0.803117 CGAGGAGTAGCGTGTCTTGA 59.197 55.000 0.00 0.00 0.00 3.02
101 102 1.402259 CGAGGAGTAGCGTGTCTTGAT 59.598 52.381 0.00 0.00 0.00 2.57
102 103 2.792890 CGAGGAGTAGCGTGTCTTGATG 60.793 54.545 0.00 0.00 0.00 3.07
103 104 2.423892 GAGGAGTAGCGTGTCTTGATGA 59.576 50.000 0.00 0.00 0.00 2.92
104 105 3.027412 AGGAGTAGCGTGTCTTGATGAT 58.973 45.455 0.00 0.00 0.00 2.45
105 106 3.119291 GGAGTAGCGTGTCTTGATGATG 58.881 50.000 0.00 0.00 0.00 3.07
106 107 3.429547 GGAGTAGCGTGTCTTGATGATGT 60.430 47.826 0.00 0.00 0.00 3.06
107 108 4.202020 GGAGTAGCGTGTCTTGATGATGTA 60.202 45.833 0.00 0.00 0.00 2.29
108 109 4.926244 AGTAGCGTGTCTTGATGATGTAG 58.074 43.478 0.00 0.00 0.00 2.74
109 110 3.876274 AGCGTGTCTTGATGATGTAGT 57.124 42.857 0.00 0.00 0.00 2.73
110 111 4.193826 AGCGTGTCTTGATGATGTAGTT 57.806 40.909 0.00 0.00 0.00 2.24
111 112 3.928992 AGCGTGTCTTGATGATGTAGTTG 59.071 43.478 0.00 0.00 0.00 3.16
112 113 3.679980 GCGTGTCTTGATGATGTAGTTGT 59.320 43.478 0.00 0.00 0.00 3.32
113 114 4.862574 GCGTGTCTTGATGATGTAGTTGTA 59.137 41.667 0.00 0.00 0.00 2.41
114 115 5.347635 GCGTGTCTTGATGATGTAGTTGTAA 59.652 40.000 0.00 0.00 0.00 2.41
115 116 6.128661 GCGTGTCTTGATGATGTAGTTGTAAA 60.129 38.462 0.00 0.00 0.00 2.01
127 128 1.334160 GTTGTAAACTTGGGTGGGGG 58.666 55.000 0.00 0.00 45.32 5.40
128 129 0.470268 TTGTAAACTTGGGTGGGGGC 60.470 55.000 0.00 0.00 0.00 5.80
129 130 1.154221 GTAAACTTGGGTGGGGGCA 59.846 57.895 0.00 0.00 0.00 5.36
130 131 0.252057 GTAAACTTGGGTGGGGGCAT 60.252 55.000 0.00 0.00 0.00 4.40
131 132 0.489567 TAAACTTGGGTGGGGGCATT 59.510 50.000 0.00 0.00 0.00 3.56
132 133 0.835971 AAACTTGGGTGGGGGCATTC 60.836 55.000 0.00 0.00 0.00 2.67
133 134 1.739608 AACTTGGGTGGGGGCATTCT 61.740 55.000 0.00 0.00 0.00 2.40
134 135 1.079073 CTTGGGTGGGGGCATTCTT 59.921 57.895 0.00 0.00 0.00 2.52
135 136 0.545071 CTTGGGTGGGGGCATTCTTT 60.545 55.000 0.00 0.00 0.00 2.52
136 137 0.835543 TTGGGTGGGGGCATTCTTTG 60.836 55.000 0.00 0.00 0.00 2.77
137 138 1.078347 GGGTGGGGGCATTCTTTGA 59.922 57.895 0.00 0.00 0.00 2.69
138 139 0.325577 GGGTGGGGGCATTCTTTGAT 60.326 55.000 0.00 0.00 0.00 2.57
139 140 1.571955 GGTGGGGGCATTCTTTGATT 58.428 50.000 0.00 0.00 0.00 2.57
140 141 1.207811 GGTGGGGGCATTCTTTGATTG 59.792 52.381 0.00 0.00 0.00 2.67
148 149 4.336433 GGGCATTCTTTGATTGATTCGAGA 59.664 41.667 0.00 0.00 0.00 4.04
152 153 7.008992 GGCATTCTTTGATTGATTCGAGAAAAG 59.991 37.037 0.00 5.36 34.66 2.27
162 164 3.433709 TTCGAGAAAAGAAACGCGATG 57.566 42.857 15.93 0.00 38.01 3.84
164 166 1.201921 CGAGAAAAGAAACGCGATGGG 60.202 52.381 15.93 0.00 0.00 4.00
167 169 1.533731 GAAAAGAAACGCGATGGGTCA 59.466 47.619 15.93 0.00 0.00 4.02
218 2438 2.751166 ACCATTCTGACAAGGTCTCG 57.249 50.000 0.00 0.00 33.15 4.04
229 2449 1.878656 AAGGTCTCGTCCCTGCTTCG 61.879 60.000 0.00 0.00 30.99 3.79
234 2454 3.764466 CGTCCCTGCTTCGCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
236 2456 4.087892 TCCCTGCTTCGCCTCTGC 62.088 66.667 0.00 0.00 0.00 4.26
282 2502 2.790468 CGAATCCGGTGACTCGAGTAAC 60.790 54.545 22.99 22.99 42.53 2.50
283 2503 1.101331 ATCCGGTGACTCGAGTAACC 58.899 55.000 34.37 34.37 44.60 2.85
290 2510 4.504858 GGTGACTCGAGTAACCAAATCAT 58.495 43.478 37.50 5.35 46.80 2.45
291 2511 4.330074 GGTGACTCGAGTAACCAAATCATG 59.670 45.833 37.50 2.16 46.80 3.07
304 2524 4.459390 CAAATCATGGACCAATGAGCAA 57.541 40.909 0.00 0.00 39.84 3.91
305 2525 4.430007 CAAATCATGGACCAATGAGCAAG 58.570 43.478 0.00 0.00 39.84 4.01
306 2526 3.657398 ATCATGGACCAATGAGCAAGA 57.343 42.857 0.00 0.00 39.84 3.02
307 2527 2.995283 TCATGGACCAATGAGCAAGAG 58.005 47.619 0.00 0.00 32.75 2.85
308 2528 2.022195 CATGGACCAATGAGCAAGAGG 58.978 52.381 0.00 0.00 0.00 3.69
309 2529 0.322816 TGGACCAATGAGCAAGAGGC 60.323 55.000 0.00 0.00 45.30 4.70
322 2542 3.981211 GCAAGAGGCATTCAAAAAGTGA 58.019 40.909 0.00 0.00 43.97 3.41
324 2544 5.395546 AGCAAGAGGCATTCAAAAAGTGAAA 60.396 36.000 0.00 0.00 44.56 2.69
325 2545 6.853041 AGCAAGAGGCATTCAAAAAGTGAAAA 60.853 34.615 0.00 0.00 44.56 2.29
326 2546 8.276800 AGCAAGAGGCATTCAAAAAGTGAAAAA 61.277 33.333 0.00 0.00 44.56 1.94
359 2579 2.719739 AGTCATGGACCAATGAGCAAG 58.280 47.619 0.00 0.00 37.24 4.01
363 2583 0.322816 TGGACCAATGAGCAAGAGGC 60.323 55.000 0.00 0.00 45.30 4.70
376 2596 3.062042 GCAAGAGGCATTCAAAAAGTGG 58.938 45.455 0.00 0.00 43.97 4.00
422 2653 2.743928 GAACAGCCGGGACAGCAG 60.744 66.667 2.18 0.00 0.00 4.24
498 2730 1.852157 TTGACCACATGGCCTCCTCC 61.852 60.000 3.32 0.00 39.32 4.30
499 2731 1.997874 GACCACATGGCCTCCTCCT 60.998 63.158 3.32 0.00 39.32 3.69
511 2743 2.042464 CCTCCTCCTGCTGCTATGTTA 58.958 52.381 0.00 0.00 0.00 2.41
531 2783 2.840753 GGGGGTGCCAGAACCAAGA 61.841 63.158 0.00 0.00 42.47 3.02
541 2793 3.553095 GAACCAAGACAGCCGCCCT 62.553 63.158 0.00 0.00 0.00 5.19
544 2796 1.450312 CCAAGACAGCCGCCCTAAG 60.450 63.158 0.00 0.00 0.00 2.18
557 2810 2.942710 GCCCTAAGCGGAAAGAAAAAC 58.057 47.619 0.00 0.00 33.16 2.43
600 2853 3.576356 GATGACACGGCGGCCATG 61.576 66.667 20.71 17.64 0.00 3.66
738 2999 0.944386 ATGATTTGATACGTGCGGCC 59.056 50.000 0.00 0.00 0.00 6.13
739 3000 0.391793 TGATTTGATACGTGCGGCCA 60.392 50.000 2.24 0.00 0.00 5.36
740 3001 0.730265 GATTTGATACGTGCGGCCAA 59.270 50.000 2.24 0.00 0.00 4.52
741 3002 1.131504 GATTTGATACGTGCGGCCAAA 59.868 47.619 2.24 0.00 0.00 3.28
742 3003 0.952280 TTTGATACGTGCGGCCAAAA 59.048 45.000 2.24 0.00 0.00 2.44
743 3004 0.238817 TTGATACGTGCGGCCAAAAC 59.761 50.000 2.24 0.00 0.00 2.43
744 3005 1.135939 GATACGTGCGGCCAAAACC 59.864 57.895 2.24 0.00 0.00 3.27
745 3006 1.302993 ATACGTGCGGCCAAAACCT 60.303 52.632 2.24 0.00 0.00 3.50
746 3007 1.303091 ATACGTGCGGCCAAAACCTC 61.303 55.000 2.24 0.00 0.00 3.85
747 3008 4.383602 CGTGCGGCCAAAACCTCG 62.384 66.667 2.24 0.00 0.00 4.63
748 3009 3.284449 GTGCGGCCAAAACCTCGT 61.284 61.111 2.24 0.00 0.00 4.18
749 3010 2.517402 TGCGGCCAAAACCTCGTT 60.517 55.556 2.24 0.00 0.00 3.85
750 3011 2.050442 GCGGCCAAAACCTCGTTG 60.050 61.111 2.24 0.00 0.00 4.10
751 3012 2.050442 CGGCCAAAACCTCGTTGC 60.050 61.111 2.24 0.00 0.00 4.17
752 3013 2.840066 CGGCCAAAACCTCGTTGCA 61.840 57.895 2.24 0.00 0.00 4.08
753 3014 1.439644 GGCCAAAACCTCGTTGCAA 59.560 52.632 0.00 0.00 0.00 4.08
754 3015 0.179097 GGCCAAAACCTCGTTGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
755 3016 1.208259 GCCAAAACCTCGTTGCAAAG 58.792 50.000 0.00 2.46 0.00 2.77
756 3017 1.202359 GCCAAAACCTCGTTGCAAAGA 60.202 47.619 14.45 14.45 0.00 2.52
757 3018 2.545742 GCCAAAACCTCGTTGCAAAGAT 60.546 45.455 15.52 0.00 0.00 2.40
758 3019 3.052036 CCAAAACCTCGTTGCAAAGATG 58.948 45.455 15.52 14.81 0.00 2.90
759 3020 3.243367 CCAAAACCTCGTTGCAAAGATGA 60.243 43.478 20.71 7.92 0.00 2.92
760 3021 4.549458 CAAAACCTCGTTGCAAAGATGAT 58.451 39.130 20.71 9.13 0.00 2.45
761 3022 4.853924 AAACCTCGTTGCAAAGATGATT 57.146 36.364 20.71 13.86 0.00 2.57
762 3023 4.853924 AACCTCGTTGCAAAGATGATTT 57.146 36.364 20.71 6.27 0.00 2.17
803 3064 0.809241 TTGCAAAGCAAAGCAACCCG 60.809 50.000 0.00 0.00 45.96 5.28
804 3065 1.955663 GCAAAGCAAAGCAACCCGG 60.956 57.895 0.00 0.00 0.00 5.73
856 3200 2.125512 ACACCGGAGAAGCATCGC 60.126 61.111 9.46 0.00 0.00 4.58
882 3262 3.554692 CTTCGGCCGACACGCATC 61.555 66.667 31.19 0.00 0.00 3.91
883 3263 4.365505 TTCGGCCGACACGCATCA 62.366 61.111 31.19 7.76 0.00 3.07
884 3264 3.657448 TTCGGCCGACACGCATCAT 62.657 57.895 31.19 0.00 0.00 2.45
885 3265 3.928769 CGGCCGACACGCATCATG 61.929 66.667 24.07 0.00 0.00 3.07
886 3266 3.576356 GGCCGACACGCATCATGG 61.576 66.667 0.00 0.00 0.00 3.66
887 3267 4.241999 GCCGACACGCATCATGGC 62.242 66.667 0.00 0.00 35.04 4.40
889 3269 2.512286 CGACACGCATCATGGCCT 60.512 61.111 3.32 0.00 0.00 5.19
890 3270 1.227234 CGACACGCATCATGGCCTA 60.227 57.895 3.32 0.00 0.00 3.93
904 3284 2.913501 CCTACCGCCTTTACCCCC 59.086 66.667 0.00 0.00 0.00 5.40
938 3351 1.850441 CACGGCTATAAGTACACGCAC 59.150 52.381 0.00 0.00 0.00 5.34
982 3404 1.338200 CCACTTACCTGCTCCACTGTC 60.338 57.143 0.00 0.00 0.00 3.51
994 3416 1.446099 CACTGTCACCCGTCCATCG 60.446 63.158 0.00 0.00 39.52 3.84
995 3417 1.906824 ACTGTCACCCGTCCATCGT 60.907 57.895 0.00 0.00 37.94 3.73
1048 3470 1.520564 GTCACTCACCGTGCACACA 60.521 57.895 18.64 0.00 43.46 3.72
1049 3471 1.520564 TCACTCACCGTGCACACAC 60.521 57.895 18.64 0.00 43.46 3.82
1061 3484 2.936498 GTGCACACACACAGAAAGTAGT 59.064 45.455 13.17 0.00 46.61 2.73
1079 3502 2.900838 GAGCTCGTCGATCCGGGA 60.901 66.667 0.00 0.00 0.00 5.14
1147 3587 0.386113 GGTACGCTCACCCTCATCTC 59.614 60.000 0.00 0.00 31.91 2.75
1173 3630 3.729108 TGGAGAAGAGGATCCAAGATGT 58.271 45.455 15.82 0.00 42.61 3.06
1182 3639 4.738998 CCAAGATGTGGCCGGCCA 62.739 66.667 44.23 44.23 41.72 5.36
1195 3654 2.391389 CGGCCAGGCTTCGTTTCTC 61.391 63.158 12.43 0.00 0.00 2.87
1218 3677 4.507021 CGATCTTGATCTTGATGGTCTGTG 59.493 45.833 8.70 0.00 0.00 3.66
1220 3679 4.572909 TCTTGATCTTGATGGTCTGTGTG 58.427 43.478 0.00 0.00 0.00 3.82
1222 3681 4.356405 TGATCTTGATGGTCTGTGTGTT 57.644 40.909 0.00 0.00 0.00 3.32
1227 3686 2.296792 TGATGGTCTGTGTGTTGTTGG 58.703 47.619 0.00 0.00 0.00 3.77
1229 3688 1.745232 TGGTCTGTGTGTTGTTGGTC 58.255 50.000 0.00 0.00 0.00 4.02
1231 3690 2.297701 GGTCTGTGTGTTGTTGGTCAT 58.702 47.619 0.00 0.00 0.00 3.06
1232 3691 2.687935 GGTCTGTGTGTTGTTGGTCATT 59.312 45.455 0.00 0.00 0.00 2.57
1233 3692 3.130340 GGTCTGTGTGTTGTTGGTCATTT 59.870 43.478 0.00 0.00 0.00 2.32
1234 3693 4.336993 GGTCTGTGTGTTGTTGGTCATTTA 59.663 41.667 0.00 0.00 0.00 1.40
1235 3694 5.009610 GGTCTGTGTGTTGTTGGTCATTTAT 59.990 40.000 0.00 0.00 0.00 1.40
1236 3695 5.914635 GTCTGTGTGTTGTTGGTCATTTATG 59.085 40.000 0.00 0.00 0.00 1.90
1237 3696 5.592282 TCTGTGTGTTGTTGGTCATTTATGT 59.408 36.000 0.00 0.00 0.00 2.29
1238 3697 6.768381 TCTGTGTGTTGTTGGTCATTTATGTA 59.232 34.615 0.00 0.00 0.00 2.29
1242 3701 7.325821 GTGTGTTGTTGGTCATTTATGTATGTG 59.674 37.037 0.00 0.00 0.00 3.21
1360 3861 2.478539 CGAAGGCTGGTACGTACTTACC 60.479 54.545 24.07 19.17 41.89 2.85
1371 3873 2.232208 ACGTACTTACCACTTACCCTGC 59.768 50.000 0.00 0.00 0.00 4.85
1427 3929 0.034616 CTCATGATTCGGCTCCCTCC 59.965 60.000 0.00 0.00 0.00 4.30
1430 3932 1.414061 ATGATTCGGCTCCCTCCCTG 61.414 60.000 0.00 0.00 0.00 4.45
1431 3933 2.041265 ATTCGGCTCCCTCCCTGT 59.959 61.111 0.00 0.00 0.00 4.00
1433 3935 2.537714 ATTCGGCTCCCTCCCTGTCT 62.538 60.000 0.00 0.00 0.00 3.41
1434 3936 1.870941 TTCGGCTCCCTCCCTGTCTA 61.871 60.000 0.00 0.00 0.00 2.59
1435 3937 1.830408 CGGCTCCCTCCCTGTCTAG 60.830 68.421 0.00 0.00 0.00 2.43
1436 3938 2.137528 GGCTCCCTCCCTGTCTAGC 61.138 68.421 0.00 0.00 0.00 3.42
1437 3939 1.381872 GCTCCCTCCCTGTCTAGCA 60.382 63.158 0.00 0.00 0.00 3.49
1438 3940 1.681486 GCTCCCTCCCTGTCTAGCAC 61.681 65.000 0.00 0.00 0.00 4.40
1439 3941 0.324738 CTCCCTCCCTGTCTAGCACA 60.325 60.000 0.00 0.00 0.00 4.57
1440 3942 0.116342 TCCCTCCCTGTCTAGCACAA 59.884 55.000 0.00 0.00 33.31 3.33
1441 3943 0.539051 CCCTCCCTGTCTAGCACAAG 59.461 60.000 0.00 0.00 33.31 3.16
1442 3944 1.270907 CCTCCCTGTCTAGCACAAGT 58.729 55.000 0.00 0.00 33.31 3.16
1443 3945 2.457598 CCTCCCTGTCTAGCACAAGTA 58.542 52.381 0.00 0.00 33.31 2.24
1444 3946 2.428890 CCTCCCTGTCTAGCACAAGTAG 59.571 54.545 0.00 0.00 33.31 2.57
1445 3947 2.428890 CTCCCTGTCTAGCACAAGTAGG 59.571 54.545 0.00 0.00 33.31 3.18
1446 3948 1.134670 CCCTGTCTAGCACAAGTAGGC 60.135 57.143 0.00 0.00 33.31 3.93
1447 3949 1.827969 CCTGTCTAGCACAAGTAGGCT 59.172 52.381 0.00 0.00 43.94 4.58
1448 3950 3.024547 CCTGTCTAGCACAAGTAGGCTA 58.975 50.000 0.00 0.00 41.41 3.93
1462 3964 6.042208 ACAAGTAGGCTAGGATTATCAACTCC 59.958 42.308 0.00 0.00 0.00 3.85
1488 3990 5.429130 AGCTTAATTACTTCACCTAGCCAC 58.571 41.667 0.00 0.00 0.00 5.01
1507 4009 1.914634 CTGGTGATCAGCGTACTCAC 58.085 55.000 19.36 4.11 38.82 3.51
1508 4010 1.202348 CTGGTGATCAGCGTACTCACA 59.798 52.381 19.36 0.00 40.80 3.58
1509 4011 1.202348 TGGTGATCAGCGTACTCACAG 59.798 52.381 19.36 0.00 40.80 3.66
1510 4012 1.202582 GGTGATCAGCGTACTCACAGT 59.797 52.381 9.50 0.00 40.80 3.55
1528 4030 3.457234 CAGTACTCACTGTGTGCTTTCA 58.543 45.455 7.79 0.00 46.03 2.69
1621 4123 2.290916 TCATCTTCGTCGGCTAGATCAC 59.709 50.000 0.00 0.00 0.00 3.06
1624 4126 0.681887 TTCGTCGGCTAGATCACCCA 60.682 55.000 0.00 0.00 0.00 4.51
1625 4127 0.681887 TCGTCGGCTAGATCACCCAA 60.682 55.000 0.00 0.00 0.00 4.12
1677 4179 4.377841 GCTGTCAACTGTACAAAGAGATGC 60.378 45.833 0.00 0.00 0.00 3.91
1719 4221 3.307512 CACGTTGTTGCCACGCTATATAA 59.692 43.478 0.00 0.00 0.00 0.98
1720 4222 4.025229 CACGTTGTTGCCACGCTATATAAT 60.025 41.667 0.00 0.00 0.00 1.28
1721 4223 5.176039 CACGTTGTTGCCACGCTATATAATA 59.824 40.000 0.00 0.00 0.00 0.98
1722 4224 5.929992 ACGTTGTTGCCACGCTATATAATAT 59.070 36.000 0.00 0.00 0.00 1.28
1723 4225 7.062488 CACGTTGTTGCCACGCTATATAATATA 59.938 37.037 0.00 0.00 0.00 0.86
1724 4226 7.762615 ACGTTGTTGCCACGCTATATAATATAT 59.237 33.333 0.00 0.00 0.00 0.86
1725 4227 8.266682 CGTTGTTGCCACGCTATATAATATATC 58.733 37.037 0.00 0.00 0.00 1.63
1751 4266 9.810870 CATGATCTCTCTCCTCCATATATATGA 57.189 37.037 21.97 8.90 35.75 2.15
1753 4268 9.639563 TGATCTCTCTCCTCCATATATATGAAC 57.360 37.037 21.97 0.46 35.75 3.18
1760 4275 9.132923 TCTCCTCCATATATATGAACGTATTCC 57.867 37.037 21.97 0.00 35.75 3.01
1794 4312 3.413846 TCTCACTAGTCACTACGGTGT 57.586 47.619 0.00 0.00 43.41 4.16
1804 4322 1.302511 CTACGGTGTTGCCTGCCTT 60.303 57.895 0.00 0.00 34.25 4.35
1839 4361 7.573968 ATCCATCAGTAACAAAGGCTTTATC 57.426 36.000 12.95 3.78 0.00 1.75
1847 4369 9.167311 CAGTAACAAAGGCTTTATCATCTTACT 57.833 33.333 12.95 12.37 0.00 2.24
1868 4402 1.742268 GTCTCCATTTCCTCTGCTTGC 59.258 52.381 0.00 0.00 0.00 4.01
1869 4403 0.731417 CTCCATTTCCTCTGCTTGCG 59.269 55.000 0.00 0.00 0.00 4.85
1922 4456 5.151297 TCATTGTGCTCAGTAGTGATGAA 57.849 39.130 0.00 0.00 30.18 2.57
1924 4458 5.814188 TCATTGTGCTCAGTAGTGATGAATC 59.186 40.000 0.00 0.00 30.18 2.52
1940 4474 9.902684 AGTGATGAATCTGTGATTAATTCTTCT 57.097 29.630 0.00 0.00 35.87 2.85
1987 4521 2.184830 TGGATACGCGAGGGAGACG 61.185 63.158 15.93 0.00 42.51 4.18
2000 4539 0.170116 GGAGACGTCTCTGCACTGAG 59.830 60.000 36.98 0.00 42.48 3.35
2014 4553 0.037790 ACTGAGCGAGAGTGAAAGGC 60.038 55.000 0.00 0.00 0.00 4.35
2033 4572 3.487985 GCAACAACAATTTGCGAGAAC 57.512 42.857 0.00 0.00 40.01 3.01
2209 4754 5.405331 AACGTTCGAGAAAAAGGAAGAAG 57.595 39.130 0.00 0.00 0.00 2.85
2214 4759 6.238130 CGTTCGAGAAAAAGGAAGAAGAAACT 60.238 38.462 0.00 0.00 0.00 2.66
2237 4782 2.477825 CTGCCTTATCCGTGTGAGATG 58.522 52.381 0.00 0.00 0.00 2.90
2248 4794 2.288091 CGTGTGAGATGGCTCTGATAGG 60.288 54.545 0.00 0.00 41.84 2.57
2253 4799 0.037790 GATGGCTCTGATAGGGACGC 60.038 60.000 0.00 0.00 0.00 5.19
2261 4807 0.894184 TGATAGGGACGCCGGAGATC 60.894 60.000 13.83 4.42 0.00 2.75
2333 4879 2.125912 CCGAGGGAGCAGTTGACG 60.126 66.667 0.00 0.00 0.00 4.35
2420 4966 6.653989 AGAGTCTACGATGATTTTGGGAATT 58.346 36.000 0.00 0.00 0.00 2.17
2421 4967 6.763610 AGAGTCTACGATGATTTTGGGAATTC 59.236 38.462 0.00 0.00 0.00 2.17
2422 4968 5.823045 AGTCTACGATGATTTTGGGAATTCC 59.177 40.000 16.74 16.74 0.00 3.01
2423 4969 4.814234 TCTACGATGATTTTGGGAATTCCG 59.186 41.667 18.30 5.25 38.76 4.30
2424 4970 3.616219 ACGATGATTTTGGGAATTCCGA 58.384 40.909 18.30 12.07 38.76 4.55
2425 4971 4.207165 ACGATGATTTTGGGAATTCCGAT 58.793 39.130 18.30 9.32 38.76 4.18
2426 4972 5.373222 ACGATGATTTTGGGAATTCCGATA 58.627 37.500 18.30 6.97 38.76 2.92
2470 5016 5.329035 ACTTGCAAATTATTCCGCTCAAT 57.671 34.783 0.00 0.00 0.00 2.57
2477 5023 6.457257 GCAAATTATTCCGCTCAATGCAAAAT 60.457 34.615 0.00 0.00 43.06 1.82
2478 5024 7.254387 GCAAATTATTCCGCTCAATGCAAAATA 60.254 33.333 0.00 0.00 43.06 1.40
2482 5028 8.715191 TTATTCCGCTCAATGCAAAATAAAAT 57.285 26.923 0.00 0.00 43.06 1.82
2484 5030 8.715191 ATTCCGCTCAATGCAAAATAAAATAA 57.285 26.923 0.00 0.00 43.06 1.40
2487 5033 9.160496 TCCGCTCAATGCAAAATAAAATAAAAT 57.840 25.926 0.00 0.00 43.06 1.82
2488 5034 9.771915 CCGCTCAATGCAAAATAAAATAAAATT 57.228 25.926 0.00 0.00 43.06 1.82
2515 5061 2.025727 GCAAGCGCTCCATGATGC 59.974 61.111 12.06 12.74 34.30 3.91
2516 5062 2.478890 GCAAGCGCTCCATGATGCT 61.479 57.895 19.50 0.00 39.89 3.79
2517 5063 1.647629 CAAGCGCTCCATGATGCTC 59.352 57.895 12.06 0.00 36.49 4.26
2518 5064 1.886313 AAGCGCTCCATGATGCTCG 60.886 57.895 12.06 0.00 36.49 5.03
2519 5065 2.279717 GCGCTCCATGATGCTCGA 60.280 61.111 0.00 0.00 0.00 4.04
2520 5066 1.884464 GCGCTCCATGATGCTCGAA 60.884 57.895 0.00 0.00 0.00 3.71
2521 5067 1.431488 GCGCTCCATGATGCTCGAAA 61.431 55.000 0.00 0.00 0.00 3.46
2522 5068 1.224075 CGCTCCATGATGCTCGAAAT 58.776 50.000 0.00 0.00 0.00 2.17
2523 5069 1.600957 CGCTCCATGATGCTCGAAATT 59.399 47.619 0.00 0.00 0.00 1.82
2524 5070 2.032550 CGCTCCATGATGCTCGAAATTT 59.967 45.455 0.00 0.00 0.00 1.82
2525 5071 3.369385 GCTCCATGATGCTCGAAATTTG 58.631 45.455 0.00 0.00 0.00 2.32
2526 5072 3.065786 GCTCCATGATGCTCGAAATTTGA 59.934 43.478 0.00 0.00 0.00 2.69
2527 5073 4.439153 GCTCCATGATGCTCGAAATTTGAA 60.439 41.667 0.00 0.00 0.00 2.69
2528 5074 5.239359 TCCATGATGCTCGAAATTTGAAG 57.761 39.130 0.00 0.00 0.00 3.02
2529 5075 4.943093 TCCATGATGCTCGAAATTTGAAGA 59.057 37.500 0.00 0.00 0.00 2.87
2530 5076 5.591472 TCCATGATGCTCGAAATTTGAAGAT 59.409 36.000 0.00 0.00 0.00 2.40
2531 5077 5.913514 CCATGATGCTCGAAATTTGAAGATC 59.086 40.000 0.00 0.00 0.00 2.75
2532 5078 5.490139 TGATGCTCGAAATTTGAAGATCC 57.510 39.130 0.00 0.00 0.00 3.36
2533 5079 4.336433 TGATGCTCGAAATTTGAAGATCCC 59.664 41.667 0.00 0.00 0.00 3.85
2534 5080 3.684908 TGCTCGAAATTTGAAGATCCCA 58.315 40.909 0.00 0.00 0.00 4.37
2535 5081 4.272489 TGCTCGAAATTTGAAGATCCCAT 58.728 39.130 0.00 0.00 0.00 4.00
2536 5082 5.436175 TGCTCGAAATTTGAAGATCCCATA 58.564 37.500 0.00 0.00 0.00 2.74
2537 5083 5.885352 TGCTCGAAATTTGAAGATCCCATAA 59.115 36.000 0.00 0.00 0.00 1.90
2538 5084 6.183360 TGCTCGAAATTTGAAGATCCCATAAC 60.183 38.462 0.00 0.00 0.00 1.89
2539 5085 6.038714 GCTCGAAATTTGAAGATCCCATAACT 59.961 38.462 0.00 0.00 0.00 2.24
2540 5086 7.553881 TCGAAATTTGAAGATCCCATAACTC 57.446 36.000 0.00 0.00 0.00 3.01
2541 5087 7.109501 TCGAAATTTGAAGATCCCATAACTCA 58.890 34.615 0.00 0.00 0.00 3.41
2542 5088 7.280876 TCGAAATTTGAAGATCCCATAACTCAG 59.719 37.037 0.00 0.00 0.00 3.35
2543 5089 7.280876 CGAAATTTGAAGATCCCATAACTCAGA 59.719 37.037 0.00 0.00 0.00 3.27
2544 5090 9.129532 GAAATTTGAAGATCCCATAACTCAGAT 57.870 33.333 0.00 0.00 0.00 2.90
2545 5091 9.484806 AAATTTGAAGATCCCATAACTCAGATT 57.515 29.630 0.00 0.00 0.00 2.40
2546 5092 9.484806 AATTTGAAGATCCCATAACTCAGATTT 57.515 29.630 0.00 0.00 0.00 2.17
2547 5093 8.884124 TTTGAAGATCCCATAACTCAGATTTT 57.116 30.769 0.00 0.00 0.00 1.82
2548 5094 7.870509 TGAAGATCCCATAACTCAGATTTTG 57.129 36.000 0.00 0.00 0.00 2.44
2549 5095 7.632861 TGAAGATCCCATAACTCAGATTTTGA 58.367 34.615 0.00 0.00 0.00 2.69
2550 5096 8.108999 TGAAGATCCCATAACTCAGATTTTGAA 58.891 33.333 0.00 0.00 34.81 2.69
2551 5097 8.884124 AAGATCCCATAACTCAGATTTTGAAA 57.116 30.769 0.00 0.00 34.81 2.69
2552 5098 8.884124 AGATCCCATAACTCAGATTTTGAAAA 57.116 30.769 0.00 0.00 34.81 2.29
2553 5099 9.312904 AGATCCCATAACTCAGATTTTGAAAAA 57.687 29.630 0.00 0.00 34.81 1.94
2588 5134 7.969536 ACACATACACATTTAGGATATGCTC 57.030 36.000 0.00 0.00 0.00 4.26
2589 5135 7.739825 ACACATACACATTTAGGATATGCTCT 58.260 34.615 0.00 0.00 0.00 4.09
2590 5136 8.870116 ACACATACACATTTAGGATATGCTCTA 58.130 33.333 0.00 0.00 0.00 2.43
2591 5137 9.144747 CACATACACATTTAGGATATGCTCTAC 57.855 37.037 0.00 0.00 0.00 2.59
2592 5138 8.870116 ACATACACATTTAGGATATGCTCTACA 58.130 33.333 0.00 0.00 0.00 2.74
2593 5139 9.710900 CATACACATTTAGGATATGCTCTACAA 57.289 33.333 0.00 0.00 0.00 2.41
2594 5140 9.935241 ATACACATTTAGGATATGCTCTACAAG 57.065 33.333 0.00 0.00 0.00 3.16
2595 5141 7.796054 ACACATTTAGGATATGCTCTACAAGT 58.204 34.615 0.00 0.00 0.00 3.16
2596 5142 7.712639 ACACATTTAGGATATGCTCTACAAGTG 59.287 37.037 0.00 6.48 0.00 3.16
2597 5143 7.712639 CACATTTAGGATATGCTCTACAAGTGT 59.287 37.037 0.00 0.04 0.00 3.55
2598 5144 7.712639 ACATTTAGGATATGCTCTACAAGTGTG 59.287 37.037 0.00 0.00 0.00 3.82
2599 5145 7.418337 TTTAGGATATGCTCTACAAGTGTGA 57.582 36.000 0.00 0.00 0.00 3.58
2600 5146 5.939764 AGGATATGCTCTACAAGTGTGAA 57.060 39.130 0.00 0.00 0.00 3.18
2601 5147 5.911752 AGGATATGCTCTACAAGTGTGAAG 58.088 41.667 0.00 0.00 0.00 3.02
2602 5148 5.658634 AGGATATGCTCTACAAGTGTGAAGA 59.341 40.000 0.00 0.00 0.00 2.87
2603 5149 5.982516 GGATATGCTCTACAAGTGTGAAGAG 59.017 44.000 6.81 6.81 38.79 2.85
2604 5150 4.881019 ATGCTCTACAAGTGTGAAGAGT 57.119 40.909 11.19 0.00 38.18 3.24
2605 5151 4.672587 TGCTCTACAAGTGTGAAGAGTT 57.327 40.909 11.19 0.00 38.18 3.01
2606 5152 4.621991 TGCTCTACAAGTGTGAAGAGTTC 58.378 43.478 11.19 0.13 38.18 3.01
2607 5153 3.991121 GCTCTACAAGTGTGAAGAGTTCC 59.009 47.826 11.19 0.00 38.18 3.62
2608 5154 4.501571 GCTCTACAAGTGTGAAGAGTTCCA 60.502 45.833 11.19 0.00 38.18 3.53
2609 5155 5.788450 CTCTACAAGTGTGAAGAGTTCCAT 58.212 41.667 3.89 0.00 32.54 3.41
2610 5156 5.541845 TCTACAAGTGTGAAGAGTTCCATG 58.458 41.667 0.00 0.00 0.00 3.66
2611 5157 4.422073 ACAAGTGTGAAGAGTTCCATGA 57.578 40.909 0.00 0.00 0.00 3.07
2612 5158 4.978099 ACAAGTGTGAAGAGTTCCATGAT 58.022 39.130 0.00 0.00 0.00 2.45
2613 5159 4.758674 ACAAGTGTGAAGAGTTCCATGATG 59.241 41.667 0.00 0.00 0.00 3.07
2614 5160 4.897509 AGTGTGAAGAGTTCCATGATGA 57.102 40.909 0.00 0.00 0.00 2.92
2615 5161 5.233083 AGTGTGAAGAGTTCCATGATGAA 57.767 39.130 0.00 0.00 0.00 2.57
2616 5162 5.624159 AGTGTGAAGAGTTCCATGATGAAA 58.376 37.500 0.00 0.00 0.00 2.69
2617 5163 6.243900 AGTGTGAAGAGTTCCATGATGAAAT 58.756 36.000 0.00 0.00 0.00 2.17
2618 5164 7.397221 AGTGTGAAGAGTTCCATGATGAAATA 58.603 34.615 0.00 0.00 0.00 1.40
2619 5165 7.335422 AGTGTGAAGAGTTCCATGATGAAATAC 59.665 37.037 0.00 0.00 0.00 1.89
2620 5166 7.119699 GTGTGAAGAGTTCCATGATGAAATACA 59.880 37.037 0.00 0.00 0.00 2.29
2621 5167 7.830697 TGTGAAGAGTTCCATGATGAAATACAT 59.169 33.333 0.00 0.00 42.47 2.29
2622 5168 8.680903 GTGAAGAGTTCCATGATGAAATACATT 58.319 33.333 0.00 0.00 39.56 2.71
2623 5169 9.904198 TGAAGAGTTCCATGATGAAATACATTA 57.096 29.630 0.00 0.00 39.56 1.90
2644 5190 9.845740 ACATTATATGATGTAGGCTACACAAAA 57.154 29.630 28.40 20.22 42.23 2.44
2670 5216 8.638685 AAGACATAATCATGCATTTTTAGCAC 57.361 30.769 0.00 0.00 45.95 4.40
2671 5217 7.774134 AGACATAATCATGCATTTTTAGCACA 58.226 30.769 0.00 0.00 45.95 4.57
2672 5218 8.418662 AGACATAATCATGCATTTTTAGCACAT 58.581 29.630 0.00 0.00 45.95 3.21
2673 5219 8.360325 ACATAATCATGCATTTTTAGCACATG 57.640 30.769 0.00 0.00 45.95 3.21
2674 5220 7.982919 ACATAATCATGCATTTTTAGCACATGT 59.017 29.630 0.00 0.00 45.95 3.21
2675 5221 9.465985 CATAATCATGCATTTTTAGCACATGTA 57.534 29.630 0.00 0.00 45.95 2.29
2676 5222 7.760131 AATCATGCATTTTTAGCACATGTAC 57.240 32.000 0.00 0.00 45.95 2.90
2677 5223 6.513806 TCATGCATTTTTAGCACATGTACT 57.486 33.333 3.59 3.59 45.95 2.73
2678 5224 6.554419 TCATGCATTTTTAGCACATGTACTC 58.446 36.000 0.66 0.00 45.95 2.59
2679 5225 6.375174 TCATGCATTTTTAGCACATGTACTCT 59.625 34.615 0.66 0.88 45.95 3.24
2680 5226 6.573664 TGCATTTTTAGCACATGTACTCTT 57.426 33.333 0.66 0.00 37.02 2.85
2681 5227 6.611381 TGCATTTTTAGCACATGTACTCTTC 58.389 36.000 0.66 0.00 37.02 2.87
2682 5228 6.206438 TGCATTTTTAGCACATGTACTCTTCA 59.794 34.615 0.66 0.00 37.02 3.02
2683 5229 6.524586 GCATTTTTAGCACATGTACTCTTCAC 59.475 38.462 0.66 0.00 0.00 3.18
2684 5230 7.573843 GCATTTTTAGCACATGTACTCTTCACT 60.574 37.037 0.66 0.00 0.00 3.41
2685 5231 8.935844 CATTTTTAGCACATGTACTCTTCACTA 58.064 33.333 0.66 0.00 0.00 2.74
2686 5232 9.672673 ATTTTTAGCACATGTACTCTTCACTAT 57.327 29.630 0.66 0.00 0.00 2.12
2688 5234 9.803315 TTTTAGCACATGTACTCTTCACTATAG 57.197 33.333 0.66 0.00 0.00 1.31
2689 5235 8.747538 TTAGCACATGTACTCTTCACTATAGA 57.252 34.615 6.78 0.00 0.00 1.98
2690 5236 7.646548 AGCACATGTACTCTTCACTATAGAA 57.353 36.000 6.78 0.00 0.00 2.10
2691 5237 8.067751 AGCACATGTACTCTTCACTATAGAAA 57.932 34.615 6.78 0.00 0.00 2.52
2692 5238 8.700051 AGCACATGTACTCTTCACTATAGAAAT 58.300 33.333 6.78 0.00 0.00 2.17
2693 5239 9.319143 GCACATGTACTCTTCACTATAGAAATT 57.681 33.333 6.78 0.00 0.00 1.82
2721 5267 9.905171 ATGATTTTCTTTTCTCTTTTGTAGCTC 57.095 29.630 0.00 0.00 0.00 4.09
2722 5268 8.902806 TGATTTTCTTTTCTCTTTTGTAGCTCA 58.097 29.630 0.00 0.00 0.00 4.26
2723 5269 9.175060 GATTTTCTTTTCTCTTTTGTAGCTCAC 57.825 33.333 0.00 0.00 0.00 3.51
2724 5270 7.624360 TTTCTTTTCTCTTTTGTAGCTCACA 57.376 32.000 0.00 0.00 34.51 3.58
2725 5271 7.807977 TTCTTTTCTCTTTTGTAGCTCACAT 57.192 32.000 0.00 0.00 36.90 3.21
2726 5272 8.902540 TTCTTTTCTCTTTTGTAGCTCACATA 57.097 30.769 0.00 0.00 36.90 2.29
2727 5273 8.902540 TCTTTTCTCTTTTGTAGCTCACATAA 57.097 30.769 0.00 0.00 36.90 1.90
2728 5274 8.774586 TCTTTTCTCTTTTGTAGCTCACATAAC 58.225 33.333 0.00 0.00 36.90 1.89
2729 5275 8.445275 TTTTCTCTTTTGTAGCTCACATAACA 57.555 30.769 0.00 0.00 36.90 2.41
2730 5276 8.445275 TTTCTCTTTTGTAGCTCACATAACAA 57.555 30.769 0.00 0.00 36.90 2.83
2731 5277 7.421530 TCTCTTTTGTAGCTCACATAACAAC 57.578 36.000 0.00 0.00 36.90 3.32
2732 5278 7.217200 TCTCTTTTGTAGCTCACATAACAACT 58.783 34.615 0.00 0.00 36.90 3.16
2733 5279 7.715249 TCTCTTTTGTAGCTCACATAACAACTT 59.285 33.333 0.00 0.00 36.90 2.66
2734 5280 8.896320 TCTTTTGTAGCTCACATAACAACTTA 57.104 30.769 0.00 0.00 36.90 2.24
2735 5281 9.502091 TCTTTTGTAGCTCACATAACAACTTAT 57.498 29.630 0.00 0.00 36.90 1.73
2762 5308 9.985730 ATCATCATGAAAATTTACACACTTTGT 57.014 25.926 0.00 0.00 42.84 2.83
2766 5312 9.944663 TCATGAAAATTTACACACTTTGTAGAC 57.055 29.630 0.00 0.00 41.86 2.59
2767 5313 9.729023 CATGAAAATTTACACACTTTGTAGACA 57.271 29.630 0.00 0.00 41.86 3.41
2769 5315 9.562583 TGAAAATTTACACACTTTGTAGACAAC 57.437 29.630 0.00 0.00 41.86 3.32
2770 5316 9.562583 GAAAATTTACACACTTTGTAGACAACA 57.437 29.630 0.00 0.00 41.86 3.33
2772 5318 9.730420 AAATTTACACACTTTGTAGACAACATC 57.270 29.630 0.00 0.00 41.86 3.06
2773 5319 6.854496 TTACACACTTTGTAGACAACATCC 57.146 37.500 0.00 0.00 41.86 3.51
2774 5320 4.134563 ACACACTTTGTAGACAACATCCC 58.865 43.478 0.00 0.00 38.10 3.85
2775 5321 4.141482 ACACACTTTGTAGACAACATCCCT 60.141 41.667 0.00 0.00 38.10 4.20
2776 5322 5.071250 ACACACTTTGTAGACAACATCCCTA 59.929 40.000 0.00 0.00 38.10 3.53
2777 5323 6.173339 CACACTTTGTAGACAACATCCCTAT 58.827 40.000 0.00 0.00 38.10 2.57
2778 5324 6.092670 CACACTTTGTAGACAACATCCCTATG 59.907 42.308 0.00 0.00 38.10 2.23
2780 5326 6.092670 CACTTTGTAGACAACATCCCTATGTG 59.907 42.308 0.00 0.00 45.79 3.21
2781 5327 4.137116 TGTAGACAACATCCCTATGTGC 57.863 45.455 0.00 0.00 45.79 4.57
2782 5328 3.774766 TGTAGACAACATCCCTATGTGCT 59.225 43.478 0.00 0.00 45.79 4.40
2783 5329 4.225042 TGTAGACAACATCCCTATGTGCTT 59.775 41.667 0.00 0.00 45.79 3.91
2784 5330 3.614092 AGACAACATCCCTATGTGCTTG 58.386 45.455 0.00 0.00 45.79 4.01
2785 5331 3.009473 AGACAACATCCCTATGTGCTTGT 59.991 43.478 0.00 0.00 45.79 3.16
2786 5332 3.084039 ACAACATCCCTATGTGCTTGTG 58.916 45.455 0.00 0.00 45.79 3.33
2787 5333 1.755179 ACATCCCTATGTGCTTGTGC 58.245 50.000 0.00 0.00 44.79 4.57
2788 5334 1.004628 ACATCCCTATGTGCTTGTGCA 59.995 47.619 0.00 0.00 44.79 4.57
2801 5347 5.512753 TGCTTGTGCATCTTTTACAGAAA 57.487 34.783 0.00 0.00 45.31 2.52
2802 5348 6.088016 TGCTTGTGCATCTTTTACAGAAAT 57.912 33.333 0.00 0.00 45.31 2.17
2803 5349 6.514947 TGCTTGTGCATCTTTTACAGAAATT 58.485 32.000 0.00 0.00 45.31 1.82
2804 5350 6.985645 TGCTTGTGCATCTTTTACAGAAATTT 59.014 30.769 0.00 0.00 45.31 1.82
2805 5351 7.495279 TGCTTGTGCATCTTTTACAGAAATTTT 59.505 29.630 0.00 0.00 45.31 1.82
2806 5352 8.337532 GCTTGTGCATCTTTTACAGAAATTTTT 58.662 29.630 0.00 0.00 39.41 1.94
2807 5353 9.640974 CTTGTGCATCTTTTACAGAAATTTTTG 57.359 29.630 7.15 7.15 34.16 2.44
2808 5354 8.140677 TGTGCATCTTTTACAGAAATTTTTGG 57.859 30.769 12.83 0.00 34.16 3.28
2809 5355 7.984050 TGTGCATCTTTTACAGAAATTTTTGGA 59.016 29.630 12.83 1.46 34.16 3.53
2810 5356 8.825745 GTGCATCTTTTACAGAAATTTTTGGAA 58.174 29.630 12.83 7.88 34.16 3.53
2811 5357 8.825745 TGCATCTTTTACAGAAATTTTTGGAAC 58.174 29.630 12.83 0.00 34.16 3.62
2812 5358 9.045223 GCATCTTTTACAGAAATTTTTGGAACT 57.955 29.630 12.83 0.00 34.16 3.01
2821 5367 9.230122 ACAGAAATTTTTGGAACTTCAAAATGT 57.770 25.926 12.83 3.12 43.42 2.71
2822 5368 9.493206 CAGAAATTTTTGGAACTTCAAAATGTG 57.507 29.630 0.76 0.00 43.42 3.21
2823 5369 9.447157 AGAAATTTTTGGAACTTCAAAATGTGA 57.553 25.926 4.01 0.00 43.42 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.959484 CGACCACACCATGCCCTCT 61.959 63.158 0.00 0.00 0.00 3.69
1 2 2.436646 CGACCACACCATGCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
2 3 4.033776 CCGACCACACCATGCCCT 62.034 66.667 0.00 0.00 0.00 5.19
3 4 3.860930 AACCGACCACACCATGCCC 62.861 63.158 0.00 0.00 0.00 5.36
4 5 2.282180 AACCGACCACACCATGCC 60.282 61.111 0.00 0.00 0.00 4.40
5 6 1.169661 TTCAACCGACCACACCATGC 61.170 55.000 0.00 0.00 0.00 4.06
6 7 1.533625 ATTCAACCGACCACACCATG 58.466 50.000 0.00 0.00 0.00 3.66
7 8 2.286365 AATTCAACCGACCACACCAT 57.714 45.000 0.00 0.00 0.00 3.55
8 9 2.105134 AGTAATTCAACCGACCACACCA 59.895 45.455 0.00 0.00 0.00 4.17
9 10 2.482721 CAGTAATTCAACCGACCACACC 59.517 50.000 0.00 0.00 0.00 4.16
10 11 3.395639 TCAGTAATTCAACCGACCACAC 58.604 45.455 0.00 0.00 0.00 3.82
11 12 3.755112 TCAGTAATTCAACCGACCACA 57.245 42.857 0.00 0.00 0.00 4.17
12 13 5.427036 TTTTCAGTAATTCAACCGACCAC 57.573 39.130 0.00 0.00 0.00 4.16
13 14 4.517453 CCTTTTCAGTAATTCAACCGACCA 59.483 41.667 0.00 0.00 0.00 4.02
14 15 4.758165 TCCTTTTCAGTAATTCAACCGACC 59.242 41.667 0.00 0.00 0.00 4.79
15 16 5.934935 TCCTTTTCAGTAATTCAACCGAC 57.065 39.130 0.00 0.00 0.00 4.79
16 17 5.823570 TGTTCCTTTTCAGTAATTCAACCGA 59.176 36.000 0.00 0.00 0.00 4.69
17 18 6.067263 TGTTCCTTTTCAGTAATTCAACCG 57.933 37.500 0.00 0.00 0.00 4.44
18 19 9.974980 TTTATGTTCCTTTTCAGTAATTCAACC 57.025 29.630 0.00 0.00 0.00 3.77
20 21 9.974980 GGTTTATGTTCCTTTTCAGTAATTCAA 57.025 29.630 0.00 0.00 0.00 2.69
21 22 8.581578 GGGTTTATGTTCCTTTTCAGTAATTCA 58.418 33.333 0.00 0.00 0.00 2.57
22 23 8.803235 AGGGTTTATGTTCCTTTTCAGTAATTC 58.197 33.333 0.00 0.00 0.00 2.17
23 24 8.721133 AGGGTTTATGTTCCTTTTCAGTAATT 57.279 30.769 0.00 0.00 0.00 1.40
24 25 8.721133 AAGGGTTTATGTTCCTTTTCAGTAAT 57.279 30.769 0.00 0.00 37.60 1.89
25 26 8.541899 AAAGGGTTTATGTTCCTTTTCAGTAA 57.458 30.769 0.00 0.00 45.46 2.24
33 34 4.765339 CCGAAGAAAGGGTTTATGTTCCTT 59.235 41.667 0.00 0.00 42.16 3.36
34 35 4.202535 ACCGAAGAAAGGGTTTATGTTCCT 60.203 41.667 0.00 0.00 30.73 3.36
35 36 4.077108 ACCGAAGAAAGGGTTTATGTTCC 58.923 43.478 0.00 0.00 30.73 3.62
36 37 5.163923 CGTACCGAAGAAAGGGTTTATGTTC 60.164 44.000 0.00 0.00 37.75 3.18
37 38 4.692155 CGTACCGAAGAAAGGGTTTATGTT 59.308 41.667 0.00 0.00 37.75 2.71
38 39 4.248058 CGTACCGAAGAAAGGGTTTATGT 58.752 43.478 0.00 0.00 37.75 2.29
39 40 3.619929 CCGTACCGAAGAAAGGGTTTATG 59.380 47.826 0.00 0.00 37.75 1.90
40 41 3.261643 ACCGTACCGAAGAAAGGGTTTAT 59.738 43.478 0.00 0.00 37.75 1.40
41 42 2.632512 ACCGTACCGAAGAAAGGGTTTA 59.367 45.455 0.00 0.00 37.75 2.01
42 43 1.417517 ACCGTACCGAAGAAAGGGTTT 59.582 47.619 0.00 0.00 37.75 3.27
43 44 1.051008 ACCGTACCGAAGAAAGGGTT 58.949 50.000 0.00 0.00 37.75 4.11
44 45 1.821136 CTACCGTACCGAAGAAAGGGT 59.179 52.381 0.00 0.00 40.35 4.34
45 46 1.470458 GCTACCGTACCGAAGAAAGGG 60.470 57.143 0.00 0.00 0.00 3.95
46 47 1.796617 CGCTACCGTACCGAAGAAAGG 60.797 57.143 0.00 0.00 0.00 3.11
47 48 1.131126 TCGCTACCGTACCGAAGAAAG 59.869 52.381 0.00 0.00 35.54 2.62
48 49 1.131126 CTCGCTACCGTACCGAAGAAA 59.869 52.381 0.00 0.00 35.54 2.52
49 50 0.729116 CTCGCTACCGTACCGAAGAA 59.271 55.000 0.00 0.00 35.54 2.52
50 51 1.091771 CCTCGCTACCGTACCGAAGA 61.092 60.000 0.00 0.00 35.54 2.87
51 52 1.354506 CCTCGCTACCGTACCGAAG 59.645 63.158 0.00 0.00 35.54 3.79
52 53 1.377202 ACCTCGCTACCGTACCGAA 60.377 57.895 0.00 0.00 35.54 4.30
53 54 2.108514 CACCTCGCTACCGTACCGA 61.109 63.158 0.00 0.00 35.54 4.69
54 55 2.044832 CTCACCTCGCTACCGTACCG 62.045 65.000 0.00 0.00 35.54 4.02
55 56 1.722636 CCTCACCTCGCTACCGTACC 61.723 65.000 0.00 0.00 35.54 3.34
56 57 1.722636 CCCTCACCTCGCTACCGTAC 61.723 65.000 0.00 0.00 35.54 3.67
57 58 1.452651 CCCTCACCTCGCTACCGTA 60.453 63.158 0.00 0.00 35.54 4.02
58 59 2.754658 CCCTCACCTCGCTACCGT 60.755 66.667 0.00 0.00 35.54 4.83
59 60 4.208686 GCCCTCACCTCGCTACCG 62.209 72.222 0.00 0.00 0.00 4.02
60 61 4.208686 CGCCCTCACCTCGCTACC 62.209 72.222 0.00 0.00 0.00 3.18
61 62 3.450115 ACGCCCTCACCTCGCTAC 61.450 66.667 0.00 0.00 0.00 3.58
62 63 3.449227 CACGCCCTCACCTCGCTA 61.449 66.667 0.00 0.00 0.00 4.26
72 73 4.753662 TACTCCTCGCCACGCCCT 62.754 66.667 0.00 0.00 0.00 5.19
73 74 4.208686 CTACTCCTCGCCACGCCC 62.209 72.222 0.00 0.00 0.00 6.13
74 75 4.874977 GCTACTCCTCGCCACGCC 62.875 72.222 0.00 0.00 0.00 5.68
76 77 3.812019 ACGCTACTCCTCGCCACG 61.812 66.667 0.00 0.00 0.00 4.94
77 78 2.202623 CACGCTACTCCTCGCCAC 60.203 66.667 0.00 0.00 0.00 5.01
78 79 2.675423 ACACGCTACTCCTCGCCA 60.675 61.111 0.00 0.00 0.00 5.69
79 80 1.935327 AAGACACGCTACTCCTCGCC 61.935 60.000 0.00 0.00 0.00 5.54
80 81 0.798771 CAAGACACGCTACTCCTCGC 60.799 60.000 0.00 0.00 0.00 5.03
81 82 0.803117 TCAAGACACGCTACTCCTCG 59.197 55.000 0.00 0.00 0.00 4.63
82 83 2.423892 TCATCAAGACACGCTACTCCTC 59.576 50.000 0.00 0.00 0.00 3.71
83 84 2.447443 TCATCAAGACACGCTACTCCT 58.553 47.619 0.00 0.00 0.00 3.69
84 85 2.941453 TCATCAAGACACGCTACTCC 57.059 50.000 0.00 0.00 0.00 3.85
85 86 3.775202 ACATCATCAAGACACGCTACTC 58.225 45.455 0.00 0.00 0.00 2.59
86 87 3.876274 ACATCATCAAGACACGCTACT 57.124 42.857 0.00 0.00 0.00 2.57
87 88 4.673441 ACTACATCATCAAGACACGCTAC 58.327 43.478 0.00 0.00 0.00 3.58
88 89 4.983671 ACTACATCATCAAGACACGCTA 57.016 40.909 0.00 0.00 0.00 4.26
89 90 3.876274 ACTACATCATCAAGACACGCT 57.124 42.857 0.00 0.00 0.00 5.07
90 91 3.679980 ACAACTACATCATCAAGACACGC 59.320 43.478 0.00 0.00 0.00 5.34
91 92 6.944557 TTACAACTACATCATCAAGACACG 57.055 37.500 0.00 0.00 0.00 4.49
92 93 8.311650 AGTTTACAACTACATCATCAAGACAC 57.688 34.615 0.00 0.00 40.69 3.67
93 94 8.773645 CAAGTTTACAACTACATCATCAAGACA 58.226 33.333 0.00 0.00 41.91 3.41
94 95 8.230486 CCAAGTTTACAACTACATCATCAAGAC 58.770 37.037 0.00 0.00 41.91 3.01
95 96 7.390440 CCCAAGTTTACAACTACATCATCAAGA 59.610 37.037 0.00 0.00 41.91 3.02
96 97 7.174946 ACCCAAGTTTACAACTACATCATCAAG 59.825 37.037 0.00 0.00 41.91 3.02
97 98 7.001674 ACCCAAGTTTACAACTACATCATCAA 58.998 34.615 0.00 0.00 41.91 2.57
98 99 6.429692 CACCCAAGTTTACAACTACATCATCA 59.570 38.462 0.00 0.00 41.91 3.07
99 100 6.128007 CCACCCAAGTTTACAACTACATCATC 60.128 42.308 0.00 0.00 41.91 2.92
100 101 5.710099 CCACCCAAGTTTACAACTACATCAT 59.290 40.000 0.00 0.00 41.91 2.45
101 102 5.067273 CCACCCAAGTTTACAACTACATCA 58.933 41.667 0.00 0.00 41.91 3.07
102 103 4.457949 CCCACCCAAGTTTACAACTACATC 59.542 45.833 0.00 0.00 41.91 3.06
103 104 4.403734 CCCACCCAAGTTTACAACTACAT 58.596 43.478 0.00 0.00 41.91 2.29
104 105 3.435313 CCCCACCCAAGTTTACAACTACA 60.435 47.826 0.00 0.00 41.91 2.74
105 106 3.151554 CCCCACCCAAGTTTACAACTAC 58.848 50.000 0.00 0.00 41.91 2.73
106 107 2.108601 CCCCCACCCAAGTTTACAACTA 59.891 50.000 0.00 0.00 41.91 2.24
107 108 1.133294 CCCCCACCCAAGTTTACAACT 60.133 52.381 0.00 0.00 45.46 3.16
108 109 1.334160 CCCCCACCCAAGTTTACAAC 58.666 55.000 0.00 0.00 0.00 3.32
109 110 0.470268 GCCCCCACCCAAGTTTACAA 60.470 55.000 0.00 0.00 0.00 2.41
110 111 1.154221 GCCCCCACCCAAGTTTACA 59.846 57.895 0.00 0.00 0.00 2.41
111 112 0.252057 ATGCCCCCACCCAAGTTTAC 60.252 55.000 0.00 0.00 0.00 2.01
112 113 0.489567 AATGCCCCCACCCAAGTTTA 59.510 50.000 0.00 0.00 0.00 2.01
113 114 0.835971 GAATGCCCCCACCCAAGTTT 60.836 55.000 0.00 0.00 0.00 2.66
114 115 1.229177 GAATGCCCCCACCCAAGTT 60.229 57.895 0.00 0.00 0.00 2.66
115 116 1.739608 AAGAATGCCCCCACCCAAGT 61.740 55.000 0.00 0.00 0.00 3.16
116 117 0.545071 AAAGAATGCCCCCACCCAAG 60.545 55.000 0.00 0.00 0.00 3.61
117 118 0.835543 CAAAGAATGCCCCCACCCAA 60.836 55.000 0.00 0.00 0.00 4.12
118 119 1.229145 CAAAGAATGCCCCCACCCA 60.229 57.895 0.00 0.00 0.00 4.51
119 120 0.325577 ATCAAAGAATGCCCCCACCC 60.326 55.000 0.00 0.00 0.00 4.61
120 121 1.207811 CAATCAAAGAATGCCCCCACC 59.792 52.381 0.00 0.00 0.00 4.61
121 122 2.178580 TCAATCAAAGAATGCCCCCAC 58.821 47.619 0.00 0.00 0.00 4.61
122 123 2.619697 TCAATCAAAGAATGCCCCCA 57.380 45.000 0.00 0.00 0.00 4.96
123 124 3.491447 CGAATCAATCAAAGAATGCCCCC 60.491 47.826 0.00 0.00 0.00 5.40
124 125 3.381272 TCGAATCAATCAAAGAATGCCCC 59.619 43.478 0.00 0.00 0.00 5.80
125 126 4.336433 TCTCGAATCAATCAAAGAATGCCC 59.664 41.667 0.00 0.00 0.00 5.36
126 127 5.490139 TCTCGAATCAATCAAAGAATGCC 57.510 39.130 0.00 0.00 0.00 4.40
127 128 7.752239 TCTTTTCTCGAATCAATCAAAGAATGC 59.248 33.333 0.00 0.00 32.53 3.56
128 129 9.616634 TTCTTTTCTCGAATCAATCAAAGAATG 57.383 29.630 0.00 0.00 34.22 2.67
130 131 9.450807 GTTTCTTTTCTCGAATCAATCAAAGAA 57.549 29.630 0.00 0.00 35.88 2.52
131 132 7.798516 CGTTTCTTTTCTCGAATCAATCAAAGA 59.201 33.333 0.00 0.00 29.39 2.52
132 133 7.408710 GCGTTTCTTTTCTCGAATCAATCAAAG 60.409 37.037 0.00 0.00 0.00 2.77
133 134 6.359617 GCGTTTCTTTTCTCGAATCAATCAAA 59.640 34.615 0.00 0.00 0.00 2.69
134 135 5.851177 GCGTTTCTTTTCTCGAATCAATCAA 59.149 36.000 0.00 0.00 0.00 2.57
135 136 5.382303 GCGTTTCTTTTCTCGAATCAATCA 58.618 37.500 0.00 0.00 0.00 2.57
136 137 4.488797 CGCGTTTCTTTTCTCGAATCAATC 59.511 41.667 0.00 0.00 0.00 2.67
137 138 4.151689 TCGCGTTTCTTTTCTCGAATCAAT 59.848 37.500 5.77 0.00 0.00 2.57
138 139 3.491639 TCGCGTTTCTTTTCTCGAATCAA 59.508 39.130 5.77 0.00 0.00 2.57
139 140 3.054166 TCGCGTTTCTTTTCTCGAATCA 58.946 40.909 5.77 0.00 0.00 2.57
140 141 3.700130 TCGCGTTTCTTTTCTCGAATC 57.300 42.857 5.77 0.00 0.00 2.52
148 149 1.265905 GTGACCCATCGCGTTTCTTTT 59.734 47.619 5.77 0.00 0.00 2.27
152 153 1.326548 GTATGTGACCCATCGCGTTTC 59.673 52.381 5.77 0.00 38.25 2.78
162 164 1.063764 GAGAGACGTCGTATGTGACCC 59.936 57.143 10.46 0.00 35.40 4.46
164 166 4.854361 TTAGAGAGACGTCGTATGTGAC 57.146 45.455 10.46 0.00 35.49 3.67
253 2473 1.006571 CACCGGATTCGTATCCCCG 60.007 63.158 9.46 8.10 46.53 5.73
254 2474 0.033090 GTCACCGGATTCGTATCCCC 59.967 60.000 9.46 0.00 46.53 4.81
270 2490 4.221924 TCCATGATTTGGTTACTCGAGTCA 59.778 41.667 23.89 11.61 46.52 3.41
272 2492 4.504858 GTCCATGATTTGGTTACTCGAGT 58.495 43.478 23.66 23.66 46.52 4.18
274 2494 3.262151 TGGTCCATGATTTGGTTACTCGA 59.738 43.478 0.00 0.00 46.52 4.04
283 2503 4.158949 TCTTGCTCATTGGTCCATGATTTG 59.841 41.667 0.00 0.00 0.00 2.32
286 2506 3.552875 CTCTTGCTCATTGGTCCATGAT 58.447 45.455 0.00 0.00 0.00 2.45
287 2507 2.356432 CCTCTTGCTCATTGGTCCATGA 60.356 50.000 0.00 0.00 0.00 3.07
288 2508 2.022195 CCTCTTGCTCATTGGTCCATG 58.978 52.381 0.00 0.00 0.00 3.66
290 2510 0.322816 GCCTCTTGCTCATTGGTCCA 60.323 55.000 0.00 0.00 36.87 4.02
291 2511 0.322816 TGCCTCTTGCTCATTGGTCC 60.323 55.000 0.00 0.00 42.00 4.46
292 2512 1.760192 ATGCCTCTTGCTCATTGGTC 58.240 50.000 0.00 0.00 42.00 4.02
293 2513 2.097825 GAATGCCTCTTGCTCATTGGT 58.902 47.619 0.00 0.00 42.00 3.67
294 2514 2.097036 TGAATGCCTCTTGCTCATTGG 58.903 47.619 0.00 0.00 42.00 3.16
295 2515 3.861276 TTGAATGCCTCTTGCTCATTG 57.139 42.857 0.00 0.00 42.00 2.82
296 2516 4.877378 TTTTGAATGCCTCTTGCTCATT 57.123 36.364 0.00 0.00 42.00 2.57
297 2517 4.282703 ACTTTTTGAATGCCTCTTGCTCAT 59.717 37.500 0.00 0.00 42.00 2.90
298 2518 3.638160 ACTTTTTGAATGCCTCTTGCTCA 59.362 39.130 0.00 0.00 42.00 4.26
299 2519 3.985925 CACTTTTTGAATGCCTCTTGCTC 59.014 43.478 0.00 0.00 42.00 4.26
300 2520 3.638160 TCACTTTTTGAATGCCTCTTGCT 59.362 39.130 0.00 0.00 42.00 3.91
301 2521 3.981211 TCACTTTTTGAATGCCTCTTGC 58.019 40.909 0.00 0.00 41.77 4.01
302 2522 6.907206 TTTTCACTTTTTGAATGCCTCTTG 57.093 33.333 0.00 0.00 43.99 3.02
326 2546 2.159382 CCATGACTACGCCACCTTTTT 58.841 47.619 0.00 0.00 0.00 1.94
327 2547 1.349688 TCCATGACTACGCCACCTTTT 59.650 47.619 0.00 0.00 0.00 2.27
328 2548 0.981183 TCCATGACTACGCCACCTTT 59.019 50.000 0.00 0.00 0.00 3.11
329 2549 0.249398 GTCCATGACTACGCCACCTT 59.751 55.000 0.00 0.00 0.00 3.50
330 2550 1.614241 GGTCCATGACTACGCCACCT 61.614 60.000 0.00 0.00 32.47 4.00
331 2551 1.153429 GGTCCATGACTACGCCACC 60.153 63.158 0.00 0.00 32.47 4.61
332 2552 0.036765 TTGGTCCATGACTACGCCAC 60.037 55.000 0.00 0.00 32.47 5.01
333 2553 0.908910 ATTGGTCCATGACTACGCCA 59.091 50.000 0.00 0.00 32.47 5.69
334 2554 1.134521 TCATTGGTCCATGACTACGCC 60.135 52.381 0.00 0.00 32.47 5.68
335 2555 2.205074 CTCATTGGTCCATGACTACGC 58.795 52.381 0.00 0.00 32.47 4.42
336 2556 2.205074 GCTCATTGGTCCATGACTACG 58.795 52.381 0.00 0.00 32.47 3.51
337 2557 3.266510 TGCTCATTGGTCCATGACTAC 57.733 47.619 0.00 0.00 32.47 2.73
338 2558 3.519107 TCTTGCTCATTGGTCCATGACTA 59.481 43.478 0.00 0.00 32.47 2.59
339 2559 2.306805 TCTTGCTCATTGGTCCATGACT 59.693 45.455 0.00 0.00 32.47 3.41
340 2560 2.681848 CTCTTGCTCATTGGTCCATGAC 59.318 50.000 0.00 0.00 0.00 3.06
382 2602 1.265905 CGCTACGCCACCTTTTCTTTT 59.734 47.619 0.00 0.00 0.00 2.27
383 2603 0.872388 CGCTACGCCACCTTTTCTTT 59.128 50.000 0.00 0.00 0.00 2.52
384 2604 0.953960 CCGCTACGCCACCTTTTCTT 60.954 55.000 0.00 0.00 0.00 2.52
385 2605 1.375523 CCGCTACGCCACCTTTTCT 60.376 57.895 0.00 0.00 0.00 2.52
386 2606 1.359459 CTCCGCTACGCCACCTTTTC 61.359 60.000 0.00 0.00 0.00 2.29
422 2653 2.668550 GTCTCCACCGGCCAACAC 60.669 66.667 0.00 0.00 0.00 3.32
498 2730 3.713902 CCCCCTAACATAGCAGCAG 57.286 57.895 0.00 0.00 0.00 4.24
518 2750 1.228245 GGCTGTCTTGGTTCTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
541 2793 3.232720 AGGGGTTTTTCTTTCCGCTTA 57.767 42.857 0.00 0.00 40.71 3.09
544 2796 2.902705 AAAGGGGTTTTTCTTTCCGC 57.097 45.000 0.00 0.00 34.97 5.54
557 2810 4.752879 TCGCGGCTCGAAAAGGGG 62.753 66.667 6.13 0.00 45.36 4.79
607 2860 4.123009 TGCACGCTGGCATGCATG 62.123 61.111 22.70 22.70 46.63 4.06
639 2900 1.209275 CGCGTATGCCTTCTCTTCCG 61.209 60.000 0.00 0.00 38.08 4.30
640 2901 1.491505 GCGCGTATGCCTTCTCTTCC 61.492 60.000 8.43 0.00 38.08 3.46
665 2926 1.076632 TTGTGTTCCCACCCACACC 60.077 57.895 0.20 0.00 42.33 4.16
666 2927 1.720694 CGTTGTGTTCCCACCCACAC 61.721 60.000 0.00 0.00 41.03 3.82
667 2928 1.452289 CGTTGTGTTCCCACCCACA 60.452 57.895 0.00 0.00 41.09 4.17
668 2929 2.841160 GCGTTGTGTTCCCACCCAC 61.841 63.158 0.00 0.00 41.09 4.61
669 2930 2.517402 GCGTTGTGTTCCCACCCA 60.517 61.111 0.00 0.00 41.09 4.51
670 2931 2.517402 TGCGTTGTGTTCCCACCC 60.517 61.111 0.00 0.00 41.09 4.61
707 2968 0.526954 CAAATCATCTTGCGCTGGCC 60.527 55.000 9.73 0.00 38.85 5.36
724 2985 0.238817 GTTTTGGCCGCACGTATCAA 59.761 50.000 0.00 0.00 0.00 2.57
725 2986 1.579084 GGTTTTGGCCGCACGTATCA 61.579 55.000 0.00 0.00 0.00 2.15
727 2988 1.302993 AGGTTTTGGCCGCACGTAT 60.303 52.632 0.00 0.00 0.00 3.06
728 2989 1.962306 GAGGTTTTGGCCGCACGTA 60.962 57.895 0.00 0.00 0.00 3.57
729 2990 3.284449 GAGGTTTTGGCCGCACGT 61.284 61.111 0.00 0.00 0.00 4.49
730 2991 4.383602 CGAGGTTTTGGCCGCACG 62.384 66.667 0.00 0.00 0.00 5.34
738 2999 3.963665 TCATCTTTGCAACGAGGTTTTG 58.036 40.909 15.88 7.20 0.00 2.44
739 3000 4.853924 ATCATCTTTGCAACGAGGTTTT 57.146 36.364 15.88 2.06 0.00 2.43
740 3001 4.853924 AATCATCTTTGCAACGAGGTTT 57.146 36.364 15.88 11.66 0.00 3.27
741 3002 4.278170 TCAAATCATCTTTGCAACGAGGTT 59.722 37.500 15.88 6.44 0.00 3.50
742 3003 3.820467 TCAAATCATCTTTGCAACGAGGT 59.180 39.130 15.88 0.00 0.00 3.85
743 3004 4.424061 TCAAATCATCTTTGCAACGAGG 57.576 40.909 10.99 10.99 0.00 4.63
744 3005 5.226565 CGATTCAAATCATCTTTGCAACGAG 59.773 40.000 11.57 1.70 35.11 4.18
745 3006 5.088068 CGATTCAAATCATCTTTGCAACGA 58.912 37.500 8.20 8.20 35.11 3.85
746 3007 4.263677 CCGATTCAAATCATCTTTGCAACG 59.736 41.667 0.00 0.00 35.11 4.10
747 3008 5.401550 TCCGATTCAAATCATCTTTGCAAC 58.598 37.500 0.00 0.00 35.11 4.17
748 3009 5.641783 TCCGATTCAAATCATCTTTGCAA 57.358 34.783 0.00 0.00 35.11 4.08
749 3010 5.584442 CATCCGATTCAAATCATCTTTGCA 58.416 37.500 3.81 0.00 35.11 4.08
750 3011 4.443394 GCATCCGATTCAAATCATCTTTGC 59.557 41.667 3.81 1.91 35.11 3.68
751 3012 4.980434 GGCATCCGATTCAAATCATCTTTG 59.020 41.667 3.81 0.00 35.11 2.77
752 3013 4.646040 TGGCATCCGATTCAAATCATCTTT 59.354 37.500 3.81 0.00 35.11 2.52
753 3014 4.209538 TGGCATCCGATTCAAATCATCTT 58.790 39.130 3.81 0.00 35.11 2.40
754 3015 3.824133 TGGCATCCGATTCAAATCATCT 58.176 40.909 3.81 0.00 35.11 2.90
755 3016 4.572985 TTGGCATCCGATTCAAATCATC 57.427 40.909 3.81 0.00 35.11 2.92
756 3017 5.111293 GTTTTGGCATCCGATTCAAATCAT 58.889 37.500 3.81 0.00 35.11 2.45
757 3018 4.493547 GTTTTGGCATCCGATTCAAATCA 58.506 39.130 3.81 0.00 35.11 2.57
758 3019 3.865164 GGTTTTGGCATCCGATTCAAATC 59.135 43.478 0.00 6.84 0.00 2.17
759 3020 3.515104 AGGTTTTGGCATCCGATTCAAAT 59.485 39.130 0.00 0.00 0.00 2.32
760 3021 2.896685 AGGTTTTGGCATCCGATTCAAA 59.103 40.909 0.00 3.69 0.00 2.69
761 3022 2.491693 GAGGTTTTGGCATCCGATTCAA 59.508 45.455 0.00 0.00 0.00 2.69
762 3023 2.091541 GAGGTTTTGGCATCCGATTCA 58.908 47.619 0.00 0.00 0.00 2.57
800 3061 2.283173 AAGCAAAAGAGGGCCGGG 60.283 61.111 2.18 0.00 0.00 5.73
801 3062 2.964978 CAAGCAAAAGAGGGCCGG 59.035 61.111 0.00 0.00 0.00 6.13
803 3064 2.259511 CGCAAGCAAAAGAGGGCC 59.740 61.111 0.00 0.00 0.00 5.80
886 3266 2.191375 GGGGTAAAGGCGGTAGGC 59.809 66.667 0.00 0.00 44.19 3.93
887 3267 2.913501 GGGGGTAAAGGCGGTAGG 59.086 66.667 0.00 0.00 0.00 3.18
916 3296 1.850441 GCGTGTACTTATAGCCGTGTG 59.150 52.381 0.00 0.00 0.00 3.82
917 3297 1.473677 TGCGTGTACTTATAGCCGTGT 59.526 47.619 0.00 0.00 0.00 4.49
994 3416 1.003233 AAGGAAGCGGCTGGAAGAC 60.003 57.895 1.81 0.00 40.17 3.01
995 3417 1.296715 GAAGGAAGCGGCTGGAAGA 59.703 57.895 1.81 0.00 34.07 2.87
1042 3464 3.194861 TCACTACTTTCTGTGTGTGTGC 58.805 45.455 0.00 0.00 36.53 4.57
1048 3470 2.623889 ACGAGCTCACTACTTTCTGTGT 59.376 45.455 15.40 0.00 35.82 3.72
1049 3471 3.238441 GACGAGCTCACTACTTTCTGTG 58.762 50.000 15.40 0.00 35.68 3.66
1050 3472 2.095668 CGACGAGCTCACTACTTTCTGT 60.096 50.000 15.40 0.00 0.00 3.41
1051 3473 2.159824 TCGACGAGCTCACTACTTTCTG 59.840 50.000 15.40 0.00 0.00 3.02
1052 3474 2.424557 TCGACGAGCTCACTACTTTCT 58.575 47.619 15.40 0.00 0.00 2.52
1053 3475 2.896243 TCGACGAGCTCACTACTTTC 57.104 50.000 15.40 0.00 0.00 2.62
1054 3476 2.097791 GGATCGACGAGCTCACTACTTT 59.902 50.000 15.40 0.00 0.00 2.66
1061 3484 3.209812 CCCGGATCGACGAGCTCA 61.210 66.667 15.40 0.00 35.47 4.26
1079 3502 1.327303 GGTCGCTCATCCTGATCTCT 58.673 55.000 0.00 0.00 0.00 3.10
1147 3587 0.034616 GGATCCTCTTCTCCATGCCG 59.965 60.000 3.84 0.00 0.00 5.69
1195 3654 4.507021 CACAGACCATCAAGATCAAGATCG 59.493 45.833 4.54 0.00 42.48 3.69
1218 3677 7.325821 CACACATACATAAATGACCAACAACAC 59.674 37.037 0.00 0.00 0.00 3.32
1220 3679 6.307800 GCACACATACATAAATGACCAACAAC 59.692 38.462 0.00 0.00 0.00 3.32
1222 3681 5.474876 TGCACACATACATAAATGACCAACA 59.525 36.000 0.00 0.00 0.00 3.33
1227 3686 5.818136 ACCTGCACACATACATAAATGAC 57.182 39.130 0.00 0.00 0.00 3.06
1229 3688 7.320443 AGTAACCTGCACACATACATAAATG 57.680 36.000 0.00 0.00 0.00 2.32
1231 3690 6.819649 GGTAGTAACCTGCACACATACATAAA 59.180 38.462 0.00 0.00 43.08 1.40
1232 3691 6.070710 TGGTAGTAACCTGCACACATACATAA 60.071 38.462 0.00 0.00 46.91 1.90
1233 3692 5.422650 TGGTAGTAACCTGCACACATACATA 59.577 40.000 0.00 0.00 46.91 2.29
1234 3693 4.224147 TGGTAGTAACCTGCACACATACAT 59.776 41.667 0.00 0.00 46.91 2.29
1235 3694 3.579151 TGGTAGTAACCTGCACACATACA 59.421 43.478 0.00 0.00 46.91 2.29
1236 3695 4.181578 CTGGTAGTAACCTGCACACATAC 58.818 47.826 0.00 0.00 46.91 2.39
1237 3696 3.196901 CCTGGTAGTAACCTGCACACATA 59.803 47.826 0.00 0.00 46.91 2.29
1238 3697 2.027192 CCTGGTAGTAACCTGCACACAT 60.027 50.000 0.00 0.00 46.91 3.21
1242 3701 1.207329 CTCCCTGGTAGTAACCTGCAC 59.793 57.143 0.00 0.00 46.91 4.57
1322 3823 4.120755 GAGGAAGCTGGGCTGGGG 62.121 72.222 0.00 0.00 39.62 4.96
1360 3861 3.118454 CCGTGCGCAGGGTAAGTG 61.118 66.667 35.08 13.40 0.00 3.16
1427 3929 1.827969 AGCCTACTTGTGCTAGACAGG 59.172 52.381 0.00 0.00 37.67 4.00
1433 3935 6.075315 TGATAATCCTAGCCTACTTGTGCTA 58.925 40.000 0.00 0.00 39.00 3.49
1434 3936 4.901849 TGATAATCCTAGCCTACTTGTGCT 59.098 41.667 0.00 0.00 41.57 4.40
1435 3937 5.215252 TGATAATCCTAGCCTACTTGTGC 57.785 43.478 0.00 0.00 0.00 4.57
1436 3938 6.821388 AGTTGATAATCCTAGCCTACTTGTG 58.179 40.000 0.00 0.00 0.00 3.33
1437 3939 6.042208 GGAGTTGATAATCCTAGCCTACTTGT 59.958 42.308 0.00 0.00 32.51 3.16
1438 3940 6.459923 GGAGTTGATAATCCTAGCCTACTTG 58.540 44.000 0.00 0.00 32.51 3.16
1439 3941 5.544562 GGGAGTTGATAATCCTAGCCTACTT 59.455 44.000 0.00 0.00 35.80 2.24
1440 3942 5.088026 GGGAGTTGATAATCCTAGCCTACT 58.912 45.833 0.00 0.00 35.80 2.57
1441 3943 5.088026 AGGGAGTTGATAATCCTAGCCTAC 58.912 45.833 0.00 0.00 35.80 3.18
1442 3944 5.355670 AGGGAGTTGATAATCCTAGCCTA 57.644 43.478 0.00 0.00 35.80 3.93
1443 3945 4.220861 AGGGAGTTGATAATCCTAGCCT 57.779 45.455 0.00 0.00 35.80 4.58
1444 3946 5.669164 CTAGGGAGTTGATAATCCTAGCC 57.331 47.826 0.00 0.00 40.12 3.93
1446 3948 6.926630 AAGCTAGGGAGTTGATAATCCTAG 57.073 41.667 9.61 9.61 45.90 3.02
1447 3949 8.974292 ATTAAGCTAGGGAGTTGATAATCCTA 57.026 34.615 0.00 0.00 35.80 2.94
1448 3950 7.880265 ATTAAGCTAGGGAGTTGATAATCCT 57.120 36.000 0.00 0.00 35.80 3.24
1449 3951 9.438228 GTAATTAAGCTAGGGAGTTGATAATCC 57.562 37.037 0.00 0.00 34.64 3.01
1453 3955 9.209048 TGAAGTAATTAAGCTAGGGAGTTGATA 57.791 33.333 0.00 0.00 0.00 2.15
1454 3956 7.988028 GTGAAGTAATTAAGCTAGGGAGTTGAT 59.012 37.037 0.00 0.00 0.00 2.57
1462 3964 6.183360 TGGCTAGGTGAAGTAATTAAGCTAGG 60.183 42.308 21.99 9.04 39.82 3.02
1488 3990 1.202348 TGTGAGTACGCTGATCACCAG 59.798 52.381 9.07 0.00 42.11 4.00
1508 4010 3.819564 TGAAAGCACACAGTGAGTACT 57.180 42.857 7.81 0.00 35.23 2.73
1509 4011 5.424121 AAATGAAAGCACACAGTGAGTAC 57.576 39.130 7.81 0.00 35.23 2.73
1510 4012 4.515191 GGAAATGAAAGCACACAGTGAGTA 59.485 41.667 7.81 0.00 35.23 2.59
1520 4022 2.669364 CACAGCAGGAAATGAAAGCAC 58.331 47.619 0.00 0.00 0.00 4.40
1677 4179 4.997395 CGTGGTAAATATCCTTGATGAGGG 59.003 45.833 0.00 0.00 46.31 4.30
1724 4226 9.810870 CATATATATGGAGGAGAGAGATCATGA 57.189 37.037 14.04 0.00 0.00 3.07
1725 4227 9.810870 TCATATATATGGAGGAGAGAGATCATG 57.189 37.037 20.18 0.00 34.50 3.07
1785 4303 2.032071 GGCAGGCAACACCGTAGT 59.968 61.111 0.00 0.00 46.52 2.73
1786 4304 0.889186 AAAGGCAGGCAACACCGTAG 60.889 55.000 0.00 0.00 46.52 3.51
1787 4305 1.149627 AAAGGCAGGCAACACCGTA 59.850 52.632 0.00 0.00 46.52 4.02
1788 4306 2.123897 AAAGGCAGGCAACACCGT 60.124 55.556 0.00 0.00 46.52 4.83
1794 4312 1.202710 TCGAGTTACAAAGGCAGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
1804 4322 6.693466 TGTTACTGATGGATTCGAGTTACAA 58.307 36.000 0.00 0.00 29.95 2.41
1868 4402 5.288712 ACACGTGCAAGAGTATAAAGAATCG 59.711 40.000 17.22 0.00 0.00 3.34
1869 4403 6.648725 ACACGTGCAAGAGTATAAAGAATC 57.351 37.500 17.22 0.00 0.00 2.52
1898 4432 5.173664 TCATCACTACTGAGCACAATGAAG 58.826 41.667 0.00 0.00 0.00 3.02
1938 4472 5.129815 ACCCAACCGCAATAATACTAAGAGA 59.870 40.000 0.00 0.00 0.00 3.10
1939 4473 5.236478 CACCCAACCGCAATAATACTAAGAG 59.764 44.000 0.00 0.00 0.00 2.85
1940 4474 5.120399 CACCCAACCGCAATAATACTAAGA 58.880 41.667 0.00 0.00 0.00 2.10
1941 4475 4.274950 CCACCCAACCGCAATAATACTAAG 59.725 45.833 0.00 0.00 0.00 2.18
1942 4476 4.080469 TCCACCCAACCGCAATAATACTAA 60.080 41.667 0.00 0.00 0.00 2.24
1943 4477 3.455177 TCCACCCAACCGCAATAATACTA 59.545 43.478 0.00 0.00 0.00 1.82
1944 4478 2.240160 TCCACCCAACCGCAATAATACT 59.760 45.455 0.00 0.00 0.00 2.12
1945 4479 2.645802 TCCACCCAACCGCAATAATAC 58.354 47.619 0.00 0.00 0.00 1.89
1946 4480 3.367646 TTCCACCCAACCGCAATAATA 57.632 42.857 0.00 0.00 0.00 0.98
1954 4488 0.323360 ATCCACATTCCACCCAACCG 60.323 55.000 0.00 0.00 0.00 4.44
1987 4521 0.179166 CTCTCGCTCAGTGCAGAGAC 60.179 60.000 7.13 0.00 43.29 3.36
2000 4539 0.944386 TTGTTGCCTTTCACTCTCGC 59.056 50.000 0.00 0.00 0.00 5.03
2014 4553 3.443037 TGGTTCTCGCAAATTGTTGTTG 58.557 40.909 0.00 0.00 37.06 3.33
2143 4688 2.185310 GAGGCCTTCCGGACACATGT 62.185 60.000 6.77 0.00 42.67 3.21
2148 4693 0.040646 TTCTAGAGGCCTTCCGGACA 59.959 55.000 6.77 0.00 42.67 4.02
2179 4724 5.508224 CCTTTTTCTCGAACGTTATGCAATC 59.492 40.000 0.00 0.00 0.00 2.67
2182 4727 4.059511 TCCTTTTTCTCGAACGTTATGCA 58.940 39.130 0.00 0.00 0.00 3.96
2209 4754 2.678336 CACGGATAAGGCAGGAAGTTTC 59.322 50.000 0.00 0.00 0.00 2.78
2214 4759 1.207089 CTCACACGGATAAGGCAGGAA 59.793 52.381 0.00 0.00 0.00 3.36
2222 4767 2.101415 CAGAGCCATCTCACACGGATAA 59.899 50.000 0.00 0.00 41.81 1.75
2237 4782 2.737830 GGCGTCCCTATCAGAGCC 59.262 66.667 0.00 0.00 37.61 4.70
2248 4794 4.570663 CGGTGATCTCCGGCGTCC 62.571 72.222 25.06 0.77 45.88 4.79
2265 4811 2.432628 CAGAGAACCCACGGCGAC 60.433 66.667 16.62 0.00 0.00 5.19
2268 4814 2.047179 GTCCAGAGAACCCACGGC 60.047 66.667 0.00 0.00 0.00 5.68
2333 4879 1.401905 GCAAGATCATTCCAACCGTCC 59.598 52.381 0.00 0.00 0.00 4.79
2434 4980 0.868406 GCAAGTTTGCGCAGACTACT 59.132 50.000 31.02 19.54 45.11 2.57
2445 4991 4.922692 TGAGCGGAATAATTTGCAAGTTTG 59.077 37.500 12.75 0.37 0.00 2.93
2498 5044 2.025727 GCATCATGGAGCGCTTGC 59.974 61.111 13.26 13.21 39.58 4.01
2499 5045 1.647629 GAGCATCATGGAGCGCTTG 59.352 57.895 13.26 6.25 34.12 4.01
2500 5046 1.886313 CGAGCATCATGGAGCGCTT 60.886 57.895 13.26 0.00 34.12 4.68
2501 5047 2.279985 CGAGCATCATGGAGCGCT 60.280 61.111 11.27 11.27 37.44 5.92
2502 5048 1.431488 TTTCGAGCATCATGGAGCGC 61.431 55.000 0.00 0.00 35.48 5.92
2503 5049 1.224075 ATTTCGAGCATCATGGAGCG 58.776 50.000 0.00 0.00 35.48 5.03
2504 5050 3.065786 TCAAATTTCGAGCATCATGGAGC 59.934 43.478 0.00 0.00 33.17 4.70
2505 5051 4.888038 TCAAATTTCGAGCATCATGGAG 57.112 40.909 0.00 0.00 33.17 3.86
2506 5052 4.943093 TCTTCAAATTTCGAGCATCATGGA 59.057 37.500 0.00 0.00 33.17 3.41
2507 5053 5.239359 TCTTCAAATTTCGAGCATCATGG 57.761 39.130 0.00 0.00 33.17 3.66
2508 5054 5.913514 GGATCTTCAAATTTCGAGCATCATG 59.086 40.000 0.00 0.00 33.17 3.07
2509 5055 5.009410 GGGATCTTCAAATTTCGAGCATCAT 59.991 40.000 0.00 0.00 33.17 2.45
2510 5056 4.336433 GGGATCTTCAAATTTCGAGCATCA 59.664 41.667 0.00 0.00 33.17 3.07
2511 5057 4.336433 TGGGATCTTCAAATTTCGAGCATC 59.664 41.667 0.00 0.00 0.00 3.91
2512 5058 4.272489 TGGGATCTTCAAATTTCGAGCAT 58.728 39.130 0.00 0.00 0.00 3.79
2513 5059 3.684908 TGGGATCTTCAAATTTCGAGCA 58.315 40.909 0.00 0.00 0.00 4.26
2514 5060 4.907879 ATGGGATCTTCAAATTTCGAGC 57.092 40.909 0.00 0.00 0.00 5.03
2515 5061 7.280876 TGAGTTATGGGATCTTCAAATTTCGAG 59.719 37.037 0.00 0.00 0.00 4.04
2516 5062 7.109501 TGAGTTATGGGATCTTCAAATTTCGA 58.890 34.615 0.00 0.00 0.00 3.71
2517 5063 7.280876 TCTGAGTTATGGGATCTTCAAATTTCG 59.719 37.037 0.00 0.00 0.00 3.46
2518 5064 8.511604 TCTGAGTTATGGGATCTTCAAATTTC 57.488 34.615 0.00 0.00 0.00 2.17
2519 5065 9.484806 AATCTGAGTTATGGGATCTTCAAATTT 57.515 29.630 0.00 0.00 0.00 1.82
2520 5066 9.484806 AAATCTGAGTTATGGGATCTTCAAATT 57.515 29.630 0.00 0.00 0.00 1.82
2521 5067 9.484806 AAAATCTGAGTTATGGGATCTTCAAAT 57.515 29.630 0.00 0.00 0.00 2.32
2522 5068 8.742777 CAAAATCTGAGTTATGGGATCTTCAAA 58.257 33.333 0.00 0.00 0.00 2.69
2523 5069 8.108999 TCAAAATCTGAGTTATGGGATCTTCAA 58.891 33.333 0.00 0.00 0.00 2.69
2524 5070 7.632861 TCAAAATCTGAGTTATGGGATCTTCA 58.367 34.615 0.00 0.00 0.00 3.02
2525 5071 8.511604 TTCAAAATCTGAGTTATGGGATCTTC 57.488 34.615 0.00 0.00 34.81 2.87
2526 5072 8.884124 TTTCAAAATCTGAGTTATGGGATCTT 57.116 30.769 0.00 0.00 34.81 2.40
2527 5073 8.884124 TTTTCAAAATCTGAGTTATGGGATCT 57.116 30.769 0.00 0.00 34.81 2.75
2562 5108 9.658799 GAGCATATCCTAAATGTGTATGTGTAT 57.341 33.333 0.00 0.00 0.00 2.29
2563 5109 8.870116 AGAGCATATCCTAAATGTGTATGTGTA 58.130 33.333 0.00 0.00 0.00 2.90
2564 5110 7.739825 AGAGCATATCCTAAATGTGTATGTGT 58.260 34.615 0.00 0.00 0.00 3.72
2565 5111 9.144747 GTAGAGCATATCCTAAATGTGTATGTG 57.855 37.037 0.00 0.00 0.00 3.21
2566 5112 8.870116 TGTAGAGCATATCCTAAATGTGTATGT 58.130 33.333 0.00 0.00 0.00 2.29
2567 5113 9.710900 TTGTAGAGCATATCCTAAATGTGTATG 57.289 33.333 0.00 0.00 0.00 2.39
2568 5114 9.935241 CTTGTAGAGCATATCCTAAATGTGTAT 57.065 33.333 0.00 0.00 0.00 2.29
2569 5115 8.924303 ACTTGTAGAGCATATCCTAAATGTGTA 58.076 33.333 0.00 0.00 0.00 2.90
2570 5116 7.712639 CACTTGTAGAGCATATCCTAAATGTGT 59.287 37.037 0.00 0.00 30.13 3.72
2571 5117 7.712639 ACACTTGTAGAGCATATCCTAAATGTG 59.287 37.037 0.00 0.00 35.79 3.21
2572 5118 7.712639 CACACTTGTAGAGCATATCCTAAATGT 59.287 37.037 0.00 0.00 0.00 2.71
2573 5119 7.928167 TCACACTTGTAGAGCATATCCTAAATG 59.072 37.037 0.00 0.00 0.00 2.32
2574 5120 8.023021 TCACACTTGTAGAGCATATCCTAAAT 57.977 34.615 0.00 0.00 0.00 1.40
2575 5121 7.418337 TCACACTTGTAGAGCATATCCTAAA 57.582 36.000 0.00 0.00 0.00 1.85
2576 5122 7.342026 TCTTCACACTTGTAGAGCATATCCTAA 59.658 37.037 0.00 0.00 0.00 2.69
2577 5123 6.833933 TCTTCACACTTGTAGAGCATATCCTA 59.166 38.462 0.00 0.00 0.00 2.94
2578 5124 5.658634 TCTTCACACTTGTAGAGCATATCCT 59.341 40.000 0.00 0.00 0.00 3.24
2579 5125 5.907207 TCTTCACACTTGTAGAGCATATCC 58.093 41.667 0.00 0.00 0.00 2.59
2580 5126 6.568869 ACTCTTCACACTTGTAGAGCATATC 58.431 40.000 8.49 0.00 46.30 1.63
2581 5127 6.537453 ACTCTTCACACTTGTAGAGCATAT 57.463 37.500 8.49 0.00 46.30 1.78
2582 5128 5.984695 ACTCTTCACACTTGTAGAGCATA 57.015 39.130 8.49 0.00 46.30 3.14
2583 5129 4.881019 ACTCTTCACACTTGTAGAGCAT 57.119 40.909 8.49 0.00 46.30 3.79
2584 5130 4.501571 GGAACTCTTCACACTTGTAGAGCA 60.502 45.833 8.49 0.00 46.30 4.26
2585 5131 3.991121 GGAACTCTTCACACTTGTAGAGC 59.009 47.826 8.49 0.00 46.30 4.09
2587 5133 5.304357 TCATGGAACTCTTCACACTTGTAGA 59.696 40.000 0.00 0.00 0.00 2.59
2588 5134 5.541845 TCATGGAACTCTTCACACTTGTAG 58.458 41.667 0.00 0.00 0.00 2.74
2589 5135 5.545063 TCATGGAACTCTTCACACTTGTA 57.455 39.130 0.00 0.00 0.00 2.41
2590 5136 4.422073 TCATGGAACTCTTCACACTTGT 57.578 40.909 0.00 0.00 0.00 3.16
2591 5137 4.999311 TCATCATGGAACTCTTCACACTTG 59.001 41.667 0.00 0.00 0.00 3.16
2592 5138 5.233083 TCATCATGGAACTCTTCACACTT 57.767 39.130 0.00 0.00 0.00 3.16
2593 5139 4.897509 TCATCATGGAACTCTTCACACT 57.102 40.909 0.00 0.00 0.00 3.55
2594 5140 5.947228 TTTCATCATGGAACTCTTCACAC 57.053 39.130 0.00 0.00 0.00 3.82
2595 5141 7.167535 TGTATTTCATCATGGAACTCTTCACA 58.832 34.615 0.00 0.00 0.00 3.58
2596 5142 7.615582 TGTATTTCATCATGGAACTCTTCAC 57.384 36.000 0.00 0.00 0.00 3.18
2597 5143 8.812513 AATGTATTTCATCATGGAACTCTTCA 57.187 30.769 0.00 0.00 35.48 3.02
2618 5164 9.845740 TTTTGTGTAGCCTACATCATATAATGT 57.154 29.630 8.00 0.00 41.34 2.71
2643 5189 9.656040 TGCTAAAAATGCATGATTATGTCTTTT 57.344 25.926 0.00 2.58 36.65 2.27
2644 5190 9.090692 GTGCTAAAAATGCATGATTATGTCTTT 57.909 29.630 0.00 0.00 42.69 2.52
2645 5191 8.252417 TGTGCTAAAAATGCATGATTATGTCTT 58.748 29.630 0.00 0.00 42.69 3.01
2646 5192 7.774134 TGTGCTAAAAATGCATGATTATGTCT 58.226 30.769 0.00 0.00 42.69 3.41
2647 5193 7.990541 TGTGCTAAAAATGCATGATTATGTC 57.009 32.000 0.00 0.00 42.69 3.06
2648 5194 7.982919 ACATGTGCTAAAAATGCATGATTATGT 59.017 29.630 0.00 2.54 42.69 2.29
2649 5195 8.360325 ACATGTGCTAAAAATGCATGATTATG 57.640 30.769 0.00 1.94 42.69 1.90
2650 5196 9.467258 GTACATGTGCTAAAAATGCATGATTAT 57.533 29.630 9.11 0.00 42.69 1.28
2651 5197 8.685427 AGTACATGTGCTAAAAATGCATGATTA 58.315 29.630 15.40 2.03 42.69 1.75
2652 5198 7.549839 AGTACATGTGCTAAAAATGCATGATT 58.450 30.769 15.40 0.73 42.69 2.57
2653 5199 7.067859 AGAGTACATGTGCTAAAAATGCATGAT 59.932 33.333 16.96 0.00 42.69 2.45
2654 5200 6.375174 AGAGTACATGTGCTAAAAATGCATGA 59.625 34.615 16.96 0.00 42.69 3.07
2655 5201 6.558009 AGAGTACATGTGCTAAAAATGCATG 58.442 36.000 16.96 0.00 42.69 4.06
2656 5202 6.764308 AGAGTACATGTGCTAAAAATGCAT 57.236 33.333 16.96 0.00 42.69 3.96
2657 5203 6.206438 TGAAGAGTACATGTGCTAAAAATGCA 59.794 34.615 16.96 5.86 38.19 3.96
2658 5204 6.524586 GTGAAGAGTACATGTGCTAAAAATGC 59.475 38.462 16.96 2.54 0.00 3.56
2659 5205 7.810658 AGTGAAGAGTACATGTGCTAAAAATG 58.189 34.615 16.96 0.00 0.00 2.32
2660 5206 7.986085 AGTGAAGAGTACATGTGCTAAAAAT 57.014 32.000 16.96 1.62 0.00 1.82
2662 5208 9.803315 CTATAGTGAAGAGTACATGTGCTAAAA 57.197 33.333 16.96 0.48 0.00 1.52
2663 5209 9.185680 TCTATAGTGAAGAGTACATGTGCTAAA 57.814 33.333 16.96 0.13 0.00 1.85
2664 5210 8.747538 TCTATAGTGAAGAGTACATGTGCTAA 57.252 34.615 16.96 0.49 0.00 3.09
2665 5211 8.747538 TTCTATAGTGAAGAGTACATGTGCTA 57.252 34.615 16.96 0.00 0.00 3.49
2666 5212 7.646548 TTCTATAGTGAAGAGTACATGTGCT 57.353 36.000 16.95 16.95 0.00 4.40
2667 5213 8.879342 ATTTCTATAGTGAAGAGTACATGTGC 57.121 34.615 9.11 7.34 0.00 4.57
2695 5241 9.905171 GAGCTACAAAAGAGAAAAGAAAATCAT 57.095 29.630 0.00 0.00 0.00 2.45
2696 5242 8.902806 TGAGCTACAAAAGAGAAAAGAAAATCA 58.097 29.630 0.00 0.00 0.00 2.57
2697 5243 9.175060 GTGAGCTACAAAAGAGAAAAGAAAATC 57.825 33.333 0.00 0.00 0.00 2.17
2698 5244 8.686334 TGTGAGCTACAAAAGAGAAAAGAAAAT 58.314 29.630 0.00 0.00 36.06 1.82
2699 5245 8.050778 TGTGAGCTACAAAAGAGAAAAGAAAA 57.949 30.769 0.00 0.00 36.06 2.29
2700 5246 7.624360 TGTGAGCTACAAAAGAGAAAAGAAA 57.376 32.000 0.00 0.00 36.06 2.52
2701 5247 7.807977 ATGTGAGCTACAAAAGAGAAAAGAA 57.192 32.000 0.00 0.00 43.77 2.52
2702 5248 8.774586 GTTATGTGAGCTACAAAAGAGAAAAGA 58.225 33.333 0.00 0.00 43.77 2.52
2703 5249 8.559536 TGTTATGTGAGCTACAAAAGAGAAAAG 58.440 33.333 0.00 0.00 43.77 2.27
2704 5250 8.445275 TGTTATGTGAGCTACAAAAGAGAAAA 57.555 30.769 0.00 0.00 43.77 2.29
2705 5251 8.342634 GTTGTTATGTGAGCTACAAAAGAGAAA 58.657 33.333 0.00 0.00 43.77 2.52
2706 5252 7.715249 AGTTGTTATGTGAGCTACAAAAGAGAA 59.285 33.333 0.00 0.00 43.77 2.87
2707 5253 7.217200 AGTTGTTATGTGAGCTACAAAAGAGA 58.783 34.615 0.00 0.00 43.77 3.10
2708 5254 7.426929 AGTTGTTATGTGAGCTACAAAAGAG 57.573 36.000 0.00 0.00 43.77 2.85
2709 5255 7.801716 AAGTTGTTATGTGAGCTACAAAAGA 57.198 32.000 0.00 0.00 43.77 2.52
2736 5282 9.985730 ACAAAGTGTGTAAATTTTCATGATGAT 57.014 25.926 0.00 0.00 39.29 2.45
2740 5286 9.944663 GTCTACAAAGTGTGTAAATTTTCATGA 57.055 29.630 0.00 0.00 42.23 3.07
2741 5287 9.729023 TGTCTACAAAGTGTGTAAATTTTCATG 57.271 29.630 0.00 0.00 42.23 3.07
2743 5289 9.562583 GTTGTCTACAAAGTGTGTAAATTTTCA 57.437 29.630 0.00 0.00 42.23 2.69
2744 5290 9.562583 TGTTGTCTACAAAGTGTGTAAATTTTC 57.437 29.630 0.00 0.00 42.23 2.29
2746 5292 9.730420 GATGTTGTCTACAAAGTGTGTAAATTT 57.270 29.630 0.00 0.00 42.23 1.82
2747 5293 8.349983 GGATGTTGTCTACAAAGTGTGTAAATT 58.650 33.333 0.00 0.00 42.23 1.82
2748 5294 7.040686 GGGATGTTGTCTACAAAGTGTGTAAAT 60.041 37.037 0.00 0.00 42.23 1.40
2749 5295 6.261381 GGGATGTTGTCTACAAAGTGTGTAAA 59.739 38.462 0.00 0.00 42.23 2.01
2750 5296 5.761234 GGGATGTTGTCTACAAAGTGTGTAA 59.239 40.000 0.00 0.00 42.23 2.41
2751 5297 5.071250 AGGGATGTTGTCTACAAAGTGTGTA 59.929 40.000 0.00 0.00 41.98 2.90
2752 5298 4.134563 GGGATGTTGTCTACAAAGTGTGT 58.865 43.478 0.00 0.00 44.82 3.72
2753 5299 4.389374 AGGGATGTTGTCTACAAAGTGTG 58.611 43.478 0.00 0.00 40.89 3.82
2754 5300 4.706842 AGGGATGTTGTCTACAAAGTGT 57.293 40.909 0.00 0.00 40.89 3.55
2755 5301 6.092670 CACATAGGGATGTTGTCTACAAAGTG 59.907 42.308 0.00 0.00 44.18 3.16
2756 5302 6.173339 CACATAGGGATGTTGTCTACAAAGT 58.827 40.000 0.00 0.00 44.18 2.66
2757 5303 5.065218 GCACATAGGGATGTTGTCTACAAAG 59.935 44.000 0.00 0.00 44.18 2.77
2758 5304 4.941263 GCACATAGGGATGTTGTCTACAAA 59.059 41.667 0.00 0.00 44.18 2.83
2759 5305 4.225042 AGCACATAGGGATGTTGTCTACAA 59.775 41.667 0.00 0.00 44.18 2.41
2760 5306 3.774766 AGCACATAGGGATGTTGTCTACA 59.225 43.478 0.00 0.00 44.18 2.74
2761 5307 4.408182 AGCACATAGGGATGTTGTCTAC 57.592 45.455 0.00 0.00 44.18 2.59
2762 5308 4.225042 ACAAGCACATAGGGATGTTGTCTA 59.775 41.667 0.00 0.00 44.18 2.59
2763 5309 3.009473 ACAAGCACATAGGGATGTTGTCT 59.991 43.478 0.00 0.00 44.18 3.41
2764 5310 3.127548 CACAAGCACATAGGGATGTTGTC 59.872 47.826 0.00 0.00 44.18 3.18
2765 5311 3.084039 CACAAGCACATAGGGATGTTGT 58.916 45.455 0.00 0.00 44.18 3.32
2766 5312 2.159338 GCACAAGCACATAGGGATGTTG 60.159 50.000 0.00 0.00 44.18 3.33
2767 5313 2.094675 GCACAAGCACATAGGGATGTT 58.905 47.619 0.00 0.00 44.18 2.71
2780 5326 7.412137 AAATTTCTGTAAAAGATGCACAAGC 57.588 32.000 0.00 0.00 42.57 4.01
2781 5327 9.640974 CAAAAATTTCTGTAAAAGATGCACAAG 57.359 29.630 0.00 0.00 33.93 3.16
2782 5328 8.610896 CCAAAAATTTCTGTAAAAGATGCACAA 58.389 29.630 0.00 0.00 33.93 3.33
2783 5329 7.984050 TCCAAAAATTTCTGTAAAAGATGCACA 59.016 29.630 0.00 0.00 33.93 4.57
2784 5330 8.364129 TCCAAAAATTTCTGTAAAAGATGCAC 57.636 30.769 0.00 0.00 33.93 4.57
2785 5331 8.825745 GTTCCAAAAATTTCTGTAAAAGATGCA 58.174 29.630 0.00 0.00 33.93 3.96
2786 5332 9.045223 AGTTCCAAAAATTTCTGTAAAAGATGC 57.955 29.630 0.00 0.00 33.93 3.91
2795 5341 9.230122 ACATTTTGAAGTTCCAAAAATTTCTGT 57.770 25.926 6.24 7.93 45.54 3.41
2796 5342 9.493206 CACATTTTGAAGTTCCAAAAATTTCTG 57.507 29.630 6.24 7.46 45.54 3.02
2797 5343 9.447157 TCACATTTTGAAGTTCCAAAAATTTCT 57.553 25.926 6.24 0.00 45.54 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.