Multiple sequence alignment - TraesCS5A01G448500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G448500 chr5A 100.000 3075 0 0 1 3075 630929723 630932797 0.000000e+00 5679.0
1 TraesCS5A01G448500 chr5D 91.892 999 61 10 1539 2525 502028202 502029192 0.000000e+00 1378.0
2 TraesCS5A01G448500 chr5D 85.433 1016 93 29 2078 3075 502028787 502029765 0.000000e+00 1005.0
3 TraesCS5A01G448500 chr5D 91.460 726 32 11 794 1515 502027517 502028216 0.000000e+00 970.0
4 TraesCS5A01G448500 chr5D 98.066 362 6 1 5 365 502026719 502027080 2.010000e-176 628.0
5 TraesCS5A01G448500 chr5D 82.477 331 46 5 2054 2373 502028959 502029288 2.330000e-71 279.0
6 TraesCS5A01G448500 chr5D 80.120 332 46 11 2254 2576 502028717 502029037 2.380000e-56 230.0
7 TraesCS5A01G448500 chr5B 91.949 944 68 6 1551 2486 625966202 625967145 0.000000e+00 1315.0
8 TraesCS5A01G448500 chr5B 90.783 868 41 15 666 1515 625965359 625966205 0.000000e+00 1123.0
9 TraesCS5A01G448500 chr5B 94.493 690 22 7 1 687 625964677 625965353 0.000000e+00 1050.0
10 TraesCS5A01G448500 chr5B 85.285 965 84 28 2135 3075 625966865 625967795 0.000000e+00 942.0
11 TraesCS5A01G448500 chr5B 80.665 331 46 11 2254 2576 625966706 625967026 1.100000e-59 241.0
12 TraesCS5A01G448500 chr5B 78.351 388 55 11 2013 2373 625966938 625967323 1.110000e-54 224.0
13 TraesCS5A01G448500 chr5B 81.905 210 26 5 2177 2374 19547314 19547523 1.900000e-37 167.0
14 TraesCS5A01G448500 chr7B 84.524 252 23 7 2134 2373 26881383 26881630 5.130000e-58 235.0
15 TraesCS5A01G448500 chr7B 79.231 260 34 9 2207 2454 26881379 26881630 2.450000e-36 163.0
16 TraesCS5A01G448500 chr7B 94.286 35 2 0 2240 2274 522081132 522081166 2.000000e-03 54.7
17 TraesCS5A01G448500 chr7B 100.000 28 0 0 2027 2054 503153822 503153795 6.000000e-03 52.8
18 TraesCS5A01G448500 chr7D 79.537 259 35 11 2207 2454 79630296 79630547 5.270000e-38 169.0
19 TraesCS5A01G448500 chr1A 78.409 264 37 8 2830 3074 561339220 561339482 1.480000e-33 154.0
20 TraesCS5A01G448500 chr4B 77.256 277 30 22 2014 2259 60702697 60702971 6.920000e-27 132.0
21 TraesCS5A01G448500 chr3A 95.122 41 2 0 2014 2054 704779337 704779297 7.120000e-07 65.8
22 TraesCS5A01G448500 chr3A 94.737 38 2 0 2017 2054 704693570 704693533 3.310000e-05 60.2
23 TraesCS5A01G448500 chr3D 100.000 34 0 0 2702 2735 31389620 31389587 2.560000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G448500 chr5A 630929723 630932797 3074 False 5679.000000 5679 100.000000 1 3075 1 chr5A.!!$F1 3074
1 TraesCS5A01G448500 chr5D 502026719 502029765 3046 False 748.333333 1378 88.241333 5 3075 6 chr5D.!!$F1 3070
2 TraesCS5A01G448500 chr5B 625964677 625967795 3118 False 815.833333 1315 86.921000 1 3075 6 chr5B.!!$F2 3074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 1012 0.027979 CACAACCACAAGACGTGCAG 59.972 55.0 0.0 0.0 44.91 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2675 2996 0.320771 TGAGTGCCGAGGAGAAAAGC 60.321 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.026522 CCTCCGACCGAGAGATGTC 58.973 63.158 8.68 0.00 41.63 3.06
400 572 8.621532 TGTTGTTCTTAAGATCATAGTTGCTT 57.378 30.769 15.29 0.00 0.00 3.91
445 618 4.016113 ACAAGAAACGCTGACAAAAGTC 57.984 40.909 0.00 0.00 0.00 3.01
654 830 5.738909 TCTCACTTCCAATTCTGATTCCTC 58.261 41.667 0.00 0.00 0.00 3.71
725 935 4.519906 TCCTCCAAAAAGAACAGGACTT 57.480 40.909 0.00 0.00 0.00 3.01
726 936 4.867086 TCCTCCAAAAAGAACAGGACTTT 58.133 39.130 0.00 0.00 38.91 2.66
745 955 6.128795 GGACTTTAGCTAATTTGGATCGATCG 60.129 42.308 18.81 9.36 0.00 3.69
747 957 2.417719 AGCTAATTTGGATCGATCGGC 58.582 47.619 18.81 12.82 0.00 5.54
750 960 0.179056 AATTTGGATCGATCGGCCGT 60.179 50.000 27.15 12.96 0.00 5.68
751 961 0.600255 ATTTGGATCGATCGGCCGTC 60.600 55.000 27.15 20.07 0.00 4.79
752 962 2.947118 TTTGGATCGATCGGCCGTCG 62.947 60.000 31.06 31.06 40.30 5.12
796 1008 1.151777 CGCTCACAACCACAAGACGT 61.152 55.000 0.00 0.00 0.00 4.34
800 1012 0.027979 CACAACCACAAGACGTGCAG 59.972 55.000 0.00 0.00 44.91 4.41
804 1016 0.462375 ACCACAAGACGTGCAGTACA 59.538 50.000 0.00 0.00 44.91 2.90
864 1084 0.394488 CTCCTCCCTCGCTACACTCA 60.394 60.000 0.00 0.00 0.00 3.41
896 1116 0.538057 CACCACTTCCACCTGCATGT 60.538 55.000 0.00 0.00 0.00 3.21
903 1123 2.632544 CCACCTGCATGTGCCACTG 61.633 63.158 15.87 0.00 41.18 3.66
959 1179 2.122769 TCCTCCGTCCACACCCAA 60.123 61.111 0.00 0.00 0.00 4.12
969 1189 1.536174 CACACCCAAAGCCCCCAAT 60.536 57.895 0.00 0.00 0.00 3.16
1248 1468 1.219124 GCTCATCAACCTCCAGCGA 59.781 57.895 0.00 0.00 0.00 4.93
1390 1611 4.829492 ACTCTTACAAGGAAAAGCTGCATT 59.171 37.500 1.02 0.00 0.00 3.56
1470 1692 7.454260 AAGTGAAATGTGGAGTTAGGAATTC 57.546 36.000 0.00 0.00 0.00 2.17
1471 1693 5.643777 AGTGAAATGTGGAGTTAGGAATTCG 59.356 40.000 0.00 0.00 0.00 3.34
1521 1744 9.552695 TCCATCAGATACATATATATGATCCCC 57.447 37.037 26.05 11.62 43.26 4.81
1522 1745 8.766476 CCATCAGATACATATATATGATCCCCC 58.234 40.741 26.05 10.49 43.26 5.40
1523 1746 8.473219 CATCAGATACATATATATGATCCCCCG 58.527 40.741 26.05 13.36 43.26 5.73
1524 1747 6.437477 TCAGATACATATATATGATCCCCCGC 59.563 42.308 26.05 8.60 34.75 6.13
1525 1748 6.211384 CAGATACATATATATGATCCCCCGCA 59.789 42.308 26.05 3.49 32.64 5.69
1526 1749 6.787458 AGATACATATATATGATCCCCCGCAA 59.213 38.462 26.05 2.51 37.15 4.85
1527 1750 5.708736 ACATATATATGATCCCCCGCAAA 57.291 39.130 26.05 0.00 37.15 3.68
1528 1751 6.073447 ACATATATATGATCCCCCGCAAAA 57.927 37.500 26.05 0.00 37.15 2.44
1529 1752 6.489603 ACATATATATGATCCCCCGCAAAAA 58.510 36.000 26.05 0.00 37.15 1.94
1644 1867 9.515020 TCACACTGACAAATTTATTTTGACTTC 57.485 29.630 6.59 0.00 46.36 3.01
1898 2121 7.026562 TGCCATGAAATAACGATAAACACAAG 58.973 34.615 0.00 0.00 0.00 3.16
2046 2270 9.383519 GTTATGAAGAGTATCATTCTTTGGACA 57.616 33.333 0.00 0.00 40.44 4.02
2081 2305 5.178797 AGAGTATCATTCTTTGAACGGGTG 58.821 41.667 0.00 0.00 38.03 4.61
2089 2313 1.133025 CTTTGAACGGGTGGATCATGC 59.867 52.381 0.00 0.00 0.00 4.06
2114 2338 7.331934 GCTAATTATGGAAAGTATCATCGAGCA 59.668 37.037 0.00 0.00 0.00 4.26
2151 2375 7.709613 GTGGTCGTGTTAATTATGGAGAGTATT 59.290 37.037 0.00 0.00 0.00 1.89
2189 2413 7.038017 GGGAGGATCACATTAATTATGGAGAGA 60.038 40.741 0.00 0.00 39.41 3.10
2191 2415 9.213799 GAGGATCACATTAATTATGGAGAGAAC 57.786 37.037 0.00 0.00 38.64 3.01
2204 2429 3.323691 TGGAGAGAACCATTCTTTGACGA 59.676 43.478 0.00 0.00 40.87 4.20
2205 2430 3.929610 GGAGAGAACCATTCTTTGACGAG 59.070 47.826 0.00 0.00 40.87 4.18
2210 2435 5.322038 AGAACCATTCTTTGACGAGTCACG 61.322 45.833 5.30 0.83 41.96 4.35
2310 2535 8.692710 TCACGTTACTTATGGAGAGTATCATTT 58.307 33.333 0.00 0.00 37.82 2.32
2364 2633 1.663379 ATCATCGAGCGTTGGACGGA 61.663 55.000 2.48 0.00 42.82 4.69
2385 2697 6.127647 ACGGAAGGATCACGTTACTTATGTAA 60.128 38.462 0.00 0.00 37.61 2.41
2388 2700 7.977853 GGAAGGATCACGTTACTTATGTAAAGA 59.022 37.037 17.27 10.13 39.96 2.52
2443 2755 3.610040 AGTATGATTGAGCGTTGGACA 57.390 42.857 0.00 0.00 0.00 4.02
2489 2801 2.649531 ATCACTTTTTGGACGGGTGA 57.350 45.000 0.00 0.00 40.43 4.02
2494 2809 2.621526 ACTTTTTGGACGGGTGAATCAC 59.378 45.455 4.51 4.51 0.00 3.06
2532 2851 1.071542 TCATTCTTTGGACAGGACGCA 59.928 47.619 0.00 0.00 0.00 5.24
2542 2861 3.131396 GGACAGGACGCACTAATTATGG 58.869 50.000 0.00 0.00 0.00 2.74
2546 2865 5.250200 ACAGGACGCACTAATTATGGAAAA 58.750 37.500 0.00 0.00 0.00 2.29
2562 2881 4.438148 TGGAAAATATCATCGAGCGTTGA 58.562 39.130 6.16 6.16 0.00 3.18
2621 2942 5.964477 GGATCACTAGAATATGTATCCCCCA 59.036 44.000 0.00 0.00 0.00 4.96
2625 2946 6.215431 TCACTAGAATATGTATCCCCCATTGG 59.785 42.308 0.00 0.00 0.00 3.16
2629 2950 4.675063 ATATGTATCCCCCATTGGAACC 57.325 45.455 3.62 0.00 38.10 3.62
2635 2956 1.702840 CCCCATTGGAACCCATGGA 59.297 57.895 20.91 0.00 35.61 3.41
2668 2989 2.715046 AGCGGCAAATTGATTCTCTCA 58.285 42.857 1.45 0.00 0.00 3.27
2675 2996 2.322355 ATTGATTCTCTCACCCGCTG 57.678 50.000 0.00 0.00 32.17 5.18
2751 3072 1.026584 AAACCAACGTTTTCCCCTCG 58.973 50.000 0.00 0.00 39.18 4.63
2775 3096 4.417437 ACACTACTTCCTCTCCAGCTTTA 58.583 43.478 0.00 0.00 0.00 1.85
2786 3107 4.985538 TCTCCAGCTTTATTTTGGACACT 58.014 39.130 0.00 0.00 36.13 3.55
2880 3201 5.659525 TCCGATCTTGTTCTAAGGGTTATGA 59.340 40.000 0.00 0.00 0.00 2.15
2964 3285 5.877012 TGTTGAAGCATATTCCTGAAGAGAC 59.123 40.000 0.00 0.00 0.00 3.36
3010 3331 1.686115 CCACCATTCCCCTCATGAACC 60.686 57.143 0.00 0.00 0.00 3.62
3016 3337 2.825836 CCCTCATGAACCAGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
3024 3345 2.843401 TGAACCAGCGGCTTTAGTAA 57.157 45.000 0.00 0.00 0.00 2.24
3031 3352 2.092211 CAGCGGCTTTAGTAAGTTGTCG 59.908 50.000 0.00 3.40 33.74 4.35
3060 3381 6.092748 GGTCGACAAGCAAATCATTGTTTAT 58.907 36.000 18.91 0.00 39.66 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.549563 CCACAACTGTGCAGACATCTCT 60.550 50.000 6.17 0.00 44.34 3.10
71 72 2.016318 TCAGAAACCACAACTGTGCAG 58.984 47.619 4.23 0.00 44.34 4.41
445 618 3.415385 CGAAATGATCAAAATGCTACGCG 59.585 43.478 3.53 3.53 0.00 6.01
604 779 6.030228 GCTTGGAAGACAAATGTAATGCTAC 58.970 40.000 0.00 0.00 38.91 3.58
654 830 0.751277 TGCACAGTTGGTTGGACTGG 60.751 55.000 8.86 0.28 46.77 4.00
701 904 5.269189 AGTCCTGTTCTTTTTGGAGGAAAA 58.731 37.500 0.00 0.00 34.59 2.29
706 909 5.532779 AGCTAAAGTCCTGTTCTTTTTGGAG 59.467 40.000 0.00 0.00 36.65 3.86
707 910 5.445964 AGCTAAAGTCCTGTTCTTTTTGGA 58.554 37.500 0.00 0.00 36.65 3.53
708 911 5.774498 AGCTAAAGTCCTGTTCTTTTTGG 57.226 39.130 0.00 0.00 36.65 3.28
709 912 9.750125 AAATTAGCTAAAGTCCTGTTCTTTTTG 57.250 29.630 10.85 0.00 36.65 2.44
715 925 7.466050 CGATCCAAATTAGCTAAAGTCCTGTTC 60.466 40.741 10.85 1.22 0.00 3.18
725 935 3.994392 GCCGATCGATCCAAATTAGCTAA 59.006 43.478 18.66 8.99 0.00 3.09
726 936 3.585862 GCCGATCGATCCAAATTAGCTA 58.414 45.455 18.66 0.00 0.00 3.32
752 962 2.408050 AGAGCAGTTCACGAATGTGTC 58.592 47.619 0.00 0.00 46.49 3.67
753 963 2.408050 GAGAGCAGTTCACGAATGTGT 58.592 47.619 0.00 0.00 46.49 3.72
755 965 1.000163 ACGAGAGCAGTTCACGAATGT 60.000 47.619 10.89 0.00 41.62 2.71
756 966 1.702886 ACGAGAGCAGTTCACGAATG 58.297 50.000 10.89 0.00 41.62 2.67
757 967 2.728225 CGTACGAGAGCAGTTCACGAAT 60.728 50.000 10.44 0.00 41.62 3.34
758 968 1.399343 CGTACGAGAGCAGTTCACGAA 60.399 52.381 10.44 0.00 41.62 3.85
759 969 0.165295 CGTACGAGAGCAGTTCACGA 59.835 55.000 10.44 0.00 41.62 4.35
796 1008 3.439895 TCAGTTACACGTTGTACTGCA 57.560 42.857 13.22 0.00 34.75 4.41
800 1012 7.754027 AGAACAGATATCAGTTACACGTTGTAC 59.246 37.037 12.91 0.00 31.69 2.90
804 1016 6.920817 TGAGAACAGATATCAGTTACACGTT 58.079 36.000 12.91 0.00 0.00 3.99
864 1084 1.807814 AGTGGTGAAAGGTGGAGAGT 58.192 50.000 0.00 0.00 0.00 3.24
896 1116 2.106338 TCTCATTTCTCAACCAGTGGCA 59.894 45.455 9.78 0.00 0.00 4.92
903 1123 6.877611 TGGTTAGTTTCTCATTTCTCAACC 57.122 37.500 0.00 0.00 34.76 3.77
959 1179 1.078426 CGAGTTCGATTGGGGGCTT 60.078 57.895 0.00 0.00 43.02 4.35
969 1189 2.701780 GGAGCTCTGGCGAGTTCGA 61.702 63.158 14.64 0.00 45.32 3.71
1257 1478 2.281761 AAGGGCAGCGTGGTGAAG 60.282 61.111 2.76 0.00 0.00 3.02
1397 1618 3.004524 TGCGTTTTGTTTACATGGTACCC 59.995 43.478 10.07 0.00 0.00 3.69
1398 1619 4.226113 TGCGTTTTGTTTACATGGTACC 57.774 40.909 4.43 4.43 0.00 3.34
1400 1621 4.230657 GCATGCGTTTTGTTTACATGGTA 58.769 39.130 0.00 0.00 38.79 3.25
1401 1622 3.056304 GCATGCGTTTTGTTTACATGGT 58.944 40.909 0.00 0.00 38.79 3.55
1402 1623 3.055591 TGCATGCGTTTTGTTTACATGG 58.944 40.909 14.09 0.00 38.79 3.66
1403 1624 4.907188 ATGCATGCGTTTTGTTTACATG 57.093 36.364 14.09 0.00 40.80 3.21
1416 1637 1.361668 GGGCGGAGTATATGCATGCG 61.362 60.000 14.09 0.83 0.00 4.73
1545 1768 8.980481 AAGTTTTTGTTCCTCGGATATATCAT 57.020 30.769 14.60 0.00 0.00 2.45
1546 1769 8.801882 AAAGTTTTTGTTCCTCGGATATATCA 57.198 30.769 14.60 0.00 0.00 2.15
1548 1771 9.901172 ACTAAAGTTTTTGTTCCTCGGATATAT 57.099 29.630 0.00 0.00 0.00 0.86
1550 1773 9.159364 GTACTAAAGTTTTTGTTCCTCGGATAT 57.841 33.333 0.00 0.00 0.00 1.63
1551 1774 8.370182 AGTACTAAAGTTTTTGTTCCTCGGATA 58.630 33.333 0.00 0.00 0.00 2.59
1552 1775 7.222161 AGTACTAAAGTTTTTGTTCCTCGGAT 58.778 34.615 0.00 0.00 0.00 4.18
1553 1776 6.585416 AGTACTAAAGTTTTTGTTCCTCGGA 58.415 36.000 0.00 0.00 0.00 4.55
1651 1874 1.999648 TGCAAAGCCACCTGAAGAAT 58.000 45.000 0.00 0.00 0.00 2.40
1973 2196 3.288964 ACCAAACCAAACCACGACATAA 58.711 40.909 0.00 0.00 0.00 1.90
2046 2270 7.055314 AGAATGATACTCTCCATATCCTCCT 57.945 40.000 0.00 0.00 0.00 3.69
2081 2305 9.453572 TGATACTTTCCATAATTAGCATGATCC 57.546 33.333 0.00 0.00 0.00 3.36
2089 2313 8.763049 TGCTCGATGATACTTTCCATAATTAG 57.237 34.615 0.00 0.00 0.00 1.73
2114 2338 1.305549 ACGACCACCCCCGTCTAAT 60.306 57.895 0.00 0.00 33.23 1.73
2151 2375 3.648067 GTGATCCTCCCATCCACAGAATA 59.352 47.826 0.00 0.00 0.00 1.75
2178 2402 6.540189 CGTCAAAGAATGGTTCTCTCCATAAT 59.460 38.462 0.00 0.00 46.14 1.28
2189 2413 2.800544 CGTGACTCGTCAAAGAATGGTT 59.199 45.455 0.64 0.00 41.85 3.67
2210 2435 9.517361 CGCTCGATCATACTTTTCATAATTAAC 57.483 33.333 0.00 0.00 0.00 2.01
2275 2500 4.444306 CCATAAGTAACGTGATCCACCCAT 60.444 45.833 0.00 0.00 0.00 4.00
2276 2501 3.118555 CCATAAGTAACGTGATCCACCCA 60.119 47.826 0.00 0.00 0.00 4.51
2310 2535 6.885952 TTAATGTGATTCTTCCGTCCAAAA 57.114 33.333 0.00 0.00 0.00 2.44
2364 2633 9.886132 ATTCTTTACATAAGTAACGTGATCCTT 57.114 29.630 0.00 0.00 39.80 3.36
2388 2700 4.588899 TGTGATCCGTCCAAAGAATGATT 58.411 39.130 0.00 0.00 0.00 2.57
2395 2707 7.228507 TCCATAATTAATGTGATCCGTCCAAAG 59.771 37.037 0.00 0.00 33.34 2.77
2435 2747 0.944311 CGTGTTCCTCCTGTCCAACG 60.944 60.000 0.00 0.00 0.00 4.10
2443 2755 5.424252 TCTCCATAATTAACGTGTTCCTCCT 59.576 40.000 0.00 0.00 0.00 3.69
2503 2818 5.980116 CCTGTCCAAAGAATGATACTCTACG 59.020 44.000 0.00 0.00 0.00 3.51
2522 2837 4.054780 TCCATAATTAGTGCGTCCTGTC 57.945 45.455 0.00 0.00 0.00 3.51
2532 2851 8.873830 CGCTCGATGATATTTTCCATAATTAGT 58.126 33.333 0.00 0.00 0.00 2.24
2542 2861 4.892880 CGTTCAACGCTCGATGATATTTTC 59.107 41.667 0.00 0.00 33.65 2.29
2546 2865 2.394708 CCGTTCAACGCTCGATGATAT 58.605 47.619 3.77 0.00 40.91 1.63
2562 2881 6.749036 AAATATTCTAGTGATCCTCCCGTT 57.251 37.500 0.00 0.00 0.00 4.44
2597 2917 5.964477 TGGGGGATACATATTCTAGTGATCC 59.036 44.000 0.00 0.00 39.74 3.36
2621 2942 3.706086 GCTAATTGTCCATGGGTTCCAAT 59.294 43.478 13.02 12.10 36.95 3.16
2625 2946 4.781934 ACTAGCTAATTGTCCATGGGTTC 58.218 43.478 13.02 3.75 0.00 3.62
2629 2950 3.990469 CGCTACTAGCTAATTGTCCATGG 59.010 47.826 4.97 4.97 39.60 3.66
2635 2956 3.536956 TTGCCGCTACTAGCTAATTGT 57.463 42.857 6.50 0.00 39.60 2.71
2652 2973 2.478539 GCGGGTGAGAGAATCAATTTGC 60.479 50.000 0.00 0.00 40.43 3.68
2653 2974 3.012518 AGCGGGTGAGAGAATCAATTTG 58.987 45.455 0.00 0.00 40.43 2.32
2654 2975 3.012518 CAGCGGGTGAGAGAATCAATTT 58.987 45.455 0.00 0.00 40.43 1.82
2656 2977 1.745141 GCAGCGGGTGAGAGAATCAAT 60.745 52.381 12.03 0.00 40.43 2.57
2657 2978 0.391661 GCAGCGGGTGAGAGAATCAA 60.392 55.000 12.03 0.00 40.43 2.57
2668 2989 1.003233 GAGGAGAAAAGCAGCGGGT 60.003 57.895 0.00 0.00 0.00 5.28
2675 2996 0.320771 TGAGTGCCGAGGAGAAAAGC 60.321 55.000 0.00 0.00 0.00 3.51
2704 3025 1.777878 TGCAAGGAGAGGGTGGTTAAA 59.222 47.619 0.00 0.00 0.00 1.52
2751 3072 2.829120 AGCTGGAGAGGAAGTAGTGTTC 59.171 50.000 0.00 0.00 0.00 3.18
2775 3096 7.955918 AGATGCTTAGAAAAAGTGTCCAAAAT 58.044 30.769 0.00 0.00 0.00 1.82
2850 3171 4.399618 CCTTAGAACAAGATCGGAGACTGA 59.600 45.833 0.00 0.00 42.51 3.41
2964 3285 2.054232 ATGCCAATCCAGAGAGCTTG 57.946 50.000 0.00 0.00 0.00 4.01
3010 3331 2.092211 CGACAACTTACTAAAGCCGCTG 59.908 50.000 0.00 0.00 36.05 5.18
3016 3337 6.019640 TCGACCAAAACGACAACTTACTAAAG 60.020 38.462 0.00 0.00 35.49 1.85
3031 3352 3.701241 TGATTTGCTTGTCGACCAAAAC 58.299 40.909 18.20 16.32 32.85 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.