Multiple sequence alignment - TraesCS5A01G448200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G448200 chr5A 100.000 2627 0 0 2600 5226 629711316 629713942 0.000000e+00 4852.0
1 TraesCS5A01G448200 chr5A 100.000 2257 0 0 1 2257 629708717 629710973 0.000000e+00 4169.0
2 TraesCS5A01G448200 chr5A 90.663 739 62 5 4489 5226 18960935 18961667 0.000000e+00 976.0
3 TraesCS5A01G448200 chr5A 94.056 572 34 0 2602 3173 399434989 399435560 0.000000e+00 869.0
4 TraesCS5A01G448200 chr5A 93.706 572 36 0 2602 3173 623506741 623506170 0.000000e+00 857.0
5 TraesCS5A01G448200 chr5A 81.250 928 118 28 2603 3518 493027049 493027932 0.000000e+00 699.0
6 TraesCS5A01G448200 chr5A 81.070 935 120 26 2603 3522 585087585 585086693 0.000000e+00 693.0
7 TraesCS5A01G448200 chr5A 98.438 64 1 0 411 474 492867466 492867529 4.280000e-21 113.0
8 TraesCS5A01G448200 chr5B 86.965 1611 75 48 499 2077 625524610 625523103 0.000000e+00 1687.0
9 TraesCS5A01G448200 chr5B 96.115 978 25 6 3518 4485 625523106 625522132 0.000000e+00 1583.0
10 TraesCS5A01G448200 chr5B 94.490 980 28 12 3518 4485 630286377 630285412 0.000000e+00 1487.0
11 TraesCS5A01G448200 chr5B 92.868 687 30 11 1400 2077 630287050 630286374 0.000000e+00 979.0
12 TraesCS5A01G448200 chr5B 90.013 741 67 5 4487 5226 102383105 102382371 0.000000e+00 952.0
13 TraesCS5A01G448200 chr5B 91.605 679 42 11 3776 4448 629277378 629278047 0.000000e+00 924.0
14 TraesCS5A01G448200 chr5B 91.605 679 42 11 3776 4448 629359948 629360617 0.000000e+00 924.0
15 TraesCS5A01G448200 chr5B 78.448 928 134 38 2603 3522 488719924 488719055 3.560000e-151 545.0
16 TraesCS5A01G448200 chr5B 86.573 499 17 22 725 1203 628606450 628605982 6.040000e-139 505.0
17 TraesCS5A01G448200 chr5B 86.475 451 16 20 725 1156 625035724 625035300 2.220000e-123 453.0
18 TraesCS5A01G448200 chr5B 90.446 314 15 5 33 333 625524959 625524648 2.930000e-107 399.0
19 TraesCS5A01G448200 chr5B 94.222 225 6 3 1383 1607 629276297 629276514 2.330000e-88 337.0
20 TraesCS5A01G448200 chr5B 94.222 225 6 3 1383 1607 629358867 629359084 2.330000e-88 337.0
21 TraesCS5A01G448200 chr5B 92.432 185 9 2 1020 1203 625032893 625032713 5.190000e-65 259.0
22 TraesCS5A01G448200 chr5B 78.326 466 51 21 1597 2036 629276757 629277198 6.720000e-64 255.0
23 TraesCS5A01G448200 chr5B 78.326 466 51 21 1597 2036 629359327 629359768 6.720000e-64 255.0
24 TraesCS5A01G448200 chr5B 87.568 185 18 5 1545 1727 628587630 628587449 5.300000e-50 209.0
25 TraesCS5A01G448200 chr5B 79.070 301 37 8 1740 2036 625014553 625014275 3.210000e-42 183.0
26 TraesCS5A01G448200 chr5B 79.070 301 37 8 1740 2036 628587389 628587111 3.210000e-42 183.0
27 TraesCS5A01G448200 chr5B 93.443 122 8 0 3518 3639 629277206 629277327 1.160000e-41 182.0
28 TraesCS5A01G448200 chr5B 93.443 122 8 0 3518 3639 629359776 629359897 1.160000e-41 182.0
29 TraesCS5A01G448200 chr5B 94.000 100 5 1 3518 3617 625014267 625014169 3.260000e-32 150.0
30 TraesCS5A01G448200 chr5B 94.000 100 5 1 3518 3617 628587103 628587005 3.260000e-32 150.0
31 TraesCS5A01G448200 chr5D 86.498 1622 88 45 475 2077 501774944 501773435 0.000000e+00 1661.0
32 TraesCS5A01G448200 chr5D 96.319 978 24 5 3518 4485 501773438 501772463 0.000000e+00 1596.0
33 TraesCS5A01G448200 chr5D 90.095 737 70 3 4491 5226 354537616 354538350 0.000000e+00 953.0
34 TraesCS5A01G448200 chr5D 100.000 50 0 0 363 412 3144253 3144204 5.570000e-15 93.5
35 TraesCS5A01G448200 chr2A 93.770 915 34 5 2602 3516 753266759 753267650 0.000000e+00 1352.0
36 TraesCS5A01G448200 chr2A 95.455 572 24 1 2602 3173 769656077 769656646 0.000000e+00 911.0
37 TraesCS5A01G448200 chr2A 93.403 576 37 1 2602 3177 447000237 447000811 0.000000e+00 852.0
38 TraesCS5A01G448200 chr2A 80.043 927 130 23 2603 3518 750330232 750329350 2.050000e-178 636.0
39 TraesCS5A01G448200 chr2A 79.872 934 121 26 2603 3524 12242107 12241229 5.750000e-174 621.0
40 TraesCS5A01G448200 chr2A 95.098 102 5 0 2156 2257 753266555 753266656 1.510000e-35 161.0
41 TraesCS5A01G448200 chr2A 98.305 59 1 0 410 468 201723143 201723085 2.570000e-18 104.0
42 TraesCS5A01G448200 chr2A 83.333 72 8 4 2071 2140 34505576 34505507 4.370000e-06 63.9
43 TraesCS5A01G448200 chr7A 93.270 847 46 9 965 1808 676591941 676591103 0.000000e+00 1238.0
44 TraesCS5A01G448200 chr7A 93.706 572 36 0 2602 3173 61799160 61798589 0.000000e+00 857.0
45 TraesCS5A01G448200 chr7A 80.151 927 132 25 2603 3518 87163251 87164136 0.000000e+00 645.0
46 TraesCS5A01G448200 chr7A 88.525 61 5 1 3718 3778 8523387 8523445 7.260000e-09 73.1
47 TraesCS5A01G448200 chr3A 93.246 844 46 8 967 1808 580560884 580561718 0.000000e+00 1232.0
48 TraesCS5A01G448200 chr3A 92.882 576 35 1 2602 3177 53292442 53291873 0.000000e+00 832.0
49 TraesCS5A01G448200 chr3A 81.661 927 118 24 2603 3518 696704203 696705088 0.000000e+00 723.0
50 TraesCS5A01G448200 chr3A 80.973 925 128 23 2603 3520 81653925 81654808 0.000000e+00 689.0
51 TraesCS5A01G448200 chr3A 98.462 65 1 0 410 474 725808497 725808561 1.190000e-21 115.0
52 TraesCS5A01G448200 chr3A 82.895 76 8 5 2067 2140 32101254 32101326 4.370000e-06 63.9
53 TraesCS5A01G448200 chr3A 79.787 94 10 2 3718 3804 552797567 552797658 5.650000e-05 60.2
54 TraesCS5A01G448200 chr7B 90.528 739 68 2 4490 5226 161606288 161605550 0.000000e+00 976.0
55 TraesCS5A01G448200 chr7B 90.431 742 66 5 4488 5226 117629446 117630185 0.000000e+00 972.0
56 TraesCS5A01G448200 chr7B 89.459 740 72 5 4489 5226 677751651 677750916 0.000000e+00 929.0
57 TraesCS5A01G448200 chr7B 78.873 923 130 40 2603 3518 4607552 4608416 9.820000e-157 564.0
58 TraesCS5A01G448200 chr7B 92.593 54 2 1 3721 3774 539786206 539786257 5.610000e-10 76.8
59 TraesCS5A01G448200 chr7B 87.879 66 5 3 3730 3794 159527330 159527393 2.020000e-09 75.0
60 TraesCS5A01G448200 chr7B 82.895 76 7 6 2074 2146 692405861 692405789 4.370000e-06 63.9
61 TraesCS5A01G448200 chr4D 90.379 738 70 1 4488 5224 425281033 425281770 0.000000e+00 968.0
62 TraesCS5A01G448200 chr4D 100.000 50 0 0 363 412 123630074 123630123 5.570000e-15 93.5
63 TraesCS5A01G448200 chr4D 100.000 50 0 0 363 412 135013222 135013173 5.570000e-15 93.5
64 TraesCS5A01G448200 chr7D 89.459 740 73 3 4492 5226 495333119 495332380 0.000000e+00 929.0
65 TraesCS5A01G448200 chr7D 100.000 50 0 0 363 412 6950217 6950266 5.570000e-15 93.5
66 TraesCS5A01G448200 chr2B 89.310 739 75 4 4490 5226 449081623 449082359 0.000000e+00 924.0
67 TraesCS5A01G448200 chr2B 87.097 341 13 14 3191 3518 77860543 77860865 1.790000e-94 357.0
68 TraesCS5A01G448200 chr2B 93.846 65 4 0 410 474 357522457 357522521 1.200000e-16 99.0
69 TraesCS5A01G448200 chr2B 82.418 91 12 2 2073 2163 96626630 96626716 5.610000e-10 76.8
70 TraesCS5A01G448200 chr2B 80.435 92 9 2 3718 3802 584130166 584130255 1.570000e-05 62.1
71 TraesCS5A01G448200 chr2B 82.432 74 9 4 2069 2140 736107137 736107208 1.570000e-05 62.1
72 TraesCS5A01G448200 chr6A 95.280 572 27 0 2602 3173 583986929 583987500 0.000000e+00 907.0
73 TraesCS5A01G448200 chr6A 93.007 572 40 0 2602 3173 593790172 593790743 0.000000e+00 835.0
74 TraesCS5A01G448200 chr6A 89.531 277 8 3 3251 3521 109140502 109140763 1.080000e-86 331.0
75 TraesCS5A01G448200 chr1A 89.292 551 50 5 2631 3180 64850409 64850951 0.000000e+00 682.0
76 TraesCS5A01G448200 chr1A 98.462 65 1 0 410 474 94618638 94618702 1.190000e-21 115.0
77 TraesCS5A01G448200 chr1A 100.000 50 0 0 363 412 115743836 115743787 5.570000e-15 93.5
78 TraesCS5A01G448200 chr1A 80.220 91 9 3 3718 3801 495674810 495674898 5.650000e-05 60.2
79 TraesCS5A01G448200 chrUn 80.305 919 128 27 2617 3521 130102554 130101675 0.000000e+00 645.0
80 TraesCS5A01G448200 chrUn 100.000 50 0 0 363 412 40095235 40095186 5.570000e-15 93.5
81 TraesCS5A01G448200 chrUn 100.000 50 0 0 363 412 171029430 171029479 5.570000e-15 93.5
82 TraesCS5A01G448200 chrUn 84.058 69 7 4 2074 2140 346458766 346458832 4.370000e-06 63.9
83 TraesCS5A01G448200 chr1B 78.471 929 135 34 2603 3524 573368729 573367859 9.890000e-152 547.0
84 TraesCS5A01G448200 chr1B 96.923 65 2 0 410 474 53315803 53315867 5.530000e-20 110.0
85 TraesCS5A01G448200 chr1B 100.000 50 0 0 363 412 338958525 338958476 5.570000e-15 93.5
86 TraesCS5A01G448200 chr4B 87.906 339 18 10 3191 3523 570118933 570118612 1.370000e-100 377.0
87 TraesCS5A01G448200 chr4A 98.462 65 1 0 410 474 67608720 67608784 1.190000e-21 115.0
88 TraesCS5A01G448200 chr4A 98.462 65 1 0 410 474 246686346 246686410 1.190000e-21 115.0
89 TraesCS5A01G448200 chr3B 98.462 65 1 0 410 474 797567422 797567358 1.190000e-21 115.0
90 TraesCS5A01G448200 chr3B 90.909 55 4 1 3721 3775 86108405 86108352 7.260000e-09 73.1
91 TraesCS5A01G448200 chr1D 100.000 50 0 0 363 412 141334677 141334628 5.570000e-15 93.5
92 TraesCS5A01G448200 chr3D 92.982 57 1 3 3718 3774 614199314 614199261 4.340000e-11 80.5
93 TraesCS5A01G448200 chr2D 82.292 96 13 3 2070 2163 597893561 597893468 4.340000e-11 80.5
94 TraesCS5A01G448200 chr6B 84.416 77 12 0 2074 2150 460191995 460192071 5.610000e-10 76.8
95 TraesCS5A01G448200 chr6B 85.075 67 6 4 2073 2137 481436875 481436811 1.210000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G448200 chr5A 629708717 629713942 5225 False 4510.5 4852 100.000000 1 5226 2 chr5A.!!$F5 5225
1 TraesCS5A01G448200 chr5A 18960935 18961667 732 False 976.0 976 90.663000 4489 5226 1 chr5A.!!$F1 737
2 TraesCS5A01G448200 chr5A 399434989 399435560 571 False 869.0 869 94.056000 2602 3173 1 chr5A.!!$F2 571
3 TraesCS5A01G448200 chr5A 623506170 623506741 571 True 857.0 857 93.706000 2602 3173 1 chr5A.!!$R2 571
4 TraesCS5A01G448200 chr5A 493027049 493027932 883 False 699.0 699 81.250000 2603 3518 1 chr5A.!!$F4 915
5 TraesCS5A01G448200 chr5A 585086693 585087585 892 True 693.0 693 81.070000 2603 3522 1 chr5A.!!$R1 919
6 TraesCS5A01G448200 chr5B 630285412 630287050 1638 True 1233.0 1487 93.679000 1400 4485 2 chr5B.!!$R8 3085
7 TraesCS5A01G448200 chr5B 625522132 625524959 2827 True 1223.0 1687 91.175333 33 4485 3 chr5B.!!$R6 4452
8 TraesCS5A01G448200 chr5B 102382371 102383105 734 True 952.0 952 90.013000 4487 5226 1 chr5B.!!$R1 739
9 TraesCS5A01G448200 chr5B 488719055 488719924 869 True 545.0 545 78.448000 2603 3522 1 chr5B.!!$R2 919
10 TraesCS5A01G448200 chr5B 629276297 629278047 1750 False 424.5 924 89.399000 1383 4448 4 chr5B.!!$F1 3065
11 TraesCS5A01G448200 chr5B 629358867 629360617 1750 False 424.5 924 89.399000 1383 4448 4 chr5B.!!$F2 3065
12 TraesCS5A01G448200 chr5B 625032713 625035724 3011 True 356.0 453 89.453500 725 1203 2 chr5B.!!$R5 478
13 TraesCS5A01G448200 chr5D 501772463 501774944 2481 True 1628.5 1661 91.408500 475 4485 2 chr5D.!!$R2 4010
14 TraesCS5A01G448200 chr5D 354537616 354538350 734 False 953.0 953 90.095000 4491 5226 1 chr5D.!!$F1 735
15 TraesCS5A01G448200 chr2A 769656077 769656646 569 False 911.0 911 95.455000 2602 3173 1 chr2A.!!$F2 571
16 TraesCS5A01G448200 chr2A 447000237 447000811 574 False 852.0 852 93.403000 2602 3177 1 chr2A.!!$F1 575
17 TraesCS5A01G448200 chr2A 753266555 753267650 1095 False 756.5 1352 94.434000 2156 3516 2 chr2A.!!$F3 1360
18 TraesCS5A01G448200 chr2A 750329350 750330232 882 True 636.0 636 80.043000 2603 3518 1 chr2A.!!$R4 915
19 TraesCS5A01G448200 chr2A 12241229 12242107 878 True 621.0 621 79.872000 2603 3524 1 chr2A.!!$R1 921
20 TraesCS5A01G448200 chr7A 676591103 676591941 838 True 1238.0 1238 93.270000 965 1808 1 chr7A.!!$R2 843
21 TraesCS5A01G448200 chr7A 61798589 61799160 571 True 857.0 857 93.706000 2602 3173 1 chr7A.!!$R1 571
22 TraesCS5A01G448200 chr7A 87163251 87164136 885 False 645.0 645 80.151000 2603 3518 1 chr7A.!!$F2 915
23 TraesCS5A01G448200 chr3A 580560884 580561718 834 False 1232.0 1232 93.246000 967 1808 1 chr3A.!!$F4 841
24 TraesCS5A01G448200 chr3A 53291873 53292442 569 True 832.0 832 92.882000 2602 3177 1 chr3A.!!$R1 575
25 TraesCS5A01G448200 chr3A 696704203 696705088 885 False 723.0 723 81.661000 2603 3518 1 chr3A.!!$F5 915
26 TraesCS5A01G448200 chr3A 81653925 81654808 883 False 689.0 689 80.973000 2603 3520 1 chr3A.!!$F2 917
27 TraesCS5A01G448200 chr7B 161605550 161606288 738 True 976.0 976 90.528000 4490 5226 1 chr7B.!!$R1 736
28 TraesCS5A01G448200 chr7B 117629446 117630185 739 False 972.0 972 90.431000 4488 5226 1 chr7B.!!$F2 738
29 TraesCS5A01G448200 chr7B 677750916 677751651 735 True 929.0 929 89.459000 4489 5226 1 chr7B.!!$R2 737
30 TraesCS5A01G448200 chr7B 4607552 4608416 864 False 564.0 564 78.873000 2603 3518 1 chr7B.!!$F1 915
31 TraesCS5A01G448200 chr4D 425281033 425281770 737 False 968.0 968 90.379000 4488 5224 1 chr4D.!!$F2 736
32 TraesCS5A01G448200 chr7D 495332380 495333119 739 True 929.0 929 89.459000 4492 5226 1 chr7D.!!$R1 734
33 TraesCS5A01G448200 chr2B 449081623 449082359 736 False 924.0 924 89.310000 4490 5226 1 chr2B.!!$F4 736
34 TraesCS5A01G448200 chr6A 583986929 583987500 571 False 907.0 907 95.280000 2602 3173 1 chr6A.!!$F2 571
35 TraesCS5A01G448200 chr6A 593790172 593790743 571 False 835.0 835 93.007000 2602 3173 1 chr6A.!!$F3 571
36 TraesCS5A01G448200 chr1A 64850409 64850951 542 False 682.0 682 89.292000 2631 3180 1 chr1A.!!$F1 549
37 TraesCS5A01G448200 chrUn 130101675 130102554 879 True 645.0 645 80.305000 2617 3521 1 chrUn.!!$R2 904
38 TraesCS5A01G448200 chr1B 573367859 573368729 870 True 547.0 547 78.471000 2603 3524 1 chr1B.!!$R2 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.388520 CGCCATCAGACGTCAACTCA 60.389 55.0 19.5 0.0 0.00 3.41 F
1381 3987 0.399091 GGTACCCACCTACCCTACCC 60.399 65.0 0.0 0.0 42.11 3.69 F
2835 5736 0.394938 ACACGGTACAAGACCATGCA 59.605 50.0 0.0 0.0 45.78 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 4003 0.037447 AAGCAGGAGCAAGAGGAACC 59.963 55.0 0.00 0.0 45.49 3.62 R
3059 5960 0.319211 ATCGTTCGCCGTGAAGAACA 60.319 50.0 8.70 0.0 44.94 3.18 R
4824 7778 0.323629 CAGTTAGACCGGGCAAGGAA 59.676 55.0 11.69 0.0 34.73 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203294 ACAACCACCCAACCGCTC 60.203 61.111 0.00 0.00 0.00 5.03
18 19 2.203280 CAACCACCCAACCGCTCA 60.203 61.111 0.00 0.00 0.00 4.26
19 20 1.603455 CAACCACCCAACCGCTCAT 60.603 57.895 0.00 0.00 0.00 2.90
20 21 1.303317 AACCACCCAACCGCTCATC 60.303 57.895 0.00 0.00 0.00 2.92
21 22 2.063015 AACCACCCAACCGCTCATCA 62.063 55.000 0.00 0.00 0.00 3.07
22 23 1.077501 CCACCCAACCGCTCATCAT 60.078 57.895 0.00 0.00 0.00 2.45
23 24 1.378882 CCACCCAACCGCTCATCATG 61.379 60.000 0.00 0.00 0.00 3.07
24 25 1.750399 ACCCAACCGCTCATCATGC 60.750 57.895 0.00 0.00 0.00 4.06
84 85 0.388520 CGCCATCAGACGTCAACTCA 60.389 55.000 19.50 0.00 0.00 3.41
110 111 2.752322 TACTCAACGAACGCACCCGG 62.752 60.000 0.00 0.00 39.22 5.73
185 186 1.288127 GCAGCCAGCTTCAACTTGG 59.712 57.895 0.00 0.00 41.15 3.61
187 188 0.879765 CAGCCAGCTTCAACTTGGAG 59.120 55.000 0.00 0.00 33.76 3.86
189 190 1.143684 AGCCAGCTTCAACTTGGAGAA 59.856 47.619 0.71 0.00 33.76 2.87
190 191 1.538950 GCCAGCTTCAACTTGGAGAAG 59.461 52.381 0.71 0.00 43.12 2.85
191 192 2.856222 CCAGCTTCAACTTGGAGAAGT 58.144 47.619 0.71 0.00 44.79 3.01
192 193 3.807209 GCCAGCTTCAACTTGGAGAAGTA 60.807 47.826 0.71 0.00 41.87 2.24
193 194 3.999663 CCAGCTTCAACTTGGAGAAGTAG 59.000 47.826 0.71 0.00 41.87 2.57
194 195 3.434984 CAGCTTCAACTTGGAGAAGTAGC 59.565 47.826 0.71 0.00 41.87 3.58
195 196 3.071602 AGCTTCAACTTGGAGAAGTAGCA 59.928 43.478 0.71 0.00 41.87 3.49
200 213 6.959639 TCAACTTGGAGAAGTAGCATTTTT 57.040 33.333 0.00 0.00 41.87 1.94
253 266 0.671781 CTCAGCCCCGTCTTGTTGAG 60.672 60.000 0.00 0.00 34.29 3.02
266 279 3.888930 TCTTGTTGAGGGTGAATGAAACC 59.111 43.478 0.00 0.00 36.94 3.27
273 286 3.157087 AGGGTGAATGAAACCATGTCAC 58.843 45.455 2.59 2.59 39.65 3.67
325 338 5.284864 TGTCAGTATCGATTCTTGATGAGC 58.715 41.667 1.71 0.00 0.00 4.26
328 341 2.160822 ATCGATTCTTGATGAGCCGG 57.839 50.000 0.00 0.00 0.00 6.13
333 346 2.852495 TTCTTGATGAGCCGGCGGTC 62.852 60.000 28.82 22.37 37.01 4.79
338 351 2.499205 TGAGCCGGCGGTCATAAG 59.501 61.111 28.82 0.00 41.50 1.73
339 352 2.355986 TGAGCCGGCGGTCATAAGT 61.356 57.895 28.82 0.00 41.50 2.24
340 353 1.591863 GAGCCGGCGGTCATAAGTC 60.592 63.158 28.82 5.69 36.48 3.01
341 354 2.960129 GCCGGCGGTCATAAGTCG 60.960 66.667 28.82 0.00 34.97 4.18
345 358 3.395669 GCGGTCATAAGTCGCCAC 58.604 61.111 0.00 0.00 43.17 5.01
346 359 2.171725 GCGGTCATAAGTCGCCACC 61.172 63.158 0.00 0.00 43.17 4.61
347 360 1.515954 CGGTCATAAGTCGCCACCT 59.484 57.895 0.00 0.00 0.00 4.00
348 361 0.527817 CGGTCATAAGTCGCCACCTC 60.528 60.000 0.00 0.00 0.00 3.85
349 362 0.824759 GGTCATAAGTCGCCACCTCT 59.175 55.000 0.00 0.00 0.00 3.69
350 363 1.207329 GGTCATAAGTCGCCACCTCTT 59.793 52.381 0.00 0.00 0.00 2.85
351 364 2.271800 GTCATAAGTCGCCACCTCTTG 58.728 52.381 0.00 0.00 0.00 3.02
352 365 2.094182 GTCATAAGTCGCCACCTCTTGA 60.094 50.000 0.00 0.00 0.00 3.02
353 366 2.766263 TCATAAGTCGCCACCTCTTGAT 59.234 45.455 0.00 0.00 0.00 2.57
354 367 2.961526 TAAGTCGCCACCTCTTGATC 57.038 50.000 0.00 0.00 0.00 2.92
356 369 1.270907 AGTCGCCACCTCTTGATCTT 58.729 50.000 0.00 0.00 0.00 2.40
357 370 2.457598 AGTCGCCACCTCTTGATCTTA 58.542 47.619 0.00 0.00 0.00 2.10
359 372 3.068873 AGTCGCCACCTCTTGATCTTATC 59.931 47.826 0.00 0.00 0.00 1.75
360 373 3.068873 GTCGCCACCTCTTGATCTTATCT 59.931 47.826 0.00 0.00 0.00 1.98
361 374 3.706594 TCGCCACCTCTTGATCTTATCTT 59.293 43.478 0.00 0.00 0.00 2.40
362 375 4.893524 TCGCCACCTCTTGATCTTATCTTA 59.106 41.667 0.00 0.00 0.00 2.10
363 376 5.010112 TCGCCACCTCTTGATCTTATCTTAG 59.990 44.000 0.00 0.00 0.00 2.18
364 377 4.994217 GCCACCTCTTGATCTTATCTTAGC 59.006 45.833 0.00 0.00 0.00 3.09
365 378 5.453903 GCCACCTCTTGATCTTATCTTAGCA 60.454 44.000 0.00 0.00 0.00 3.49
366 379 6.586344 CCACCTCTTGATCTTATCTTAGCAA 58.414 40.000 0.00 0.00 0.00 3.91
367 380 7.050377 CCACCTCTTGATCTTATCTTAGCAAA 58.950 38.462 0.00 0.00 0.00 3.68
368 381 7.226325 CCACCTCTTGATCTTATCTTAGCAAAG 59.774 40.741 0.00 0.00 0.00 2.77
369 382 7.984050 CACCTCTTGATCTTATCTTAGCAAAGA 59.016 37.037 0.00 0.03 45.63 2.52
370 383 8.543774 ACCTCTTGATCTTATCTTAGCAAAGAA 58.456 33.333 0.00 0.00 44.75 2.52
371 384 9.558396 CCTCTTGATCTTATCTTAGCAAAGAAT 57.442 33.333 0.00 0.00 44.75 2.40
382 395 8.674263 ATCTTAGCAAAGAATGAGAAGTATGG 57.326 34.615 0.00 0.00 44.75 2.74
383 396 6.540189 TCTTAGCAAAGAATGAGAAGTATGGC 59.460 38.462 0.00 0.00 38.81 4.40
384 397 4.853007 AGCAAAGAATGAGAAGTATGGCT 58.147 39.130 0.00 0.00 0.00 4.75
385 398 5.259632 AGCAAAGAATGAGAAGTATGGCTT 58.740 37.500 0.00 0.00 40.76 4.35
386 399 5.125097 AGCAAAGAATGAGAAGTATGGCTTG 59.875 40.000 0.00 0.00 37.59 4.01
387 400 5.678107 GCAAAGAATGAGAAGTATGGCTTGG 60.678 44.000 0.00 0.00 37.59 3.61
388 401 3.549794 AGAATGAGAAGTATGGCTTGGC 58.450 45.455 0.00 0.00 37.59 4.52
389 402 3.201708 AGAATGAGAAGTATGGCTTGGCT 59.798 43.478 0.00 0.00 37.59 4.75
390 403 4.410228 AGAATGAGAAGTATGGCTTGGCTA 59.590 41.667 0.00 0.00 37.59 3.93
391 404 3.827008 TGAGAAGTATGGCTTGGCTAG 57.173 47.619 0.00 0.00 37.59 3.42
392 405 2.435805 TGAGAAGTATGGCTTGGCTAGG 59.564 50.000 0.00 0.00 37.59 3.02
393 406 1.771255 AGAAGTATGGCTTGGCTAGGG 59.229 52.381 0.00 0.00 37.59 3.53
394 407 1.768870 GAAGTATGGCTTGGCTAGGGA 59.231 52.381 0.00 0.00 37.59 4.20
395 408 1.893315 AGTATGGCTTGGCTAGGGAA 58.107 50.000 0.00 0.00 0.00 3.97
396 409 1.771255 AGTATGGCTTGGCTAGGGAAG 59.229 52.381 0.00 0.00 0.00 3.46
409 422 1.196012 AGGGAAGCAGTAGTAGTGGC 58.804 55.000 7.11 0.01 0.00 5.01
410 423 0.902531 GGGAAGCAGTAGTAGTGGCA 59.097 55.000 7.11 0.00 0.00 4.92
411 424 1.134670 GGGAAGCAGTAGTAGTGGCAG 60.135 57.143 7.11 0.00 0.00 4.85
412 425 1.550976 GGAAGCAGTAGTAGTGGCAGT 59.449 52.381 7.11 0.00 0.00 4.40
413 426 2.028020 GGAAGCAGTAGTAGTGGCAGTT 60.028 50.000 0.00 0.00 0.00 3.16
414 427 3.194968 GGAAGCAGTAGTAGTGGCAGTTA 59.805 47.826 0.00 0.00 0.00 2.24
415 428 4.425520 GAAGCAGTAGTAGTGGCAGTTAG 58.574 47.826 0.00 0.00 0.00 2.34
416 429 3.432378 AGCAGTAGTAGTGGCAGTTAGT 58.568 45.455 0.00 0.00 0.00 2.24
417 430 3.193691 AGCAGTAGTAGTGGCAGTTAGTG 59.806 47.826 0.00 2.36 0.00 2.74
418 431 3.056749 GCAGTAGTAGTGGCAGTTAGTGT 60.057 47.826 0.00 0.00 0.00 3.55
419 432 4.486090 CAGTAGTAGTGGCAGTTAGTGTG 58.514 47.826 0.00 0.00 0.00 3.82
420 433 4.217767 CAGTAGTAGTGGCAGTTAGTGTGA 59.782 45.833 0.00 0.00 0.00 3.58
421 434 5.017490 AGTAGTAGTGGCAGTTAGTGTGAT 58.983 41.667 0.00 0.00 0.00 3.06
422 435 4.891992 AGTAGTGGCAGTTAGTGTGATT 57.108 40.909 0.00 0.00 0.00 2.57
423 436 5.228945 AGTAGTGGCAGTTAGTGTGATTT 57.771 39.130 0.00 0.00 0.00 2.17
424 437 5.621193 AGTAGTGGCAGTTAGTGTGATTTT 58.379 37.500 0.00 0.00 0.00 1.82
425 438 5.701290 AGTAGTGGCAGTTAGTGTGATTTTC 59.299 40.000 0.00 0.00 0.00 2.29
426 439 4.718961 AGTGGCAGTTAGTGTGATTTTCT 58.281 39.130 0.00 0.00 0.00 2.52
427 440 4.516698 AGTGGCAGTTAGTGTGATTTTCTG 59.483 41.667 0.00 0.00 0.00 3.02
428 441 3.820467 TGGCAGTTAGTGTGATTTTCTGG 59.180 43.478 0.00 0.00 0.00 3.86
429 442 4.072131 GGCAGTTAGTGTGATTTTCTGGA 58.928 43.478 0.00 0.00 0.00 3.86
430 443 4.154918 GGCAGTTAGTGTGATTTTCTGGAG 59.845 45.833 0.00 0.00 0.00 3.86
431 444 4.997395 GCAGTTAGTGTGATTTTCTGGAGA 59.003 41.667 0.00 0.00 0.00 3.71
432 445 5.470098 GCAGTTAGTGTGATTTTCTGGAGAA 59.530 40.000 0.00 0.00 0.00 2.87
433 446 6.566753 GCAGTTAGTGTGATTTTCTGGAGAAC 60.567 42.308 0.00 0.00 33.13 3.01
434 447 6.708054 CAGTTAGTGTGATTTTCTGGAGAACT 59.292 38.462 0.00 0.00 33.13 3.01
435 448 7.227512 CAGTTAGTGTGATTTTCTGGAGAACTT 59.772 37.037 0.00 0.00 33.13 2.66
436 449 7.775561 AGTTAGTGTGATTTTCTGGAGAACTTT 59.224 33.333 0.00 0.00 33.13 2.66
437 450 8.406297 GTTAGTGTGATTTTCTGGAGAACTTTT 58.594 33.333 0.00 0.00 33.13 2.27
438 451 7.032377 AGTGTGATTTTCTGGAGAACTTTTC 57.968 36.000 0.00 0.00 33.13 2.29
439 452 6.830838 AGTGTGATTTTCTGGAGAACTTTTCT 59.169 34.615 0.00 0.00 44.21 2.52
440 453 6.914757 GTGTGATTTTCTGGAGAACTTTTCTG 59.085 38.462 0.00 0.00 40.87 3.02
441 454 6.039717 TGTGATTTTCTGGAGAACTTTTCTGG 59.960 38.462 0.00 0.00 40.87 3.86
442 455 4.918810 TTTTCTGGAGAACTTTTCTGGC 57.081 40.909 0.00 0.00 40.87 4.85
443 456 3.864789 TTCTGGAGAACTTTTCTGGCT 57.135 42.857 0.00 0.00 40.87 4.75
444 457 3.864789 TCTGGAGAACTTTTCTGGCTT 57.135 42.857 0.00 0.00 40.87 4.35
445 458 4.170468 TCTGGAGAACTTTTCTGGCTTT 57.830 40.909 0.00 0.00 40.87 3.51
446 459 3.885297 TCTGGAGAACTTTTCTGGCTTTG 59.115 43.478 0.00 0.00 40.87 2.77
447 460 2.362077 TGGAGAACTTTTCTGGCTTTGC 59.638 45.455 0.00 0.00 40.87 3.68
460 473 2.975410 GCTTTGCCATTTTTCCTTGC 57.025 45.000 0.00 0.00 0.00 4.01
461 474 2.497138 GCTTTGCCATTTTTCCTTGCT 58.503 42.857 0.00 0.00 0.00 3.91
462 475 2.880268 GCTTTGCCATTTTTCCTTGCTT 59.120 40.909 0.00 0.00 0.00 3.91
463 476 3.316029 GCTTTGCCATTTTTCCTTGCTTT 59.684 39.130 0.00 0.00 0.00 3.51
464 477 4.790444 GCTTTGCCATTTTTCCTTGCTTTG 60.790 41.667 0.00 0.00 0.00 2.77
465 478 2.848691 TGCCATTTTTCCTTGCTTTGG 58.151 42.857 0.00 0.00 0.00 3.28
466 479 2.437281 TGCCATTTTTCCTTGCTTTGGA 59.563 40.909 0.00 0.00 0.00 3.53
467 480 3.069289 GCCATTTTTCCTTGCTTTGGAG 58.931 45.455 0.00 0.00 34.76 3.86
468 481 3.244181 GCCATTTTTCCTTGCTTTGGAGA 60.244 43.478 0.00 0.00 34.76 3.71
469 482 4.563061 CCATTTTTCCTTGCTTTGGAGAG 58.437 43.478 0.00 0.00 34.76 3.20
470 483 3.733443 TTTTTCCTTGCTTTGGAGAGC 57.267 42.857 0.00 0.00 43.00 4.09
471 484 2.664402 TTTCCTTGCTTTGGAGAGCT 57.336 45.000 0.00 0.00 43.11 4.09
472 485 3.788227 TTTCCTTGCTTTGGAGAGCTA 57.212 42.857 0.00 0.00 43.11 3.32
473 486 3.788227 TTCCTTGCTTTGGAGAGCTAA 57.212 42.857 0.00 0.00 43.11 3.09
474 487 3.788227 TCCTTGCTTTGGAGAGCTAAA 57.212 42.857 0.00 0.00 43.11 1.85
475 488 3.679389 TCCTTGCTTTGGAGAGCTAAAG 58.321 45.455 2.84 2.84 43.21 1.85
476 489 2.751806 CCTTGCTTTGGAGAGCTAAAGG 59.248 50.000 8.42 2.78 41.37 3.11
477 490 2.496899 TGCTTTGGAGAGCTAAAGGG 57.503 50.000 8.42 0.00 41.37 3.95
478 491 1.004745 TGCTTTGGAGAGCTAAAGGGG 59.995 52.381 8.42 0.00 41.37 4.79
487 500 4.141597 GGAGAGCTAAAGGGGGATATATGC 60.142 50.000 0.00 0.00 0.00 3.14
493 506 1.414158 AGGGGGATATATGCGGATCG 58.586 55.000 0.00 0.00 0.00 3.69
495 508 1.971357 GGGGGATATATGCGGATCGAT 59.029 52.381 0.00 0.00 0.00 3.59
496 509 2.289072 GGGGGATATATGCGGATCGATG 60.289 54.545 0.54 0.00 0.00 3.84
556 580 1.919263 CATTGTGTTGTGTGTGTGTGC 59.081 47.619 0.00 0.00 0.00 4.57
594 618 2.616842 ACTTTGTAACGACAGGCCTTTG 59.383 45.455 0.00 0.00 36.76 2.77
605 629 2.027385 CAGGCCTTTGCTAATTCCTCC 58.973 52.381 0.00 0.00 37.74 4.30
654 680 2.357517 GTGAGGCCGTGACACAGG 60.358 66.667 16.20 9.02 35.06 4.00
677 703 7.807907 CAGGAGTAATAACGCATCAAAAGTTTT 59.192 33.333 0.00 0.00 0.00 2.43
678 704 8.357402 AGGAGTAATAACGCATCAAAAGTTTTT 58.643 29.630 0.00 0.00 0.00 1.94
740 767 1.519751 CTCGTGGCGCCTCTAGCTAT 61.520 60.000 29.70 0.00 40.39 2.97
741 768 1.372251 CGTGGCGCCTCTAGCTATG 60.372 63.158 29.70 6.76 40.39 2.23
742 769 1.666234 GTGGCGCCTCTAGCTATGC 60.666 63.158 29.70 0.00 40.39 3.14
743 770 1.834378 TGGCGCCTCTAGCTATGCT 60.834 57.895 29.70 0.00 43.41 3.79
744 771 1.369321 GGCGCCTCTAGCTATGCTT 59.631 57.895 22.15 0.00 40.44 3.91
802 833 4.662961 CAGTGCGGCGAGTCACCA 62.663 66.667 12.98 0.00 33.90 4.17
803 834 3.923864 AGTGCGGCGAGTCACCAA 61.924 61.111 12.98 0.00 33.90 3.67
804 835 3.414700 GTGCGGCGAGTCACCAAG 61.415 66.667 12.98 0.00 0.00 3.61
805 836 4.680237 TGCGGCGAGTCACCAAGG 62.680 66.667 12.98 0.00 0.00 3.61
806 837 4.373116 GCGGCGAGTCACCAAGGA 62.373 66.667 12.98 0.00 0.00 3.36
807 838 2.342279 CGGCGAGTCACCAAGGAA 59.658 61.111 0.00 0.00 0.00 3.36
879 910 1.581447 GGCCGCAGCTATAATTGCC 59.419 57.895 0.00 0.00 39.73 4.52
919 951 1.192534 GTTGCTTCGGTTCAGAGTTCG 59.807 52.381 0.00 0.00 0.00 3.95
1035 1094 2.606519 TCCTTGTGGACCCCTCCG 60.607 66.667 0.00 0.00 39.88 4.63
1381 3987 0.399091 GGTACCCACCTACCCTACCC 60.399 65.000 0.00 0.00 42.11 3.69
1393 3999 2.298661 CCTACCCACCGCCTCCTTT 61.299 63.158 0.00 0.00 0.00 3.11
1397 4003 4.778143 CCACCGCCTCCTTTCCCG 62.778 72.222 0.00 0.00 0.00 5.14
1398 4004 4.778143 CACCGCCTCCTTTCCCGG 62.778 72.222 0.00 0.00 45.80 5.73
1492 4109 0.610785 GCCCTCGTGGAATTGGGAAA 60.611 55.000 4.76 0.00 42.11 3.13
1516 4133 2.039879 GGGAAGGCTCTGGTTTAGTTCA 59.960 50.000 0.00 0.00 0.00 3.18
1519 4136 4.390264 GAAGGCTCTGGTTTAGTTCAGTT 58.610 43.478 0.00 0.00 33.13 3.16
1603 4220 2.736400 GCCCAATCATCCAGCGAAAAAG 60.736 50.000 0.00 0.00 0.00 2.27
1619 4492 6.828785 AGCGAAAAAGTATATCCCTGTTCAAT 59.171 34.615 0.00 0.00 0.00 2.57
1646 4519 0.458669 TTGGGAGGAATCGTCGCTAC 59.541 55.000 18.27 1.36 33.47 3.58
1923 4823 3.601443 TTTCCTCTCTAGTGAAGCTGC 57.399 47.619 0.00 0.00 0.00 5.25
1938 4838 1.986575 GCTGCCACGGAAGATTGAGC 61.987 60.000 0.00 0.00 0.00 4.26
2073 4974 1.198713 CAGAGCCACCTAGACCACAT 58.801 55.000 0.00 0.00 0.00 3.21
2074 4975 2.292257 ACAGAGCCACCTAGACCACATA 60.292 50.000 0.00 0.00 0.00 2.29
2075 4976 2.766263 CAGAGCCACCTAGACCACATAA 59.234 50.000 0.00 0.00 0.00 1.90
2076 4977 3.034635 AGAGCCACCTAGACCACATAAG 58.965 50.000 0.00 0.00 0.00 1.73
2077 4978 3.031736 GAGCCACCTAGACCACATAAGA 58.968 50.000 0.00 0.00 0.00 2.10
2078 4979 3.034635 AGCCACCTAGACCACATAAGAG 58.965 50.000 0.00 0.00 0.00 2.85
2079 4980 2.483889 GCCACCTAGACCACATAAGAGC 60.484 54.545 0.00 0.00 0.00 4.09
2080 4981 2.766263 CCACCTAGACCACATAAGAGCA 59.234 50.000 0.00 0.00 0.00 4.26
2081 4982 3.389329 CCACCTAGACCACATAAGAGCAT 59.611 47.826 0.00 0.00 0.00 3.79
2082 4983 4.502259 CCACCTAGACCACATAAGAGCATC 60.502 50.000 0.00 0.00 0.00 3.91
2093 4994 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
2094 4995 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
2095 4996 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
2096 4997 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
2097 4998 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
2098 4999 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
2099 5000 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
2100 5001 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
2101 5002 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
2123 5024 4.770102 CGTGCGCGCGGTAAACAG 62.770 66.667 34.14 10.77 0.00 3.16
2124 5025 3.408020 GTGCGCGCGGTAAACAGA 61.408 61.111 33.06 1.38 0.00 3.41
2125 5026 3.408020 TGCGCGCGGTAAACAGAC 61.408 61.111 33.06 11.79 0.00 3.51
2126 5027 4.143363 GCGCGCGGTAAACAGACC 62.143 66.667 33.06 6.44 36.00 3.85
2127 5028 3.484547 CGCGCGGTAAACAGACCC 61.485 66.667 24.84 0.00 35.95 4.46
2128 5029 2.047560 GCGCGGTAAACAGACCCT 60.048 61.111 8.83 0.00 35.95 4.34
2129 5030 1.670083 GCGCGGTAAACAGACCCTT 60.670 57.895 8.83 0.00 35.95 3.95
2130 5031 1.232621 GCGCGGTAAACAGACCCTTT 61.233 55.000 8.83 0.00 35.95 3.11
2131 5032 1.940752 GCGCGGTAAACAGACCCTTTA 60.941 52.381 8.83 0.00 35.95 1.85
2132 5033 1.997606 CGCGGTAAACAGACCCTTTAG 59.002 52.381 0.00 0.00 35.95 1.85
2133 5034 1.736126 GCGGTAAACAGACCCTTTAGC 59.264 52.381 0.00 0.00 35.95 3.09
2134 5035 1.997606 CGGTAAACAGACCCTTTAGCG 59.002 52.381 7.78 7.78 44.12 4.26
2135 5036 1.736126 GGTAAACAGACCCTTTAGCGC 59.264 52.381 0.00 0.00 32.88 5.92
2136 5037 1.392510 GTAAACAGACCCTTTAGCGCG 59.607 52.381 0.00 0.00 0.00 6.86
2137 5038 1.574702 AAACAGACCCTTTAGCGCGC 61.575 55.000 26.66 26.66 0.00 6.86
2138 5039 3.554692 CAGACCCTTTAGCGCGCG 61.555 66.667 28.44 28.44 0.00 6.86
2206 5107 1.557443 CTTCCGGCGCGCCTATAAAG 61.557 60.000 43.60 33.04 0.00 1.85
2215 5116 1.548973 CGCCTATAAAGTCCAGCGCG 61.549 60.000 0.00 0.00 36.89 6.86
2647 5548 1.085091 CGGCTACTACGCGGAGATAT 58.915 55.000 28.55 5.00 32.63 1.63
2798 5699 2.180017 GCAAGCGCTTGACCATGG 59.820 61.111 45.25 23.29 42.93 3.66
2835 5736 0.394938 ACACGGTACAAGACCATGCA 59.605 50.000 0.00 0.00 45.78 3.96
2970 5871 3.733960 CGTCGCGAGGAGGACACA 61.734 66.667 23.61 0.00 32.74 3.72
3059 5960 3.736996 TTGCAGCAGGTGGCCAGTT 62.737 57.895 5.11 0.00 46.50 3.16
3297 6213 8.774586 GCACCGATGTAAAATATCTTTGTATCT 58.225 33.333 0.00 0.00 0.00 1.98
3838 6772 6.551227 TCAGCTTGTGTGGATATGATAGTACT 59.449 38.462 0.00 0.00 0.00 2.73
3968 6903 5.356190 TGCATATGGAAAAAGAGAGCTTCAG 59.644 40.000 4.56 0.00 31.82 3.02
4230 7166 2.889678 TCATCTCATCGTCCTGATCCTG 59.110 50.000 0.00 0.00 34.13 3.86
4266 7202 1.098050 CTCCAATTGTAGTGCCAGGC 58.902 55.000 3.66 3.66 0.00 4.85
4291 7227 0.179089 CTTCTCGATCCCAGTGGCAG 60.179 60.000 2.61 0.00 0.00 4.85
4394 7331 2.095718 GGTTCTGAAACTTGGATCGTGC 60.096 50.000 0.00 0.00 35.61 5.34
4421 7358 2.906389 TGTAACTCTGGCCTGTCTGATT 59.094 45.455 3.32 0.00 0.00 2.57
4425 7362 2.289945 ACTCTGGCCTGTCTGATTGTTC 60.290 50.000 3.32 0.00 0.00 3.18
4485 7431 3.348119 TGGCATGCGTGTTTTTATCCTA 58.652 40.909 12.44 0.00 0.00 2.94
4693 7643 0.176680 CATAGACCTCGCAGCCAAGT 59.823 55.000 0.00 0.00 0.00 3.16
4706 7656 3.873952 GCAGCCAAGTCTAACATCTAAGG 59.126 47.826 0.00 0.00 0.00 2.69
4753 7703 2.349755 GTATGGGGCACACACCGT 59.650 61.111 0.00 0.00 0.00 4.83
4769 7719 2.496817 GTTCCGGAGCGCTCTCAT 59.503 61.111 34.46 0.35 41.13 2.90
4811 7761 4.211125 CCACTACTCCATCTTCAGAGCTA 58.789 47.826 0.00 0.00 33.18 3.32
4824 7778 5.765677 TCTTCAGAGCTATACTAACGCATCT 59.234 40.000 0.00 0.00 0.00 2.90
4894 7848 2.978010 CCACCCTGCACGTGAACC 60.978 66.667 22.23 1.56 32.77 3.62
5039 7996 2.283604 TAGCACCTGTCGGCCAGA 60.284 61.111 2.24 0.00 44.49 3.86
5055 8012 3.341823 GCCAGACATGACTTGACATCTT 58.658 45.455 0.00 0.00 0.00 2.40
5056 8013 3.755378 GCCAGACATGACTTGACATCTTT 59.245 43.478 0.00 0.00 0.00 2.52
5101 8058 1.381872 GCTCCACCTCCTGCCTCTA 60.382 63.158 0.00 0.00 0.00 2.43
5125 8082 1.102809 CCAGCACTGCTCCACAAACA 61.103 55.000 0.00 0.00 36.40 2.83
5131 8088 2.034124 ACTGCTCCACAAACAATGCTT 58.966 42.857 0.00 0.00 0.00 3.91
5146 8103 2.169832 TGCTTCCAAGAGAGAAACGG 57.830 50.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.586154 GATGAGCGGTTGGGTGGTTG 61.586 60.000 0.00 0.00 0.00 3.77
2 3 1.303317 GATGAGCGGTTGGGTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
3 4 1.852157 ATGATGAGCGGTTGGGTGGT 61.852 55.000 0.00 0.00 0.00 4.16
4 5 1.077501 ATGATGAGCGGTTGGGTGG 60.078 57.895 0.00 0.00 0.00 4.61
5 6 1.996786 GCATGATGAGCGGTTGGGTG 61.997 60.000 0.00 0.00 0.00 4.61
6 7 1.750399 GCATGATGAGCGGTTGGGT 60.750 57.895 0.00 0.00 0.00 4.51
7 8 3.113745 GCATGATGAGCGGTTGGG 58.886 61.111 0.00 0.00 0.00 4.12
14 15 1.333881 GCAATCAGACGCATGATGAGC 60.334 52.381 0.00 7.72 39.84 4.26
15 16 1.070776 CGCAATCAGACGCATGATGAG 60.071 52.381 0.00 0.00 39.84 2.90
16 17 0.932399 CGCAATCAGACGCATGATGA 59.068 50.000 0.00 0.00 39.84 2.92
17 18 0.654160 ACGCAATCAGACGCATGATG 59.346 50.000 0.00 0.00 39.84 3.07
18 19 1.063027 CAACGCAATCAGACGCATGAT 59.937 47.619 0.00 0.00 41.72 2.45
19 20 0.443478 CAACGCAATCAGACGCATGA 59.557 50.000 0.00 0.00 0.00 3.07
20 21 1.129879 GCAACGCAATCAGACGCATG 61.130 55.000 0.00 0.00 0.00 4.06
21 22 1.135315 GCAACGCAATCAGACGCAT 59.865 52.632 0.00 0.00 0.00 4.73
22 23 2.555782 GCAACGCAATCAGACGCA 59.444 55.556 0.00 0.00 0.00 5.24
23 24 2.571611 CGCAACGCAATCAGACGC 60.572 61.111 0.00 0.00 0.00 5.19
24 25 1.225475 GACGCAACGCAATCAGACG 60.225 57.895 0.00 0.00 0.00 4.18
25 26 1.225475 CGACGCAACGCAATCAGAC 60.225 57.895 0.00 0.00 0.00 3.51
26 27 1.372375 TCGACGCAACGCAATCAGA 60.372 52.632 0.00 0.00 0.00 3.27
27 28 1.225475 GTCGACGCAACGCAATCAG 60.225 57.895 0.00 0.00 0.00 2.90
28 29 1.885814 CTGTCGACGCAACGCAATCA 61.886 55.000 11.62 0.00 0.00 2.57
29 30 1.225475 CTGTCGACGCAACGCAATC 60.225 57.895 11.62 0.00 0.00 2.67
30 31 1.218875 TTCTGTCGACGCAACGCAAT 61.219 50.000 11.62 0.00 0.00 3.56
31 32 1.422179 TTTCTGTCGACGCAACGCAA 61.422 50.000 11.62 0.00 0.00 4.85
84 85 4.378046 GGTGCGTTCGTTGAGTAATTTGAT 60.378 41.667 0.00 0.00 0.00 2.57
110 111 1.084370 CAGGTTCCGATCGACAAGCC 61.084 60.000 18.66 12.71 0.00 4.35
117 118 1.369091 CCAAAGGCAGGTTCCGATCG 61.369 60.000 8.51 8.51 0.00 3.69
233 246 1.672356 CAACAAGACGGGGCTGAGG 60.672 63.158 0.00 0.00 0.00 3.86
253 266 2.231235 GGTGACATGGTTTCATTCACCC 59.769 50.000 15.23 2.20 44.50 4.61
312 325 1.502163 CCGCCGGCTCATCAAGAATC 61.502 60.000 26.68 0.00 0.00 2.52
321 334 2.292794 GACTTATGACCGCCGGCTCA 62.293 60.000 26.68 22.73 0.00 4.26
325 338 2.960129 GCGACTTATGACCGCCGG 60.960 66.667 0.00 0.00 42.77 6.13
333 346 2.672961 TCAAGAGGTGGCGACTTATG 57.327 50.000 0.00 0.00 0.00 1.90
334 347 3.034635 AGATCAAGAGGTGGCGACTTAT 58.965 45.455 0.00 0.00 0.00 1.73
335 348 2.457598 AGATCAAGAGGTGGCGACTTA 58.542 47.619 0.00 0.00 0.00 2.24
336 349 1.270907 AGATCAAGAGGTGGCGACTT 58.729 50.000 0.00 0.00 0.00 3.01
337 350 1.270907 AAGATCAAGAGGTGGCGACT 58.729 50.000 0.00 0.00 0.00 4.18
338 351 2.961526 TAAGATCAAGAGGTGGCGAC 57.038 50.000 0.00 0.00 0.00 5.19
339 352 3.300388 AGATAAGATCAAGAGGTGGCGA 58.700 45.455 0.00 0.00 0.00 5.54
340 353 3.742433 AGATAAGATCAAGAGGTGGCG 57.258 47.619 0.00 0.00 0.00 5.69
341 354 4.994217 GCTAAGATAAGATCAAGAGGTGGC 59.006 45.833 0.00 0.00 0.00 5.01
342 355 6.166984 TGCTAAGATAAGATCAAGAGGTGG 57.833 41.667 0.00 0.00 0.00 4.61
343 356 7.984050 TCTTTGCTAAGATAAGATCAAGAGGTG 59.016 37.037 6.50 0.00 35.49 4.00
344 357 8.083828 TCTTTGCTAAGATAAGATCAAGAGGT 57.916 34.615 6.50 0.00 35.49 3.85
345 358 8.954950 TTCTTTGCTAAGATAAGATCAAGAGG 57.045 34.615 11.41 0.00 40.01 3.69
356 369 9.770097 CCATACTTCTCATTCTTTGCTAAGATA 57.230 33.333 11.41 3.79 40.01 1.98
357 370 7.228308 GCCATACTTCTCATTCTTTGCTAAGAT 59.772 37.037 11.41 0.02 40.01 2.40
359 372 6.541641 AGCCATACTTCTCATTCTTTGCTAAG 59.458 38.462 1.04 1.04 0.00 2.18
360 373 6.418101 AGCCATACTTCTCATTCTTTGCTAA 58.582 36.000 0.00 0.00 0.00 3.09
361 374 5.994250 AGCCATACTTCTCATTCTTTGCTA 58.006 37.500 0.00 0.00 0.00 3.49
362 375 4.853007 AGCCATACTTCTCATTCTTTGCT 58.147 39.130 0.00 0.00 0.00 3.91
363 376 5.338365 CAAGCCATACTTCTCATTCTTTGC 58.662 41.667 0.00 0.00 36.04 3.68
364 377 5.678107 GCCAAGCCATACTTCTCATTCTTTG 60.678 44.000 0.00 0.00 36.04 2.77
365 378 4.400567 GCCAAGCCATACTTCTCATTCTTT 59.599 41.667 0.00 0.00 36.04 2.52
366 379 3.950395 GCCAAGCCATACTTCTCATTCTT 59.050 43.478 0.00 0.00 36.04 2.52
367 380 3.201708 AGCCAAGCCATACTTCTCATTCT 59.798 43.478 0.00 0.00 36.04 2.40
368 381 3.549794 AGCCAAGCCATACTTCTCATTC 58.450 45.455 0.00 0.00 36.04 2.67
369 382 3.659183 AGCCAAGCCATACTTCTCATT 57.341 42.857 0.00 0.00 36.04 2.57
370 383 3.072184 CCTAGCCAAGCCATACTTCTCAT 59.928 47.826 0.00 0.00 36.04 2.90
371 384 2.435805 CCTAGCCAAGCCATACTTCTCA 59.564 50.000 0.00 0.00 36.04 3.27
372 385 2.224402 CCCTAGCCAAGCCATACTTCTC 60.224 54.545 0.00 0.00 36.04 2.87
373 386 1.771255 CCCTAGCCAAGCCATACTTCT 59.229 52.381 0.00 0.00 36.04 2.85
374 387 1.768870 TCCCTAGCCAAGCCATACTTC 59.231 52.381 0.00 0.00 36.04 3.01
375 388 1.893315 TCCCTAGCCAAGCCATACTT 58.107 50.000 0.00 0.00 40.05 2.24
376 389 1.771255 CTTCCCTAGCCAAGCCATACT 59.229 52.381 0.00 0.00 0.00 2.12
377 390 1.815795 GCTTCCCTAGCCAAGCCATAC 60.816 57.143 11.19 0.00 44.48 2.39
378 391 0.474184 GCTTCCCTAGCCAAGCCATA 59.526 55.000 11.19 0.00 44.48 2.74
379 392 1.228510 GCTTCCCTAGCCAAGCCAT 59.771 57.895 11.19 0.00 44.48 4.40
380 393 2.677228 GCTTCCCTAGCCAAGCCA 59.323 61.111 11.19 0.00 44.48 4.75
388 401 2.362717 GCCACTACTACTGCTTCCCTAG 59.637 54.545 0.00 0.00 0.00 3.02
389 402 2.291996 TGCCACTACTACTGCTTCCCTA 60.292 50.000 0.00 0.00 0.00 3.53
390 403 1.196012 GCCACTACTACTGCTTCCCT 58.804 55.000 0.00 0.00 0.00 4.20
391 404 0.902531 TGCCACTACTACTGCTTCCC 59.097 55.000 0.00 0.00 0.00 3.97
392 405 1.550976 ACTGCCACTACTACTGCTTCC 59.449 52.381 0.00 0.00 0.00 3.46
393 406 3.320673 AACTGCCACTACTACTGCTTC 57.679 47.619 0.00 0.00 0.00 3.86
394 407 3.833070 ACTAACTGCCACTACTACTGCTT 59.167 43.478 0.00 0.00 0.00 3.91
395 408 3.193691 CACTAACTGCCACTACTACTGCT 59.806 47.826 0.00 0.00 0.00 4.24
396 409 3.056749 ACACTAACTGCCACTACTACTGC 60.057 47.826 0.00 0.00 0.00 4.40
397 410 4.217767 TCACACTAACTGCCACTACTACTG 59.782 45.833 0.00 0.00 0.00 2.74
398 411 4.404640 TCACACTAACTGCCACTACTACT 58.595 43.478 0.00 0.00 0.00 2.57
399 412 4.778534 TCACACTAACTGCCACTACTAC 57.221 45.455 0.00 0.00 0.00 2.73
400 413 5.995565 AATCACACTAACTGCCACTACTA 57.004 39.130 0.00 0.00 0.00 1.82
401 414 4.891992 AATCACACTAACTGCCACTACT 57.108 40.909 0.00 0.00 0.00 2.57
402 415 5.701290 AGAAAATCACACTAACTGCCACTAC 59.299 40.000 0.00 0.00 0.00 2.73
403 416 5.700832 CAGAAAATCACACTAACTGCCACTA 59.299 40.000 0.00 0.00 0.00 2.74
404 417 4.516698 CAGAAAATCACACTAACTGCCACT 59.483 41.667 0.00 0.00 0.00 4.00
405 418 4.320494 CCAGAAAATCACACTAACTGCCAC 60.320 45.833 0.00 0.00 0.00 5.01
406 419 3.820467 CCAGAAAATCACACTAACTGCCA 59.180 43.478 0.00 0.00 0.00 4.92
407 420 4.072131 TCCAGAAAATCACACTAACTGCC 58.928 43.478 0.00 0.00 0.00 4.85
408 421 4.997395 TCTCCAGAAAATCACACTAACTGC 59.003 41.667 0.00 0.00 0.00 4.40
409 422 6.708054 AGTTCTCCAGAAAATCACACTAACTG 59.292 38.462 0.00 0.00 35.58 3.16
410 423 6.831976 AGTTCTCCAGAAAATCACACTAACT 58.168 36.000 0.00 0.00 35.58 2.24
411 424 7.497925 AAGTTCTCCAGAAAATCACACTAAC 57.502 36.000 0.00 0.00 35.58 2.34
412 425 8.519799 AAAAGTTCTCCAGAAAATCACACTAA 57.480 30.769 0.00 0.00 35.58 2.24
413 426 7.993183 AGAAAAGTTCTCCAGAAAATCACACTA 59.007 33.333 0.00 0.00 34.07 2.74
414 427 6.830838 AGAAAAGTTCTCCAGAAAATCACACT 59.169 34.615 0.00 0.00 34.07 3.55
415 428 6.914757 CAGAAAAGTTCTCCAGAAAATCACAC 59.085 38.462 0.00 0.00 38.11 3.82
416 429 6.039717 CCAGAAAAGTTCTCCAGAAAATCACA 59.960 38.462 0.00 0.00 38.11 3.58
417 430 6.442112 CCAGAAAAGTTCTCCAGAAAATCAC 58.558 40.000 0.00 0.00 38.11 3.06
418 431 5.010012 GCCAGAAAAGTTCTCCAGAAAATCA 59.990 40.000 0.00 0.00 38.11 2.57
419 432 5.242615 AGCCAGAAAAGTTCTCCAGAAAATC 59.757 40.000 0.00 0.00 38.11 2.17
420 433 5.143369 AGCCAGAAAAGTTCTCCAGAAAAT 58.857 37.500 0.00 0.00 38.11 1.82
421 434 4.536765 AGCCAGAAAAGTTCTCCAGAAAA 58.463 39.130 0.00 0.00 38.11 2.29
422 435 4.170468 AGCCAGAAAAGTTCTCCAGAAA 57.830 40.909 0.00 0.00 38.11 2.52
423 436 3.864789 AGCCAGAAAAGTTCTCCAGAA 57.135 42.857 0.00 0.00 38.11 3.02
424 437 3.864789 AAGCCAGAAAAGTTCTCCAGA 57.135 42.857 0.00 0.00 38.11 3.86
425 438 3.551659 GCAAAGCCAGAAAAGTTCTCCAG 60.552 47.826 0.00 0.00 38.11 3.86
426 439 2.362077 GCAAAGCCAGAAAAGTTCTCCA 59.638 45.455 0.00 0.00 38.11 3.86
427 440 3.018598 GCAAAGCCAGAAAAGTTCTCC 57.981 47.619 0.00 0.00 38.11 3.71
441 454 2.497138 AGCAAGGAAAAATGGCAAAGC 58.503 42.857 0.00 0.00 0.00 3.51
442 455 4.261280 CCAAAGCAAGGAAAAATGGCAAAG 60.261 41.667 0.00 0.00 0.00 2.77
443 456 3.631227 CCAAAGCAAGGAAAAATGGCAAA 59.369 39.130 0.00 0.00 0.00 3.68
444 457 3.118112 TCCAAAGCAAGGAAAAATGGCAA 60.118 39.130 0.00 0.00 30.71 4.52
445 458 2.437281 TCCAAAGCAAGGAAAAATGGCA 59.563 40.909 0.00 0.00 30.71 4.92
446 459 3.069289 CTCCAAAGCAAGGAAAAATGGC 58.931 45.455 0.00 0.00 34.08 4.40
447 460 4.563061 CTCTCCAAAGCAAGGAAAAATGG 58.437 43.478 0.00 0.00 34.08 3.16
448 461 3.992427 GCTCTCCAAAGCAAGGAAAAATG 59.008 43.478 0.00 0.00 42.05 2.32
449 462 3.899980 AGCTCTCCAAAGCAAGGAAAAAT 59.100 39.130 0.00 0.00 45.00 1.82
450 463 3.299503 AGCTCTCCAAAGCAAGGAAAAA 58.700 40.909 0.00 0.00 45.00 1.94
451 464 2.949447 AGCTCTCCAAAGCAAGGAAAA 58.051 42.857 0.00 0.00 45.00 2.29
452 465 2.664402 AGCTCTCCAAAGCAAGGAAA 57.336 45.000 0.00 0.00 45.00 3.13
453 466 3.788227 TTAGCTCTCCAAAGCAAGGAA 57.212 42.857 0.00 0.00 45.00 3.36
454 467 3.560025 CCTTTAGCTCTCCAAAGCAAGGA 60.560 47.826 8.54 0.00 43.28 3.36
455 468 2.751806 CCTTTAGCTCTCCAAAGCAAGG 59.248 50.000 0.00 0.31 45.00 3.61
456 469 2.751806 CCCTTTAGCTCTCCAAAGCAAG 59.248 50.000 0.00 0.00 45.00 4.01
457 470 2.555227 CCCCTTTAGCTCTCCAAAGCAA 60.555 50.000 0.00 0.00 45.00 3.91
458 471 1.004745 CCCCTTTAGCTCTCCAAAGCA 59.995 52.381 0.00 0.00 45.00 3.91
459 472 1.683319 CCCCCTTTAGCTCTCCAAAGC 60.683 57.143 0.00 0.00 42.82 3.51
460 473 1.916181 TCCCCCTTTAGCTCTCCAAAG 59.084 52.381 0.00 0.00 0.00 2.77
461 474 2.053747 TCCCCCTTTAGCTCTCCAAA 57.946 50.000 0.00 0.00 0.00 3.28
462 475 2.286935 ATCCCCCTTTAGCTCTCCAA 57.713 50.000 0.00 0.00 0.00 3.53
463 476 3.655972 ATATCCCCCTTTAGCTCTCCA 57.344 47.619 0.00 0.00 0.00 3.86
464 477 4.141597 GCATATATCCCCCTTTAGCTCTCC 60.142 50.000 0.00 0.00 0.00 3.71
465 478 4.442192 CGCATATATCCCCCTTTAGCTCTC 60.442 50.000 0.00 0.00 0.00 3.20
466 479 3.452627 CGCATATATCCCCCTTTAGCTCT 59.547 47.826 0.00 0.00 0.00 4.09
467 480 3.432326 CCGCATATATCCCCCTTTAGCTC 60.432 52.174 0.00 0.00 0.00 4.09
468 481 2.505819 CCGCATATATCCCCCTTTAGCT 59.494 50.000 0.00 0.00 0.00 3.32
469 482 2.504175 TCCGCATATATCCCCCTTTAGC 59.496 50.000 0.00 0.00 0.00 3.09
470 483 4.501571 CGATCCGCATATATCCCCCTTTAG 60.502 50.000 0.00 0.00 0.00 1.85
471 484 3.386726 CGATCCGCATATATCCCCCTTTA 59.613 47.826 0.00 0.00 0.00 1.85
472 485 2.170607 CGATCCGCATATATCCCCCTTT 59.829 50.000 0.00 0.00 0.00 3.11
473 486 1.762957 CGATCCGCATATATCCCCCTT 59.237 52.381 0.00 0.00 0.00 3.95
474 487 1.063190 TCGATCCGCATATATCCCCCT 60.063 52.381 0.00 0.00 0.00 4.79
475 488 1.410004 TCGATCCGCATATATCCCCC 58.590 55.000 0.00 0.00 0.00 5.40
476 489 2.628178 TCATCGATCCGCATATATCCCC 59.372 50.000 0.00 0.00 0.00 4.81
477 490 3.570125 TCTCATCGATCCGCATATATCCC 59.430 47.826 0.00 0.00 0.00 3.85
478 491 4.837896 TCTCATCGATCCGCATATATCC 57.162 45.455 0.00 0.00 0.00 2.59
487 500 2.586258 ACCTTGTTCTCATCGATCCG 57.414 50.000 0.00 0.00 0.00 4.18
556 580 2.961526 AGTAAGCTGGGATACACACG 57.038 50.000 0.00 0.00 39.74 4.49
594 618 5.287226 CAATGCATTCTTGGAGGAATTAGC 58.713 41.667 9.53 0.00 34.15 3.09
621 647 1.067084 CACGGGTGTTTGCAATGCA 59.933 52.632 2.72 2.72 36.47 3.96
622 648 0.664166 CTCACGGGTGTTTGCAATGC 60.664 55.000 0.00 0.00 0.00 3.56
623 649 0.039256 CCTCACGGGTGTTTGCAATG 60.039 55.000 0.00 0.00 0.00 2.82
624 650 1.805428 GCCTCACGGGTGTTTGCAAT 61.805 55.000 0.00 0.00 37.43 3.56
625 651 2.485795 GCCTCACGGGTGTTTGCAA 61.486 57.895 0.00 0.00 37.43 4.08
626 652 2.904866 GCCTCACGGGTGTTTGCA 60.905 61.111 0.00 0.00 37.43 4.08
627 653 3.670377 GGCCTCACGGGTGTTTGC 61.670 66.667 0.00 0.88 37.43 3.68
628 654 3.353836 CGGCCTCACGGGTGTTTG 61.354 66.667 0.00 0.00 37.43 2.93
629 655 3.868985 ACGGCCTCACGGGTGTTT 61.869 61.111 0.00 0.00 38.39 2.83
630 656 4.619227 CACGGCCTCACGGGTGTT 62.619 66.667 0.00 0.00 38.39 3.32
677 703 6.402222 TGCCACTGCTTCTTTTTAAGAAAAA 58.598 32.000 3.73 0.00 46.13 1.94
678 704 5.971763 TGCCACTGCTTCTTTTTAAGAAAA 58.028 33.333 3.73 0.00 46.13 2.29
679 705 5.590530 TGCCACTGCTTCTTTTTAAGAAA 57.409 34.783 3.73 0.00 46.13 2.52
680 706 5.590530 TTGCCACTGCTTCTTTTTAAGAA 57.409 34.783 2.27 2.27 44.47 2.52
681 707 5.348164 GTTTGCCACTGCTTCTTTTTAAGA 58.652 37.500 0.00 0.00 38.71 2.10
682 708 4.207019 CGTTTGCCACTGCTTCTTTTTAAG 59.793 41.667 0.00 0.00 38.71 1.85
683 709 4.109050 CGTTTGCCACTGCTTCTTTTTAA 58.891 39.130 0.00 0.00 38.71 1.52
684 710 3.701241 CGTTTGCCACTGCTTCTTTTTA 58.299 40.909 0.00 0.00 38.71 1.52
690 716 0.730494 GATGCGTTTGCCACTGCTTC 60.730 55.000 0.00 0.00 41.78 3.86
740 767 3.027412 CTCTACCTCCTAGAGCAAAGCA 58.973 50.000 0.00 0.00 41.73 3.91
741 768 3.726291 CTCTACCTCCTAGAGCAAAGC 57.274 52.381 0.00 0.00 41.73 3.51
802 833 2.491640 CCAGGCTTCCTTCCTTTTCCTT 60.492 50.000 0.00 0.00 0.00 3.36
803 834 1.076187 CCAGGCTTCCTTCCTTTTCCT 59.924 52.381 0.00 0.00 0.00 3.36
804 835 1.075536 TCCAGGCTTCCTTCCTTTTCC 59.924 52.381 0.00 0.00 0.00 3.13
805 836 2.163509 GTCCAGGCTTCCTTCCTTTTC 58.836 52.381 0.00 0.00 0.00 2.29
806 837 1.499007 TGTCCAGGCTTCCTTCCTTTT 59.501 47.619 0.00 0.00 0.00 2.27
807 838 1.074566 CTGTCCAGGCTTCCTTCCTTT 59.925 52.381 0.00 0.00 0.00 3.11
879 910 4.548513 CGAGGGGAGGGAGGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
919 951 1.002502 GGTGGGGGTACTGCTGAAC 60.003 63.158 0.00 0.00 0.00 3.18
957 1004 2.735857 TCTGTCTCGTCGTCGCGA 60.736 61.111 3.71 3.71 39.22 5.87
1381 3987 4.778143 CCGGGAAAGGAGGCGGTG 62.778 72.222 0.00 0.00 0.00 4.94
1393 3999 2.291043 GGAGCAAGAGGAACCGGGA 61.291 63.158 6.32 0.00 0.00 5.14
1397 4003 0.037447 AAGCAGGAGCAAGAGGAACC 59.963 55.000 0.00 0.00 45.49 3.62
1398 4004 1.163554 CAAGCAGGAGCAAGAGGAAC 58.836 55.000 0.00 0.00 45.49 3.62
1492 4109 0.178843 TAAACCAGAGCCTTCCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
1519 4136 1.210967 ACCTGTTTTGTCCAAGACGGA 59.789 47.619 10.23 0.00 43.61 4.69
1619 4492 5.294356 CGACGATTCCTCCCAAATATACAA 58.706 41.667 0.00 0.00 0.00 2.41
1646 4519 3.871594 CCAAATCTACCGGAGTTAAGCAG 59.128 47.826 9.46 0.00 30.62 4.24
1923 4823 2.691409 TTAGGCTCAATCTTCCGTGG 57.309 50.000 0.00 0.00 0.00 4.94
1938 4838 8.622948 AAGTTCTAAAGTCACCTCAAATTAGG 57.377 34.615 0.00 0.00 42.82 2.69
2073 4974 1.134699 CGGCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
2074 4975 0.392193 CGGCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
2075 4976 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2076 4977 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
2077 4978 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
2078 4979 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
2079 4980 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
2080 4981 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
2081 4982 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
2082 4983 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
2083 4984 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
2084 4985 2.175811 GTTTAGCGCGGCTGTTGG 59.824 61.111 8.83 0.00 40.10 3.77
2085 4986 2.202171 CGTTTAGCGCGGCTGTTG 60.202 61.111 8.83 0.00 40.10 3.33
2086 4987 3.419759 CCGTTTAGCGCGGCTGTT 61.420 61.111 8.83 0.00 42.82 3.16
2106 5007 4.770102 CTGTTTACCGCGCGCACG 62.770 66.667 32.61 22.41 44.07 5.34
2107 5008 3.408020 TCTGTTTACCGCGCGCAC 61.408 61.111 32.61 21.33 0.00 5.34
2108 5009 3.408020 GTCTGTTTACCGCGCGCA 61.408 61.111 32.61 15.86 0.00 6.09
2109 5010 4.143363 GGTCTGTTTACCGCGCGC 62.143 66.667 27.36 23.91 0.00 6.86
2110 5011 3.484547 GGGTCTGTTTACCGCGCG 61.485 66.667 25.67 25.67 40.73 6.86
2111 5012 1.232621 AAAGGGTCTGTTTACCGCGC 61.233 55.000 0.00 0.00 40.73 6.86
2112 5013 1.997606 CTAAAGGGTCTGTTTACCGCG 59.002 52.381 0.00 0.00 40.73 6.46
2113 5014 1.736126 GCTAAAGGGTCTGTTTACCGC 59.264 52.381 0.00 0.00 40.73 5.68
2114 5015 1.997606 CGCTAAAGGGTCTGTTTACCG 59.002 52.381 0.00 0.00 40.73 4.02
2115 5016 1.736126 GCGCTAAAGGGTCTGTTTACC 59.264 52.381 0.00 0.00 38.94 2.85
2116 5017 1.392510 CGCGCTAAAGGGTCTGTTTAC 59.607 52.381 5.56 0.00 0.00 2.01
2117 5018 1.717194 CGCGCTAAAGGGTCTGTTTA 58.283 50.000 5.56 0.00 0.00 2.01
2118 5019 1.574702 GCGCGCTAAAGGGTCTGTTT 61.575 55.000 26.67 0.00 0.00 2.83
2119 5020 2.033194 GCGCGCTAAAGGGTCTGTT 61.033 57.895 26.67 0.00 0.00 3.16
2120 5021 2.434359 GCGCGCTAAAGGGTCTGT 60.434 61.111 26.67 0.00 0.00 3.41
2121 5022 3.554692 CGCGCGCTAAAGGGTCTG 61.555 66.667 30.48 5.07 0.00 3.51
2198 5099 1.548973 CGCGCGCTGGACTTTATAGG 61.549 60.000 30.48 4.24 0.00 2.57
2224 5125 3.844090 GAGGAGGCGTGGAGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
3059 5960 0.319211 ATCGTTCGCCGTGAAGAACA 60.319 50.000 8.70 0.00 44.94 3.18
3333 6249 1.017177 TTCTACATCGGTGCAACGGC 61.017 55.000 26.21 0.00 38.12 5.68
3334 6250 1.327460 CATTCTACATCGGTGCAACGG 59.673 52.381 26.21 11.99 38.12 4.44
3335 6251 2.267426 TCATTCTACATCGGTGCAACG 58.733 47.619 20.47 20.47 38.12 4.10
3336 6252 2.030946 GCTCATTCTACATCGGTGCAAC 59.969 50.000 0.00 0.00 0.00 4.17
3337 6253 2.279741 GCTCATTCTACATCGGTGCAA 58.720 47.619 0.00 0.00 0.00 4.08
3338 6254 1.802508 CGCTCATTCTACATCGGTGCA 60.803 52.381 0.00 0.00 0.00 4.57
3339 6255 0.855349 CGCTCATTCTACATCGGTGC 59.145 55.000 0.00 0.00 0.00 5.01
3340 6256 0.855349 GCGCTCATTCTACATCGGTG 59.145 55.000 0.00 0.00 0.00 4.94
3341 6257 0.595053 CGCGCTCATTCTACATCGGT 60.595 55.000 5.56 0.00 0.00 4.69
3342 6258 1.880601 GCGCGCTCATTCTACATCGG 61.881 60.000 26.67 0.00 0.00 4.18
3343 6259 1.484659 GCGCGCTCATTCTACATCG 59.515 57.895 26.67 0.00 0.00 3.84
3344 6260 1.484659 CGCGCGCTCATTCTACATC 59.515 57.895 30.48 0.00 0.00 3.06
3345 6261 2.589492 GCGCGCGCTCATTCTACAT 61.589 57.895 44.38 0.00 38.26 2.29
3494 6416 3.335356 ATCTCCAACAGGCGCCCAG 62.335 63.158 26.15 19.53 0.00 4.45
3617 6539 3.096092 TCAAAGTGTTATGGGAATGGCC 58.904 45.455 0.00 0.00 0.00 5.36
3873 6807 9.493206 TGTTTTCGTAATTTCACAACTAAACTC 57.507 29.630 0.00 0.00 0.00 3.01
4129 7065 2.125673 CCGCCCTTCACCAGTACG 60.126 66.667 0.00 0.00 0.00 3.67
4230 7166 3.352648 TGGAGTGCAGGTTAATTAAGCC 58.647 45.455 20.83 13.99 34.40 4.35
4266 7202 2.098934 CACTGGGATCGAGAAGACAGAG 59.901 54.545 10.89 1.91 0.00 3.35
4291 7227 1.537172 GGAAACCATAGGAGCCCCC 59.463 63.158 0.00 0.00 0.00 5.40
4394 7331 3.149196 ACAGGCCAGAGTTACACATTTG 58.851 45.455 5.01 0.00 0.00 2.32
4421 7358 1.686587 TGCCGAAGAAGACAGAGAACA 59.313 47.619 0.00 0.00 0.00 3.18
4425 7362 2.964740 TGATTGCCGAAGAAGACAGAG 58.035 47.619 0.00 0.00 0.00 3.35
4693 7643 2.700897 GCCTCAGGCCTTAGATGTTAGA 59.299 50.000 15.91 0.00 44.06 2.10
4753 7703 1.456196 CCTATGAGAGCGCTCCGGAA 61.456 60.000 32.94 16.75 40.55 4.30
4759 7709 4.292178 GCGGCCTATGAGAGCGCT 62.292 66.667 11.27 11.27 0.00 5.92
4811 7761 3.467803 GGCAAGGAAGATGCGTTAGTAT 58.532 45.455 0.00 0.00 44.75 2.12
4824 7778 0.323629 CAGTTAGACCGGGCAAGGAA 59.676 55.000 11.69 0.00 34.73 3.36
4918 7874 0.036010 GCATGGTGCTGAGGTGTACT 60.036 55.000 0.00 0.00 40.96 2.73
4967 7924 5.865013 CGCACGATAGATCTTCTAGAGACTA 59.135 44.000 0.00 0.00 36.95 2.59
4975 7932 2.879026 TGCTACGCACGATAGATCTTCT 59.121 45.455 0.00 0.00 41.38 2.85
5003 7960 0.823356 ACGCTTTGTCATGCCTGGTT 60.823 50.000 0.00 0.00 0.00 3.67
5039 7996 5.147330 TCGGTAAAGATGTCAAGTCATGT 57.853 39.130 0.00 0.00 0.00 3.21
5055 8012 0.669318 CTTGCACGGAGCTTCGGTAA 60.669 55.000 20.69 12.17 45.94 2.85
5056 8013 1.080093 CTTGCACGGAGCTTCGGTA 60.080 57.895 20.69 4.38 45.94 4.02
5101 8058 2.113986 GGAGCAGTGCTGGTGGTT 59.886 61.111 25.35 0.00 39.88 3.67
5125 8082 3.077359 CCGTTTCTCTCTTGGAAGCATT 58.923 45.455 0.00 0.00 0.00 3.56
5131 8088 1.048601 AGTGCCGTTTCTCTCTTGGA 58.951 50.000 0.00 0.00 0.00 3.53
5159 8116 1.032794 CTTCCAGATCGGACGATGGA 58.967 55.000 12.40 12.04 46.36 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.