Multiple sequence alignment - TraesCS5A01G447300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G447300 chr5A 100.000 2782 0 0 1 2782 626988260 626991041 0.000000e+00 5138.0
1 TraesCS5A01G447300 chr5A 100.000 1863 0 0 3156 5018 626991415 626993277 0.000000e+00 3441.0
2 TraesCS5A01G447300 chr5B 93.076 1502 80 18 3522 5018 622040013 622041495 0.000000e+00 2176.0
3 TraesCS5A01G447300 chr5B 84.544 1734 147 57 867 2527 622037509 622039194 0.000000e+00 1605.0
4 TraesCS5A01G447300 chr5B 82.927 410 28 17 1089 1495 89692532 89692902 1.040000e-86 331.0
5 TraesCS5A01G447300 chr5B 92.697 178 11 2 2535 2712 622039366 622039541 6.450000e-64 255.0
6 TraesCS5A01G447300 chr5D 84.611 1709 150 55 1055 2712 500489139 500490785 0.000000e+00 1594.0
7 TraesCS5A01G447300 chr5D 92.503 867 49 11 3522 4374 500491272 500492136 0.000000e+00 1227.0
8 TraesCS5A01G447300 chr5D 89.661 590 51 6 173 761 500488135 500488715 0.000000e+00 743.0
9 TraesCS5A01G447300 chr5D 93.483 491 28 3 4528 5018 500492193 500492679 0.000000e+00 726.0
10 TraesCS5A01G447300 chr5D 81.848 617 106 6 173 786 487270132 487270745 9.630000e-142 514.0
11 TraesCS5A01G447300 chr5D 78.920 389 54 19 1380 1754 26288574 26288200 6.490000e-59 239.0
12 TraesCS5A01G447300 chr5D 100.000 32 0 0 1 32 500488091 500488122 5.430000e-05 60.2
13 TraesCS5A01G447300 chr7D 83.577 615 89 9 174 785 269706700 269707305 2.620000e-157 566.0
14 TraesCS5A01G447300 chr7D 81.729 613 109 3 172 783 461202108 461201498 4.480000e-140 508.0
15 TraesCS5A01G447300 chr7D 84.083 578 39 28 1091 1644 635931396 635930848 4.480000e-140 508.0
16 TraesCS5A01G447300 chr7D 87.081 418 44 7 1682 2091 635930853 635930438 9.840000e-127 464.0
17 TraesCS5A01G447300 chr2D 82.843 612 98 7 173 783 429082278 429081673 4.420000e-150 542.0
18 TraesCS5A01G447300 chr2D 82.488 611 99 8 162 768 604075045 604074439 3.440000e-146 529.0
19 TraesCS5A01G447300 chr6D 82.714 619 95 11 173 785 13062163 13062775 1.590000e-149 540.0
20 TraesCS5A01G447300 chr7A 82.212 624 99 10 163 782 30868702 30869317 1.240000e-145 527.0
21 TraesCS5A01G447300 chr7A 81.717 629 100 10 163 789 30870389 30871004 1.250000e-140 510.0
22 TraesCS5A01G447300 chr1B 83.993 581 41 27 1089 1644 578101533 578102086 1.250000e-140 510.0
23 TraesCS5A01G447300 chr2A 87.530 417 43 7 1682 2091 441108582 441108996 1.630000e-129 473.0
24 TraesCS5A01G447300 chr2A 82.902 579 39 26 1089 1644 441108046 441108587 2.740000e-127 466.0
25 TraesCS5A01G447300 chr4A 81.520 579 46 30 1089 1644 281594511 281593971 2.160000e-113 420.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G447300 chr5A 626988260 626993277 5017 False 4289.500000 5138 100.000000 1 5018 2 chr5A.!!$F1 5017
1 TraesCS5A01G447300 chr5B 622037509 622041495 3986 False 1345.333333 2176 90.105667 867 5018 3 chr5B.!!$F2 4151
2 TraesCS5A01G447300 chr5D 500488091 500492679 4588 False 870.040000 1594 92.051600 1 5018 5 chr5D.!!$F2 5017
3 TraesCS5A01G447300 chr5D 487270132 487270745 613 False 514.000000 514 81.848000 173 786 1 chr5D.!!$F1 613
4 TraesCS5A01G447300 chr7D 269706700 269707305 605 False 566.000000 566 83.577000 174 785 1 chr7D.!!$F1 611
5 TraesCS5A01G447300 chr7D 461201498 461202108 610 True 508.000000 508 81.729000 172 783 1 chr7D.!!$R1 611
6 TraesCS5A01G447300 chr7D 635930438 635931396 958 True 486.000000 508 85.582000 1091 2091 2 chr7D.!!$R2 1000
7 TraesCS5A01G447300 chr2D 429081673 429082278 605 True 542.000000 542 82.843000 173 783 1 chr2D.!!$R1 610
8 TraesCS5A01G447300 chr2D 604074439 604075045 606 True 529.000000 529 82.488000 162 768 1 chr2D.!!$R2 606
9 TraesCS5A01G447300 chr6D 13062163 13062775 612 False 540.000000 540 82.714000 173 785 1 chr6D.!!$F1 612
10 TraesCS5A01G447300 chr7A 30868702 30871004 2302 False 518.500000 527 81.964500 163 789 2 chr7A.!!$F1 626
11 TraesCS5A01G447300 chr1B 578101533 578102086 553 False 510.000000 510 83.993000 1089 1644 1 chr1B.!!$F1 555
12 TraesCS5A01G447300 chr2A 441108046 441108996 950 False 469.500000 473 85.216000 1089 2091 2 chr2A.!!$F1 1002
13 TraesCS5A01G447300 chr4A 281593971 281594511 540 True 420.000000 420 81.520000 1089 1644 1 chr4A.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.034896 AGACGAGCCCACGAATGTTT 59.965 50.0 0.00 0.00 37.03 2.83 F
75 76 0.165944 GACGAGCCCACGAATGTTTG 59.834 55.0 0.00 0.00 37.03 2.93 F
1282 3138 0.178903 AGTCAACAGGTGCCCTCCTA 60.179 55.0 0.00 0.00 35.87 2.94 F
2736 4834 0.036577 CTGAAGCCTAGTGCACTGCT 60.037 55.0 29.57 25.59 44.83 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1279 3135 0.522180 CGAGGGAACGATCGGATAGG 59.478 60.0 20.98 0.00 35.14 2.57 R
1539 3408 0.889306 GGGTGACGAGCTAGTTCAGT 59.111 55.0 7.41 5.70 0.00 3.41 R
3256 5557 0.033781 TTTTGGCAGGTGCATGCTTC 59.966 50.0 20.33 11.78 45.75 3.86 R
4083 6414 1.002250 CAGACGACACGTTTCCCTCG 61.002 60.0 0.00 0.00 41.37 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.112113 GATGACCGGCTTCTCTACCA 58.888 55.000 0.00 0.00 0.00 3.25
37 38 1.480954 GATGACCGGCTTCTCTACCAA 59.519 52.381 0.00 0.00 0.00 3.67
38 39 1.568504 TGACCGGCTTCTCTACCAAT 58.431 50.000 0.00 0.00 0.00 3.16
39 40 1.480954 TGACCGGCTTCTCTACCAATC 59.519 52.381 0.00 0.00 0.00 2.67
42 43 1.069358 CCGGCTTCTCTACCAATCTCC 59.931 57.143 0.00 0.00 0.00 3.71
43 44 1.757118 CGGCTTCTCTACCAATCTCCA 59.243 52.381 0.00 0.00 0.00 3.86
44 45 2.482142 CGGCTTCTCTACCAATCTCCAC 60.482 54.545 0.00 0.00 0.00 4.02
45 46 2.482142 GGCTTCTCTACCAATCTCCACG 60.482 54.545 0.00 0.00 0.00 4.94
46 47 2.427453 GCTTCTCTACCAATCTCCACGA 59.573 50.000 0.00 0.00 0.00 4.35
47 48 3.119101 GCTTCTCTACCAATCTCCACGAA 60.119 47.826 0.00 0.00 0.00 3.85
48 49 4.425520 CTTCTCTACCAATCTCCACGAAC 58.574 47.826 0.00 0.00 0.00 3.95
49 50 3.427573 TCTCTACCAATCTCCACGAACA 58.572 45.455 0.00 0.00 0.00 3.18
50 51 3.444034 TCTCTACCAATCTCCACGAACAG 59.556 47.826 0.00 0.00 0.00 3.16
51 52 2.496070 TCTACCAATCTCCACGAACAGG 59.504 50.000 0.00 0.00 0.00 4.00
52 53 1.056660 ACCAATCTCCACGAACAGGT 58.943 50.000 0.00 0.00 0.00 4.00
53 54 1.002087 ACCAATCTCCACGAACAGGTC 59.998 52.381 0.00 0.00 0.00 3.85
54 55 1.676014 CCAATCTCCACGAACAGGTCC 60.676 57.143 0.00 0.00 0.00 4.46
55 56 1.001974 CAATCTCCACGAACAGGTCCA 59.998 52.381 0.00 0.00 0.00 4.02
56 57 0.898320 ATCTCCACGAACAGGTCCAG 59.102 55.000 0.00 0.00 0.00 3.86
57 58 0.178973 TCTCCACGAACAGGTCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
58 59 0.038159 CTCCACGAACAGGTCCAGAC 60.038 60.000 0.00 0.00 0.00 3.51
59 60 1.372997 CCACGAACAGGTCCAGACG 60.373 63.158 0.00 0.00 0.00 4.18
60 61 1.658114 CACGAACAGGTCCAGACGA 59.342 57.895 10.91 0.00 0.00 4.20
61 62 0.387367 CACGAACAGGTCCAGACGAG 60.387 60.000 10.91 2.27 0.00 4.18
62 63 1.444553 CGAACAGGTCCAGACGAGC 60.445 63.158 0.00 0.00 39.41 5.03
63 64 1.079750 GAACAGGTCCAGACGAGCC 60.080 63.158 0.00 0.00 40.01 4.70
64 65 2.508586 GAACAGGTCCAGACGAGCCC 62.509 65.000 0.00 0.00 40.01 5.19
65 66 2.997315 CAGGTCCAGACGAGCCCA 60.997 66.667 0.00 0.00 40.01 5.36
66 67 2.997897 AGGTCCAGACGAGCCCAC 60.998 66.667 0.00 0.00 40.01 4.61
67 68 4.436998 GGTCCAGACGAGCCCACG 62.437 72.222 0.00 0.00 39.31 4.94
68 69 3.371063 GTCCAGACGAGCCCACGA 61.371 66.667 0.00 0.00 37.03 4.35
69 70 2.599281 TCCAGACGAGCCCACGAA 60.599 61.111 0.00 0.00 37.03 3.85
70 71 1.982395 TCCAGACGAGCCCACGAAT 60.982 57.895 0.00 0.00 37.03 3.34
71 72 1.811266 CCAGACGAGCCCACGAATG 60.811 63.158 0.00 0.00 37.03 2.67
72 73 1.079819 CAGACGAGCCCACGAATGT 60.080 57.895 0.00 0.00 37.03 2.71
73 74 0.670546 CAGACGAGCCCACGAATGTT 60.671 55.000 0.00 0.00 37.03 2.71
74 75 0.034896 AGACGAGCCCACGAATGTTT 59.965 50.000 0.00 0.00 37.03 2.83
75 76 0.165944 GACGAGCCCACGAATGTTTG 59.834 55.000 0.00 0.00 37.03 2.93
76 77 1.234615 ACGAGCCCACGAATGTTTGG 61.235 55.000 0.00 0.00 37.03 3.28
81 82 2.727103 CCACGAATGTTTGGGGTGT 58.273 52.632 0.00 0.00 29.97 4.16
82 83 0.596082 CCACGAATGTTTGGGGTGTC 59.404 55.000 0.00 0.00 29.97 3.67
83 84 0.596082 CACGAATGTTTGGGGTGTCC 59.404 55.000 0.00 0.00 0.00 4.02
84 85 0.183971 ACGAATGTTTGGGGTGTCCA 59.816 50.000 0.00 0.00 45.43 4.02
85 86 1.203001 ACGAATGTTTGGGGTGTCCAT 60.203 47.619 0.00 0.00 46.52 3.41
86 87 2.040545 ACGAATGTTTGGGGTGTCCATA 59.959 45.455 0.00 0.00 46.52 2.74
87 88 2.422127 CGAATGTTTGGGGTGTCCATAC 59.578 50.000 0.00 0.00 46.52 2.39
88 89 2.122783 ATGTTTGGGGTGTCCATACG 57.877 50.000 0.00 0.00 46.32 3.06
89 90 0.766131 TGTTTGGGGTGTCCATACGT 59.234 50.000 0.00 0.00 46.32 3.57
90 91 1.270947 TGTTTGGGGTGTCCATACGTC 60.271 52.381 0.00 0.00 46.32 4.34
91 92 0.325602 TTTGGGGTGTCCATACGTCC 59.674 55.000 0.00 0.00 46.52 4.79
92 93 1.890625 TTGGGGTGTCCATACGTCCG 61.891 60.000 0.00 0.00 46.52 4.79
93 94 2.053865 GGGGTGTCCATACGTCCGA 61.054 63.158 0.00 0.00 35.00 4.55
94 95 1.397390 GGGGTGTCCATACGTCCGAT 61.397 60.000 0.00 0.00 35.00 4.18
95 96 0.462789 GGGTGTCCATACGTCCGATT 59.537 55.000 0.00 0.00 0.00 3.34
96 97 1.567504 GGTGTCCATACGTCCGATTG 58.432 55.000 0.00 0.00 0.00 2.67
97 98 1.567504 GTGTCCATACGTCCGATTGG 58.432 55.000 0.00 0.00 0.00 3.16
98 99 1.135527 GTGTCCATACGTCCGATTGGA 59.864 52.381 0.00 0.00 43.88 3.53
123 124 6.978412 CGTATGACGTTATGCAATAGGTATG 58.022 40.000 8.98 0.00 36.74 2.39
124 125 6.804783 CGTATGACGTTATGCAATAGGTATGA 59.195 38.462 8.98 0.00 36.74 2.15
125 126 7.488150 CGTATGACGTTATGCAATAGGTATGAT 59.512 37.037 8.98 0.00 36.74 2.45
126 127 7.601073 ATGACGTTATGCAATAGGTATGATG 57.399 36.000 0.00 0.00 0.00 3.07
127 128 5.408299 TGACGTTATGCAATAGGTATGATGC 59.592 40.000 0.00 0.00 39.22 3.91
128 129 4.695455 ACGTTATGCAATAGGTATGATGCC 59.305 41.667 0.00 0.00 38.00 4.40
129 130 4.694982 CGTTATGCAATAGGTATGATGCCA 59.305 41.667 1.58 0.00 38.00 4.92
130 131 5.181056 CGTTATGCAATAGGTATGATGCCAA 59.819 40.000 1.58 0.00 38.00 4.52
131 132 6.615088 GTTATGCAATAGGTATGATGCCAAG 58.385 40.000 1.58 0.00 38.00 3.61
132 133 4.169059 TGCAATAGGTATGATGCCAAGT 57.831 40.909 1.58 0.00 38.00 3.16
133 134 4.535781 TGCAATAGGTATGATGCCAAGTT 58.464 39.130 1.58 0.00 38.00 2.66
134 135 4.338964 TGCAATAGGTATGATGCCAAGTTG 59.661 41.667 1.58 5.00 38.00 3.16
135 136 4.580167 GCAATAGGTATGATGCCAAGTTGA 59.420 41.667 3.87 0.00 32.73 3.18
136 137 5.242393 GCAATAGGTATGATGCCAAGTTGAT 59.758 40.000 3.87 0.00 32.73 2.57
137 138 6.569226 GCAATAGGTATGATGCCAAGTTGATC 60.569 42.308 3.87 0.91 32.73 2.92
138 139 4.508551 AGGTATGATGCCAAGTTGATCA 57.491 40.909 3.87 7.06 0.00 2.92
139 140 4.858850 AGGTATGATGCCAAGTTGATCAA 58.141 39.130 3.38 3.38 30.14 2.57
140 141 5.263599 AGGTATGATGCCAAGTTGATCAAA 58.736 37.500 10.35 0.00 30.14 2.69
141 142 5.359009 AGGTATGATGCCAAGTTGATCAAAG 59.641 40.000 10.35 3.33 30.14 2.77
142 143 3.581024 TGATGCCAAGTTGATCAAAGC 57.419 42.857 10.35 11.33 0.00 3.51
143 144 2.095110 TGATGCCAAGTTGATCAAAGCG 60.095 45.455 10.35 1.00 0.00 4.68
144 145 1.603456 TGCCAAGTTGATCAAAGCGA 58.397 45.000 10.35 0.52 0.00 4.93
145 146 2.161855 TGCCAAGTTGATCAAAGCGAT 58.838 42.857 10.35 0.00 36.91 4.58
146 147 2.557924 TGCCAAGTTGATCAAAGCGATT 59.442 40.909 10.35 0.00 33.17 3.34
147 148 2.919229 GCCAAGTTGATCAAAGCGATTG 59.081 45.455 10.35 9.95 40.58 2.67
148 149 2.919229 CCAAGTTGATCAAAGCGATTGC 59.081 45.455 10.35 0.00 38.98 3.56
158 159 2.517166 GCGATTGCTTCCCTCCCC 60.517 66.667 0.00 0.00 38.39 4.81
159 160 2.193248 CGATTGCTTCCCTCCCCC 59.807 66.667 0.00 0.00 0.00 5.40
201 202 4.914581 ACTAGAGAAAACCTTCCTTCCCTT 59.085 41.667 0.00 0.00 31.28 3.95
323 330 8.567851 AGTAGATAGGTAGGGTTTTAGTTCTCT 58.432 37.037 0.00 0.00 0.00 3.10
359 366 0.546122 ATGGATGGCGGTGCTTCTTA 59.454 50.000 0.00 0.00 0.00 2.10
362 369 2.024414 GGATGGCGGTGCTTCTTATTT 58.976 47.619 0.00 0.00 0.00 1.40
480 487 0.179081 AGGTTAGGATTTCTCGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
577 585 0.462759 GCGCTGGTTCTTAGAGGCAT 60.463 55.000 0.00 0.00 0.00 4.40
587 595 0.461870 TTAGAGGCATGCGCACGAAT 60.462 50.000 14.90 0.00 41.24 3.34
634 643 0.179034 GGCAGGCTTCAGTATGGGAG 60.179 60.000 0.00 0.00 36.16 4.30
635 644 0.817229 GCAGGCTTCAGTATGGGAGC 60.817 60.000 0.00 0.00 42.33 4.70
636 645 0.531532 CAGGCTTCAGTATGGGAGCG 60.532 60.000 0.00 0.00 43.41 5.03
637 646 1.227674 GGCTTCAGTATGGGAGCGG 60.228 63.158 0.00 0.00 43.41 5.52
638 647 1.889573 GCTTCAGTATGGGAGCGGC 60.890 63.158 0.00 0.00 36.34 6.53
639 648 1.592669 CTTCAGTATGGGAGCGGCG 60.593 63.158 0.51 0.51 36.16 6.46
640 649 2.016393 CTTCAGTATGGGAGCGGCGA 62.016 60.000 12.98 0.00 36.16 5.54
641 650 2.279517 CAGTATGGGAGCGGCGAC 60.280 66.667 12.98 3.05 0.00 5.19
642 651 2.758327 AGTATGGGAGCGGCGACA 60.758 61.111 12.98 3.44 0.00 4.35
666 2372 3.170585 CGTCGGCGGTTCGTTCTC 61.171 66.667 7.21 0.00 0.00 2.87
746 2452 7.789273 TCAAGATGTTTTTGTACTTTCGGTA 57.211 32.000 0.00 0.00 0.00 4.02
839 2632 1.725973 GCTCGTGCGCTGGTTTTTC 60.726 57.895 9.73 0.00 0.00 2.29
891 2707 3.261951 CGGCGCTGGAACCGTATG 61.262 66.667 8.83 0.00 44.46 2.39
954 2775 4.135153 CGTCGTCTGGCCCAGGAG 62.135 72.222 11.68 5.45 31.51 3.69
1002 2824 1.037493 GAACCCAAAGTCACCAACCC 58.963 55.000 0.00 0.00 0.00 4.11
1148 3004 0.620121 CTCCCCTCTCCAGCTTCCTT 60.620 60.000 0.00 0.00 0.00 3.36
1153 3009 2.359107 CTCCAGCTTCCTTGCGCA 60.359 61.111 5.66 5.66 38.13 6.09
1276 3132 1.741770 CGCCTAGTCAACAGGTGCC 60.742 63.158 0.00 0.00 36.90 5.01
1277 3133 1.377333 GCCTAGTCAACAGGTGCCC 60.377 63.158 0.00 0.00 35.45 5.36
1278 3134 1.842381 GCCTAGTCAACAGGTGCCCT 61.842 60.000 0.00 0.00 35.45 5.19
1279 3135 0.250513 CCTAGTCAACAGGTGCCCTC 59.749 60.000 0.00 0.00 0.00 4.30
1282 3138 0.178903 AGTCAACAGGTGCCCTCCTA 60.179 55.000 0.00 0.00 35.87 2.94
1283 3139 0.912486 GTCAACAGGTGCCCTCCTAT 59.088 55.000 0.00 0.00 35.87 2.57
1286 3142 1.338136 AACAGGTGCCCTCCTATCCG 61.338 60.000 0.00 0.00 35.87 4.18
1291 3147 1.153061 TGCCCTCCTATCCGATCGT 59.847 57.895 15.09 0.00 0.00 3.73
1295 3151 0.889306 CCTCCTATCCGATCGTTCCC 59.111 60.000 15.09 0.00 0.00 3.97
1300 3156 1.878088 CTATCCGATCGTTCCCTCGAA 59.122 52.381 15.09 0.00 42.99 3.71
1302 3158 1.971481 TCCGATCGTTCCCTCGAATA 58.029 50.000 15.09 0.00 42.99 1.75
1337 3194 2.092211 CGACCAAGTACGTTTGCTGATC 59.908 50.000 0.00 0.00 0.00 2.92
1339 3196 2.288579 ACCAAGTACGTTTGCTGATCGA 60.289 45.455 0.00 0.00 0.00 3.59
1341 3198 2.279582 AGTACGTTTGCTGATCGAGG 57.720 50.000 0.00 0.00 0.00 4.63
1368 3225 4.916412 CGTCCTCGTATACCTGCG 57.084 61.111 0.00 0.00 0.00 5.18
1369 3226 2.020131 CGTCCTCGTATACCTGCGT 58.980 57.895 0.00 0.00 0.00 5.24
1520 3389 0.681564 ATCCTCGACCTCGTGAGCTT 60.682 55.000 0.00 0.00 40.80 3.74
1530 3399 2.759795 GTGAGCTTTCCTGCCCCT 59.240 61.111 0.00 0.00 0.00 4.79
1535 3404 3.744155 CTTTCCTGCCCCTCCCCC 61.744 72.222 0.00 0.00 0.00 5.40
1537 3406 3.848200 TTTCCTGCCCCTCCCCCTT 62.848 63.158 0.00 0.00 0.00 3.95
1538 3407 3.848200 TTCCTGCCCCTCCCCCTTT 62.848 63.158 0.00 0.00 0.00 3.11
1539 3408 2.286885 CCTGCCCCTCCCCCTTTA 60.287 66.667 0.00 0.00 0.00 1.85
1542 3411 1.926426 CTGCCCCTCCCCCTTTACTG 61.926 65.000 0.00 0.00 0.00 2.74
1543 3412 1.618447 GCCCCTCCCCCTTTACTGA 60.618 63.158 0.00 0.00 0.00 3.41
1544 3413 1.212250 GCCCCTCCCCCTTTACTGAA 61.212 60.000 0.00 0.00 0.00 3.02
1556 3447 4.167268 CCTTTACTGAACTAGCTCGTCAC 58.833 47.826 0.00 0.00 0.00 3.67
1558 3449 0.889306 ACTGAACTAGCTCGTCACCC 59.111 55.000 0.00 0.00 0.00 4.61
1559 3450 0.888619 CTGAACTAGCTCGTCACCCA 59.111 55.000 0.00 0.00 0.00 4.51
1573 3464 3.383761 GTCACCCAATTGCTTTTCTGTG 58.616 45.455 0.00 0.00 0.00 3.66
1584 3475 6.952773 TTGCTTTTCTGTGTTACTATGGTT 57.047 33.333 0.00 0.00 0.00 3.67
1586 3477 6.734137 TGCTTTTCTGTGTTACTATGGTTTG 58.266 36.000 0.00 0.00 0.00 2.93
1606 3501 6.204882 GGTTTGCTGTAACATACTTCAGACTT 59.795 38.462 0.00 0.00 0.00 3.01
1607 3502 7.386848 GGTTTGCTGTAACATACTTCAGACTTA 59.613 37.037 0.00 0.00 0.00 2.24
1608 3503 8.770828 GTTTGCTGTAACATACTTCAGACTTAA 58.229 33.333 0.00 0.00 0.00 1.85
1663 3563 7.391833 GGTTTCTGAATAATCTTTCTCCAGTGT 59.608 37.037 0.00 0.00 0.00 3.55
1664 3564 7.912056 TTCTGAATAATCTTTCTCCAGTGTG 57.088 36.000 0.00 0.00 0.00 3.82
1668 3568 6.825213 TGAATAATCTTTCTCCAGTGTGATGG 59.175 38.462 0.00 0.00 42.11 3.51
1672 3572 5.762179 TCTTTCTCCAGTGTGATGGTAAT 57.238 39.130 0.00 0.00 41.43 1.89
1674 3574 6.878317 TCTTTCTCCAGTGTGATGGTAATAG 58.122 40.000 0.00 0.00 41.43 1.73
1679 3579 6.326323 TCTCCAGTGTGATGGTAATAGCATAA 59.674 38.462 4.81 0.00 41.43 1.90
1699 3599 6.753744 GCATAATGTTTCTTTGTCCTGGATTC 59.246 38.462 0.00 0.00 0.00 2.52
1763 3665 3.580319 AGGAACCACCCCACCAGC 61.580 66.667 0.00 0.00 40.05 4.85
1768 3670 1.562475 GAACCACCCCACCAGCTTATA 59.438 52.381 0.00 0.00 0.00 0.98
1771 3673 1.774254 CCACCCCACCAGCTTATATGA 59.226 52.381 0.00 0.00 0.00 2.15
1772 3674 2.376518 CCACCCCACCAGCTTATATGAT 59.623 50.000 0.00 0.00 0.00 2.45
1811 3714 2.549754 GTCAGTGGGAATGTTCAGTGTG 59.450 50.000 0.00 0.00 36.16 3.82
1817 3720 3.181446 TGGGAATGTTCAGTGTGATGTGA 60.181 43.478 0.00 0.00 0.00 3.58
1819 3722 4.067896 GGAATGTTCAGTGTGATGTGAGT 58.932 43.478 0.00 0.00 0.00 3.41
1839 3743 4.127907 AGTCATGCTGCAAGTATCAGATG 58.872 43.478 6.36 0.00 37.07 2.90
1853 3757 6.821388 AGTATCAGATGTAGTTTGATGTCCC 58.179 40.000 0.00 0.00 33.81 4.46
1856 3760 4.115516 CAGATGTAGTTTGATGTCCCTCG 58.884 47.826 0.00 0.00 0.00 4.63
1860 3764 1.348064 AGTTTGATGTCCCTCGGTCA 58.652 50.000 0.00 0.00 0.00 4.02
1861 3765 1.276421 AGTTTGATGTCCCTCGGTCAG 59.724 52.381 0.00 0.00 0.00 3.51
1869 3773 1.301401 CCCTCGGTCAGTTCGCAAA 60.301 57.895 0.00 0.00 0.00 3.68
1876 3780 3.065510 TCGGTCAGTTCGCAAAAATTGAA 59.934 39.130 0.00 0.00 28.27 2.69
1890 3794 7.998212 CGCAAAAATTGAATAGACAAACACTTC 59.002 33.333 0.00 0.00 33.44 3.01
1926 3831 4.039973 TGTTCAGGGTTTAGTGTCGAGATT 59.960 41.667 0.00 0.00 0.00 2.40
1954 3859 4.650734 TGTGTTACAGCCAATCATTCTCA 58.349 39.130 0.00 0.00 0.00 3.27
1966 3871 4.794278 ATCATTCTCAAAAGCACATGCA 57.206 36.364 6.64 0.00 45.16 3.96
1994 3899 5.036117 ACAATGTTGTTCCTCTGTAGTGT 57.964 39.130 0.00 0.00 38.47 3.55
2040 3949 2.678336 GCATAACCCAGCTGTGTTAGAC 59.322 50.000 23.18 15.26 31.05 2.59
2085 3996 9.632638 AACAATATGTAGAATTACCAGCTGAAT 57.367 29.630 17.39 4.89 0.00 2.57
2093 4004 5.769662 AGAATTACCAGCTGAATGTGAACAA 59.230 36.000 17.39 0.00 0.00 2.83
2096 4007 2.035066 ACCAGCTGAATGTGAACAAAGC 59.965 45.455 17.39 7.63 33.66 3.51
2131 4046 6.714810 TGCTTCACAAAATATCTAGTTGGTGT 59.285 34.615 5.19 0.00 36.76 4.16
2143 4058 2.334977 AGTTGGTGTGGTATCTGTCCA 58.665 47.619 0.00 0.00 0.00 4.02
2158 4075 1.904537 TGTCCAGTCTGTCTGCATGAT 59.095 47.619 0.00 0.00 42.38 2.45
2174 4094 7.909121 GTCTGCATGATTTAGTTTCTTGATCAG 59.091 37.037 0.00 0.00 31.05 2.90
2195 4115 4.529769 CAGCATAATCAGATAGTCCCTCCA 59.470 45.833 0.00 0.00 0.00 3.86
2215 4145 1.087202 TACATGGCGTCCGCACATTC 61.087 55.000 14.19 0.00 44.11 2.67
2235 4165 3.897239 TCCAGTGTTCAACTTTGACCAT 58.103 40.909 0.00 0.00 36.83 3.55
2236 4166 3.882888 TCCAGTGTTCAACTTTGACCATC 59.117 43.478 0.00 0.00 36.83 3.51
2237 4167 3.631686 CCAGTGTTCAACTTTGACCATCA 59.368 43.478 0.00 0.00 36.83 3.07
2238 4168 4.097741 CCAGTGTTCAACTTTGACCATCAA 59.902 41.667 0.00 0.00 36.83 2.57
2239 4169 5.221303 CCAGTGTTCAACTTTGACCATCAAT 60.221 40.000 0.00 0.00 36.83 2.57
2240 4170 6.275335 CAGTGTTCAACTTTGACCATCAATT 58.725 36.000 0.00 0.00 36.83 2.32
2241 4171 6.757947 CAGTGTTCAACTTTGACCATCAATTT 59.242 34.615 0.00 0.00 36.83 1.82
2242 4172 6.757947 AGTGTTCAACTTTGACCATCAATTTG 59.242 34.615 0.00 6.92 36.11 2.32
2243 4173 6.756074 GTGTTCAACTTTGACCATCAATTTGA 59.244 34.615 0.75 0.75 37.16 2.69
2244 4174 6.756074 TGTTCAACTTTGACCATCAATTTGAC 59.244 34.615 0.15 9.79 37.93 3.18
2245 4175 5.841810 TCAACTTTGACCATCAATTTGACC 58.158 37.500 0.15 0.00 35.55 4.02
2246 4176 5.362143 TCAACTTTGACCATCAATTTGACCA 59.638 36.000 0.15 0.00 35.55 4.02
2247 4177 5.458041 ACTTTGACCATCAATTTGACCAG 57.542 39.130 0.15 0.00 36.11 4.00
2257 4187 7.178983 ACCATCAATTTGACCAGTGAAACATAT 59.821 33.333 0.15 0.00 41.43 1.78
2286 4216 3.354467 TCCACAAAAACCTGTACCGTTT 58.646 40.909 3.06 3.06 34.95 3.60
2292 4222 6.973474 CACAAAAACCTGTACCGTTTAATTCA 59.027 34.615 8.19 0.00 33.17 2.57
2296 4226 7.982761 AAACCTGTACCGTTTAATTCATACA 57.017 32.000 6.42 0.00 31.75 2.29
2298 4228 7.982761 ACCTGTACCGTTTAATTCATACAAA 57.017 32.000 0.00 0.00 0.00 2.83
2369 4299 5.484173 TTCGTCTAATTGATGGTCAATGC 57.516 39.130 5.99 0.00 45.57 3.56
2384 4314 5.695816 TGGTCAATGCTAAATCACAAAAAGC 59.304 36.000 0.00 0.00 0.00 3.51
2385 4315 5.695816 GGTCAATGCTAAATCACAAAAAGCA 59.304 36.000 0.00 0.00 46.30 3.91
2389 4319 4.630111 TGCTAAATCACAAAAAGCAAGGG 58.370 39.130 0.00 0.00 40.05 3.95
2404 4334 2.202783 GGGCGCCATGTGAATTGC 60.203 61.111 30.85 1.84 0.00 3.56
2432 4362 2.225167 GGAAGTACCAATTTCACCCCCA 60.225 50.000 0.00 0.00 38.79 4.96
2433 4363 3.565670 GGAAGTACCAATTTCACCCCCAT 60.566 47.826 0.00 0.00 38.79 4.00
2434 4364 3.382083 AGTACCAATTTCACCCCCATC 57.618 47.619 0.00 0.00 0.00 3.51
2435 4365 2.652348 AGTACCAATTTCACCCCCATCA 59.348 45.455 0.00 0.00 0.00 3.07
2437 4367 2.539302 ACCAATTTCACCCCCATCAAG 58.461 47.619 0.00 0.00 0.00 3.02
2443 4373 2.785357 TCACCCCCATCAAGGTTTTT 57.215 45.000 0.00 0.00 32.72 1.94
2527 4461 8.043710 AGTTAGAGTTGACATTAGAATCTTGGG 58.956 37.037 0.00 0.00 0.00 4.12
2528 4462 5.749462 AGAGTTGACATTAGAATCTTGGGG 58.251 41.667 0.00 0.00 0.00 4.96
2529 4463 4.273318 AGTTGACATTAGAATCTTGGGGC 58.727 43.478 0.00 0.00 0.00 5.80
2530 4464 4.016444 GTTGACATTAGAATCTTGGGGCA 58.984 43.478 0.00 0.00 0.00 5.36
2532 4466 4.870636 TGACATTAGAATCTTGGGGCAAT 58.129 39.130 0.00 0.00 0.00 3.56
2545 4643 4.374689 TGGGGCAATTGTAGTTTGTAGA 57.625 40.909 7.40 0.00 0.00 2.59
2651 4749 8.665685 GTGTAGATTATGTTTCTAACCAGTTGG 58.334 37.037 0.00 0.00 42.17 3.77
2665 4763 3.270877 CCAGTTGGTCATTAGTGCTACC 58.729 50.000 0.00 0.00 0.00 3.18
2684 4782 8.361139 GTGCTACCTCTATACATTATGACAGTT 58.639 37.037 0.00 0.00 0.00 3.16
2692 4790 9.143155 TCTATACATTATGACAGTTCCTTGCTA 57.857 33.333 0.00 0.00 0.00 3.49
2693 4791 9.935241 CTATACATTATGACAGTTCCTTGCTAT 57.065 33.333 0.00 0.00 0.00 2.97
2694 4792 8.839310 ATACATTATGACAGTTCCTTGCTATC 57.161 34.615 0.00 0.00 0.00 2.08
2695 4793 6.893583 ACATTATGACAGTTCCTTGCTATCT 58.106 36.000 0.00 0.00 0.00 1.98
2712 4810 9.212641 CTTGCTATCTCTGCTGCTTTAATAATA 57.787 33.333 0.00 0.00 0.00 0.98
2713 4811 9.559732 TTGCTATCTCTGCTGCTTTAATAATAA 57.440 29.630 0.00 0.00 0.00 1.40
2714 4812 9.730705 TGCTATCTCTGCTGCTTTAATAATAAT 57.269 29.630 0.00 0.00 0.00 1.28
2717 4815 7.986085 TCTCTGCTGCTTTAATAATAATCCC 57.014 36.000 0.00 0.00 0.00 3.85
2718 4816 7.749666 TCTCTGCTGCTTTAATAATAATCCCT 58.250 34.615 0.00 0.00 0.00 4.20
2719 4817 7.663081 TCTCTGCTGCTTTAATAATAATCCCTG 59.337 37.037 0.00 0.00 0.00 4.45
2720 4818 7.517320 TCTGCTGCTTTAATAATAATCCCTGA 58.483 34.615 0.00 0.00 0.00 3.86
2721 4819 7.998383 TCTGCTGCTTTAATAATAATCCCTGAA 59.002 33.333 0.00 0.00 0.00 3.02
2722 4820 8.169977 TGCTGCTTTAATAATAATCCCTGAAG 57.830 34.615 0.00 0.00 0.00 3.02
2723 4821 7.087007 GCTGCTTTAATAATAATCCCTGAAGC 58.913 38.462 0.00 0.00 37.92 3.86
2724 4822 7.524717 TGCTTTAATAATAATCCCTGAAGCC 57.475 36.000 0.00 0.00 36.93 4.35
2727 4825 8.951243 GCTTTAATAATAATCCCTGAAGCCTAG 58.049 37.037 0.00 0.00 32.93 3.02
2729 4827 9.793259 TTTAATAATAATCCCTGAAGCCTAGTG 57.207 33.333 0.00 0.00 0.00 2.74
2736 4834 0.036577 CTGAAGCCTAGTGCACTGCT 60.037 55.000 29.57 25.59 44.83 4.24
2738 4836 0.801251 GAAGCCTAGTGCACTGCTTG 59.199 55.000 35.70 20.59 43.63 4.01
2753 4851 3.223661 CTTGCTGAGCTTCTTCCGT 57.776 52.632 5.83 0.00 0.00 4.69
2757 4855 4.433615 CTTGCTGAGCTTCTTCCGTATTA 58.566 43.478 5.83 0.00 0.00 0.98
2758 4856 3.782046 TGCTGAGCTTCTTCCGTATTAC 58.218 45.455 5.83 0.00 0.00 1.89
2759 4857 3.194755 TGCTGAGCTTCTTCCGTATTACA 59.805 43.478 5.83 0.00 0.00 2.41
2760 4858 3.799420 GCTGAGCTTCTTCCGTATTACAG 59.201 47.826 0.00 0.00 0.00 2.74
2761 4859 4.440250 GCTGAGCTTCTTCCGTATTACAGA 60.440 45.833 0.00 0.00 0.00 3.41
2762 4860 4.995124 TGAGCTTCTTCCGTATTACAGAC 58.005 43.478 0.00 0.00 0.00 3.51
2763 4861 4.142227 TGAGCTTCTTCCGTATTACAGACC 60.142 45.833 0.00 0.00 0.00 3.85
2764 4862 4.024670 AGCTTCTTCCGTATTACAGACCT 58.975 43.478 0.00 0.00 0.00 3.85
2767 4865 5.490139 TTCTTCCGTATTACAGACCTACG 57.510 43.478 0.00 0.00 38.31 3.51
2779 4877 2.598686 GACCTACGGTCCTCAAATCC 57.401 55.000 1.55 0.00 46.19 3.01
2780 4878 2.108970 GACCTACGGTCCTCAAATCCT 58.891 52.381 1.55 0.00 46.19 3.24
3212 5513 7.045126 AGTAGTATTGACTATTGGACTGAGC 57.955 40.000 0.00 0.00 40.32 4.26
3217 5518 2.568956 TGACTATTGGACTGAGCTGCTT 59.431 45.455 2.53 0.00 0.00 3.91
3218 5519 3.769300 TGACTATTGGACTGAGCTGCTTA 59.231 43.478 2.53 0.00 0.00 3.09
3221 5522 5.749462 ACTATTGGACTGAGCTGCTTATTT 58.251 37.500 2.53 0.00 0.00 1.40
3222 5523 4.978083 ATTGGACTGAGCTGCTTATTTG 57.022 40.909 2.53 0.00 0.00 2.32
3224 5525 3.338249 TGGACTGAGCTGCTTATTTGAC 58.662 45.455 2.53 0.00 0.00 3.18
3231 5532 6.128172 ACTGAGCTGCTTATTTGACACATTAC 60.128 38.462 2.53 0.00 0.00 1.89
3232 5533 5.939883 TGAGCTGCTTATTTGACACATTACT 59.060 36.000 2.53 0.00 0.00 2.24
3234 5535 7.606073 TGAGCTGCTTATTTGACACATTACTAA 59.394 33.333 2.53 0.00 0.00 2.24
3235 5536 7.752695 AGCTGCTTATTTGACACATTACTAAC 58.247 34.615 0.00 0.00 0.00 2.34
3236 5537 7.390440 AGCTGCTTATTTGACACATTACTAACA 59.610 33.333 0.00 0.00 0.00 2.41
3237 5538 8.020819 GCTGCTTATTTGACACATTACTAACAA 58.979 33.333 0.00 0.00 0.00 2.83
3238 5539 9.546909 CTGCTTATTTGACACATTACTAACAAG 57.453 33.333 0.00 0.00 0.00 3.16
3239 5540 9.278978 TGCTTATTTGACACATTACTAACAAGA 57.721 29.630 0.00 0.00 0.00 3.02
3240 5541 9.760660 GCTTATTTGACACATTACTAACAAGAG 57.239 33.333 0.00 0.00 0.00 2.85
3243 5544 8.902540 ATTTGACACATTACTAACAAGAGTCA 57.097 30.769 0.00 0.00 0.00 3.41
3244 5545 8.902540 TTTGACACATTACTAACAAGAGTCAT 57.097 30.769 0.00 0.00 34.01 3.06
3245 5546 7.889589 TGACACATTACTAACAAGAGTCATG 57.110 36.000 0.00 0.00 37.17 3.07
3246 5547 7.666623 TGACACATTACTAACAAGAGTCATGA 58.333 34.615 1.66 0.00 35.50 3.07
3247 5548 8.314021 TGACACATTACTAACAAGAGTCATGAT 58.686 33.333 1.66 0.00 35.50 2.45
3248 5549 9.155975 GACACATTACTAACAAGAGTCATGATT 57.844 33.333 1.66 0.00 35.50 2.57
3249 5550 9.507329 ACACATTACTAACAAGAGTCATGATTT 57.493 29.630 1.66 0.00 35.50 2.17
3256 5557 8.997323 ACTAACAAGAGTCATGATTTTCTTCTG 58.003 33.333 13.82 9.49 0.00 3.02
3257 5558 9.212641 CTAACAAGAGTCATGATTTTCTTCTGA 57.787 33.333 13.82 0.86 0.00 3.27
3258 5559 8.455903 AACAAGAGTCATGATTTTCTTCTGAA 57.544 30.769 13.82 0.00 0.00 3.02
3259 5560 8.097078 ACAAGAGTCATGATTTTCTTCTGAAG 57.903 34.615 11.18 11.18 33.28 3.02
3260 5561 6.740411 AGAGTCATGATTTTCTTCTGAAGC 57.260 37.500 12.54 0.00 33.28 3.86
3261 5562 6.236409 AGAGTCATGATTTTCTTCTGAAGCA 58.764 36.000 12.54 4.98 33.28 3.91
3262 5563 6.885376 AGAGTCATGATTTTCTTCTGAAGCAT 59.115 34.615 12.54 7.03 33.28 3.79
3263 5564 6.853720 AGTCATGATTTTCTTCTGAAGCATG 58.146 36.000 19.96 19.96 38.24 4.06
3264 5565 5.515626 GTCATGATTTTCTTCTGAAGCATGC 59.484 40.000 20.66 10.51 37.62 4.06
3265 5566 5.184287 TCATGATTTTCTTCTGAAGCATGCA 59.816 36.000 21.98 12.75 37.62 3.96
3266 5567 4.801891 TGATTTTCTTCTGAAGCATGCAC 58.198 39.130 21.98 13.92 33.28 4.57
3267 5568 3.648339 TTTTCTTCTGAAGCATGCACC 57.352 42.857 21.98 11.41 33.28 5.01
3268 5569 2.574006 TTCTTCTGAAGCATGCACCT 57.426 45.000 21.98 3.18 0.00 4.00
3269 5570 1.817357 TCTTCTGAAGCATGCACCTG 58.183 50.000 21.98 14.20 0.00 4.00
3270 5571 0.170561 CTTCTGAAGCATGCACCTGC 59.829 55.000 21.98 4.04 42.62 4.85
3271 5572 1.246056 TTCTGAAGCATGCACCTGCC 61.246 55.000 21.98 2.41 43.33 4.85
3272 5573 1.974875 CTGAAGCATGCACCTGCCA 60.975 57.895 21.98 6.95 43.33 4.92
3273 5574 1.529152 CTGAAGCATGCACCTGCCAA 61.529 55.000 21.98 0.00 43.33 4.52
3274 5575 1.114119 TGAAGCATGCACCTGCCAAA 61.114 50.000 21.98 0.00 43.33 3.28
3275 5576 0.033781 GAAGCATGCACCTGCCAAAA 59.966 50.000 21.98 0.00 43.33 2.44
3276 5577 0.688487 AAGCATGCACCTGCCAAAAT 59.312 45.000 21.98 0.00 43.33 1.82
3277 5578 0.036765 AGCATGCACCTGCCAAAATG 60.037 50.000 21.98 0.00 43.33 2.32
3278 5579 0.320946 GCATGCACCTGCCAAAATGT 60.321 50.000 14.21 0.00 41.18 2.71
3279 5580 1.717194 CATGCACCTGCCAAAATGTC 58.283 50.000 0.00 0.00 41.18 3.06
3280 5581 0.609662 ATGCACCTGCCAAAATGTCC 59.390 50.000 0.00 0.00 41.18 4.02
3281 5582 0.469705 TGCACCTGCCAAAATGTCCT 60.470 50.000 0.00 0.00 41.18 3.85
3282 5583 1.202989 TGCACCTGCCAAAATGTCCTA 60.203 47.619 0.00 0.00 41.18 2.94
3283 5584 2.102578 GCACCTGCCAAAATGTCCTAT 58.897 47.619 0.00 0.00 34.31 2.57
3284 5585 2.497273 GCACCTGCCAAAATGTCCTATT 59.503 45.455 0.00 0.00 34.31 1.73
3285 5586 3.429410 GCACCTGCCAAAATGTCCTATTC 60.429 47.826 0.00 0.00 34.31 1.75
3286 5587 4.019174 CACCTGCCAAAATGTCCTATTCT 58.981 43.478 0.00 0.00 0.00 2.40
3287 5588 4.463891 CACCTGCCAAAATGTCCTATTCTT 59.536 41.667 0.00 0.00 0.00 2.52
3288 5589 4.463891 ACCTGCCAAAATGTCCTATTCTTG 59.536 41.667 0.00 0.00 0.00 3.02
3289 5590 4.463891 CCTGCCAAAATGTCCTATTCTTGT 59.536 41.667 0.00 0.00 0.00 3.16
3290 5591 5.047092 CCTGCCAAAATGTCCTATTCTTGTT 60.047 40.000 0.00 0.00 0.00 2.83
3291 5592 6.418057 TGCCAAAATGTCCTATTCTTGTTT 57.582 33.333 0.00 0.00 0.00 2.83
3292 5593 6.825610 TGCCAAAATGTCCTATTCTTGTTTT 58.174 32.000 0.00 0.00 0.00 2.43
3293 5594 7.278875 TGCCAAAATGTCCTATTCTTGTTTTT 58.721 30.769 0.00 0.00 0.00 1.94
3329 5630 9.823647 AATGTCTTACTCTTGTTATGATGGTAG 57.176 33.333 0.00 0.00 0.00 3.18
3330 5631 7.782049 TGTCTTACTCTTGTTATGATGGTAGG 58.218 38.462 0.00 0.00 0.00 3.18
3331 5632 7.399191 TGTCTTACTCTTGTTATGATGGTAGGT 59.601 37.037 0.00 0.00 0.00 3.08
3332 5633 8.910944 GTCTTACTCTTGTTATGATGGTAGGTA 58.089 37.037 0.00 0.00 0.00 3.08
3333 5634 9.132923 TCTTACTCTTGTTATGATGGTAGGTAG 57.867 37.037 0.00 0.00 0.00 3.18
3334 5635 6.163135 ACTCTTGTTATGATGGTAGGTAGC 57.837 41.667 0.00 0.00 0.00 3.58
3335 5636 5.661312 ACTCTTGTTATGATGGTAGGTAGCA 59.339 40.000 0.00 0.00 38.16 3.49
3336 5637 6.161855 TCTTGTTATGATGGTAGGTAGCAG 57.838 41.667 0.00 0.00 37.10 4.24
3337 5638 5.897250 TCTTGTTATGATGGTAGGTAGCAGA 59.103 40.000 0.00 0.00 37.10 4.26
3338 5639 5.791336 TGTTATGATGGTAGGTAGCAGAG 57.209 43.478 0.00 0.00 37.10 3.35
3339 5640 5.454966 TGTTATGATGGTAGGTAGCAGAGA 58.545 41.667 0.00 0.00 37.10 3.10
3340 5641 5.302059 TGTTATGATGGTAGGTAGCAGAGAC 59.698 44.000 0.00 0.00 37.10 3.36
3341 5642 3.382083 TGATGGTAGGTAGCAGAGACA 57.618 47.619 0.00 0.00 37.10 3.41
3342 5643 3.024547 TGATGGTAGGTAGCAGAGACAC 58.975 50.000 0.00 0.00 37.10 3.67
3343 5644 2.597578 TGGTAGGTAGCAGAGACACA 57.402 50.000 0.00 0.00 0.00 3.72
3344 5645 3.101643 TGGTAGGTAGCAGAGACACAT 57.898 47.619 0.00 0.00 0.00 3.21
3345 5646 3.441101 TGGTAGGTAGCAGAGACACATT 58.559 45.455 0.00 0.00 0.00 2.71
3346 5647 3.447586 TGGTAGGTAGCAGAGACACATTC 59.552 47.826 0.00 0.00 0.00 2.67
3347 5648 3.447586 GGTAGGTAGCAGAGACACATTCA 59.552 47.826 0.00 0.00 0.00 2.57
3348 5649 3.601443 AGGTAGCAGAGACACATTCAC 57.399 47.619 0.00 0.00 0.00 3.18
3349 5650 2.899900 AGGTAGCAGAGACACATTCACA 59.100 45.455 0.00 0.00 0.00 3.58
3350 5651 2.996621 GGTAGCAGAGACACATTCACAC 59.003 50.000 0.00 0.00 0.00 3.82
3351 5652 3.306364 GGTAGCAGAGACACATTCACACT 60.306 47.826 0.00 0.00 0.00 3.55
3352 5653 3.482156 AGCAGAGACACATTCACACTT 57.518 42.857 0.00 0.00 0.00 3.16
3353 5654 3.813443 AGCAGAGACACATTCACACTTT 58.187 40.909 0.00 0.00 0.00 2.66
3354 5655 3.562973 AGCAGAGACACATTCACACTTTG 59.437 43.478 0.00 0.00 0.00 2.77
3355 5656 3.313526 GCAGAGACACATTCACACTTTGT 59.686 43.478 0.00 0.00 0.00 2.83
3356 5657 4.201950 GCAGAGACACATTCACACTTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
3357 5658 5.007626 GCAGAGACACATTCACACTTTGTTA 59.992 40.000 0.00 0.00 0.00 2.41
3358 5659 6.293626 GCAGAGACACATTCACACTTTGTTAT 60.294 38.462 0.00 0.00 0.00 1.89
3359 5660 7.095229 GCAGAGACACATTCACACTTTGTTATA 60.095 37.037 0.00 0.00 0.00 0.98
3360 5661 8.939929 CAGAGACACATTCACACTTTGTTATAT 58.060 33.333 0.00 0.00 0.00 0.86
3361 5662 9.155975 AGAGACACATTCACACTTTGTTATATC 57.844 33.333 0.00 0.00 0.00 1.63
3362 5663 9.155975 GAGACACATTCACACTTTGTTATATCT 57.844 33.333 0.00 0.00 0.00 1.98
3363 5664 8.939929 AGACACATTCACACTTTGTTATATCTG 58.060 33.333 0.00 0.00 0.00 2.90
3364 5665 8.621532 ACACATTCACACTTTGTTATATCTGT 57.378 30.769 0.00 0.00 0.00 3.41
3365 5666 9.066892 ACACATTCACACTTTGTTATATCTGTT 57.933 29.630 0.00 0.00 0.00 3.16
3366 5667 9.333497 CACATTCACACTTTGTTATATCTGTTG 57.667 33.333 0.00 0.00 0.00 3.33
3367 5668 9.066892 ACATTCACACTTTGTTATATCTGTTGT 57.933 29.630 0.00 0.00 0.00 3.32
3368 5669 9.546909 CATTCACACTTTGTTATATCTGTTGTC 57.453 33.333 0.00 0.00 0.00 3.18
3369 5670 8.902540 TTCACACTTTGTTATATCTGTTGTCT 57.097 30.769 0.00 0.00 0.00 3.41
3370 5671 8.902540 TCACACTTTGTTATATCTGTTGTCTT 57.097 30.769 0.00 0.00 0.00 3.01
3371 5672 9.990360 TCACACTTTGTTATATCTGTTGTCTTA 57.010 29.630 0.00 0.00 0.00 2.10
3373 5674 9.998106 ACACTTTGTTATATCTGTTGTCTTACT 57.002 29.630 0.00 0.00 0.00 2.24
3404 5705 6.597832 AGACTGTGCTGTCTAAGTTATCTT 57.402 37.500 9.48 0.00 44.53 2.40
3405 5706 6.393990 AGACTGTGCTGTCTAAGTTATCTTG 58.606 40.000 9.48 0.00 44.53 3.02
3406 5707 6.015010 AGACTGTGCTGTCTAAGTTATCTTGT 60.015 38.462 9.48 0.00 44.53 3.16
3407 5708 6.525629 ACTGTGCTGTCTAAGTTATCTTGTT 58.474 36.000 0.00 0.00 35.36 2.83
3408 5709 7.667557 ACTGTGCTGTCTAAGTTATCTTGTTA 58.332 34.615 0.00 0.00 35.36 2.41
3409 5710 7.815068 ACTGTGCTGTCTAAGTTATCTTGTTAG 59.185 37.037 0.00 0.00 35.36 2.34
3410 5711 7.892609 TGTGCTGTCTAAGTTATCTTGTTAGA 58.107 34.615 0.00 0.00 35.36 2.10
3411 5712 8.531982 TGTGCTGTCTAAGTTATCTTGTTAGAT 58.468 33.333 0.00 0.00 43.51 1.98
3412 5713 8.812329 GTGCTGTCTAAGTTATCTTGTTAGATG 58.188 37.037 0.00 0.00 41.25 2.90
3413 5714 7.492669 TGCTGTCTAAGTTATCTTGTTAGATGC 59.507 37.037 0.00 0.00 41.25 3.91
3414 5715 7.708752 GCTGTCTAAGTTATCTTGTTAGATGCT 59.291 37.037 0.00 0.00 41.25 3.79
3415 5716 8.932945 TGTCTAAGTTATCTTGTTAGATGCTG 57.067 34.615 0.00 0.00 41.25 4.41
3416 5717 7.492669 TGTCTAAGTTATCTTGTTAGATGCTGC 59.507 37.037 0.00 0.00 41.25 5.25
3417 5718 6.986817 TCTAAGTTATCTTGTTAGATGCTGCC 59.013 38.462 0.00 0.00 41.25 4.85
3418 5719 5.365021 AGTTATCTTGTTAGATGCTGCCT 57.635 39.130 0.00 0.00 41.25 4.75
3419 5720 6.485830 AGTTATCTTGTTAGATGCTGCCTA 57.514 37.500 0.00 0.00 41.25 3.93
3420 5721 6.284459 AGTTATCTTGTTAGATGCTGCCTAC 58.716 40.000 0.00 0.00 41.25 3.18
3421 5722 4.760530 ATCTTGTTAGATGCTGCCTACA 57.239 40.909 0.00 0.00 39.66 2.74
3422 5723 4.551702 TCTTGTTAGATGCTGCCTACAA 57.448 40.909 0.00 0.12 0.00 2.41
3423 5724 4.507710 TCTTGTTAGATGCTGCCTACAAG 58.492 43.478 16.38 16.38 35.87 3.16
3424 5725 3.981071 TGTTAGATGCTGCCTACAAGT 57.019 42.857 0.00 0.00 0.00 3.16
3425 5726 3.599343 TGTTAGATGCTGCCTACAAGTG 58.401 45.455 0.00 0.00 0.00 3.16
3426 5727 3.007940 TGTTAGATGCTGCCTACAAGTGT 59.992 43.478 0.00 0.00 0.00 3.55
3427 5728 2.867109 AGATGCTGCCTACAAGTGTT 57.133 45.000 0.00 0.00 0.00 3.32
3428 5729 3.981071 AGATGCTGCCTACAAGTGTTA 57.019 42.857 0.00 0.00 0.00 2.41
3429 5730 4.494091 AGATGCTGCCTACAAGTGTTAT 57.506 40.909 0.00 0.00 0.00 1.89
3430 5731 4.848357 AGATGCTGCCTACAAGTGTTATT 58.152 39.130 0.00 0.00 0.00 1.40
3431 5732 4.637534 AGATGCTGCCTACAAGTGTTATTG 59.362 41.667 0.00 0.00 36.22 1.90
3432 5733 2.487762 TGCTGCCTACAAGTGTTATTGC 59.512 45.455 0.00 0.00 33.28 3.56
3433 5734 2.749621 GCTGCCTACAAGTGTTATTGCT 59.250 45.455 0.00 0.00 33.28 3.91
3434 5735 3.191371 GCTGCCTACAAGTGTTATTGCTT 59.809 43.478 0.00 0.00 33.28 3.91
3435 5736 4.672801 GCTGCCTACAAGTGTTATTGCTTC 60.673 45.833 0.00 0.00 33.28 3.86
3436 5737 4.651778 TGCCTACAAGTGTTATTGCTTCT 58.348 39.130 0.00 0.00 33.28 2.85
3437 5738 5.070001 TGCCTACAAGTGTTATTGCTTCTT 58.930 37.500 0.00 0.00 33.28 2.52
3438 5739 5.048782 TGCCTACAAGTGTTATTGCTTCTTG 60.049 40.000 0.00 0.00 40.54 3.02
3439 5740 5.393962 CCTACAAGTGTTATTGCTTCTTGC 58.606 41.667 0.00 0.00 38.99 4.01
3440 5741 4.243007 ACAAGTGTTATTGCTTCTTGCC 57.757 40.909 0.00 0.00 42.00 4.52
3441 5742 3.636300 ACAAGTGTTATTGCTTCTTGCCA 59.364 39.130 0.00 0.00 42.00 4.92
3442 5743 4.281688 ACAAGTGTTATTGCTTCTTGCCAT 59.718 37.500 0.00 0.00 42.00 4.40
3443 5744 4.708726 AGTGTTATTGCTTCTTGCCATC 57.291 40.909 0.00 0.00 42.00 3.51
3444 5745 4.081406 AGTGTTATTGCTTCTTGCCATCA 58.919 39.130 0.00 0.00 42.00 3.07
3445 5746 4.708421 AGTGTTATTGCTTCTTGCCATCAT 59.292 37.500 0.00 0.00 42.00 2.45
3446 5747 5.186409 AGTGTTATTGCTTCTTGCCATCATT 59.814 36.000 0.00 0.00 42.00 2.57
3447 5748 5.517770 GTGTTATTGCTTCTTGCCATCATTC 59.482 40.000 0.00 0.00 42.00 2.67
3448 5749 2.925578 TTGCTTCTTGCCATCATTCG 57.074 45.000 0.00 0.00 42.00 3.34
3449 5750 0.452987 TGCTTCTTGCCATCATTCGC 59.547 50.000 0.00 0.00 42.00 4.70
3450 5751 0.590732 GCTTCTTGCCATCATTCGCG 60.591 55.000 0.00 0.00 35.15 5.87
3451 5752 1.009078 CTTCTTGCCATCATTCGCGA 58.991 50.000 3.71 3.71 0.00 5.87
3452 5753 1.398041 CTTCTTGCCATCATTCGCGAA 59.602 47.619 25.66 25.66 0.00 4.70
3453 5754 1.667236 TCTTGCCATCATTCGCGAAT 58.333 45.000 27.94 27.94 0.00 3.34
3479 5780 9.187996 TGAAGAATATCAATAGCATCAAAACCA 57.812 29.630 0.00 0.00 0.00 3.67
3488 5789 8.267183 TCAATAGCATCAAAACCAGAAGAGATA 58.733 33.333 0.00 0.00 0.00 1.98
3492 5793 7.994194 AGCATCAAAACCAGAAGAGATATTTC 58.006 34.615 0.00 0.00 0.00 2.17
3516 5817 9.823647 TTCTTTATTTCCATACACTTGCAAAAA 57.176 25.926 0.00 0.00 0.00 1.94
3585 5915 5.242434 TCGCTTCCTGTATATTGTTTGTGT 58.758 37.500 0.00 0.00 0.00 3.72
3739 6069 6.831976 TCTTCTTCTGCCCCTCTAATATTTC 58.168 40.000 0.00 0.00 0.00 2.17
3959 6289 7.072177 TGAAACCATTATCGCAGTCTTAAAG 57.928 36.000 0.00 0.00 0.00 1.85
4050 6381 7.096353 CGCCATGATTTGTATTGTCATTTGATC 60.096 37.037 0.00 0.00 30.57 2.92
4059 6390 6.539826 TGTATTGTCATTTGATCTGTGCTAGG 59.460 38.462 0.00 0.00 0.00 3.02
4083 6414 1.963172 AGGTTTCACTTGTTCCCGTC 58.037 50.000 0.00 0.00 0.00 4.79
4126 6458 0.109132 GGTACTGTGCAGCCAAATGC 60.109 55.000 0.00 0.00 46.68 3.56
4187 6520 0.874390 TCACTGGCGCATTTTCACTC 59.126 50.000 10.83 0.00 0.00 3.51
4245 6579 2.574824 ACCGAATGTACTTTTAGGCCCT 59.425 45.455 0.00 0.00 0.00 5.19
4277 6611 5.484173 TTTGGTATTGATGACGAGCAATC 57.516 39.130 0.00 0.00 39.02 2.67
4293 6627 6.765036 ACGAGCAATCAAGAGATTAATGTGAT 59.235 34.615 0.00 0.00 42.46 3.06
4312 6648 6.898041 TGTGATCGTTAAGTTTGAAATCAGG 58.102 36.000 0.00 0.00 0.00 3.86
4342 6678 1.067495 AGAGCGAAGGTTGCAGAGTAC 60.067 52.381 0.00 0.00 39.88 2.73
4381 6717 8.767436 TGTATGCTCATATATTATAAGGTGGCA 58.233 33.333 0.00 0.00 0.00 4.92
4401 6737 7.390718 GGTGGCAATCCCTAGTTGTATATTTAG 59.609 40.741 0.00 0.00 0.00 1.85
4471 6808 4.951715 TGAATTGCTTCCTTGTATGCTCAT 59.048 37.500 0.00 0.00 0.00 2.90
4516 6854 2.575921 TCCCTCCATCCTCTTGACAT 57.424 50.000 0.00 0.00 0.00 3.06
4517 6855 2.402564 TCCCTCCATCCTCTTGACATC 58.597 52.381 0.00 0.00 0.00 3.06
4518 6856 1.419387 CCCTCCATCCTCTTGACATCC 59.581 57.143 0.00 0.00 0.00 3.51
4519 6857 2.406559 CCTCCATCCTCTTGACATCCT 58.593 52.381 0.00 0.00 0.00 3.24
4520 6858 3.581101 CCTCCATCCTCTTGACATCCTA 58.419 50.000 0.00 0.00 0.00 2.94
4521 6859 3.323403 CCTCCATCCTCTTGACATCCTAC 59.677 52.174 0.00 0.00 0.00 3.18
4522 6860 4.222336 CTCCATCCTCTTGACATCCTACT 58.778 47.826 0.00 0.00 0.00 2.57
4523 6861 4.624913 TCCATCCTCTTGACATCCTACTT 58.375 43.478 0.00 0.00 0.00 2.24
4524 6862 5.777449 TCCATCCTCTTGACATCCTACTTA 58.223 41.667 0.00 0.00 0.00 2.24
4525 6863 5.598830 TCCATCCTCTTGACATCCTACTTAC 59.401 44.000 0.00 0.00 0.00 2.34
4526 6864 5.363868 CCATCCTCTTGACATCCTACTTACA 59.636 44.000 0.00 0.00 0.00 2.41
4736 7074 9.577110 GAAATGAAAGAATAAGATGATGCAACA 57.423 29.630 0.00 0.00 0.00 3.33
4740 7078 8.741841 TGAAAGAATAAGATGATGCAACATTCA 58.258 29.630 11.11 5.47 0.00 2.57
4809 7147 2.242965 TCTGGATTCATGGAATGTGCCT 59.757 45.455 0.00 0.00 46.80 4.75
4814 7152 0.107066 TCATGGAATGTGCCTGCGAT 60.107 50.000 0.00 0.00 46.80 4.58
4837 7175 4.442375 TTCTTCGGAGAAGATGTCACTC 57.558 45.455 12.53 0.00 45.90 3.51
4845 7183 3.696051 GAGAAGATGTCACTCTCTCTGCT 59.304 47.826 0.00 0.00 0.00 4.24
4850 7188 3.712016 TGTCACTCTCTCTGCTACTCT 57.288 47.619 0.00 0.00 0.00 3.24
4938 7276 5.985530 CGTAGTTCCTATGATCTCATTTGCA 59.014 40.000 0.00 0.00 37.76 4.08
4946 7284 2.813172 TGATCTCATTTGCACGCTTCAA 59.187 40.909 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.232941 GACCTGTTCGTGGAGATTGGTA 59.767 50.000 0.00 0.00 0.00 3.25
33 34 1.002087 GACCTGTTCGTGGAGATTGGT 59.998 52.381 0.00 0.00 0.00 3.67
36 37 1.276421 CTGGACCTGTTCGTGGAGATT 59.724 52.381 0.00 0.00 0.00 2.40
37 38 0.898320 CTGGACCTGTTCGTGGAGAT 59.102 55.000 0.00 0.00 0.00 2.75
38 39 0.178973 TCTGGACCTGTTCGTGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
39 40 0.038159 GTCTGGACCTGTTCGTGGAG 60.038 60.000 0.00 0.00 0.00 3.86
42 43 0.387367 CTCGTCTGGACCTGTTCGTG 60.387 60.000 14.06 10.26 0.00 4.35
43 44 1.957562 CTCGTCTGGACCTGTTCGT 59.042 57.895 14.06 0.00 0.00 3.85
44 45 1.444553 GCTCGTCTGGACCTGTTCG 60.445 63.158 0.00 3.04 0.00 3.95
45 46 1.079750 GGCTCGTCTGGACCTGTTC 60.080 63.158 0.00 0.00 0.00 3.18
46 47 2.584391 GGGCTCGTCTGGACCTGTT 61.584 63.158 0.00 0.00 0.00 3.16
47 48 2.997897 GGGCTCGTCTGGACCTGT 60.998 66.667 0.00 0.00 0.00 4.00
48 49 2.997315 TGGGCTCGTCTGGACCTG 60.997 66.667 0.00 0.00 0.00 4.00
49 50 2.997897 GTGGGCTCGTCTGGACCT 60.998 66.667 0.00 0.00 0.00 3.85
50 51 4.436998 CGTGGGCTCGTCTGGACC 62.437 72.222 0.00 0.00 0.00 4.46
51 52 2.227089 ATTCGTGGGCTCGTCTGGAC 62.227 60.000 3.18 0.00 0.00 4.02
52 53 1.982395 ATTCGTGGGCTCGTCTGGA 60.982 57.895 3.18 0.00 0.00 3.86
53 54 1.811266 CATTCGTGGGCTCGTCTGG 60.811 63.158 3.18 0.00 0.00 3.86
54 55 0.670546 AACATTCGTGGGCTCGTCTG 60.671 55.000 3.18 4.84 0.00 3.51
55 56 0.034896 AAACATTCGTGGGCTCGTCT 59.965 50.000 3.18 0.00 0.00 4.18
56 57 0.165944 CAAACATTCGTGGGCTCGTC 59.834 55.000 3.18 0.00 0.00 4.20
57 58 1.234615 CCAAACATTCGTGGGCTCGT 61.235 55.000 3.18 0.00 0.00 4.18
58 59 1.501741 CCAAACATTCGTGGGCTCG 59.498 57.895 0.00 0.00 0.00 5.03
63 64 0.596082 GACACCCCAAACATTCGTGG 59.404 55.000 0.00 0.00 34.44 4.94
64 65 0.596082 GGACACCCCAAACATTCGTG 59.404 55.000 0.00 0.00 34.14 4.35
65 66 0.183971 TGGACACCCCAAACATTCGT 59.816 50.000 0.00 0.00 43.29 3.85
66 67 3.028916 TGGACACCCCAAACATTCG 57.971 52.632 0.00 0.00 43.29 3.34
75 76 1.397390 ATCGGACGTATGGACACCCC 61.397 60.000 0.00 0.00 0.00 4.95
76 77 0.462789 AATCGGACGTATGGACACCC 59.537 55.000 0.00 0.00 0.00 4.61
77 78 1.567504 CAATCGGACGTATGGACACC 58.432 55.000 0.00 0.00 0.00 4.16
78 79 1.135527 TCCAATCGGACGTATGGACAC 59.864 52.381 14.03 0.00 37.05 3.67
79 80 1.476477 TCCAATCGGACGTATGGACA 58.524 50.000 14.03 0.00 37.05 4.02
89 90 3.930400 CGTCATACGTCCAATCGGA 57.070 52.632 0.00 0.00 36.74 4.55
100 101 8.595533 CATCATACCTATTGCATAACGTCATAC 58.404 37.037 0.00 0.00 0.00 2.39
101 102 7.277760 GCATCATACCTATTGCATAACGTCATA 59.722 37.037 0.00 0.00 35.22 2.15
102 103 6.092670 GCATCATACCTATTGCATAACGTCAT 59.907 38.462 0.00 0.00 35.22 3.06
103 104 5.408299 GCATCATACCTATTGCATAACGTCA 59.592 40.000 0.00 0.00 35.22 4.35
104 105 5.163854 GGCATCATACCTATTGCATAACGTC 60.164 44.000 0.00 0.00 36.82 4.34
105 106 4.695455 GGCATCATACCTATTGCATAACGT 59.305 41.667 0.00 0.00 36.82 3.99
106 107 4.694982 TGGCATCATACCTATTGCATAACG 59.305 41.667 0.00 0.00 36.82 3.18
107 108 6.207417 ACTTGGCATCATACCTATTGCATAAC 59.793 38.462 0.00 0.00 36.82 1.89
108 109 6.306199 ACTTGGCATCATACCTATTGCATAA 58.694 36.000 0.00 0.00 36.82 1.90
109 110 5.879763 ACTTGGCATCATACCTATTGCATA 58.120 37.500 0.00 0.00 36.82 3.14
110 111 4.733165 ACTTGGCATCATACCTATTGCAT 58.267 39.130 0.00 0.00 36.82 3.96
111 112 4.169059 ACTTGGCATCATACCTATTGCA 57.831 40.909 0.00 0.00 36.82 4.08
112 113 4.580167 TCAACTTGGCATCATACCTATTGC 59.420 41.667 0.00 0.00 0.00 3.56
113 114 6.487668 TGATCAACTTGGCATCATACCTATTG 59.512 38.462 0.00 0.00 0.00 1.90
114 115 6.604171 TGATCAACTTGGCATCATACCTATT 58.396 36.000 0.00 0.00 0.00 1.73
115 116 6.191657 TGATCAACTTGGCATCATACCTAT 57.808 37.500 0.00 0.00 0.00 2.57
116 117 5.628797 TGATCAACTTGGCATCATACCTA 57.371 39.130 0.00 0.00 0.00 3.08
117 118 4.508551 TGATCAACTTGGCATCATACCT 57.491 40.909 0.00 0.00 0.00 3.08
118 119 5.581126 TTTGATCAACTTGGCATCATACC 57.419 39.130 7.89 0.00 0.00 2.73
119 120 5.039333 GCTTTGATCAACTTGGCATCATAC 58.961 41.667 7.89 0.00 0.00 2.39
120 121 4.201940 CGCTTTGATCAACTTGGCATCATA 60.202 41.667 7.89 0.00 0.00 2.15
121 122 3.428452 CGCTTTGATCAACTTGGCATCAT 60.428 43.478 7.89 0.00 0.00 2.45
122 123 2.095110 CGCTTTGATCAACTTGGCATCA 60.095 45.455 7.89 0.00 0.00 3.07
123 124 2.162208 TCGCTTTGATCAACTTGGCATC 59.838 45.455 7.89 0.00 0.00 3.91
124 125 2.161855 TCGCTTTGATCAACTTGGCAT 58.838 42.857 7.89 0.00 0.00 4.40
125 126 1.603456 TCGCTTTGATCAACTTGGCA 58.397 45.000 7.89 0.00 0.00 4.92
126 127 2.919229 CAATCGCTTTGATCAACTTGGC 59.081 45.455 7.89 9.34 37.53 4.52
127 128 2.919229 GCAATCGCTTTGATCAACTTGG 59.081 45.455 7.89 0.37 37.53 3.61
141 142 2.517166 GGGGAGGGAAGCAATCGC 60.517 66.667 0.00 0.00 41.15 4.58
142 143 2.193248 GGGGGAGGGAAGCAATCG 59.807 66.667 0.00 0.00 0.00 3.34
164 165 2.441532 TAGTCGCCTTCCCGGGAG 60.442 66.667 25.26 14.84 0.00 4.30
165 166 2.441532 CTAGTCGCCTTCCCGGGA 60.442 66.667 22.63 22.63 0.00 5.14
166 167 2.441532 TCTAGTCGCCTTCCCGGG 60.442 66.667 16.85 16.85 0.00 5.73
167 168 1.035932 TTCTCTAGTCGCCTTCCCGG 61.036 60.000 0.00 0.00 0.00 5.73
168 169 0.815734 TTTCTCTAGTCGCCTTCCCG 59.184 55.000 0.00 0.00 0.00 5.14
169 170 2.619147 GTTTTCTCTAGTCGCCTTCCC 58.381 52.381 0.00 0.00 0.00 3.97
170 171 2.234168 AGGTTTTCTCTAGTCGCCTTCC 59.766 50.000 0.00 0.00 0.00 3.46
264 265 1.165782 ACCAGAAATCCCCTCCCCA 59.834 57.895 0.00 0.00 0.00 4.96
359 366 1.886542 GCCCGGAAAACTGACTCAAAT 59.113 47.619 0.73 0.00 0.00 2.32
362 369 0.034896 GAGCCCGGAAAACTGACTCA 59.965 55.000 0.73 0.00 0.00 3.41
426 433 1.069204 GCTGGCAGGAATCTACGATGA 59.931 52.381 17.64 0.00 0.00 2.92
429 436 0.747255 GAGCTGGCAGGAATCTACGA 59.253 55.000 17.64 0.00 0.00 3.43
488 495 4.955925 TTGACATCAAATATCGCCGTTT 57.044 36.364 0.00 0.00 32.11 3.60
552 560 1.002624 TAAGAACCAGCGCCCCAAG 60.003 57.895 2.29 0.00 0.00 3.61
553 561 1.002624 CTAAGAACCAGCGCCCCAA 60.003 57.895 2.29 0.00 0.00 4.12
566 574 1.519234 CGTGCGCATGCCTCTAAGA 60.519 57.895 18.03 0.00 41.78 2.10
587 595 5.447624 TTGTCGATGACAGTTGAGAAGTA 57.552 39.130 0.00 0.00 43.69 2.24
723 2429 8.844441 TTTACCGAAAGTACAAAAACATCTTG 57.156 30.769 0.00 0.00 0.00 3.02
822 2615 0.307760 AAGAAAAACCAGCGCACGAG 59.692 50.000 11.47 0.00 0.00 4.18
885 2701 1.515519 CACGTCGACACCCATACGG 60.516 63.158 17.16 0.00 39.57 4.02
923 2744 2.665185 GACGACAAAGCCAGGCGT 60.665 61.111 5.55 0.00 37.97 5.68
975 2796 0.521735 GACTTTGGGTTCGTGATGGC 59.478 55.000 0.00 0.00 0.00 4.40
1002 2824 0.671781 CCTCTTCACAAGTCGGGCTG 60.672 60.000 0.00 0.00 0.00 4.85
1276 3132 0.889306 GGGAACGATCGGATAGGAGG 59.111 60.000 20.98 0.00 0.00 4.30
1277 3133 1.813786 GAGGGAACGATCGGATAGGAG 59.186 57.143 20.98 0.00 0.00 3.69
1278 3134 1.881072 CGAGGGAACGATCGGATAGGA 60.881 57.143 20.98 0.00 35.14 2.94
1279 3135 0.522180 CGAGGGAACGATCGGATAGG 59.478 60.000 20.98 0.00 35.14 2.57
1282 3138 1.329256 ATTCGAGGGAACGATCGGAT 58.671 50.000 20.98 7.81 41.82 4.18
1283 3139 1.971481 TATTCGAGGGAACGATCGGA 58.029 50.000 20.98 1.66 41.82 4.55
1286 3142 3.675698 GCTGAATATTCGAGGGAACGATC 59.324 47.826 10.80 0.00 41.82 3.69
1291 3147 3.070159 CAGAGGCTGAATATTCGAGGGAA 59.930 47.826 10.80 0.00 32.92 3.97
1295 3151 3.037431 CCCAGAGGCTGAATATTCGAG 57.963 52.381 10.80 9.94 32.44 4.04
1317 3173 2.092211 CGATCAGCAAACGTACTTGGTC 59.908 50.000 1.82 0.00 34.89 4.02
1520 3389 2.440196 TAAAGGGGGAGGGGCAGGAA 62.440 60.000 0.00 0.00 0.00 3.36
1530 3399 3.105283 GAGCTAGTTCAGTAAAGGGGGA 58.895 50.000 1.11 0.00 0.00 4.81
1535 3404 4.167268 GGTGACGAGCTAGTTCAGTAAAG 58.833 47.826 7.41 0.00 0.00 1.85
1537 3406 2.490903 GGGTGACGAGCTAGTTCAGTAA 59.509 50.000 7.41 0.00 0.00 2.24
1538 3407 2.089980 GGGTGACGAGCTAGTTCAGTA 58.910 52.381 7.41 0.00 0.00 2.74
1539 3408 0.889306 GGGTGACGAGCTAGTTCAGT 59.111 55.000 7.41 5.70 0.00 3.41
1542 3411 2.673368 CAATTGGGTGACGAGCTAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
1543 3412 2.699954 CAATTGGGTGACGAGCTAGTT 58.300 47.619 0.00 0.00 0.00 2.24
1544 3413 1.676014 GCAATTGGGTGACGAGCTAGT 60.676 52.381 7.72 0.00 0.00 2.57
1556 3447 5.200368 AGTAACACAGAAAAGCAATTGGG 57.800 39.130 7.72 0.00 0.00 4.12
1558 3449 7.370383 ACCATAGTAACACAGAAAAGCAATTG 58.630 34.615 0.00 0.00 0.00 2.32
1559 3450 7.524717 ACCATAGTAACACAGAAAAGCAATT 57.475 32.000 0.00 0.00 0.00 2.32
1573 3464 8.488651 AGTATGTTACAGCAAACCATAGTAAC 57.511 34.615 0.00 0.00 42.79 2.50
1584 3475 8.896320 TTTAAGTCTGAAGTATGTTACAGCAA 57.104 30.769 0.00 0.00 0.00 3.91
1615 3510 6.326970 ACCAAGAATATCCCTACTAGCTGAT 58.673 40.000 0.00 0.00 0.00 2.90
1653 3548 4.469586 TGCTATTACCATCACACTGGAGAA 59.530 41.667 0.00 0.00 39.73 2.87
1655 3550 4.406648 TGCTATTACCATCACACTGGAG 57.593 45.455 0.00 0.00 39.73 3.86
1657 3557 6.712095 ACATTATGCTATTACCATCACACTGG 59.288 38.462 0.00 0.00 42.35 4.00
1668 3568 9.722056 CAGGACAAAGAAACATTATGCTATTAC 57.278 33.333 0.00 0.00 0.00 1.89
1672 3572 6.480763 TCCAGGACAAAGAAACATTATGCTA 58.519 36.000 0.00 0.00 0.00 3.49
1674 3574 5.643379 TCCAGGACAAAGAAACATTATGC 57.357 39.130 0.00 0.00 0.00 3.14
1679 3579 6.012113 TGATGAATCCAGGACAAAGAAACAT 58.988 36.000 0.00 0.00 0.00 2.71
1699 3599 2.620115 ACACAAACAGGCTGAAGTGATG 59.380 45.455 30.02 20.75 0.00 3.07
1746 3646 3.580319 GCTGGTGGGGTGGTTCCT 61.580 66.667 0.00 0.00 36.25 3.36
1747 3647 1.785353 TAAGCTGGTGGGGTGGTTCC 61.785 60.000 0.00 0.00 0.00 3.62
1787 3690 3.822735 CACTGAACATTCCCACTGACATT 59.177 43.478 0.00 0.00 0.00 2.71
1788 3691 3.181440 ACACTGAACATTCCCACTGACAT 60.181 43.478 0.00 0.00 0.00 3.06
1792 3695 2.849942 TCACACTGAACATTCCCACTG 58.150 47.619 0.00 0.00 0.00 3.66
1794 3697 3.058016 CACATCACACTGAACATTCCCAC 60.058 47.826 0.00 0.00 0.00 4.61
1811 3714 2.082231 ACTTGCAGCATGACTCACATC 58.918 47.619 14.99 0.00 39.69 3.06
1817 3720 3.900966 TCTGATACTTGCAGCATGACT 57.099 42.857 14.99 1.66 39.69 3.41
1819 3722 4.146745 ACATCTGATACTTGCAGCATGA 57.853 40.909 14.99 0.00 39.69 3.07
1839 3743 2.232941 TGACCGAGGGACATCAAACTAC 59.767 50.000 0.00 0.00 0.00 2.73
1853 3757 2.969443 ATTTTTGCGAACTGACCGAG 57.031 45.000 0.00 0.00 0.00 4.63
1856 3760 6.305638 GTCTATTCAATTTTTGCGAACTGACC 59.694 38.462 0.00 0.00 0.00 4.02
1860 3764 7.704472 TGTTTGTCTATTCAATTTTTGCGAACT 59.296 29.630 0.00 0.00 0.00 3.01
1861 3765 7.787480 GTGTTTGTCTATTCAATTTTTGCGAAC 59.213 33.333 0.00 0.00 0.00 3.95
1890 3794 9.265901 CTAAACCCTGAACATGAGATGTAATAG 57.734 37.037 0.00 0.00 44.07 1.73
1926 3831 4.720046 TGATTGGCTGTAACACAGGTAAA 58.280 39.130 8.31 0.00 46.01 2.01
1954 3859 8.444715 CAACATTGTTAATATGCATGTGCTTTT 58.555 29.630 10.16 0.00 42.66 2.27
2014 3923 2.009774 CACAGCTGGGTTATGCAGTAC 58.990 52.381 19.93 0.00 0.00 2.73
2015 3924 1.628340 ACACAGCTGGGTTATGCAGTA 59.372 47.619 18.08 0.00 0.00 2.74
2017 3926 1.538047 AACACAGCTGGGTTATGCAG 58.462 50.000 32.54 5.33 40.39 4.41
2057 3968 9.542462 TCAGCTGGTAATTCTACATATTGTTAC 57.458 33.333 15.13 0.00 0.00 2.50
2063 3974 8.432013 TCACATTCAGCTGGTAATTCTACATAT 58.568 33.333 15.13 0.00 0.00 1.78
2074 3985 3.253188 GCTTTGTTCACATTCAGCTGGTA 59.747 43.478 15.13 2.56 0.00 3.25
2093 4004 2.143925 GTGAAGCAACTAGGAACGCTT 58.856 47.619 9.17 9.17 46.90 4.68
2096 4007 4.545823 TTTTGTGAAGCAACTAGGAACG 57.454 40.909 0.00 0.00 36.72 3.95
2100 4011 8.723942 ACTAGATATTTTGTGAAGCAACTAGG 57.276 34.615 0.00 0.00 35.14 3.02
2110 4021 6.539173 ACCACACCAACTAGATATTTTGTGA 58.461 36.000 0.00 0.00 36.09 3.58
2131 4046 3.092301 CAGACAGACTGGACAGATACCA 58.908 50.000 7.51 0.00 42.39 3.25
2143 4058 6.471146 AGAAACTAAATCATGCAGACAGACT 58.529 36.000 0.00 0.00 0.00 3.24
2158 4075 9.671279 TCTGATTATGCTGATCAAGAAACTAAA 57.329 29.630 0.00 0.00 33.45 1.85
2174 4094 5.690464 ATGGAGGGACTATCTGATTATGC 57.310 43.478 0.00 0.00 41.55 3.14
2195 4115 0.463654 AATGTGCGGACGCCATGTAT 60.464 50.000 14.61 0.55 41.09 2.29
2205 4135 0.107643 TGAACACTGGAATGTGCGGA 59.892 50.000 0.00 0.00 41.30 5.54
2208 4138 3.715628 AAGTTGAACACTGGAATGTGC 57.284 42.857 0.00 0.00 41.30 4.57
2241 4171 9.337396 GGAACATAATATATGTTTCACTGGTCA 57.663 33.333 14.86 0.00 41.76 4.02
2242 4172 9.337396 TGGAACATAATATATGTTTCACTGGTC 57.663 33.333 16.55 3.99 41.23 4.02
2265 4195 2.713863 ACGGTACAGGTTTTTGTGGA 57.286 45.000 0.00 0.00 32.56 4.02
2303 4233 9.830975 GCCATAAAAATTATACCATTGGAAACT 57.169 29.630 10.37 0.00 0.00 2.66
2304 4234 9.606631 TGCCATAAAAATTATACCATTGGAAAC 57.393 29.630 10.37 0.00 0.00 2.78
2349 4279 6.603237 TTAGCATTGACCATCAATTAGACG 57.397 37.500 1.25 0.00 44.03 4.18
2367 4297 4.630111 CCCTTGCTTTTTGTGATTTAGCA 58.370 39.130 0.00 0.00 39.85 3.49
2369 4299 3.674753 CGCCCTTGCTTTTTGTGATTTAG 59.325 43.478 0.00 0.00 34.43 1.85
2384 4314 0.458889 CAATTCACATGGCGCCCTTG 60.459 55.000 26.77 23.52 35.21 3.61
2385 4315 1.892338 CAATTCACATGGCGCCCTT 59.108 52.632 26.77 8.91 0.00 3.95
2404 4334 2.781681 AATTGGTACTTCCTCCACCG 57.218 50.000 0.00 0.00 34.94 4.94
2446 4376 9.361315 GAACAATACACTACAAAAACTTGGTTT 57.639 29.630 0.00 0.00 37.34 3.27
2447 4377 8.524487 TGAACAATACACTACAAAAACTTGGTT 58.476 29.630 0.00 0.00 0.00 3.67
2460 4394 9.442062 TCTAAAGGGGATATGAACAATACACTA 57.558 33.333 0.00 0.00 0.00 2.74
2527 4461 4.214758 ACGGTTCTACAAACTACAATTGCC 59.785 41.667 5.05 0.00 0.00 4.52
2528 4462 5.352643 ACGGTTCTACAAACTACAATTGC 57.647 39.130 5.05 0.00 0.00 3.56
2529 4463 8.301730 TCTTACGGTTCTACAAACTACAATTG 57.698 34.615 3.24 3.24 0.00 2.32
2665 4763 8.147058 AGCAAGGAACTGTCATAATGTATAGAG 58.853 37.037 0.00 0.00 40.86 2.43
2684 4782 1.493861 AGCAGCAGAGATAGCAAGGA 58.506 50.000 0.00 0.00 0.00 3.36
2692 4790 8.389366 AGGGATTATTATTAAAGCAGCAGAGAT 58.611 33.333 0.00 0.00 0.00 2.75
2693 4791 7.663081 CAGGGATTATTATTAAAGCAGCAGAGA 59.337 37.037 0.00 0.00 0.00 3.10
2694 4792 7.663081 TCAGGGATTATTATTAAAGCAGCAGAG 59.337 37.037 0.00 0.00 0.00 3.35
2695 4793 7.517320 TCAGGGATTATTATTAAAGCAGCAGA 58.483 34.615 0.00 0.00 0.00 4.26
2712 4810 1.065126 GTGCACTAGGCTTCAGGGATT 60.065 52.381 10.32 0.00 45.15 3.01
2713 4811 0.543749 GTGCACTAGGCTTCAGGGAT 59.456 55.000 10.32 0.00 45.15 3.85
2714 4812 0.545309 AGTGCACTAGGCTTCAGGGA 60.545 55.000 20.16 0.00 45.15 4.20
2715 4813 0.392193 CAGTGCACTAGGCTTCAGGG 60.392 60.000 21.20 0.00 45.15 4.45
2716 4814 1.023513 GCAGTGCACTAGGCTTCAGG 61.024 60.000 21.20 4.76 45.15 3.86
2717 4815 0.036577 AGCAGTGCACTAGGCTTCAG 60.037 55.000 22.34 8.75 45.15 3.02
2718 4816 0.397941 AAGCAGTGCACTAGGCTTCA 59.602 50.000 29.17 0.00 42.52 3.02
2719 4817 0.801251 CAAGCAGTGCACTAGGCTTC 59.199 55.000 30.99 13.44 44.17 3.86
2720 4818 2.938354 CAAGCAGTGCACTAGGCTT 58.062 52.632 29.17 29.17 46.71 4.35
2721 4819 4.709840 CAAGCAGTGCACTAGGCT 57.290 55.556 22.34 22.34 45.15 4.58
2736 4834 3.334583 AATACGGAAGAAGCTCAGCAA 57.665 42.857 0.00 0.00 0.00 3.91
2738 4836 3.782046 TGTAATACGGAAGAAGCTCAGC 58.218 45.455 0.00 0.00 0.00 4.26
2739 4837 5.038033 GTCTGTAATACGGAAGAAGCTCAG 58.962 45.833 3.13 0.00 34.87 3.35
2740 4838 4.142227 GGTCTGTAATACGGAAGAAGCTCA 60.142 45.833 3.13 0.00 34.87 4.26
2741 4839 4.098196 AGGTCTGTAATACGGAAGAAGCTC 59.902 45.833 3.13 0.00 34.87 4.09
2742 4840 4.024670 AGGTCTGTAATACGGAAGAAGCT 58.975 43.478 3.13 0.00 34.87 3.74
2744 4842 5.508872 CGTAGGTCTGTAATACGGAAGAAG 58.491 45.833 3.13 0.00 38.82 2.85
2745 4843 5.490139 CGTAGGTCTGTAATACGGAAGAA 57.510 43.478 3.13 0.00 38.82 2.52
3187 5285 7.343316 AGCTCAGTCCAATAGTCAATACTACTT 59.657 37.037 0.00 0.00 40.98 2.24
3188 5286 6.836527 AGCTCAGTCCAATAGTCAATACTACT 59.163 38.462 0.00 0.00 40.98 2.57
3194 5495 3.199508 AGCAGCTCAGTCCAATAGTCAAT 59.800 43.478 0.00 0.00 0.00 2.57
3197 5498 2.977772 AGCAGCTCAGTCCAATAGTC 57.022 50.000 0.00 0.00 0.00 2.59
3198 5499 5.365021 AATAAGCAGCTCAGTCCAATAGT 57.635 39.130 0.00 0.00 0.00 2.12
3200 5501 5.586243 GTCAAATAAGCAGCTCAGTCCAATA 59.414 40.000 0.00 0.00 0.00 1.90
3201 5502 4.397417 GTCAAATAAGCAGCTCAGTCCAAT 59.603 41.667 0.00 0.00 0.00 3.16
3206 5507 3.743521 TGTGTCAAATAAGCAGCTCAGT 58.256 40.909 0.00 0.00 0.00 3.41
3209 5510 6.428385 AGTAATGTGTCAAATAAGCAGCTC 57.572 37.500 0.00 0.00 0.00 4.09
3210 5511 7.390440 TGTTAGTAATGTGTCAAATAAGCAGCT 59.610 33.333 0.00 0.00 0.00 4.24
3212 5513 9.546909 CTTGTTAGTAATGTGTCAAATAAGCAG 57.453 33.333 0.00 0.00 0.00 4.24
3217 5518 9.990360 TGACTCTTGTTAGTAATGTGTCAAATA 57.010 29.630 11.99 0.00 0.00 1.40
3218 5519 8.902540 TGACTCTTGTTAGTAATGTGTCAAAT 57.097 30.769 11.99 0.00 0.00 2.32
3221 5522 7.666623 TCATGACTCTTGTTAGTAATGTGTCA 58.333 34.615 14.58 14.58 38.84 3.58
3222 5523 8.709386 ATCATGACTCTTGTTAGTAATGTGTC 57.291 34.615 0.00 0.00 38.84 3.67
3231 5532 9.212641 TCAGAAGAAAATCATGACTCTTGTTAG 57.787 33.333 17.07 6.68 0.00 2.34
3232 5533 9.559732 TTCAGAAGAAAATCATGACTCTTGTTA 57.440 29.630 17.07 6.26 0.00 2.41
3234 5535 7.308469 GCTTCAGAAGAAAATCATGACTCTTGT 60.308 37.037 14.86 12.26 32.35 3.16
3235 5536 7.022384 GCTTCAGAAGAAAATCATGACTCTTG 58.978 38.462 14.86 8.24 32.35 3.02
3236 5537 6.713903 TGCTTCAGAAGAAAATCATGACTCTT 59.286 34.615 14.86 13.64 32.35 2.85
3237 5538 6.236409 TGCTTCAGAAGAAAATCATGACTCT 58.764 36.000 14.86 0.00 32.35 3.24
3238 5539 6.492007 TGCTTCAGAAGAAAATCATGACTC 57.508 37.500 14.86 0.00 32.35 3.36
3239 5540 6.625300 GCATGCTTCAGAAGAAAATCATGACT 60.625 38.462 22.33 0.00 37.76 3.41
3240 5541 5.515626 GCATGCTTCAGAAGAAAATCATGAC 59.484 40.000 22.33 14.01 37.76 3.06
3243 5544 5.408356 GTGCATGCTTCAGAAGAAAATCAT 58.592 37.500 20.33 4.52 32.35 2.45
3244 5545 4.321452 GGTGCATGCTTCAGAAGAAAATCA 60.321 41.667 20.33 2.17 32.35 2.57
3245 5546 4.082354 AGGTGCATGCTTCAGAAGAAAATC 60.082 41.667 20.33 0.00 32.35 2.17
3246 5547 3.830755 AGGTGCATGCTTCAGAAGAAAAT 59.169 39.130 20.33 1.27 32.35 1.82
3247 5548 3.005050 CAGGTGCATGCTTCAGAAGAAAA 59.995 43.478 20.33 0.00 32.35 2.29
3248 5549 2.555325 CAGGTGCATGCTTCAGAAGAAA 59.445 45.455 20.33 1.33 32.35 2.52
3249 5550 2.156917 CAGGTGCATGCTTCAGAAGAA 58.843 47.619 20.33 3.30 0.00 2.52
3250 5551 1.817357 CAGGTGCATGCTTCAGAAGA 58.183 50.000 20.33 0.00 0.00 2.87
3251 5552 0.170561 GCAGGTGCATGCTTCAGAAG 59.829 55.000 20.33 5.72 43.07 2.85
3252 5553 1.246056 GGCAGGTGCATGCTTCAGAA 61.246 55.000 20.33 0.00 45.75 3.02
3254 5555 1.529152 TTGGCAGGTGCATGCTTCAG 61.529 55.000 20.33 8.87 45.75 3.02
3255 5556 1.114119 TTTGGCAGGTGCATGCTTCA 61.114 50.000 20.33 5.29 45.75 3.02
3256 5557 0.033781 TTTTGGCAGGTGCATGCTTC 59.966 50.000 20.33 11.78 45.75 3.86
3257 5558 0.688487 ATTTTGGCAGGTGCATGCTT 59.312 45.000 20.33 1.35 45.75 3.91
3258 5559 0.036765 CATTTTGGCAGGTGCATGCT 60.037 50.000 20.33 0.00 45.75 3.79
3259 5560 0.320946 ACATTTTGGCAGGTGCATGC 60.321 50.000 11.82 11.82 45.74 4.06
3260 5561 1.673626 GGACATTTTGGCAGGTGCATG 60.674 52.381 4.01 1.63 44.36 4.06
3261 5562 0.609662 GGACATTTTGGCAGGTGCAT 59.390 50.000 4.01 0.00 44.36 3.96
3262 5563 0.469705 AGGACATTTTGGCAGGTGCA 60.470 50.000 4.01 0.00 44.36 4.57
3263 5564 1.544724 TAGGACATTTTGGCAGGTGC 58.455 50.000 0.00 0.00 41.14 5.01
3264 5565 4.019174 AGAATAGGACATTTTGGCAGGTG 58.981 43.478 0.00 0.00 0.00 4.00
3265 5566 4.322057 AGAATAGGACATTTTGGCAGGT 57.678 40.909 0.00 0.00 0.00 4.00
3266 5567 4.463891 ACAAGAATAGGACATTTTGGCAGG 59.536 41.667 0.00 0.00 0.00 4.85
3267 5568 5.649782 ACAAGAATAGGACATTTTGGCAG 57.350 39.130 0.00 0.00 0.00 4.85
3268 5569 6.418057 AAACAAGAATAGGACATTTTGGCA 57.582 33.333 0.00 0.00 0.00 4.92
3269 5570 7.728847 AAAAACAAGAATAGGACATTTTGGC 57.271 32.000 0.00 0.00 0.00 4.52
3303 5604 9.823647 CTACCATCATAACAAGAGTAAGACATT 57.176 33.333 0.00 0.00 0.00 2.71
3304 5605 8.424918 CCTACCATCATAACAAGAGTAAGACAT 58.575 37.037 0.00 0.00 0.00 3.06
3305 5606 7.399191 ACCTACCATCATAACAAGAGTAAGACA 59.601 37.037 0.00 0.00 0.00 3.41
3306 5607 7.783042 ACCTACCATCATAACAAGAGTAAGAC 58.217 38.462 0.00 0.00 0.00 3.01
3307 5608 7.973048 ACCTACCATCATAACAAGAGTAAGA 57.027 36.000 0.00 0.00 0.00 2.10
3308 5609 7.868415 GCTACCTACCATCATAACAAGAGTAAG 59.132 40.741 0.00 0.00 0.00 2.34
3309 5610 7.343574 TGCTACCTACCATCATAACAAGAGTAA 59.656 37.037 0.00 0.00 0.00 2.24
3310 5611 6.837048 TGCTACCTACCATCATAACAAGAGTA 59.163 38.462 0.00 0.00 0.00 2.59
3311 5612 5.661312 TGCTACCTACCATCATAACAAGAGT 59.339 40.000 0.00 0.00 0.00 3.24
3312 5613 6.040955 TCTGCTACCTACCATCATAACAAGAG 59.959 42.308 0.00 0.00 0.00 2.85
3313 5614 5.897250 TCTGCTACCTACCATCATAACAAGA 59.103 40.000 0.00 0.00 0.00 3.02
3314 5615 6.040955 TCTCTGCTACCTACCATCATAACAAG 59.959 42.308 0.00 0.00 0.00 3.16
3315 5616 5.897250 TCTCTGCTACCTACCATCATAACAA 59.103 40.000 0.00 0.00 0.00 2.83
3316 5617 5.302059 GTCTCTGCTACCTACCATCATAACA 59.698 44.000 0.00 0.00 0.00 2.41
3317 5618 5.302059 TGTCTCTGCTACCTACCATCATAAC 59.698 44.000 0.00 0.00 0.00 1.89
3318 5619 5.302059 GTGTCTCTGCTACCTACCATCATAA 59.698 44.000 0.00 0.00 0.00 1.90
3319 5620 4.827835 GTGTCTCTGCTACCTACCATCATA 59.172 45.833 0.00 0.00 0.00 2.15
3320 5621 3.639094 GTGTCTCTGCTACCTACCATCAT 59.361 47.826 0.00 0.00 0.00 2.45
3321 5622 3.024547 GTGTCTCTGCTACCTACCATCA 58.975 50.000 0.00 0.00 0.00 3.07
3322 5623 3.024547 TGTGTCTCTGCTACCTACCATC 58.975 50.000 0.00 0.00 0.00 3.51
3323 5624 3.101643 TGTGTCTCTGCTACCTACCAT 57.898 47.619 0.00 0.00 0.00 3.55
3324 5625 2.597578 TGTGTCTCTGCTACCTACCA 57.402 50.000 0.00 0.00 0.00 3.25
3325 5626 3.447586 TGAATGTGTCTCTGCTACCTACC 59.552 47.826 0.00 0.00 0.00 3.18
3326 5627 4.082190 TGTGAATGTGTCTCTGCTACCTAC 60.082 45.833 0.00 0.00 0.00 3.18
3327 5628 4.082190 GTGTGAATGTGTCTCTGCTACCTA 60.082 45.833 0.00 0.00 0.00 3.08
3328 5629 2.899900 TGTGAATGTGTCTCTGCTACCT 59.100 45.455 0.00 0.00 0.00 3.08
3329 5630 2.996621 GTGTGAATGTGTCTCTGCTACC 59.003 50.000 0.00 0.00 0.00 3.18
3330 5631 3.919216 AGTGTGAATGTGTCTCTGCTAC 58.081 45.455 0.00 0.00 0.00 3.58
3331 5632 4.607293 AAGTGTGAATGTGTCTCTGCTA 57.393 40.909 0.00 0.00 0.00 3.49
3332 5633 3.482156 AAGTGTGAATGTGTCTCTGCT 57.518 42.857 0.00 0.00 0.00 4.24
3333 5634 3.313526 ACAAAGTGTGAATGTGTCTCTGC 59.686 43.478 0.00 0.00 0.00 4.26
3334 5635 5.490139 AACAAAGTGTGAATGTGTCTCTG 57.510 39.130 0.00 0.00 0.00 3.35
3335 5636 9.155975 GATATAACAAAGTGTGAATGTGTCTCT 57.844 33.333 0.00 0.00 0.00 3.10
3336 5637 9.155975 AGATATAACAAAGTGTGAATGTGTCTC 57.844 33.333 0.00 0.00 0.00 3.36
3337 5638 8.939929 CAGATATAACAAAGTGTGAATGTGTCT 58.060 33.333 0.00 0.00 0.00 3.41
3338 5639 8.721478 ACAGATATAACAAAGTGTGAATGTGTC 58.279 33.333 0.00 0.00 0.00 3.67
3339 5640 8.621532 ACAGATATAACAAAGTGTGAATGTGT 57.378 30.769 0.00 0.00 0.00 3.72
3340 5641 9.333497 CAACAGATATAACAAAGTGTGAATGTG 57.667 33.333 0.00 0.00 0.00 3.21
3341 5642 9.066892 ACAACAGATATAACAAAGTGTGAATGT 57.933 29.630 0.00 0.00 0.00 2.71
3342 5643 9.546909 GACAACAGATATAACAAAGTGTGAATG 57.453 33.333 0.00 0.00 0.00 2.67
3343 5644 9.507329 AGACAACAGATATAACAAAGTGTGAAT 57.493 29.630 0.00 0.00 0.00 2.57
3344 5645 8.902540 AGACAACAGATATAACAAAGTGTGAA 57.097 30.769 0.00 0.00 0.00 3.18
3345 5646 8.902540 AAGACAACAGATATAACAAAGTGTGA 57.097 30.769 0.00 0.00 0.00 3.58
3347 5648 9.998106 AGTAAGACAACAGATATAACAAAGTGT 57.002 29.630 0.00 0.00 0.00 3.55
3380 5681 7.704578 AAGATAACTTAGACAGCACAGTCTA 57.295 36.000 8.94 8.94 46.52 2.59
3382 5683 6.159988 ACAAGATAACTTAGACAGCACAGTC 58.840 40.000 0.00 0.00 35.05 3.51
3383 5684 6.102897 ACAAGATAACTTAGACAGCACAGT 57.897 37.500 0.00 0.00 34.70 3.55
3384 5685 8.029522 TCTAACAAGATAACTTAGACAGCACAG 58.970 37.037 0.00 0.00 34.70 3.66
3385 5686 7.892609 TCTAACAAGATAACTTAGACAGCACA 58.107 34.615 0.00 0.00 34.70 4.57
3386 5687 8.812329 CATCTAACAAGATAACTTAGACAGCAC 58.188 37.037 0.00 0.00 34.70 4.40
3387 5688 7.492669 GCATCTAACAAGATAACTTAGACAGCA 59.507 37.037 0.00 0.00 34.70 4.41
3388 5689 7.708752 AGCATCTAACAAGATAACTTAGACAGC 59.291 37.037 0.00 0.00 34.70 4.40
3389 5690 9.029243 CAGCATCTAACAAGATAACTTAGACAG 57.971 37.037 0.00 0.00 34.70 3.51
3390 5691 7.492669 GCAGCATCTAACAAGATAACTTAGACA 59.507 37.037 0.00 0.00 34.70 3.41
3391 5692 7.042389 GGCAGCATCTAACAAGATAACTTAGAC 60.042 40.741 0.00 0.00 34.70 2.59
3392 5693 6.986817 GGCAGCATCTAACAAGATAACTTAGA 59.013 38.462 0.00 0.00 34.70 2.10
3393 5694 6.989169 AGGCAGCATCTAACAAGATAACTTAG 59.011 38.462 0.00 0.00 34.70 2.18
3394 5695 6.889198 AGGCAGCATCTAACAAGATAACTTA 58.111 36.000 0.00 0.00 34.70 2.24
3395 5696 5.749462 AGGCAGCATCTAACAAGATAACTT 58.251 37.500 0.00 0.00 36.73 2.66
3396 5697 5.365021 AGGCAGCATCTAACAAGATAACT 57.635 39.130 0.00 0.00 0.00 2.24
3397 5698 6.049149 TGTAGGCAGCATCTAACAAGATAAC 58.951 40.000 0.00 0.00 0.00 1.89
3398 5699 6.233905 TGTAGGCAGCATCTAACAAGATAA 57.766 37.500 0.00 0.00 0.00 1.75
3399 5700 5.869649 TGTAGGCAGCATCTAACAAGATA 57.130 39.130 0.00 0.00 0.00 1.98
3400 5701 4.760530 TGTAGGCAGCATCTAACAAGAT 57.239 40.909 0.00 0.00 0.00 2.40
3401 5702 4.020218 ACTTGTAGGCAGCATCTAACAAGA 60.020 41.667 22.09 0.00 37.39 3.02
3402 5703 4.093998 CACTTGTAGGCAGCATCTAACAAG 59.906 45.833 16.18 16.18 39.16 3.16
3403 5704 4.002982 CACTTGTAGGCAGCATCTAACAA 58.997 43.478 0.00 0.00 0.00 2.83
3404 5705 3.007940 ACACTTGTAGGCAGCATCTAACA 59.992 43.478 0.00 0.00 0.00 2.41
3405 5706 3.600388 ACACTTGTAGGCAGCATCTAAC 58.400 45.455 0.00 0.00 0.00 2.34
3406 5707 3.981071 ACACTTGTAGGCAGCATCTAA 57.019 42.857 0.00 0.00 0.00 2.10
3407 5708 3.981071 AACACTTGTAGGCAGCATCTA 57.019 42.857 0.00 0.00 0.00 1.98
3408 5709 2.867109 AACACTTGTAGGCAGCATCT 57.133 45.000 0.00 0.00 0.00 2.90
3409 5710 4.731773 GCAATAACACTTGTAGGCAGCATC 60.732 45.833 0.00 0.00 0.00 3.91
3410 5711 3.129287 GCAATAACACTTGTAGGCAGCAT 59.871 43.478 0.00 0.00 0.00 3.79
3411 5712 2.487762 GCAATAACACTTGTAGGCAGCA 59.512 45.455 0.00 0.00 0.00 4.41
3412 5713 2.749621 AGCAATAACACTTGTAGGCAGC 59.250 45.455 0.00 0.00 0.00 5.25
3413 5714 4.697352 AGAAGCAATAACACTTGTAGGCAG 59.303 41.667 0.00 0.00 0.00 4.85
3414 5715 4.651778 AGAAGCAATAACACTTGTAGGCA 58.348 39.130 0.00 0.00 0.00 4.75
3415 5716 5.393962 CAAGAAGCAATAACACTTGTAGGC 58.606 41.667 0.00 0.00 34.96 3.93
3416 5717 5.393962 GCAAGAAGCAATAACACTTGTAGG 58.606 41.667 0.00 0.00 44.79 3.18
3431 5732 0.590732 CGCGAATGATGGCAAGAAGC 60.591 55.000 0.00 0.00 44.65 3.86
3432 5733 1.009078 TCGCGAATGATGGCAAGAAG 58.991 50.000 6.20 0.00 0.00 2.85
3433 5734 1.447945 TTCGCGAATGATGGCAAGAA 58.552 45.000 19.38 0.00 0.00 2.52
3434 5735 1.667236 ATTCGCGAATGATGGCAAGA 58.333 45.000 32.07 1.85 0.00 3.02
3444 5745 7.118245 TGCTATTGATATTCTTCATTCGCGAAT 59.882 33.333 27.94 27.94 0.00 3.34
3445 5746 6.423604 TGCTATTGATATTCTTCATTCGCGAA 59.576 34.615 25.66 25.66 0.00 4.70
3446 5747 5.925969 TGCTATTGATATTCTTCATTCGCGA 59.074 36.000 3.71 3.71 0.00 5.87
3447 5748 6.156932 TGCTATTGATATTCTTCATTCGCG 57.843 37.500 0.00 0.00 0.00 5.87
3448 5749 7.745972 TGATGCTATTGATATTCTTCATTCGC 58.254 34.615 0.00 0.00 0.00 4.70
3453 5754 9.187996 TGGTTTTGATGCTATTGATATTCTTCA 57.812 29.630 0.00 0.00 0.00 3.02
3454 5755 9.674824 CTGGTTTTGATGCTATTGATATTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
3455 5756 9.412460 TCTGGTTTTGATGCTATTGATATTCTT 57.588 29.630 0.00 0.00 0.00 2.52
3456 5757 8.985315 TCTGGTTTTGATGCTATTGATATTCT 57.015 30.769 0.00 0.00 0.00 2.40
3457 5758 9.674824 CTTCTGGTTTTGATGCTATTGATATTC 57.325 33.333 0.00 0.00 0.00 1.75
3458 5759 9.412460 TCTTCTGGTTTTGATGCTATTGATATT 57.588 29.630 0.00 0.00 0.00 1.28
3459 5760 8.985315 TCTTCTGGTTTTGATGCTATTGATAT 57.015 30.769 0.00 0.00 0.00 1.63
3460 5761 8.267183 TCTCTTCTGGTTTTGATGCTATTGATA 58.733 33.333 0.00 0.00 0.00 2.15
3461 5762 7.114754 TCTCTTCTGGTTTTGATGCTATTGAT 58.885 34.615 0.00 0.00 0.00 2.57
3465 5766 9.638176 AAATATCTCTTCTGGTTTTGATGCTAT 57.362 29.630 0.00 0.00 0.00 2.97
3488 5789 9.995003 TTTGCAAGTGTATGGAAATAAAGAAAT 57.005 25.926 0.00 0.00 35.98 2.17
3519 5820 0.454196 AGTTCGCAACCGCAGTTTTT 59.546 45.000 0.00 0.00 38.40 1.94
3520 5821 0.028902 GAGTTCGCAACCGCAGTTTT 59.971 50.000 0.00 0.00 38.40 2.43
3523 5844 2.665185 GGAGTTCGCAACCGCAGT 60.665 61.111 0.00 0.00 38.40 4.40
3526 5847 2.746277 ATGGGAGTTCGCAACCGC 60.746 61.111 2.89 0.00 42.15 5.68
3534 5855 3.202151 TCCCTTAATGACCATGGGAGTTC 59.798 47.826 18.09 4.79 41.57 3.01
3540 5861 4.443978 AGTGATCCCTTAATGACCATGG 57.556 45.455 11.19 11.19 0.00 3.66
3601 5931 9.658799 CTCCTGAAGAATCAAACAGTTATAGAA 57.341 33.333 0.00 0.00 34.49 2.10
3606 5936 6.710744 GGTTCTCCTGAAGAATCAAACAGTTA 59.289 38.462 0.00 0.00 45.57 2.24
3610 5940 4.141274 TGGGTTCTCCTGAAGAATCAAACA 60.141 41.667 0.94 0.00 45.51 2.83
3739 6069 8.612619 ACAATTCGTTTAGTATAGAAGCAATGG 58.387 33.333 0.00 0.00 0.00 3.16
3959 6289 1.134670 ACCGAGGATAACAAGCTGAGC 60.135 52.381 0.00 0.00 0.00 4.26
4022 6353 2.223226 TGACAATACAAATCATGGCGCG 60.223 45.455 0.00 0.00 0.00 6.86
4050 6381 5.491982 AGTGAAACCTTATTCCTAGCACAG 58.508 41.667 0.00 0.00 37.80 3.66
4059 6390 4.517832 ACGGGAACAAGTGAAACCTTATTC 59.482 41.667 0.00 0.00 37.80 1.75
4083 6414 1.002250 CAGACGACACGTTTCCCTCG 61.002 60.000 0.00 0.00 41.37 4.63
4126 6458 2.432146 TCCGATCTGGAACAAGGAGATG 59.568 50.000 4.13 0.00 46.38 2.90
4148 6480 8.623903 CCAGTGATTTGTGCATACATAGTTAAT 58.376 33.333 0.00 0.00 36.53 1.40
4230 6563 7.744678 ATCTACTTAAGGGCCTAAAAGTACA 57.255 36.000 26.04 20.43 34.23 2.90
4245 6579 9.878667 TCGTCATCAATACCAAAATCTACTTAA 57.121 29.630 0.00 0.00 0.00 1.85
4293 6627 7.172019 GGACTAACCTGATTTCAAACTTAACGA 59.828 37.037 0.00 0.00 35.41 3.85
4312 6648 1.275573 ACCTTCGCTCTTGGGACTAAC 59.724 52.381 0.00 0.00 34.79 2.34
4342 6678 3.628942 TGAGCATACAAGCAAGCAATAGG 59.371 43.478 0.00 0.00 36.85 2.57
4379 6715 9.998106 TTCTCTAAATATACAACTAGGGATTGC 57.002 33.333 0.00 0.00 0.00 3.56
4401 6737 4.210746 GGGACGCGGATAAATTAAGTTCTC 59.789 45.833 12.47 0.00 0.00 2.87
4417 6753 3.750639 TTTAGCAAATTTAGGGACGCG 57.249 42.857 3.53 3.53 0.00 6.01
4482 6819 2.633481 GGAGGGATGTAGGCGACTAAAT 59.367 50.000 0.00 0.00 46.54 1.40
4497 6834 2.402564 GATGTCAAGAGGATGGAGGGA 58.597 52.381 0.00 0.00 0.00 4.20
4706 7044 9.193133 GCATCATCTTATTCTTTCATTTCATGG 57.807 33.333 0.00 0.00 0.00 3.66
4707 7045 9.744468 TGCATCATCTTATTCTTTCATTTCATG 57.256 29.630 0.00 0.00 0.00 3.07
4710 7048 9.577110 TGTTGCATCATCTTATTCTTTCATTTC 57.423 29.630 0.00 0.00 0.00 2.17
4798 7136 2.158769 AGAATATCGCAGGCACATTCCA 60.159 45.455 0.00 0.00 0.00 3.53
4809 7147 4.038042 ACATCTTCTCCGAAGAATATCGCA 59.962 41.667 10.02 0.00 40.68 5.10
4814 7152 5.888724 AGAGTGACATCTTCTCCGAAGAATA 59.111 40.000 10.02 0.00 40.68 1.75
4938 7276 2.586635 TGCGTTCCGTTGAAGCGT 60.587 55.556 0.00 0.00 31.42 5.07
4946 7284 2.431942 GGATCGTGTGCGTTCCGT 60.432 61.111 2.06 0.00 44.04 4.69
4958 7296 0.315568 GGACTCAATCGGGAGGATCG 59.684 60.000 0.00 0.00 39.27 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.