Multiple sequence alignment - TraesCS5A01G445900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G445900 chr5A 100.000 8058 0 0 1 8058 626023226 626031283 0.000000e+00 14881.0
1 TraesCS5A01G445900 chr5A 84.931 2243 221 60 5187 7383 625707933 625710104 0.000000e+00 2161.0
2 TraesCS5A01G445900 chr5A 87.426 1018 104 14 1736 2744 599484692 599483690 0.000000e+00 1149.0
3 TraesCS5A01G445900 chr5A 85.542 581 48 20 5187 5748 599473900 599473337 7.010000e-160 575.0
4 TraesCS5A01G445900 chr5A 89.542 459 38 5 4073 4530 599475620 599475171 2.520000e-159 573.0
5 TraesCS5A01G445900 chr5A 84.787 539 51 15 1184 1714 599485199 599484684 5.580000e-141 512.0
6 TraesCS5A01G445900 chr5A 80.670 657 78 18 1069 1707 625703389 625704014 1.580000e-126 464.0
7 TraesCS5A01G445900 chr5A 86.667 435 38 10 4096 4530 625706299 625706713 1.580000e-126 464.0
8 TraesCS5A01G445900 chr5A 80.267 674 66 25 2758 3366 625704522 625705193 5.740000e-121 446.0
9 TraesCS5A01G445900 chr5A 81.342 477 48 11 6359 6811 599473053 599472594 4.630000e-92 350.0
10 TraesCS5A01G445900 chr5A 85.714 315 29 13 4868 5179 599474376 599474075 1.300000e-82 318.0
11 TraesCS5A01G445900 chr5A 92.344 209 15 1 3852 4060 625705184 625705391 6.110000e-76 296.0
12 TraesCS5A01G445900 chr5A 89.256 242 19 6 4868 5103 625707521 625707761 6.110000e-76 296.0
13 TraesCS5A01G445900 chr5A 84.753 223 19 4 3852 4060 599483315 599483094 8.190000e-50 209.0
14 TraesCS5A01G445900 chr5A 83.333 132 10 6 6438 6568 577925318 577925198 2.380000e-20 111.0
15 TraesCS5A01G445900 chr5B 90.494 2188 144 29 5187 7353 622968666 622966522 0.000000e+00 2830.0
16 TraesCS5A01G445900 chr5B 91.657 1810 104 20 2758 4530 622971697 622969898 0.000000e+00 2462.0
17 TraesCS5A01G445900 chr5B 93.254 1601 69 10 2966 4530 633309666 633311263 0.000000e+00 2322.0
18 TraesCS5A01G445900 chr5B 88.242 1871 149 40 927 2762 633307536 633309370 0.000000e+00 2170.0
19 TraesCS5A01G445900 chr5B 88.723 1809 135 29 994 2762 622973536 622971757 0.000000e+00 2146.0
20 TraesCS5A01G445900 chr5B 85.669 635 60 18 1069 1689 633156370 633156987 2.450000e-179 640.0
21 TraesCS5A01G445900 chr5B 80.149 937 113 25 6359 7263 629959485 629958590 4.100000e-177 632.0
22 TraesCS5A01G445900 chr5B 78.571 1106 128 42 6359 7409 633161087 633162138 5.310000e-176 628.0
23 TraesCS5A01G445900 chr5B 92.875 407 18 4 120 526 633304211 633304606 1.510000e-161 580.0
24 TraesCS5A01G445900 chr5B 91.335 427 32 5 6884 7306 625216684 625216259 5.420000e-161 579.0
25 TraesCS5A01G445900 chr5B 91.335 427 32 5 6884 7306 628815775 628815350 5.420000e-161 579.0
26 TraesCS5A01G445900 chr5B 84.299 535 58 8 170 698 622975311 622974797 4.340000e-137 499.0
27 TraesCS5A01G445900 chr5B 93.155 336 22 1 4526 4861 633311663 633311997 7.270000e-135 492.0
28 TraesCS5A01G445900 chr5B 81.732 635 60 23 1069 1689 629963305 629962713 5.660000e-131 479.0
29 TraesCS5A01G445900 chr5B 92.038 314 22 3 4068 4380 633158436 633158747 9.600000e-119 438.0
30 TraesCS5A01G445900 chr5B 80.605 562 77 14 5187 5741 633160281 633160817 9.740000e-109 405.0
31 TraesCS5A01G445900 chr5B 78.757 692 50 50 7435 8058 622966354 622965692 2.750000e-99 374.0
32 TraesCS5A01G445900 chr5B 87.021 339 24 5 4868 5187 622969156 622968819 1.650000e-96 364.0
33 TraesCS5A01G445900 chr5B 87.580 314 35 3 4868 5179 633159796 633160107 2.140000e-95 361.0
34 TraesCS5A01G445900 chr5B 84.741 367 39 8 2402 2752 629962609 629962244 1.290000e-92 351.0
35 TraesCS5A01G445900 chr5B 84.658 365 38 10 2849 3198 629962226 629961865 1.660000e-91 348.0
36 TraesCS5A01G445900 chr5B 86.478 318 35 5 4868 5183 629960786 629960475 7.740000e-90 342.0
37 TraesCS5A01G445900 chr5B 78.622 566 79 18 5187 5747 629960304 629959776 3.600000e-88 337.0
38 TraesCS5A01G445900 chr5B 80.116 518 42 31 7428 7918 628815243 628814760 6.030000e-86 329.0
39 TraesCS5A01G445900 chr5B 83.651 367 43 8 2402 2752 633157091 633157456 6.030000e-86 329.0
40 TraesCS5A01G445900 chr5B 93.578 218 11 1 2758 2972 633309419 633309636 1.010000e-83 322.0
41 TraesCS5A01G445900 chr5B 84.123 359 25 13 4529 4867 622969534 622969188 1.300000e-82 318.0
42 TraesCS5A01G445900 chr5B 91.189 227 16 3 2981 3206 633157596 633157819 1.020000e-78 305.0
43 TraesCS5A01G445900 chr5B 85.099 302 13 12 7435 7734 633312328 633312599 6.160000e-71 279.0
44 TraesCS5A01G445900 chr5B 80.757 317 23 17 4868 5181 633312037 633312318 6.330000e-51 213.0
45 TraesCS5A01G445900 chr5B 90.441 136 7 4 7603 7736 629955804 629955673 2.990000e-39 174.0
46 TraesCS5A01G445900 chr5B 88.462 78 6 2 7853 7930 629956027 629955953 3.100000e-14 91.6
47 TraesCS5A01G445900 chr5B 87.013 77 7 3 7853 7929 633164550 633164623 5.180000e-12 84.2
48 TraesCS5A01G445900 chr5B 85.542 83 4 4 7554 7633 633162391 633162468 6.700000e-11 80.5
49 TraesCS5A01G445900 chr5B 86.792 53 7 0 29 81 520850663 520850611 8.730000e-05 60.2
50 TraesCS5A01G445900 chr5D 92.558 1599 70 16 2981 4530 501345277 501343679 0.000000e+00 2248.0
51 TraesCS5A01G445900 chr5D 87.571 1939 155 43 5506 7405 508276808 508274917 0.000000e+00 2167.0
52 TraesCS5A01G445900 chr5D 92.720 1511 89 15 4868 6363 501342902 501341398 0.000000e+00 2161.0
53 TraesCS5A01G445900 chr5D 84.572 1614 115 46 6359 7929 501497370 501495848 0.000000e+00 1478.0
54 TraesCS5A01G445900 chr5D 90.695 1064 79 14 6360 7408 501340167 501339109 0.000000e+00 1399.0
55 TraesCS5A01G445900 chr5D 85.385 1129 106 26 1661 2752 296918813 296919919 0.000000e+00 1116.0
56 TraesCS5A01G445900 chr5D 86.377 1035 95 20 1738 2744 501502859 501501843 0.000000e+00 1088.0
57 TraesCS5A01G445900 chr5D 89.282 877 69 16 1022 1881 508287612 508286744 0.000000e+00 1075.0
58 TraesCS5A01G445900 chr5D 87.224 861 74 19 1911 2762 508286747 508285914 0.000000e+00 948.0
59 TraesCS5A01G445900 chr5D 88.433 804 67 18 1001 1793 501346761 501345973 0.000000e+00 946.0
60 TraesCS5A01G445900 chr5D 85.562 658 65 19 1069 1714 501503492 501502853 0.000000e+00 662.0
61 TraesCS5A01G445900 chr5D 94.477 344 16 2 4526 4867 501343276 501342934 1.990000e-145 527.0
62 TraesCS5A01G445900 chr5D 83.448 580 52 26 5187 5741 501498528 501497968 4.340000e-137 499.0
63 TraesCS5A01G445900 chr5D 87.427 342 38 4 1022 1363 508288988 508288652 9.810000e-104 388.0
64 TraesCS5A01G445900 chr5D 93.103 261 17 1 2264 2524 501345965 501345706 1.640000e-101 381.0
65 TraesCS5A01G445900 chr5D 87.580 314 25 9 4868 5179 296924565 296924866 1.290000e-92 351.0
66 TraesCS5A01G445900 chr5D 91.213 239 12 6 5187 5418 296925041 296925277 4.690000e-82 316.0
67 TraesCS5A01G445900 chr5D 93.119 218 12 1 2758 2972 501345536 501345319 4.690000e-82 316.0
68 TraesCS5A01G445900 chr5D 78.918 536 58 21 86 614 501348574 501348087 6.070000e-81 313.0
69 TraesCS5A01G445900 chr5D 80.290 482 37 22 7463 7929 501338966 501338528 2.180000e-80 311.0
70 TraesCS5A01G445900 chr5D 82.051 312 28 8 3081 3366 501501768 501501459 2.910000e-59 241.0
71 TraesCS5A01G445900 chr5D 87.097 217 19 4 3852 4060 296921283 296921498 3.760000e-58 237.0
72 TraesCS5A01G445900 chr5D 87.037 216 20 2 3852 4060 501501468 501501254 3.760000e-58 237.0
73 TraesCS5A01G445900 chr5D 83.404 235 19 9 4529 4746 508277042 508276811 4.930000e-47 200.0
74 TraesCS5A01G445900 chr5D 93.023 129 9 0 4868 4996 501498984 501498856 1.070000e-43 189.0
75 TraesCS5A01G445900 chr5D 81.111 270 16 14 3097 3335 296920146 296920411 4.970000e-42 183.0
76 TraesCS5A01G445900 chr5D 84.302 172 20 4 5021 5187 501498864 501498695 2.330000e-35 161.0
77 TraesCS5A01G445900 chr5D 95.775 71 3 0 857 927 501346998 501346928 1.840000e-21 115.0
78 TraesCS5A01G445900 chr5D 92.000 75 5 1 855 928 501347630 501347556 3.980000e-18 104.0
79 TraesCS5A01G445900 chr5D 83.193 119 12 3 7940 8058 501338489 501338379 1.430000e-17 102.0
80 TraesCS5A01G445900 chr5D 95.652 46 2 0 3036 3081 296920102 296920147 3.120000e-09 75.0
81 TraesCS5A01G445900 chr5D 100.000 31 0 0 2943 2973 296920071 296920101 3.140000e-04 58.4
82 TraesCS5A01G445900 chr5D 100.000 29 0 0 6232 6260 501497898 501497870 4.000000e-03 54.7
83 TraesCS5A01G445900 chr2A 93.443 671 38 4 6654 7318 546773465 546772795 0.000000e+00 990.0
84 TraesCS5A01G445900 chr2A 85.897 78 11 0 2 79 108029799 108029876 5.180000e-12 84.2
85 TraesCS5A01G445900 chr3B 93.294 671 39 4 6654 7318 21001495 21000825 0.000000e+00 985.0
86 TraesCS5A01G445900 chr3B 86.759 793 85 11 1971 2760 460169698 460168923 0.000000e+00 865.0
87 TraesCS5A01G445900 chr3B 90.000 460 44 2 4073 4530 460167522 460167063 1.940000e-165 593.0
88 TraesCS5A01G445900 chr3B 88.958 480 48 4 3366 3840 490890715 490891194 9.010000e-164 588.0
89 TraesCS5A01G445900 chr3B 79.730 888 113 28 6232 7092 460165183 460164336 1.510000e-161 580.0
90 TraesCS5A01G445900 chr3B 84.321 574 59 18 5187 5748 460165800 460165246 4.280000e-147 532.0
91 TraesCS5A01G445900 chr3B 81.831 699 64 27 4529 5179 460166657 460165974 5.540000e-146 529.0
92 TraesCS5A01G445900 chr3B 81.886 668 70 27 1089 1732 460170348 460169708 4.310000e-142 516.0
93 TraesCS5A01G445900 chr3B 94.737 57 3 0 3852 3908 460168518 460168462 1.110000e-13 89.8
94 TraesCS5A01G445900 chr3B 85.227 88 11 2 1 86 697173397 697173484 1.110000e-13 89.8
95 TraesCS5A01G445900 chr3A 90.631 491 41 4 3365 3851 38273081 38273570 0.000000e+00 647.0
96 TraesCS5A01G445900 chr3A 89.270 466 44 5 3366 3826 500991444 500991908 5.420000e-161 579.0
97 TraesCS5A01G445900 chr7B 88.866 476 51 2 3364 3837 612313107 612313582 1.170000e-162 584.0
98 TraesCS5A01G445900 chr7B 89.130 460 46 4 3365 3821 709247261 709246803 3.260000e-158 569.0
99 TraesCS5A01G445900 chr7A 88.235 476 53 3 3364 3837 648144751 648145225 4.220000e-157 566.0
100 TraesCS5A01G445900 chr7A 93.827 81 5 0 1 81 419271667 419271747 1.100000e-23 122.0
101 TraesCS5A01G445900 chr7A 94.805 77 4 0 1 77 419272438 419272514 3.950000e-23 121.0
102 TraesCS5A01G445900 chr7A 92.105 76 6 0 4 79 691539132 691539057 3.080000e-19 108.0
103 TraesCS5A01G445900 chr6B 85.778 225 22 4 1840 2061 42830744 42830527 6.290000e-56 230.0
104 TraesCS5A01G445900 chr6A 88.889 81 9 0 1 81 132183498 132183578 5.150000e-17 100.0
105 TraesCS5A01G445900 chr4B 88.679 53 6 0 29 81 79254670 79254618 1.880000e-06 65.8
106 TraesCS5A01G445900 chr2D 84.746 59 8 1 29 86 533209501 533209559 3.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G445900 chr5A 626023226 626031283 8057 False 14881.000000 14881 100.000000 1 8058 1 chr5A.!!$F1 8057
1 TraesCS5A01G445900 chr5A 625703389 625710104 6715 False 687.833333 2161 85.689167 1069 7383 6 chr5A.!!$F2 6314
2 TraesCS5A01G445900 chr5A 599483094 599485199 2105 True 623.333333 1149 85.655333 1184 4060 3 chr5A.!!$R3 2876
3 TraesCS5A01G445900 chr5A 599472594 599475620 3026 True 454.000000 575 85.535000 4073 6811 4 chr5A.!!$R2 2738
4 TraesCS5A01G445900 chr5B 622965692 622975311 9619 True 1284.714286 2830 86.439143 170 8058 7 chr5B.!!$R3 7888
5 TraesCS5A01G445900 chr5B 633304211 633312599 8388 False 911.142857 2322 89.565714 120 7734 7 chr5B.!!$F2 7614
6 TraesCS5A01G445900 chr5B 628814760 628815775 1015 True 454.000000 579 85.725500 6884 7918 2 chr5B.!!$R4 1034
7 TraesCS5A01G445900 chr5B 633156370 633164623 8253 False 363.411111 640 85.762000 1069 7929 9 chr5B.!!$F1 6860
8 TraesCS5A01G445900 chr5B 629955673 629963305 7632 True 344.325000 632 84.410375 1069 7930 8 chr5B.!!$R5 6861
9 TraesCS5A01G445900 chr5D 508274917 508277042 2125 True 1183.500000 2167 85.487500 4529 7405 2 chr5D.!!$R3 2876
10 TraesCS5A01G445900 chr5D 508285914 508288988 3074 True 803.666667 1075 87.977667 1022 2762 3 chr5D.!!$R4 1740
11 TraesCS5A01G445900 chr5D 501338379 501348574 10195 True 743.583333 2248 89.606750 86 8058 12 chr5D.!!$R1 7972
12 TraesCS5A01G445900 chr5D 501495848 501503492 7644 True 512.188889 1478 87.374667 1069 7929 9 chr5D.!!$R2 6860
13 TraesCS5A01G445900 chr5D 296918813 296925277 6464 False 333.771429 1116 89.719714 1661 5418 7 chr5D.!!$F1 3757
14 TraesCS5A01G445900 chr2A 546772795 546773465 670 True 990.000000 990 93.443000 6654 7318 1 chr2A.!!$R1 664
15 TraesCS5A01G445900 chr3B 21000825 21001495 670 True 985.000000 985 93.294000 6654 7318 1 chr3B.!!$R1 664
16 TraesCS5A01G445900 chr3B 460164336 460170348 6012 True 529.257143 865 85.609143 1089 7092 7 chr3B.!!$R2 6003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 1189 0.238553 GGCGACACCTTTGAGCTTTC 59.761 55.000 0.00 0.0 34.51 2.62 F
1881 6202 0.031994 CCCAAAGAAAGGGCAACACG 59.968 55.000 0.00 0.0 39.96 4.49 F
2561 6991 0.536724 GGCCTGGGCATTTTTGGTAG 59.463 55.000 16.34 0.0 44.11 3.18 F
2815 7312 0.036022 GTTCTGCAGGAGAAGCCAGT 59.964 55.000 15.13 0.0 41.58 4.00 F
3237 7891 1.140852 CTGTCCAGTCCCAGTTGAACA 59.859 52.381 0.00 0.0 0.00 3.18 F
4111 10832 0.041833 AGGTCTCTGGCAAGCCTCTA 59.958 55.000 12.96 0.0 36.94 2.43 F
4230 10951 0.687757 TCCTCCTCCAGGTCATTCGG 60.688 60.000 0.00 0.0 43.95 4.30 F
5537 15215 0.030092 CCATAGGAGTCCCCTTCCCA 60.030 60.000 5.25 0.0 44.85 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 6220 1.064758 ACTTGTGTGTCAAAGGGCAGA 60.065 47.619 0.00 0.00 35.48 4.26 R
2746 7177 0.037447 AGAGGCTGGGTTGCTCTTTC 59.963 55.000 0.00 0.00 0.00 2.62 R
3466 9117 0.878961 GGCCATAGTTAACCTCGCGG 60.879 60.000 6.13 0.00 0.00 6.46 R
4005 9686 1.177401 GGAGGTTGAAGCCATGGAAC 58.823 55.000 18.40 10.83 0.00 3.62 R
4862 14212 0.097325 GTTCACCGCGTTGTTGAACA 59.903 50.000 23.87 0.00 38.80 3.18 R
5059 14461 0.108774 TGAAATACCACCCGTGTGCA 59.891 50.000 0.00 0.00 41.35 4.57 R
5957 16096 0.468226 AGAAGGTTTGTGACGAGGCA 59.532 50.000 0.00 0.00 0.00 4.75 R
7169 18986 0.897621 CAAACCCAAGGGATTCAGCC 59.102 55.000 13.15 0.00 38.96 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.630054 TGGGTTTATGTATATTTATGAGGTGC 57.370 34.615 0.00 0.00 0.00 5.01
33 34 7.389330 TGGGTTTATGTATATTTATGAGGTGCG 59.611 37.037 0.00 0.00 0.00 5.34
34 35 7.389607 GGGTTTATGTATATTTATGAGGTGCGT 59.610 37.037 0.00 0.00 0.00 5.24
41 42 9.602568 TGTATATTTATGAGGTGCGTTTAAAGA 57.397 29.630 0.00 0.00 0.00 2.52
45 46 2.846193 TGAGGTGCGTTTAAAGAAGCT 58.154 42.857 10.36 0.00 0.00 3.74
47 48 4.382291 TGAGGTGCGTTTAAAGAAGCTTA 58.618 39.130 0.00 0.00 0.00 3.09
48 49 5.001232 TGAGGTGCGTTTAAAGAAGCTTAT 58.999 37.500 0.00 0.00 0.00 1.73
49 50 5.106712 TGAGGTGCGTTTAAAGAAGCTTATG 60.107 40.000 0.00 0.00 0.00 1.90
50 51 3.851969 GGTGCGTTTAAAGAAGCTTATGC 59.148 43.478 0.00 0.00 40.05 3.14
90 91 8.097038 AGTAGTAGAGATAGAGAAGAGATGCTG 58.903 40.741 0.00 0.00 0.00 4.41
95 96 0.831966 AGAGAAGAGATGCTGCTGGG 59.168 55.000 0.00 0.00 30.35 4.45
282 287 1.073923 GAGTGTGGTTGTCCCAGGATT 59.926 52.381 0.00 0.00 46.45 3.01
388 393 3.185455 GGATGGATAGTTGGGGATAGCT 58.815 50.000 0.00 0.00 0.00 3.32
431 436 9.467990 CAAATCATGCATTCGTTTATTTCTTTG 57.532 29.630 0.00 0.00 0.00 2.77
472 477 6.524101 TTGTTTTAGGGAAGACATTATGGC 57.476 37.500 0.00 0.00 0.00 4.40
475 480 6.723977 TGTTTTAGGGAAGACATTATGGCTTT 59.276 34.615 15.11 1.67 44.95 3.51
504 509 0.804989 AAATCGGAAAGGAAGCGCTG 59.195 50.000 12.58 0.00 0.00 5.18
576 1164 8.289618 TCACCTTTGAGATTGAAGTTTTTATCG 58.710 33.333 0.00 0.00 0.00 2.92
601 1189 0.238553 GGCGACACCTTTGAGCTTTC 59.761 55.000 0.00 0.00 34.51 2.62
623 1215 1.884067 GCTTCTCCCACCTGGTTTCAG 60.884 57.143 0.00 0.00 40.59 3.02
649 1241 1.353694 AGCTTCCACTCATGCTTTCCT 59.646 47.619 0.00 0.00 30.96 3.36
654 1246 2.376518 TCCACTCATGCTTTCCTTCCTT 59.623 45.455 0.00 0.00 0.00 3.36
657 1249 3.190118 CACTCATGCTTTCCTTCCTTGAC 59.810 47.826 0.00 0.00 0.00 3.18
690 2673 6.150140 AGTCTCCAATTTCAATGTAAGCTCAC 59.850 38.462 0.00 0.00 0.00 3.51
726 2709 1.421410 GCCGTATGCCTCGTCAACAG 61.421 60.000 0.00 0.00 0.00 3.16
757 3158 2.021457 ACAAACTTGACCAACCTTCCG 58.979 47.619 0.00 0.00 0.00 4.30
889 3588 3.408851 GGACGAACCGGTCAACGC 61.409 66.667 22.20 16.33 42.52 4.84
891 3590 2.202905 ACGAACCGGTCAACGCAA 60.203 55.556 22.20 0.00 42.52 4.85
892 3591 1.562575 GACGAACCGGTCAACGCAAT 61.563 55.000 22.20 8.69 42.52 3.56
893 3592 1.131826 CGAACCGGTCAACGCAATC 59.868 57.895 8.04 0.00 42.52 2.67
894 3593 1.500396 GAACCGGTCAACGCAATCC 59.500 57.895 8.04 0.00 42.52 3.01
895 3594 1.918868 GAACCGGTCAACGCAATCCC 61.919 60.000 8.04 0.00 42.52 3.85
897 3596 3.496131 CGGTCAACGCAATCCCGG 61.496 66.667 0.00 0.00 35.11 5.73
899 3598 2.396157 GGTCAACGCAATCCCGGAC 61.396 63.158 0.73 0.00 0.00 4.79
901 3600 4.160635 CAACGCAATCCCGGACGC 62.161 66.667 0.73 0.00 0.00 5.19
902 3601 4.690719 AACGCAATCCCGGACGCA 62.691 61.111 0.73 0.00 0.00 5.24
916 3615 4.088762 CGCACGCGTGGCTTCAAT 62.089 61.111 37.47 0.00 34.35 2.57
917 3616 2.202349 GCACGCGTGGCTTCAATC 60.202 61.111 37.47 16.66 0.00 2.67
918 3617 2.480555 CACGCGTGGCTTCAATCC 59.519 61.111 31.15 0.00 0.00 3.01
919 3618 2.031919 ACGCGTGGCTTCAATCCA 59.968 55.556 12.93 0.00 0.00 3.41
920 3619 2.034879 ACGCGTGGCTTCAATCCAG 61.035 57.895 12.93 0.00 33.63 3.86
922 3621 2.787249 CGTGGCTTCAATCCAGCG 59.213 61.111 0.00 0.00 38.24 5.18
924 3623 2.751436 TGGCTTCAATCCAGCGGC 60.751 61.111 0.00 0.00 38.24 6.53
928 3627 1.377725 CTTCAATCCAGCGGCAGGT 60.378 57.895 11.42 0.00 0.00 4.00
929 3628 0.962356 CTTCAATCCAGCGGCAGGTT 60.962 55.000 11.42 0.00 0.00 3.50
930 3629 0.539438 TTCAATCCAGCGGCAGGTTT 60.539 50.000 11.42 6.61 0.00 3.27
932 3631 1.064758 TCAATCCAGCGGCAGGTTTAT 60.065 47.619 11.42 0.00 0.00 1.40
933 3632 1.750778 CAATCCAGCGGCAGGTTTATT 59.249 47.619 11.42 1.41 0.00 1.40
934 3633 2.143876 ATCCAGCGGCAGGTTTATTT 57.856 45.000 11.42 0.00 0.00 1.40
935 3634 2.791347 TCCAGCGGCAGGTTTATTTA 57.209 45.000 11.42 0.00 0.00 1.40
936 3635 2.361789 TCCAGCGGCAGGTTTATTTAC 58.638 47.619 11.42 0.00 0.00 2.01
937 3636 2.088423 CCAGCGGCAGGTTTATTTACA 58.912 47.619 1.45 0.00 0.00 2.41
938 3637 2.490115 CCAGCGGCAGGTTTATTTACAA 59.510 45.455 1.45 0.00 0.00 2.41
940 3639 3.438781 CAGCGGCAGGTTTATTTACAAGA 59.561 43.478 1.45 0.00 0.00 3.02
941 3640 3.689649 AGCGGCAGGTTTATTTACAAGAG 59.310 43.478 1.45 0.00 0.00 2.85
942 3641 3.687698 GCGGCAGGTTTATTTACAAGAGA 59.312 43.478 0.00 0.00 0.00 3.10
943 3642 4.335594 GCGGCAGGTTTATTTACAAGAGAT 59.664 41.667 0.00 0.00 0.00 2.75
944 3643 5.163652 GCGGCAGGTTTATTTACAAGAGATT 60.164 40.000 0.00 0.00 0.00 2.40
945 3644 6.625081 GCGGCAGGTTTATTTACAAGAGATTT 60.625 38.462 0.00 0.00 0.00 2.17
946 3645 7.312899 CGGCAGGTTTATTTACAAGAGATTTT 58.687 34.615 0.00 0.00 0.00 1.82
947 3646 7.812669 CGGCAGGTTTATTTACAAGAGATTTTT 59.187 33.333 0.00 0.00 0.00 1.94
975 3674 9.403583 TCTTTTTAATATATTTTGTCCTCGGCT 57.596 29.630 2.68 0.00 0.00 5.52
978 3677 7.739498 TTAATATATTTTGTCCTCGGCTTCC 57.261 36.000 2.68 0.00 0.00 3.46
997 3696 3.691342 CTCGCGACCCACTTCCCA 61.691 66.667 3.71 0.00 0.00 4.37
998 3697 3.649277 CTCGCGACCCACTTCCCAG 62.649 68.421 3.71 0.00 0.00 4.45
999 3698 4.003788 CGCGACCCACTTCCCAGT 62.004 66.667 0.00 0.00 0.00 4.00
1000 3699 2.430367 GCGACCCACTTCCCAGTT 59.570 61.111 0.00 0.00 0.00 3.16
1001 3700 1.671379 GCGACCCACTTCCCAGTTC 60.671 63.158 0.00 0.00 0.00 3.01
1004 3703 1.386772 ACCCACTTCCCAGTTCCCA 60.387 57.895 0.00 0.00 0.00 4.37
1007 3706 0.036875 CCACTTCCCAGTTCCCACTC 59.963 60.000 0.00 0.00 0.00 3.51
1009 3708 1.134438 ACTTCCCAGTTCCCACTCCC 61.134 60.000 0.00 0.00 0.00 4.30
1010 3709 1.073319 TTCCCAGTTCCCACTCCCA 60.073 57.895 0.00 0.00 0.00 4.37
1011 3710 1.423794 TTCCCAGTTCCCACTCCCAC 61.424 60.000 0.00 0.00 0.00 4.61
1014 3713 2.928396 AGTTCCCACTCCCACCCG 60.928 66.667 0.00 0.00 0.00 5.28
1015 3714 4.029809 GTTCCCACTCCCACCCGG 62.030 72.222 0.00 0.00 0.00 5.73
1023 3722 4.779733 TCCCACCCGGCTCTCCTC 62.780 72.222 0.00 0.00 0.00 3.71
1319 5511 2.862223 CGCTCCTCCCGGAATCTCC 61.862 68.421 0.73 0.00 39.29 3.71
1729 6032 7.331934 TCTCAGTGTCAATGCTTCATTTAGTAC 59.668 37.037 0.00 0.00 31.05 2.73
1734 6037 9.410556 GTGTCAATGCTTCATTTAGTACATTTT 57.589 29.630 0.00 0.00 31.05 1.82
1735 6038 9.979578 TGTCAATGCTTCATTTAGTACATTTTT 57.020 25.926 0.00 0.00 31.05 1.94
1771 6080 5.013568 TCAAGGTGTTCGACAGTTCTAAA 57.986 39.130 0.00 0.00 0.00 1.85
1777 6086 7.159372 AGGTGTTCGACAGTTCTAAATAATGT 58.841 34.615 0.00 0.00 0.00 2.71
1881 6202 0.031994 CCCAAAGAAAGGGCAACACG 59.968 55.000 0.00 0.00 39.96 4.49
1899 6220 6.237969 GCAACACGGTAAATCAATTTGTGTTT 60.238 34.615 14.91 2.77 39.89 2.83
1938 6292 6.742718 CACAAGTTTAAATGGCAGATAAGTCG 59.257 38.462 0.00 0.00 0.00 4.18
1949 6303 3.181526 GCAGATAAGTCGTCTGTTGCAAG 60.182 47.826 0.00 0.00 43.86 4.01
1966 6320 7.371159 TGTTGCAAGACGATATCTATCCTAAG 58.629 38.462 0.00 0.00 36.27 2.18
2082 6440 7.639945 ACACAACTTAGCTATTGTCTGTTTTC 58.360 34.615 9.32 0.00 36.92 2.29
2099 6458 5.250200 TGTTTTCGCTCAGGTTATTGGTAT 58.750 37.500 0.00 0.00 0.00 2.73
2146 6505 8.035984 GCTAAGGTTTAGAGATAGTGACACTTT 58.964 37.037 14.50 5.74 0.00 2.66
2167 6526 9.017669 CACTTTATTACCGCTTACTAGTTACTG 57.982 37.037 0.00 0.00 0.00 2.74
2200 6562 6.686632 GCTGTTCCTACATGGTATTAGAGCTT 60.687 42.308 0.00 0.00 37.07 3.74
2231 6593 4.070716 GAGAGCACATTATGATCAAGGGG 58.929 47.826 0.00 0.00 46.75 4.79
2242 6604 4.860802 TGATCAAGGGGCTGAAATTAGA 57.139 40.909 0.00 0.00 0.00 2.10
2246 6608 3.763897 TCAAGGGGCTGAAATTAGAAAGC 59.236 43.478 0.00 0.00 34.86 3.51
2380 6754 3.650942 TCTTTCCCTGCCTGTTTCTCTAA 59.349 43.478 0.00 0.00 0.00 2.10
2396 6794 2.103941 CTCTAAGGGAACATCAGGAGCC 59.896 54.545 0.00 0.00 0.00 4.70
2457 6864 5.527214 GCTCAAAACCAGCTAAAAACCAAAT 59.473 36.000 0.00 0.00 33.75 2.32
2460 6867 9.271828 CTCAAAACCAGCTAAAAACCAAATAAT 57.728 29.630 0.00 0.00 0.00 1.28
2556 6986 0.615827 GAGGAGGCCTGGGCATTTTT 60.616 55.000 23.25 0.00 44.11 1.94
2558 6988 1.598517 GAGGCCTGGGCATTTTTGG 59.401 57.895 23.25 0.00 44.11 3.28
2559 6989 1.152052 AGGCCTGGGCATTTTTGGT 60.152 52.632 23.25 0.00 44.11 3.67
2561 6991 0.536724 GGCCTGGGCATTTTTGGTAG 59.463 55.000 16.34 0.00 44.11 3.18
2562 6992 1.555967 GCCTGGGCATTTTTGGTAGA 58.444 50.000 6.75 0.00 41.49 2.59
2563 6993 2.110578 GCCTGGGCATTTTTGGTAGAT 58.889 47.619 6.75 0.00 41.49 1.98
2566 6996 2.695147 CTGGGCATTTTTGGTAGATCCC 59.305 50.000 0.00 0.00 34.77 3.85
2567 6997 2.043664 TGGGCATTTTTGGTAGATCCCA 59.956 45.455 0.00 0.00 39.96 4.37
2568 6998 2.430694 GGGCATTTTTGGTAGATCCCAC 59.569 50.000 0.00 0.00 33.14 4.61
2569 6999 3.365472 GGCATTTTTGGTAGATCCCACT 58.635 45.455 0.00 0.00 33.14 4.00
2570 7000 3.769300 GGCATTTTTGGTAGATCCCACTT 59.231 43.478 0.00 0.00 33.14 3.16
2571 7001 4.142160 GGCATTTTTGGTAGATCCCACTTC 60.142 45.833 0.00 0.00 33.14 3.01
2574 7004 4.569719 TTTTGGTAGATCCCACTTCTCC 57.430 45.455 0.00 0.00 33.14 3.71
2575 7005 3.491766 TTGGTAGATCCCACTTCTCCT 57.508 47.619 0.00 0.00 33.14 3.69
2615 7046 3.138304 GCTACATAAATCGCCATGGACA 58.862 45.455 18.40 0.00 0.00 4.02
2616 7047 3.563808 GCTACATAAATCGCCATGGACAA 59.436 43.478 18.40 0.00 0.00 3.18
2693 7124 1.613630 ACGGAAGACCTCAGGGCAT 60.614 57.895 0.00 0.00 35.63 4.40
2752 7183 5.121221 ACCAAATTTGCTTACCGAAAGAG 57.879 39.130 12.92 0.00 37.38 2.85
2771 7268 0.253044 GCAACCCAGCCTCTCACATA 59.747 55.000 0.00 0.00 0.00 2.29
2787 7284 3.687321 ATACAGCCTGCCCGCAGTG 62.687 63.158 15.22 10.27 42.15 3.66
2815 7312 0.036022 GTTCTGCAGGAGAAGCCAGT 59.964 55.000 15.13 0.00 41.58 4.00
2843 7342 2.634940 ACTGCACTTCTCCTTCAGCTTA 59.365 45.455 0.00 0.00 0.00 3.09
2847 7346 4.068599 GCACTTCTCCTTCAGCTTAAACT 58.931 43.478 0.00 0.00 0.00 2.66
2910 7457 1.458398 CCCATCATACGCAAACACCA 58.542 50.000 0.00 0.00 0.00 4.17
2911 7458 2.023673 CCCATCATACGCAAACACCAT 58.976 47.619 0.00 0.00 0.00 3.55
2973 7520 2.305635 TCTGGGTTTTCAGATAGCTGCA 59.694 45.455 2.24 0.00 42.01 4.41
2974 7521 3.084039 CTGGGTTTTCAGATAGCTGCAA 58.916 45.455 2.24 0.00 42.01 4.08
2976 7523 2.819608 GGGTTTTCAGATAGCTGCAACA 59.180 45.455 18.75 1.68 42.01 3.33
2977 7524 3.445096 GGGTTTTCAGATAGCTGCAACAT 59.555 43.478 18.75 0.00 42.01 2.71
2978 7525 4.418392 GGTTTTCAGATAGCTGCAACATG 58.582 43.478 18.75 0.00 42.01 3.21
2979 7526 4.082571 GGTTTTCAGATAGCTGCAACATGT 60.083 41.667 18.75 0.00 42.01 3.21
2992 7583 4.228317 TGCAACATGTCATGTCAATTTCG 58.772 39.130 18.66 3.75 44.07 3.46
3023 7614 6.825944 AGTTAATCCTTTGAAGGCTCTTTC 57.174 37.500 4.87 0.00 46.06 2.62
3237 7891 1.140852 CTGTCCAGTCCCAGTTGAACA 59.859 52.381 0.00 0.00 0.00 3.18
3317 8116 6.164876 TCCTCTACAGTATATAGACGAGCAC 58.835 44.000 0.00 0.00 0.00 4.40
3335 8985 1.531149 CACAGTTTCACCCAGCTTACG 59.469 52.381 0.00 0.00 0.00 3.18
3379 9029 6.125029 CCTCTTATCCAATGTTCAGGATGTT 58.875 40.000 4.30 0.00 44.15 2.71
3427 9078 5.376625 GTGATGAGTAGGGATTAATTGGCA 58.623 41.667 0.00 0.00 0.00 4.92
3466 9117 7.012989 AGCTGAATTTATCGGTAACCCATTTAC 59.987 37.037 0.00 0.00 39.66 2.01
3539 9190 5.869753 AGCAATGCACTAAGTGTCTAAAG 57.130 39.130 8.35 0.00 35.75 1.85
3605 9256 3.639672 TGTTCTGATGATGTGGCATCT 57.360 42.857 10.02 0.00 43.89 2.90
3652 9303 3.072476 CACTGAAAAGTAGGGAGGGAACA 59.928 47.826 0.00 0.00 0.00 3.18
3706 9357 1.846007 TTGGCCAGCCGATAATTTGT 58.154 45.000 5.11 0.00 39.42 2.83
3847 9513 3.769844 AGTTGACTGACCGATATGGAACT 59.230 43.478 0.00 0.00 42.00 3.01
3958 9638 1.957695 TTGTGAGCGCTGTCAGCAG 60.958 57.895 24.13 16.93 42.58 4.24
4005 9686 2.472695 TCTGGACATGAGTTTTCCCG 57.527 50.000 0.00 0.00 0.00 5.14
4066 10787 1.068055 GTTGGCAGTCAATTGCTGGAG 60.068 52.381 22.74 6.65 43.57 3.86
4111 10832 0.041833 AGGTCTCTGGCAAGCCTCTA 59.958 55.000 12.96 0.00 36.94 2.43
4137 10858 3.087031 CAGGGAATTGAAGTGATGCAGT 58.913 45.455 0.00 0.00 0.00 4.40
4230 10951 0.687757 TCCTCCTCCAGGTCATTCGG 60.688 60.000 0.00 0.00 43.95 4.30
4253 10974 5.242136 GTTTAACGCGAAAAACTTTTGTGG 58.758 37.500 23.85 0.00 33.71 4.17
4276 10997 4.239428 TGCATCTCCAGATTTGATCCAA 57.761 40.909 0.00 0.00 31.21 3.53
4353 11075 5.514279 CAGCTTCAATTTCAAGAGAAACGT 58.486 37.500 0.00 0.00 45.79 3.99
4569 13867 9.267096 CGTTAAGAAAAAGAATCTTATCACTGC 57.733 33.333 0.00 0.00 38.72 4.40
4621 13935 9.642343 AATATTGGTCAGATCAGTAGTAGTACA 57.358 33.333 10.33 0.00 0.00 2.90
4690 14023 2.293856 ACCAGGATCCCACCTCTTGTAT 60.294 50.000 8.55 0.00 38.32 2.29
4731 14067 3.999663 CGAAGTCCTCAGAAAATCTGCTT 59.000 43.478 2.48 0.94 43.95 3.91
4767 14106 7.392953 TCAGCACCATACTTTTATCAACATCAA 59.607 33.333 0.00 0.00 0.00 2.57
4808 14148 2.542824 GCGTACAATGTTGCACTGGTTT 60.543 45.455 5.59 0.00 0.00 3.27
4845 14195 2.798445 TAGCGACCTCCTCCAAGCCA 62.798 60.000 0.00 0.00 0.00 4.75
4861 14211 1.490490 AGCCAGGTTGTTCAACTCTCA 59.510 47.619 14.04 0.00 0.00 3.27
4862 14212 2.107204 AGCCAGGTTGTTCAACTCTCAT 59.893 45.455 14.04 0.00 0.00 2.90
4863 14213 2.227388 GCCAGGTTGTTCAACTCTCATG 59.773 50.000 14.04 0.00 0.00 3.07
4865 14215 3.885297 CCAGGTTGTTCAACTCTCATGTT 59.115 43.478 14.04 0.00 0.00 2.71
4866 14216 4.023707 CCAGGTTGTTCAACTCTCATGTTC 60.024 45.833 14.04 0.00 0.00 3.18
4951 14353 1.021390 GCGACATAACCAGCACAGCT 61.021 55.000 0.00 0.00 40.77 4.24
5010 14412 3.135225 GGTTTTGGCAACGGCTTTAATT 58.865 40.909 0.00 0.00 40.87 1.40
5051 14453 3.064324 GTGGCATGCACCTCACCC 61.064 66.667 21.36 0.00 0.00 4.61
5053 14455 2.036256 GGCATGCACCTCACCCTT 59.964 61.111 21.36 0.00 0.00 3.95
5055 14457 2.345760 GCATGCACCTCACCCTTGG 61.346 63.158 14.21 0.00 0.00 3.61
5059 14461 0.032615 TGCACCTCACCCTTGGTTTT 60.033 50.000 0.00 0.00 31.02 2.43
5060 14462 0.389025 GCACCTCACCCTTGGTTTTG 59.611 55.000 0.00 0.00 31.02 2.44
5087 14490 3.307480 CGGGTGGTATTTCAACTTCCTCT 60.307 47.826 0.00 0.00 0.00 3.69
5103 14573 1.007721 CCTCTTCCTCTTCCCTCCTGA 59.992 57.143 0.00 0.00 0.00 3.86
5116 14586 0.686112 CTCCTGACTCTGTCCTCCCC 60.686 65.000 0.00 0.00 0.00 4.81
5139 14609 1.206610 CCTCCGCCTCATCCTATCATG 59.793 57.143 0.00 0.00 0.00 3.07
5147 14617 4.158786 CCTCATCCTATCATGAGTGACCT 58.841 47.826 0.09 0.00 45.91 3.85
5249 14886 1.344763 CCTCCTTCTCACCGACTTTGT 59.655 52.381 0.00 0.00 0.00 2.83
5352 14996 6.475504 TCAATCCATTATAGATCCGTGCATT 58.524 36.000 0.00 0.00 0.00 3.56
5353 14997 7.619965 TCAATCCATTATAGATCCGTGCATTA 58.380 34.615 0.00 0.00 0.00 1.90
5426 15070 5.393461 GCAGTACAACTTATACGGTACCAGT 60.393 44.000 13.54 13.11 37.42 4.00
5500 15146 5.016831 GGTACCATTTTCAGGAGAATTGGT 58.983 41.667 7.15 14.03 45.30 3.67
5501 15147 5.480422 GGTACCATTTTCAGGAGAATTGGTT 59.520 40.000 7.15 4.61 42.97 3.67
5504 15159 5.221501 ACCATTTTCAGGAGAATTGGTTGTG 60.222 40.000 7.25 0.00 42.97 3.33
5514 15177 5.069516 GGAGAATTGGTTGTGCAATATGGAT 59.930 40.000 0.00 0.00 0.00 3.41
5537 15215 0.030092 CCATAGGAGTCCCCTTCCCA 60.030 60.000 5.25 0.00 44.85 4.37
5562 15240 5.419155 TGAGAGAAACTAGGACATGGTACTG 59.581 44.000 0.00 0.00 0.00 2.74
5616 15297 6.662663 AGAGGATGAGATGAACATATCGATCA 59.337 38.462 0.00 0.00 32.02 2.92
5643 15325 3.177228 TCAAGCTCTTCCCTCTTAAGCT 58.823 45.455 0.00 0.00 44.84 3.74
5706 15388 1.394618 AGGTCAGCGTCACCTCTATC 58.605 55.000 0.00 0.00 40.54 2.08
5778 15917 2.533475 GGATACATTCCAGCGGATGCG 61.533 57.143 0.65 0.65 44.74 4.73
5823 15962 3.541632 CCAAAGTGACCAGTACAACACT 58.458 45.455 0.00 0.00 43.92 3.55
5957 16096 1.985116 GCCGACTTCCAGTCCCTCT 60.985 63.158 0.00 0.00 42.12 3.69
5958 16097 1.893786 CCGACTTCCAGTCCCTCTG 59.106 63.158 0.00 0.00 42.12 3.35
5960 16099 1.599576 GACTTCCAGTCCCTCTGCC 59.400 63.158 0.00 0.00 39.28 4.85
5961 16100 0.907230 GACTTCCAGTCCCTCTGCCT 60.907 60.000 0.00 0.00 39.28 4.75
5962 16101 0.907230 ACTTCCAGTCCCTCTGCCTC 60.907 60.000 0.00 0.00 42.38 4.70
5963 16102 1.954362 CTTCCAGTCCCTCTGCCTCG 61.954 65.000 0.00 0.00 42.38 4.63
5964 16103 2.681778 CCAGTCCCTCTGCCTCGT 60.682 66.667 0.00 0.00 42.38 4.18
5965 16104 2.716017 CCAGTCCCTCTGCCTCGTC 61.716 68.421 0.00 0.00 42.38 4.20
5966 16105 1.979155 CAGTCCCTCTGCCTCGTCA 60.979 63.158 0.00 0.00 37.36 4.35
5967 16106 1.979693 AGTCCCTCTGCCTCGTCAC 60.980 63.158 0.00 0.00 0.00 3.67
6001 16140 2.657296 CACACGCGTGGACGAAGT 60.657 61.111 39.21 17.03 43.02 3.01
6026 16165 4.389992 ACGCTGTTGAAGACTATGTCAATG 59.610 41.667 0.46 0.00 36.23 2.82
6060 16211 0.259065 TCGAGTATCCCTGGCACTCT 59.741 55.000 15.10 1.17 37.20 3.24
6098 16249 0.550914 AGCTCCACCAGTCAACCAAA 59.449 50.000 0.00 0.00 0.00 3.28
6105 16256 3.502211 CCACCAGTCAACCAAATCTGTAC 59.498 47.826 0.00 0.00 0.00 2.90
6107 16258 4.821805 CACCAGTCAACCAAATCTGTACTT 59.178 41.667 0.00 0.00 0.00 2.24
6116 16267 4.844655 ACCAAATCTGTACTTAGGTCAGGT 59.155 41.667 0.00 0.00 0.00 4.00
6140 16291 1.123928 AGTCTATCTTCCCCCAAGCG 58.876 55.000 0.00 0.00 31.26 4.68
6176 16327 3.008375 CCCAAACCTCATGAGAGAAGACA 59.992 47.826 24.62 0.00 44.98 3.41
6262 16452 2.298446 TGTGCAGAAGACAGAAGAGAGG 59.702 50.000 0.00 0.00 0.00 3.69
6264 16454 2.175202 GCAGAAGACAGAAGAGAGGGA 58.825 52.381 0.00 0.00 0.00 4.20
6305 16505 0.994247 AGAAGGTGATGTGGCATCCA 59.006 50.000 6.65 0.00 0.00 3.41
6335 16826 0.109342 ATCCGGATGATGTGGAAGCC 59.891 55.000 18.33 0.00 34.97 4.35
6372 18103 5.345741 GCGTCGGTGTTAGTAGTTTTTGATA 59.654 40.000 0.00 0.00 0.00 2.15
6446 18180 5.637006 TGCCGACTAAAATGTAAATTGCT 57.363 34.783 0.00 0.00 0.00 3.91
6647 18408 2.965831 CGGATAATGGACCTCCTCTTCA 59.034 50.000 0.00 0.00 36.82 3.02
6826 18598 3.063084 GGAGTCGTCCTCGCAGGT 61.063 66.667 2.68 0.00 41.46 4.00
6914 18688 5.803552 TCATTGTATCAACTGTCATGTGGA 58.196 37.500 0.00 0.00 0.00 4.02
6937 18719 3.233355 CCTTCGGGGTGTGAAGAAG 57.767 57.895 4.39 0.00 44.42 2.85
7062 18871 6.647334 TTGATGAGTTGCAAAGACCATTTA 57.353 33.333 0.00 0.00 0.00 1.40
7134 18948 6.148645 TGCTTGCAGTTATTCGTCAAAGATTA 59.851 34.615 0.00 0.00 0.00 1.75
7135 18949 7.148255 TGCTTGCAGTTATTCGTCAAAGATTAT 60.148 33.333 0.00 0.00 0.00 1.28
7138 18952 8.262715 TGCAGTTATTCGTCAAAGATTATGAA 57.737 30.769 0.00 0.00 0.00 2.57
7169 18986 6.363577 AGTAGTGAACAGATGTTGTGTTTG 57.636 37.500 2.31 0.00 40.74 2.93
7254 19075 6.531503 TCAAGATGGAAGTCTGTAACTAGG 57.468 41.667 0.00 0.00 37.17 3.02
7259 19081 7.560368 AGATGGAAGTCTGTAACTAGGATTTG 58.440 38.462 0.00 0.00 37.17 2.32
7263 21556 6.258947 GGAAGTCTGTAACTAGGATTTGATGC 59.741 42.308 0.00 0.00 37.17 3.91
7276 21569 2.772568 TTGATGCCACAAACTTGTCG 57.227 45.000 0.00 0.00 39.91 4.35
7317 21624 4.020928 TGGAAGTTTCACTGGCGTAAGATA 60.021 41.667 0.00 0.00 43.02 1.98
7318 21625 5.116882 GGAAGTTTCACTGGCGTAAGATAT 58.883 41.667 0.00 0.00 43.02 1.63
7319 21626 5.006746 GGAAGTTTCACTGGCGTAAGATATG 59.993 44.000 0.00 0.00 43.02 1.78
7320 21627 5.086104 AGTTTCACTGGCGTAAGATATGT 57.914 39.130 0.00 0.00 43.02 2.29
7328 21639 5.706369 ACTGGCGTAAGATATGTAGTAGAGG 59.294 44.000 0.00 0.00 43.02 3.69
7417 21745 7.083875 AGAAGTTGTGTTTCGAATGAAGAAA 57.916 32.000 0.00 0.00 35.06 2.52
7418 21746 7.535139 AGAAGTTGTGTTTCGAATGAAGAAAA 58.465 30.769 0.00 0.00 39.03 2.29
7419 21747 8.190784 AGAAGTTGTGTTTCGAATGAAGAAAAT 58.809 29.630 0.00 0.00 39.03 1.82
7593 22225 3.700350 CTCCCTCCCTCCCCTGGT 61.700 72.222 0.00 0.00 0.00 4.00
7594 22226 3.695825 TCCCTCCCTCCCCTGGTC 61.696 72.222 0.00 0.00 0.00 4.02
7595 22227 4.024984 CCCTCCCTCCCCTGGTCA 62.025 72.222 0.00 0.00 0.00 4.02
7687 22335 3.064324 GCTTTGCAGGGCCGACAT 61.064 61.111 0.00 0.00 0.00 3.06
7742 22402 3.267233 ATTCTGCCCTGCCCACCA 61.267 61.111 0.00 0.00 0.00 4.17
7769 22437 3.274455 CTCTGTCGCCTGCGTCTGT 62.274 63.158 11.68 0.00 40.74 3.41
7774 22442 3.406361 CGCCTGCGTCTGTGTGTC 61.406 66.667 2.83 0.00 34.35 3.67
7814 22516 4.879197 ATGGAAGAAAGCAAGGGAAAAG 57.121 40.909 0.00 0.00 0.00 2.27
7882 24504 3.483869 GGCAGGCCGAGAAGGGAT 61.484 66.667 0.00 0.00 41.48 3.85
7885 24507 2.366167 AGGCCGAGAAGGGATGCT 60.366 61.111 0.00 0.00 41.48 3.79
7929 24553 0.866427 GAGATCATCTGGTGCATGCG 59.134 55.000 14.09 0.00 0.00 4.73
7930 24554 1.164662 AGATCATCTGGTGCATGCGC 61.165 55.000 23.05 23.05 39.24 6.09
7979 24647 1.143073 GAACTGGAGTTTGGTGGGTCT 59.857 52.381 0.00 0.00 38.56 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.243105 GCACCTCATAAATATACATAAACCCAT 57.757 33.333 0.00 0.00 0.00 4.00
7 8 7.389330 CGCACCTCATAAATATACATAAACCCA 59.611 37.037 0.00 0.00 0.00 4.51
9 10 8.319143 ACGCACCTCATAAATATACATAAACC 57.681 34.615 0.00 0.00 0.00 3.27
18 19 8.129211 GCTTCTTTAAACGCACCTCATAAATAT 58.871 33.333 0.00 0.00 0.00 1.28
19 20 7.335924 AGCTTCTTTAAACGCACCTCATAAATA 59.664 33.333 0.00 0.00 0.00 1.40
20 21 6.151144 AGCTTCTTTAAACGCACCTCATAAAT 59.849 34.615 0.00 0.00 0.00 1.40
21 22 5.472137 AGCTTCTTTAAACGCACCTCATAAA 59.528 36.000 0.00 0.00 0.00 1.40
22 23 5.001232 AGCTTCTTTAAACGCACCTCATAA 58.999 37.500 0.00 0.00 0.00 1.90
23 24 4.575885 AGCTTCTTTAAACGCACCTCATA 58.424 39.130 0.00 0.00 0.00 2.15
25 26 2.846193 AGCTTCTTTAAACGCACCTCA 58.154 42.857 0.00 0.00 0.00 3.86
26 27 3.898517 AAGCTTCTTTAAACGCACCTC 57.101 42.857 0.00 0.00 0.00 3.85
27 28 4.379499 GCATAAGCTTCTTTAAACGCACCT 60.379 41.667 0.00 0.00 37.91 4.00
28 29 3.851969 GCATAAGCTTCTTTAAACGCACC 59.148 43.478 0.00 0.00 37.91 5.01
62 63 9.938280 GCATCTCTTCTCTATCTCTACTACTAA 57.062 37.037 0.00 0.00 0.00 2.24
64 65 8.097038 CAGCATCTCTTCTCTATCTCTACTACT 58.903 40.741 0.00 0.00 0.00 2.57
65 66 7.148407 GCAGCATCTCTTCTCTATCTCTACTAC 60.148 44.444 0.00 0.00 0.00 2.73
67 68 5.707298 GCAGCATCTCTTCTCTATCTCTACT 59.293 44.000 0.00 0.00 0.00 2.57
71 72 4.321452 CCAGCAGCATCTCTTCTCTATCTC 60.321 50.000 0.00 0.00 0.00 2.75
73 74 3.306225 CCCAGCAGCATCTCTTCTCTATC 60.306 52.174 0.00 0.00 0.00 2.08
75 76 2.037901 CCCAGCAGCATCTCTTCTCTA 58.962 52.381 0.00 0.00 0.00 2.43
76 77 0.831966 CCCAGCAGCATCTCTTCTCT 59.168 55.000 0.00 0.00 0.00 3.10
78 79 0.252479 CACCCAGCAGCATCTCTTCT 59.748 55.000 0.00 0.00 0.00 2.85
79 80 0.251354 TCACCCAGCAGCATCTCTTC 59.749 55.000 0.00 0.00 0.00 2.87
80 81 0.694771 TTCACCCAGCAGCATCTCTT 59.305 50.000 0.00 0.00 0.00 2.85
81 82 0.694771 TTTCACCCAGCAGCATCTCT 59.305 50.000 0.00 0.00 0.00 3.10
82 83 1.093159 CTTTCACCCAGCAGCATCTC 58.907 55.000 0.00 0.00 0.00 2.75
84 85 0.322816 TCCTTTCACCCAGCAGCATC 60.323 55.000 0.00 0.00 0.00 3.91
90 91 0.402121 AGGTTCTCCTTTCACCCAGC 59.598 55.000 0.00 0.00 42.12 4.85
110 111 1.063266 ACAAAGCTCCACAAGGGGAAA 60.063 47.619 0.00 0.00 37.73 3.13
175 177 2.427453 CACAAGCTCTACCACGGATAGT 59.573 50.000 0.00 0.00 0.00 2.12
354 359 4.881850 ACTATCCATCCAAACCACGAAATC 59.118 41.667 0.00 0.00 0.00 2.17
388 393 5.825532 TGATTTGAATATGGACCCAGTCAA 58.174 37.500 2.84 2.84 33.68 3.18
431 436 2.290323 ACAAGCTACCACCATCAAGACC 60.290 50.000 0.00 0.00 0.00 3.85
472 477 7.375053 TCCTTTCCGATTTCCATTAACAAAAG 58.625 34.615 0.00 0.00 0.00 2.27
475 480 6.571537 GCTTCCTTTCCGATTTCCATTAACAA 60.572 38.462 0.00 0.00 0.00 2.83
504 509 7.558081 ACCTCCTAGATTATTTTTCCAAGAAGC 59.442 37.037 0.00 0.00 0.00 3.86
511 516 9.286170 GGTAATGACCTCCTAGATTATTTTTCC 57.714 37.037 0.00 0.00 43.16 3.13
540 1125 6.761242 TCAATCTCAAAGGTGATATTGTACCG 59.239 38.462 12.01 0.00 43.63 4.02
541 1126 8.506168 TTCAATCTCAAAGGTGATATTGTACC 57.494 34.615 12.01 0.00 43.63 3.34
576 1164 2.665185 AAAGGTGTCGCCACTCGC 60.665 61.111 4.97 0.00 41.53 5.03
601 1189 0.111253 AAACCAGGTGGGAGAAGCTG 59.889 55.000 0.00 0.00 43.71 4.24
623 1215 1.198637 GCATGAGTGGAAGCTCACAAC 59.801 52.381 8.15 0.00 46.72 3.32
657 1249 6.652481 ACATTGAAATTGGAGACTGACACTAG 59.348 38.462 0.00 0.00 0.00 2.57
669 1261 5.076182 TGGTGAGCTTACATTGAAATTGGA 58.924 37.500 11.15 0.00 0.00 3.53
670 1262 5.389859 TGGTGAGCTTACATTGAAATTGG 57.610 39.130 11.15 0.00 0.00 3.16
676 1268 3.346315 CCACATGGTGAGCTTACATTGA 58.654 45.455 11.15 0.00 35.23 2.57
690 2673 1.379044 GCCAGGAGGAACCACATGG 60.379 63.158 15.38 15.38 42.04 3.66
719 2702 1.663643 TGTTCTTGACGCACTGTTGAC 59.336 47.619 0.00 0.00 0.00 3.18
726 2709 3.398954 TCAAGTTTGTTCTTGACGCAC 57.601 42.857 5.23 0.00 45.62 5.34
746 2780 2.430367 GCTGGTCGGAAGGTTGGT 59.570 61.111 0.00 0.00 0.00 3.67
757 3158 4.479993 ATGCTGCTCCCGCTGGTC 62.480 66.667 0.00 0.00 35.83 4.02
800 3243 1.535204 CGGTTCCATTGCCAAGGCTT 61.535 55.000 12.96 0.00 42.51 4.35
899 3598 3.982424 GATTGAAGCCACGCGTGCG 62.982 63.158 33.17 25.39 46.03 5.34
901 3600 2.244436 CTGGATTGAAGCCACGCGTG 62.244 60.000 31.77 31.77 0.00 5.34
902 3601 2.031919 TGGATTGAAGCCACGCGT 59.968 55.556 5.58 5.58 0.00 6.01
903 3602 2.787249 CTGGATTGAAGCCACGCG 59.213 61.111 3.53 3.53 0.00 6.01
904 3603 2.486966 GCTGGATTGAAGCCACGC 59.513 61.111 0.00 3.01 34.45 5.34
905 3604 2.753966 CCGCTGGATTGAAGCCACG 61.754 63.158 14.39 14.39 37.37 4.94
906 3605 3.056313 GCCGCTGGATTGAAGCCAC 62.056 63.158 0.00 0.00 37.37 5.01
907 3606 2.751436 GCCGCTGGATTGAAGCCA 60.751 61.111 0.85 0.85 37.37 4.75
910 3609 0.962356 AACCTGCCGCTGGATTGAAG 60.962 55.000 22.07 0.00 0.00 3.02
912 3611 0.326595 TAAACCTGCCGCTGGATTGA 59.673 50.000 22.07 4.34 0.00 2.57
913 3612 1.392589 ATAAACCTGCCGCTGGATTG 58.607 50.000 22.07 0.00 0.00 2.67
914 3613 2.143876 AATAAACCTGCCGCTGGATT 57.856 45.000 22.07 18.10 0.00 3.01
915 3614 2.143876 AAATAAACCTGCCGCTGGAT 57.856 45.000 22.07 8.27 0.00 3.41
916 3615 2.290387 TGTAAATAAACCTGCCGCTGGA 60.290 45.455 22.07 1.02 0.00 3.86
917 3616 2.088423 TGTAAATAAACCTGCCGCTGG 58.912 47.619 14.39 14.39 0.00 4.85
918 3617 3.438781 TCTTGTAAATAAACCTGCCGCTG 59.561 43.478 0.00 0.00 0.00 5.18
919 3618 3.681593 TCTTGTAAATAAACCTGCCGCT 58.318 40.909 0.00 0.00 0.00 5.52
920 3619 3.687698 TCTCTTGTAAATAAACCTGCCGC 59.312 43.478 0.00 0.00 0.00 6.53
949 3648 9.403583 AGCCGAGGACAAAATATATTAAAAAGA 57.596 29.630 0.00 0.00 0.00 2.52
952 3651 8.626526 GGAAGCCGAGGACAAAATATATTAAAA 58.373 33.333 0.00 0.00 0.00 1.52
954 3653 7.739498 GGAAGCCGAGGACAAAATATATTAA 57.261 36.000 0.00 0.00 0.00 1.40
980 3679 3.649277 CTGGGAAGTGGGTCGCGAG 62.649 68.421 10.24 0.00 33.32 5.03
981 3680 3.691342 CTGGGAAGTGGGTCGCGA 61.691 66.667 3.71 3.71 33.32 5.87
983 3682 1.671379 GAACTGGGAAGTGGGTCGC 60.671 63.158 0.00 0.00 0.00 5.19
984 3683 1.003718 GGAACTGGGAAGTGGGTCG 60.004 63.158 0.00 0.00 0.00 4.79
985 3684 1.379146 GGGAACTGGGAAGTGGGTC 59.621 63.158 0.00 0.00 0.00 4.46
986 3685 1.386772 TGGGAACTGGGAAGTGGGT 60.387 57.895 0.00 0.00 0.00 4.51
987 3686 1.074951 GTGGGAACTGGGAAGTGGG 59.925 63.158 0.00 0.00 0.00 4.61
988 3687 0.036875 GAGTGGGAACTGGGAAGTGG 59.963 60.000 0.00 0.00 0.00 4.00
989 3688 0.036875 GGAGTGGGAACTGGGAAGTG 59.963 60.000 0.00 0.00 0.00 3.16
990 3689 1.134438 GGGAGTGGGAACTGGGAAGT 61.134 60.000 0.00 0.00 0.00 3.01
991 3690 1.133809 TGGGAGTGGGAACTGGGAAG 61.134 60.000 0.00 0.00 0.00 3.46
992 3691 1.073319 TGGGAGTGGGAACTGGGAA 60.073 57.895 0.00 0.00 0.00 3.97
993 3692 1.846124 GTGGGAGTGGGAACTGGGA 60.846 63.158 0.00 0.00 0.00 4.37
996 3695 2.757077 GGGTGGGAGTGGGAACTG 59.243 66.667 0.00 0.00 0.00 3.16
997 3696 2.928396 CGGGTGGGAGTGGGAACT 60.928 66.667 0.00 0.00 0.00 3.01
998 3697 4.029809 CCGGGTGGGAGTGGGAAC 62.030 72.222 0.00 0.00 38.47 3.62
1007 3706 4.787280 AGAGGAGAGCCGGGTGGG 62.787 72.222 12.94 0.00 39.96 4.61
1009 3708 3.522731 CGAGAGGAGAGCCGGGTG 61.523 72.222 12.94 0.00 39.96 4.61
1010 3709 3.999297 GACGAGAGGAGAGCCGGGT 62.999 68.421 5.45 5.45 39.96 5.28
1011 3710 3.213402 GACGAGAGGAGAGCCGGG 61.213 72.222 2.18 0.00 39.96 5.73
1014 3713 4.244802 CGCGACGAGAGGAGAGCC 62.245 72.222 0.00 0.00 0.00 4.70
1015 3714 3.443261 GACGCGACGAGAGGAGAGC 62.443 68.421 15.93 0.00 0.00 4.09
1017 3716 2.818714 GGACGCGACGAGAGGAGA 60.819 66.667 15.93 0.00 0.00 3.71
1018 3717 2.820479 AGGACGCGACGAGAGGAG 60.820 66.667 15.93 0.00 0.00 3.69
1019 3718 3.125573 CAGGACGCGACGAGAGGA 61.126 66.667 15.93 0.00 0.00 3.71
1021 3720 2.202362 CACAGGACGCGACGAGAG 60.202 66.667 15.93 0.00 0.00 3.20
1023 3722 1.989966 ATACCACAGGACGCGACGAG 61.990 60.000 15.93 5.08 0.00 4.18
1323 5515 3.394836 GAGAGCCTTGCGGGGAGT 61.395 66.667 0.00 0.00 35.12 3.85
1389 5581 3.125573 CTCCGCCGTCTCGTCAGA 61.126 66.667 0.00 0.00 0.00 3.27
1390 5582 4.838486 GCTCCGCCGTCTCGTCAG 62.838 72.222 0.00 0.00 0.00 3.51
1734 6037 4.163458 ACACCTTGAGGAACTGACACTAAA 59.837 41.667 3.59 0.00 41.55 1.85
1735 6038 3.709653 ACACCTTGAGGAACTGACACTAA 59.290 43.478 3.59 0.00 41.55 2.24
1771 6080 8.181904 ACAAAGTCAATCCAGTTCAACATTAT 57.818 30.769 0.00 0.00 0.00 1.28
1777 6086 5.129634 TGCTACAAAGTCAATCCAGTTCAA 58.870 37.500 0.00 0.00 0.00 2.69
1782 6091 9.643693 AAATAAAATGCTACAAAGTCAATCCAG 57.356 29.630 0.00 0.00 0.00 3.86
1826 6135 8.740123 TTCTTCAGGTTTAGTACAAAATGTGA 57.260 30.769 0.00 0.00 0.00 3.58
1881 6202 5.408299 GGGCAGAAACACAAATTGATTTACC 59.592 40.000 0.00 3.35 0.00 2.85
1899 6220 1.064758 ACTTGTGTGTCAAAGGGCAGA 60.065 47.619 0.00 0.00 35.48 4.26
1938 6292 5.631512 GGATAGATATCGTCTTGCAACAGAC 59.368 44.000 8.27 8.27 40.02 3.51
1949 6303 8.247562 AGTTTGCATCTTAGGATAGATATCGTC 58.752 37.037 0.00 0.03 33.17 4.20
2010 6365 1.623811 ACCTCAGTTCCACGCACTAAT 59.376 47.619 0.00 0.00 0.00 1.73
2082 6440 6.281405 AGAACTAATACCAATAACCTGAGCG 58.719 40.000 0.00 0.00 0.00 5.03
2099 6458 5.551233 AGCAATGCACAACTAGAGAACTAA 58.449 37.500 8.35 0.00 0.00 2.24
2146 6505 6.543465 TCTGCAGTAACTAGTAAGCGGTAATA 59.457 38.462 14.67 0.00 0.00 0.98
2151 6510 3.777465 TCTGCAGTAACTAGTAAGCGG 57.223 47.619 14.67 3.62 0.00 5.52
2167 6526 3.181493 CCATGTAGGAACAGCAAATCTGC 60.181 47.826 0.00 0.00 44.80 4.26
2200 6562 6.983906 TCATAATGTGCTCTCCTCAGAATA 57.016 37.500 0.00 0.00 0.00 1.75
2231 6593 6.188400 AGTTGCTAGCTTTCTAATTTCAGC 57.812 37.500 17.23 0.00 0.00 4.26
2242 6604 8.752005 TCCATTCAATTATAGTTGCTAGCTTT 57.248 30.769 17.23 3.89 0.00 3.51
2246 6608 9.956720 CCTTTTCCATTCAATTATAGTTGCTAG 57.043 33.333 3.19 0.00 0.00 3.42
2258 6623 6.488683 TCAGAACGTAACCTTTTCCATTCAAT 59.511 34.615 0.00 0.00 0.00 2.57
2380 6754 1.083706 AGGGCTCCTGATGTTCCCT 59.916 57.895 0.00 0.00 42.25 4.20
2471 6885 5.945310 AGGCCAGCTTGATTGAGATTAATA 58.055 37.500 5.01 0.00 0.00 0.98
2476 6890 4.349048 TGTATAGGCCAGCTTGATTGAGAT 59.651 41.667 5.01 0.00 0.00 2.75
2481 6895 2.485479 CCGTGTATAGGCCAGCTTGATT 60.485 50.000 5.01 0.00 0.00 2.57
2556 6986 3.375699 GAAGGAGAAGTGGGATCTACCA 58.624 50.000 0.00 0.00 41.20 3.25
2558 6988 3.648739 AGGAAGGAGAAGTGGGATCTAC 58.351 50.000 0.00 0.00 0.00 2.59
2559 6989 4.290942 GAAGGAAGGAGAAGTGGGATCTA 58.709 47.826 0.00 0.00 0.00 1.98
2561 6991 2.171659 GGAAGGAAGGAGAAGTGGGATC 59.828 54.545 0.00 0.00 0.00 3.36
2562 6992 2.200955 GGAAGGAAGGAGAAGTGGGAT 58.799 52.381 0.00 0.00 0.00 3.85
2563 6993 1.132527 TGGAAGGAAGGAGAAGTGGGA 60.133 52.381 0.00 0.00 0.00 4.37
2566 6996 3.051081 CTGTGGAAGGAAGGAGAAGTG 57.949 52.381 0.00 0.00 0.00 3.16
2615 7046 1.358787 TCCCCAATGCCAGAAGATGTT 59.641 47.619 0.00 0.00 0.00 2.71
2616 7047 1.002069 TCCCCAATGCCAGAAGATGT 58.998 50.000 0.00 0.00 0.00 3.06
2693 7124 2.433604 CTCATCCTAGAGCTTCTGCCAA 59.566 50.000 0.00 0.00 40.80 4.52
2746 7177 0.037447 AGAGGCTGGGTTGCTCTTTC 59.963 55.000 0.00 0.00 0.00 2.62
2752 7183 0.253044 TATGTGAGAGGCTGGGTTGC 59.747 55.000 0.00 0.00 0.00 4.17
2755 7186 1.198713 CTGTATGTGAGAGGCTGGGT 58.801 55.000 0.00 0.00 0.00 4.51
2815 7312 5.189928 TGAAGGAGAAGTGCAGTTTTAACA 58.810 37.500 8.48 2.54 0.00 2.41
2843 7342 5.310409 TGACCTGAAGATTTGGAGAGTTT 57.690 39.130 0.00 0.00 0.00 2.66
2847 7346 6.373005 TGTAATGACCTGAAGATTTGGAGA 57.627 37.500 0.00 0.00 0.00 3.71
2910 7457 1.827969 AGCCTGCAACTCTTACTCGAT 59.172 47.619 0.00 0.00 0.00 3.59
2911 7458 1.067565 CAGCCTGCAACTCTTACTCGA 60.068 52.381 0.00 0.00 0.00 4.04
2973 7520 4.761739 AGGACGAAATTGACATGACATGTT 59.238 37.500 21.66 5.98 45.03 2.71
2976 7523 3.941483 GGAGGACGAAATTGACATGACAT 59.059 43.478 0.00 0.00 0.00 3.06
2977 7524 3.244387 TGGAGGACGAAATTGACATGACA 60.244 43.478 0.00 0.00 0.00 3.58
2978 7525 3.334691 TGGAGGACGAAATTGACATGAC 58.665 45.455 0.00 0.00 0.00 3.06
2979 7526 3.694043 TGGAGGACGAAATTGACATGA 57.306 42.857 0.00 0.00 0.00 3.07
2992 7583 6.502136 CTTCAAAGGATTAACTTGGAGGAC 57.498 41.667 0.00 0.00 31.14 3.85
3023 7614 1.488393 GATCAGGGGAGGAAAGTGGAG 59.512 57.143 0.00 0.00 0.00 3.86
3237 7891 2.418368 TTGCGGTGAAGATGGCTATT 57.582 45.000 0.00 0.00 0.00 1.73
3317 8116 2.163818 TCGTAAGCTGGGTGAAACTG 57.836 50.000 0.00 0.00 34.57 3.16
3335 8985 1.363807 GCACAGGGGCAAGTGTTTC 59.636 57.895 5.36 0.00 38.02 2.78
3402 9052 5.456763 GCCAATTAATCCCTACTCATCACCT 60.457 44.000 0.00 0.00 0.00 4.00
3427 9078 5.343307 AAATTCAGCTAAATGGCCGATTT 57.657 34.783 14.78 14.78 37.96 2.17
3466 9117 0.878961 GGCCATAGTTAACCTCGCGG 60.879 60.000 6.13 0.00 0.00 6.46
3469 9120 5.407407 AGATATGGCCATAGTTAACCTCG 57.593 43.478 28.58 0.00 0.00 4.63
3481 9132 7.121064 AGCCTAGGATATATAGATATGGCCA 57.879 40.000 14.75 8.56 35.43 5.36
3517 9168 5.551233 TCTTTAGACACTTAGTGCATTGCT 58.449 37.500 12.80 5.12 36.98 3.91
3524 9175 6.820656 AGGATTGCATCTTTAGACACTTAGTG 59.179 38.462 11.21 11.21 39.75 2.74
3539 9190 4.187694 GCTATGTAGCCTAGGATTGCATC 58.812 47.826 14.75 0.56 43.39 3.91
3652 9303 1.391157 TTTCAGCGCAAAACTGGCCT 61.391 50.000 11.47 0.00 35.78 5.19
3706 9357 3.969976 AGCCTATTTATCAGCTGTCAGGA 59.030 43.478 14.67 0.00 33.41 3.86
3836 9494 4.926238 GGATAAGAGCACAGTTCCATATCG 59.074 45.833 0.00 0.00 0.00 2.92
3837 9495 5.698545 GTGGATAAGAGCACAGTTCCATATC 59.301 44.000 0.00 0.00 35.82 1.63
3840 9506 3.264193 TGTGGATAAGAGCACAGTTCCAT 59.736 43.478 0.00 0.00 35.82 3.41
3847 9513 2.234661 CTCTGGTGTGGATAAGAGCACA 59.765 50.000 0.00 0.00 33.88 4.57
4005 9686 1.177401 GGAGGTTGAAGCCATGGAAC 58.823 55.000 18.40 10.83 0.00 3.62
4066 10787 3.447586 GGGGCTTAACTGGGATTCTTTTC 59.552 47.826 0.00 0.00 0.00 2.29
4111 10832 1.347707 TCACTTCAATTCCCTGCTCGT 59.652 47.619 0.00 0.00 0.00 4.18
4137 10858 2.501316 TGATGCTAAAGCTCAGGTGCTA 59.499 45.455 3.26 0.00 43.24 3.49
4230 10951 5.164070 ACCACAAAAGTTTTTCGCGTTAAAC 60.164 36.000 22.21 22.21 35.10 2.01
4253 10974 3.949754 TGGATCAAATCTGGAGATGCAAC 59.050 43.478 0.00 0.00 37.21 4.17
4276 10997 6.161855 TGGCGTCAGAGATCTTGTATTATT 57.838 37.500 0.00 0.00 0.00 1.40
4353 11075 7.568199 GCTATTTGCTAAGGAATGAAACCTA 57.432 36.000 0.00 0.00 36.30 3.08
4416 11228 3.782523 TCAGAAAGGAGGTAGCCAATGAT 59.217 43.478 0.00 0.00 0.00 2.45
4480 11293 1.467734 GCTGTCAAGAACTGCTCATGG 59.532 52.381 0.00 0.00 46.21 3.66
4504 11317 4.437930 GGATGCTGTAAAGATTCTGCACAC 60.438 45.833 0.00 0.00 40.19 3.82
4547 13845 6.950619 AGGGCAGTGATAAGATTCTTTTTCTT 59.049 34.615 3.86 0.00 37.25 2.52
4621 13935 4.279145 TCCTTCGACTAGAATGCCTACTT 58.721 43.478 0.00 0.00 38.34 2.24
4690 14023 3.266636 TCGTCTTCAAAACTGCTGTTGA 58.733 40.909 9.95 1.86 36.39 3.18
4731 14067 2.607750 GGTGCTGAGGTCCTGGGA 60.608 66.667 0.00 0.00 0.00 4.37
4767 14106 4.583073 ACGCCTTCAAGAAACTAAATTGGT 59.417 37.500 0.00 0.00 0.00 3.67
4808 14148 4.754618 TCGCTACAGAAATTTTTCTCAGCA 59.245 37.500 23.04 14.16 45.23 4.41
4845 14195 4.780815 TGAACATGAGAGTTGAACAACCT 58.219 39.130 13.07 10.18 42.06 3.50
4861 14211 1.018148 TTCACCGCGTTGTTGAACAT 58.982 45.000 4.92 0.00 31.78 2.71
4862 14212 0.097325 GTTCACCGCGTTGTTGAACA 59.903 50.000 23.87 0.00 38.80 3.18
4863 14213 0.097325 TGTTCACCGCGTTGTTGAAC 59.903 50.000 22.84 22.84 39.24 3.18
4865 14215 0.803117 TTTGTTCACCGCGTTGTTGA 59.197 45.000 4.92 0.00 0.00 3.18
4866 14216 0.911184 GTTTGTTCACCGCGTTGTTG 59.089 50.000 4.92 0.00 0.00 3.33
4918 14312 1.301716 GTCGCCTCTGGTTGCTGAA 60.302 57.895 0.00 0.00 0.00 3.02
4919 14313 1.830587 ATGTCGCCTCTGGTTGCTGA 61.831 55.000 0.00 0.00 0.00 4.26
4966 14368 1.376609 CGGGGAGTATTGTGCCTTGC 61.377 60.000 0.00 0.00 0.00 4.01
5010 14412 0.249238 GCAAAACCATCAACCACGCA 60.249 50.000 0.00 0.00 0.00 5.24
5051 14453 0.527385 CACCCGTGTGCAAAACCAAG 60.527 55.000 0.00 0.00 35.31 3.61
5053 14455 2.418910 CCACCCGTGTGCAAAACCA 61.419 57.895 0.00 0.00 41.35 3.67
5055 14457 0.955905 ATACCACCCGTGTGCAAAAC 59.044 50.000 0.00 0.00 41.35 2.43
5059 14461 0.108774 TGAAATACCACCCGTGTGCA 59.891 50.000 0.00 0.00 41.35 4.57
5060 14462 1.068816 GTTGAAATACCACCCGTGTGC 60.069 52.381 0.00 0.00 41.35 4.57
5087 14490 1.719378 AGAGTCAGGAGGGAAGAGGAA 59.281 52.381 0.00 0.00 0.00 3.36
5116 14586 2.755439 ATAGGATGAGGCGGAGGGGG 62.755 65.000 0.00 0.00 0.00 5.40
5139 14609 1.619332 GGATTCCGGGATAGGTCACTC 59.381 57.143 0.00 0.00 0.00 3.51
5147 14617 2.371841 CACAGGATTGGATTCCGGGATA 59.628 50.000 0.00 0.00 40.94 2.59
5249 14886 5.449553 TCACTGCTATTCAGAGGTGATAGA 58.550 41.667 0.00 0.00 45.72 1.98
5352 14996 5.065988 GCTTCCAACCAAGAATTAATCGCTA 59.934 40.000 0.00 0.00 0.00 4.26
5353 14997 4.142381 GCTTCCAACCAAGAATTAATCGCT 60.142 41.667 0.00 0.00 0.00 4.93
5426 15070 8.303156 TGTCAATTCAAAAGAAGAAACAAGTCA 58.697 29.630 0.00 0.00 0.00 3.41
5537 15215 6.097554 CAGTACCATGTCCTAGTTTCTCTCAT 59.902 42.308 0.00 0.00 0.00 2.90
5562 15240 9.046296 CAAACTGAATACCTGTACTCCAATATC 57.954 37.037 0.00 0.00 0.00 1.63
5616 15297 4.212070 AGAGGGAAGAGCTTGATAGGAT 57.788 45.455 0.00 0.00 0.00 3.24
5643 15325 1.052124 AGTTGAGTCGGGTGGTTGGA 61.052 55.000 0.00 0.00 0.00 3.53
5706 15388 3.002348 GGGAGTTGTCAAAGACGTTTCAG 59.998 47.826 0.00 0.00 34.95 3.02
5766 15905 1.391933 ATACTGACGCATCCGCTGGA 61.392 55.000 0.00 0.00 38.22 3.86
5778 15917 6.018343 GGCTTTGCTTCTTCTATGATACTGAC 60.018 42.308 0.00 0.00 0.00 3.51
5823 15962 3.547746 GAGGTGTTGTAACTGGTTTCCA 58.452 45.455 0.00 0.00 0.00 3.53
5957 16096 0.468226 AGAAGGTTTGTGACGAGGCA 59.532 50.000 0.00 0.00 0.00 4.75
5958 16097 0.868406 CAGAAGGTTTGTGACGAGGC 59.132 55.000 0.00 0.00 0.00 4.70
5960 16099 3.717707 TCTTCAGAAGGTTTGTGACGAG 58.282 45.455 10.42 0.00 32.13 4.18
5961 16100 3.812156 TCTTCAGAAGGTTTGTGACGA 57.188 42.857 10.42 0.00 32.13 4.20
5962 16101 3.002348 GGTTCTTCAGAAGGTTTGTGACG 59.998 47.826 10.42 0.00 32.13 4.35
5963 16102 3.945285 TGGTTCTTCAGAAGGTTTGTGAC 59.055 43.478 10.42 0.00 32.13 3.67
5964 16103 3.945285 GTGGTTCTTCAGAAGGTTTGTGA 59.055 43.478 10.42 0.00 34.27 3.58
5965 16104 3.694072 TGTGGTTCTTCAGAAGGTTTGTG 59.306 43.478 10.42 0.00 34.27 3.33
5966 16105 3.694566 GTGTGGTTCTTCAGAAGGTTTGT 59.305 43.478 10.42 0.00 34.27 2.83
5967 16106 3.242739 CGTGTGGTTCTTCAGAAGGTTTG 60.243 47.826 10.42 0.00 34.27 2.93
6001 16140 3.005367 TGACATAGTCTTCAACAGCGTGA 59.995 43.478 0.00 0.00 33.15 4.35
6003 16142 3.660501 TGACATAGTCTTCAACAGCGT 57.339 42.857 0.00 0.00 33.15 5.07
6026 16165 3.479269 CGAACGGCGGTCTTGCTC 61.479 66.667 23.89 0.00 36.03 4.26
6098 16249 6.027025 TGGATACCTGACCTAAGTACAGAT 57.973 41.667 0.00 0.00 34.07 2.90
6105 16256 6.548321 AGATAGACTGGATACCTGACCTAAG 58.452 44.000 0.00 0.00 0.00 2.18
6107 16258 6.467484 GGAAGATAGACTGGATACCTGACCTA 60.467 46.154 0.00 0.00 0.00 3.08
6116 16267 4.493618 CTTGGGGGAAGATAGACTGGATA 58.506 47.826 0.00 0.00 32.82 2.59
6176 16327 2.681976 CGGAATTCTTCTGCTGGGATGT 60.682 50.000 5.23 0.00 0.00 3.06
6197 16349 8.066595 CAGATTTTCTCCGAATGTTGATGTATC 58.933 37.037 0.00 0.00 0.00 2.24
6262 16452 0.757561 GCCTACACCCTCCTCTCTCC 60.758 65.000 0.00 0.00 0.00 3.71
6264 16454 0.032615 CTGCCTACACCCTCCTCTCT 60.033 60.000 0.00 0.00 0.00 3.10
6305 16505 2.912771 TCATCCGGATTTTATGCACGT 58.087 42.857 16.19 0.00 0.00 4.49
6352 16849 6.647895 ACCAGTATCAAAAACTACTAACACCG 59.352 38.462 0.00 0.00 0.00 4.94
6354 16851 8.597662 TCACCAGTATCAAAAACTACTAACAC 57.402 34.615 0.00 0.00 0.00 3.32
6372 18103 4.162320 CGGCCCTATATATCAATCACCAGT 59.838 45.833 0.00 0.00 0.00 4.00
6423 18157 6.019779 AGCAATTTACATTTTAGTCGGCAA 57.980 33.333 0.00 0.00 0.00 4.52
6424 18158 5.637006 AGCAATTTACATTTTAGTCGGCA 57.363 34.783 0.00 0.00 0.00 5.69
6530 18291 4.281688 CACCATGTTCCTGGAGAAACAAAT 59.718 41.667 3.96 0.00 39.73 2.32
6826 18598 3.888323 TCATGAGCAAGTTTACCAGCAAA 59.112 39.130 0.00 0.00 0.00 3.68
6880 18653 5.349817 AGTTGATACAATGAAGAGAAGCACG 59.650 40.000 0.00 0.00 0.00 5.34
7062 18871 1.222936 CGGAGGGAAAGCAGAGCAT 59.777 57.895 0.00 0.00 0.00 3.79
7134 18948 6.582636 TCTGTTCACTACTTCAGTTGTTCAT 58.417 36.000 0.00 0.00 34.26 2.57
7135 18949 5.972935 TCTGTTCACTACTTCAGTTGTTCA 58.027 37.500 0.00 0.00 34.26 3.18
7138 18952 5.918608 ACATCTGTTCACTACTTCAGTTGT 58.081 37.500 0.00 0.00 36.59 3.32
7169 18986 0.897621 CAAACCCAAGGGATTCAGCC 59.102 55.000 13.15 0.00 38.96 4.85
7216 19034 6.513180 TCCATCTTGATAACCATCTTACGAC 58.487 40.000 0.00 0.00 31.93 4.34
7254 19075 3.670055 CGACAAGTTTGTGGCATCAAATC 59.330 43.478 14.98 9.55 42.43 2.17
7259 19081 2.223479 ACAACGACAAGTTTGTGGCATC 60.223 45.455 1.62 0.00 42.02 3.91
7263 21556 2.187351 CCACAACGACAAGTTTGTGG 57.813 50.000 17.56 17.56 45.76 4.17
7276 21569 5.995897 ACTTCCATCTTGTAGTTACCACAAC 59.004 40.000 0.00 0.00 32.64 3.32
7317 21624 7.914427 TTCATAACATGGACCTCTACTACAT 57.086 36.000 0.00 0.00 0.00 2.29
7318 21625 7.399191 AGTTTCATAACATGGACCTCTACTACA 59.601 37.037 0.00 0.00 36.70 2.74
7319 21626 7.783042 AGTTTCATAACATGGACCTCTACTAC 58.217 38.462 0.00 0.00 36.70 2.73
7320 21627 7.973048 AGTTTCATAACATGGACCTCTACTA 57.027 36.000 0.00 0.00 36.70 1.82
7328 21639 6.183360 CCCCATTGTAGTTTCATAACATGGAC 60.183 42.308 0.00 0.00 36.73 4.02
7396 21720 9.796120 TTTATTTTCTTCATTCGAAACACAACT 57.204 25.926 0.00 0.00 30.72 3.16
7417 21745 7.329226 CGGTGATTTCTGTGCAAAGATTTTATT 59.671 33.333 7.60 0.00 0.00 1.40
7418 21746 6.808212 CGGTGATTTCTGTGCAAAGATTTTAT 59.192 34.615 7.60 0.00 0.00 1.40
7419 21747 6.016693 TCGGTGATTTCTGTGCAAAGATTTTA 60.017 34.615 7.60 0.00 0.00 1.52
7426 21900 2.286713 CGTTCGGTGATTTCTGTGCAAA 60.287 45.455 0.00 0.00 0.00 3.68
7548 22179 1.000896 GGGATCAAGTGTGGGGTGG 60.001 63.158 0.00 0.00 0.00 4.61
7549 22180 0.609131 GTGGGATCAAGTGTGGGGTG 60.609 60.000 0.00 0.00 0.00 4.61
7550 22181 0.772124 AGTGGGATCAAGTGTGGGGT 60.772 55.000 0.00 0.00 0.00 4.95
7593 22225 0.106569 GCCCATGACCATGACCATGA 60.107 55.000 21.28 0.00 41.88 3.07
7594 22226 1.449726 CGCCCATGACCATGACCATG 61.450 60.000 11.28 15.84 41.20 3.66
7595 22227 1.152902 CGCCCATGACCATGACCAT 60.153 57.895 11.28 0.00 41.20 3.55
7640 22279 2.418197 GGATATCCCAATGCATGCATGC 60.418 50.000 38.71 38.71 43.77 4.06
7641 22280 3.096852 AGGATATCCCAATGCATGCATG 58.903 45.455 32.79 24.07 34.97 4.06
7642 22281 3.011369 AGAGGATATCCCAATGCATGCAT 59.989 43.478 27.46 27.46 37.41 3.96
7748 22412 3.973267 GACGCAGGCGACAGAGGAC 62.973 68.421 21.62 0.00 42.83 3.85
7814 22516 2.447714 GCTCCTCCCCCACCATCTC 61.448 68.421 0.00 0.00 0.00 2.75
7835 22537 3.716006 CGTTGTCGTGCAGCCCTG 61.716 66.667 0.00 0.00 0.00 4.45
7840 22542 3.027170 GATGGGCGTTGTCGTGCAG 62.027 63.158 0.00 0.00 39.49 4.41
7847 22549 2.361104 ATTGGCGATGGGCGTTGT 60.361 55.556 0.00 0.00 44.92 3.32
7882 24504 2.111669 CTGTGACCACCTGCAGCA 59.888 61.111 8.66 0.00 0.00 4.41
7885 24507 2.111669 CAGCTGTGACCACCTGCA 59.888 61.111 5.25 0.00 34.03 4.41
7902 24526 2.293122 CACCAGATGATCTCGTCCTCTC 59.707 54.545 0.00 0.00 30.45 3.20
7903 24527 2.305928 CACCAGATGATCTCGTCCTCT 58.694 52.381 0.00 0.00 32.75 3.69
7930 24554 3.184683 GACTTGCTCGCTCGGCAG 61.185 66.667 5.80 0.00 40.90 4.85
7935 24572 1.446966 GACCCAGACTTGCTCGCTC 60.447 63.158 0.00 0.00 0.00 5.03
7936 24573 1.910772 AGACCCAGACTTGCTCGCT 60.911 57.895 0.00 0.00 0.00 4.93
7938 24575 1.079543 CCAGACCCAGACTTGCTCG 60.080 63.158 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.