Multiple sequence alignment - TraesCS5A01G445500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G445500 chr5A 100.000 2435 0 0 1 2435 625421157 625418723 0 4497
1 TraesCS5A01G445500 chr5B 98.519 1013 12 1 1423 2435 201784789 201785798 0 1784
2 TraesCS5A01G445500 chr5B 98.223 1013 18 0 1423 2435 175754583 175755595 0 1772
3 TraesCS5A01G445500 chr5B 95.271 1015 43 4 1423 2435 282779175 282778164 0 1604
4 TraesCS5A01G445500 chr1B 98.473 982 14 1 1 981 477693732 477692751 0 1729
5 TraesCS5A01G445500 chr1B 98.269 982 16 1 1 981 629043808 629044789 0 1718
6 TraesCS5A01G445500 chr1B 97.862 982 20 1 1 981 65719248 65718267 0 1696
7 TraesCS5A01G445500 chr6B 98.371 982 15 1 1 981 396875605 396876586 0 1724
8 TraesCS5A01G445500 chr6B 95.949 1012 35 4 1424 2435 99629039 99630044 0 1637
9 TraesCS5A01G445500 chr2A 98.371 982 15 1 1 981 187720693 187719712 0 1724
10 TraesCS5A01G445500 chr2A 96.245 1012 31 5 1424 2435 616001355 616002359 0 1652
11 TraesCS5A01G445500 chr2A 99.773 441 1 0 982 1422 726906927 726906487 0 809
12 TraesCS5A01G445500 chr6A 98.269 982 16 1 1 981 324777221 324776240 0 1718
13 TraesCS5A01G445500 chr6A 98.167 982 17 1 1 981 473793907 473792926 0 1712
14 TraesCS5A01G445500 chr3B 98.169 983 16 2 1 981 689037599 689038581 0 1714
15 TraesCS5A01G445500 chr3B 97.313 1005 26 1 1423 2427 445185375 445186378 0 1705
16 TraesCS5A01G445500 chr7B 96.922 1007 29 2 1423 2427 80199503 80198497 0 1687
17 TraesCS5A01G445500 chr7B 96.425 1007 34 2 1423 2427 80207231 80206225 0 1659
18 TraesCS5A01G445500 chr7B 99.773 441 1 0 982 1422 662725932 662726372 0 809
19 TraesCS5A01G445500 chr7B 99.546 441 2 0 982 1422 663099897 663099457 0 804
20 TraesCS5A01G445500 chr4B 97.459 984 18 7 1 981 769367 768388 0 1672
21 TraesCS5A01G445500 chr2B 95.276 1016 45 2 1423 2435 550838416 550837401 0 1607
22 TraesCS5A01G445500 chr6D 99.773 441 1 0 982 1422 389246294 389245854 0 809
23 TraesCS5A01G445500 chr5D 99.773 441 1 0 982 1422 503244800 503245240 0 809
24 TraesCS5A01G445500 chr2D 99.773 441 1 0 982 1422 591984137 591984577 0 809
25 TraesCS5A01G445500 chr1A 99.773 441 1 0 982 1422 526830551 526830991 0 809
26 TraesCS5A01G445500 chr7D 99.546 441 1 1 982 1422 231554897 231554458 0 802
27 TraesCS5A01G445500 chr3A 99.546 441 1 1 982 1422 66005604 66005165 0 802


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G445500 chr5A 625418723 625421157 2434 True 4497 4497 100.000 1 2435 1 chr5A.!!$R1 2434
1 TraesCS5A01G445500 chr5B 201784789 201785798 1009 False 1784 1784 98.519 1423 2435 1 chr5B.!!$F2 1012
2 TraesCS5A01G445500 chr5B 175754583 175755595 1012 False 1772 1772 98.223 1423 2435 1 chr5B.!!$F1 1012
3 TraesCS5A01G445500 chr5B 282778164 282779175 1011 True 1604 1604 95.271 1423 2435 1 chr5B.!!$R1 1012
4 TraesCS5A01G445500 chr1B 477692751 477693732 981 True 1729 1729 98.473 1 981 1 chr1B.!!$R2 980
5 TraesCS5A01G445500 chr1B 629043808 629044789 981 False 1718 1718 98.269 1 981 1 chr1B.!!$F1 980
6 TraesCS5A01G445500 chr1B 65718267 65719248 981 True 1696 1696 97.862 1 981 1 chr1B.!!$R1 980
7 TraesCS5A01G445500 chr6B 396875605 396876586 981 False 1724 1724 98.371 1 981 1 chr6B.!!$F2 980
8 TraesCS5A01G445500 chr6B 99629039 99630044 1005 False 1637 1637 95.949 1424 2435 1 chr6B.!!$F1 1011
9 TraesCS5A01G445500 chr2A 187719712 187720693 981 True 1724 1724 98.371 1 981 1 chr2A.!!$R1 980
10 TraesCS5A01G445500 chr2A 616001355 616002359 1004 False 1652 1652 96.245 1424 2435 1 chr2A.!!$F1 1011
11 TraesCS5A01G445500 chr6A 324776240 324777221 981 True 1718 1718 98.269 1 981 1 chr6A.!!$R1 980
12 TraesCS5A01G445500 chr6A 473792926 473793907 981 True 1712 1712 98.167 1 981 1 chr6A.!!$R2 980
13 TraesCS5A01G445500 chr3B 689037599 689038581 982 False 1714 1714 98.169 1 981 1 chr3B.!!$F2 980
14 TraesCS5A01G445500 chr3B 445185375 445186378 1003 False 1705 1705 97.313 1423 2427 1 chr3B.!!$F1 1004
15 TraesCS5A01G445500 chr7B 80198497 80199503 1006 True 1687 1687 96.922 1423 2427 1 chr7B.!!$R1 1004
16 TraesCS5A01G445500 chr7B 80206225 80207231 1006 True 1659 1659 96.425 1423 2427 1 chr7B.!!$R2 1004
17 TraesCS5A01G445500 chr4B 768388 769367 979 True 1672 1672 97.459 1 981 1 chr4B.!!$R1 980
18 TraesCS5A01G445500 chr2B 550837401 550838416 1015 True 1607 1607 95.276 1423 2435 1 chr2B.!!$R1 1012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 996 0.396435 ACGTTGTCTCATCCAAGGCA 59.604 50.0 0.0 0.0 32.43 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2002 5.298026 TCGTCAAATCAAATCAGAACCAACA 59.702 36.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 6.068010 TGTGGATTACCTTGTTGAAGACAAT 58.932 36.000 0.00 0.00 46.58 2.71
332 333 1.527311 GCGTGGTCTCAAGAACTTGAC 59.473 52.381 12.40 5.70 43.90 3.18
365 366 7.656948 CACAATCATCAAGGTTTTACCAACATT 59.343 33.333 0.00 0.00 41.95 2.71
382 383 4.371624 ACATTTGTGTCAAGGATCCTGA 57.628 40.909 17.02 12.22 0.00 3.86
425 426 4.010667 TGAATGATGATGGATGATGCGA 57.989 40.909 0.00 0.00 0.00 5.10
446 447 5.095490 CGAATGCAAAAGAAGATAACACCC 58.905 41.667 0.00 0.00 0.00 4.61
610 613 2.853235 AAAGGTCGGACTTCGGAAAT 57.147 45.000 8.23 0.00 39.77 2.17
805 809 3.949586 TCCAAACCATCATATCTGCCA 57.050 42.857 0.00 0.00 0.00 4.92
971 975 4.397420 TGGTTCTGCTACAAACATGTGAT 58.603 39.130 0.00 0.00 0.00 3.06
981 985 3.876914 ACAAACATGTGATCACGTTGTCT 59.123 39.130 25.59 15.22 31.75 3.41
982 986 4.024893 ACAAACATGTGATCACGTTGTCTC 60.025 41.667 25.59 2.38 31.75 3.36
983 987 3.385193 ACATGTGATCACGTTGTCTCA 57.615 42.857 21.96 4.92 0.00 3.27
984 988 3.930336 ACATGTGATCACGTTGTCTCAT 58.070 40.909 21.96 6.84 0.00 2.90
985 989 3.928992 ACATGTGATCACGTTGTCTCATC 59.071 43.478 21.96 0.00 0.00 2.92
986 990 2.959516 TGTGATCACGTTGTCTCATCC 58.040 47.619 20.54 0.00 0.00 3.51
987 991 2.298729 TGTGATCACGTTGTCTCATCCA 59.701 45.455 20.54 0.00 0.00 3.41
988 992 3.244044 TGTGATCACGTTGTCTCATCCAA 60.244 43.478 20.54 0.00 0.00 3.53
989 993 3.369147 GTGATCACGTTGTCTCATCCAAG 59.631 47.826 10.69 0.00 0.00 3.61
990 994 2.455674 TCACGTTGTCTCATCCAAGG 57.544 50.000 0.00 0.00 34.69 3.61
991 995 0.798776 CACGTTGTCTCATCCAAGGC 59.201 55.000 0.00 0.00 32.43 4.35
992 996 0.396435 ACGTTGTCTCATCCAAGGCA 59.604 50.000 0.00 0.00 32.43 4.75
993 997 0.798776 CGTTGTCTCATCCAAGGCAC 59.201 55.000 0.00 0.00 28.68 5.01
994 998 1.877680 CGTTGTCTCATCCAAGGCACA 60.878 52.381 0.00 0.00 28.68 4.57
995 999 2.440409 GTTGTCTCATCCAAGGCACAT 58.560 47.619 0.00 0.00 28.68 3.21
996 1000 2.821969 GTTGTCTCATCCAAGGCACATT 59.178 45.455 0.00 0.00 28.68 2.71
997 1001 3.998913 TGTCTCATCCAAGGCACATTA 57.001 42.857 0.00 0.00 0.00 1.90
998 1002 3.877559 TGTCTCATCCAAGGCACATTAG 58.122 45.455 0.00 0.00 0.00 1.73
999 1003 2.615912 GTCTCATCCAAGGCACATTAGC 59.384 50.000 0.00 0.00 0.00 3.09
1000 1004 2.239402 TCTCATCCAAGGCACATTAGCA 59.761 45.455 0.00 0.00 35.83 3.49
1001 1005 3.117776 TCTCATCCAAGGCACATTAGCAT 60.118 43.478 0.00 0.00 35.83 3.79
1002 1006 2.953648 TCATCCAAGGCACATTAGCATG 59.046 45.455 0.00 0.00 35.83 4.06
1003 1007 1.766494 TCCAAGGCACATTAGCATGG 58.234 50.000 0.00 0.00 41.61 3.66
1004 1008 0.103572 CCAAGGCACATTAGCATGGC 59.896 55.000 0.00 0.00 41.52 4.40
1005 1009 0.248743 CAAGGCACATTAGCATGGCG 60.249 55.000 0.00 0.00 45.57 5.69
1006 1010 0.680921 AAGGCACATTAGCATGGCGT 60.681 50.000 0.00 0.00 45.57 5.68
1007 1011 0.180171 AGGCACATTAGCATGGCGTA 59.820 50.000 0.00 0.00 45.57 4.42
1008 1012 0.307760 GGCACATTAGCATGGCGTAC 59.692 55.000 0.00 0.00 34.27 3.67
1009 1013 1.299541 GCACATTAGCATGGCGTACT 58.700 50.000 0.00 0.00 34.27 2.73
1010 1014 1.261619 GCACATTAGCATGGCGTACTC 59.738 52.381 0.00 0.00 34.27 2.59
1011 1015 1.867233 CACATTAGCATGGCGTACTCC 59.133 52.381 0.00 0.00 34.27 3.85
1012 1016 1.762957 ACATTAGCATGGCGTACTCCT 59.237 47.619 3.08 0.00 34.27 3.69
1013 1017 2.224066 ACATTAGCATGGCGTACTCCTC 60.224 50.000 3.08 0.00 34.27 3.71
1014 1018 0.750850 TTAGCATGGCGTACTCCTCC 59.249 55.000 3.08 0.00 0.00 4.30
1015 1019 0.106167 TAGCATGGCGTACTCCTCCT 60.106 55.000 3.08 0.00 0.00 3.69
1016 1020 1.227380 GCATGGCGTACTCCTCCTG 60.227 63.158 3.08 0.00 0.00 3.86
1017 1021 1.961180 GCATGGCGTACTCCTCCTGT 61.961 60.000 3.08 0.00 0.00 4.00
1018 1022 0.537188 CATGGCGTACTCCTCCTGTT 59.463 55.000 3.08 0.00 0.00 3.16
1019 1023 1.066143 CATGGCGTACTCCTCCTGTTT 60.066 52.381 3.08 0.00 0.00 2.83
1020 1024 0.320374 TGGCGTACTCCTCCTGTTTG 59.680 55.000 3.08 0.00 0.00 2.93
1021 1025 0.606604 GGCGTACTCCTCCTGTTTGA 59.393 55.000 0.00 0.00 0.00 2.69
1022 1026 1.001633 GGCGTACTCCTCCTGTTTGAA 59.998 52.381 0.00 0.00 0.00 2.69
1023 1027 2.354805 GGCGTACTCCTCCTGTTTGAAT 60.355 50.000 0.00 0.00 0.00 2.57
1024 1028 2.930682 GCGTACTCCTCCTGTTTGAATC 59.069 50.000 0.00 0.00 0.00 2.52
1025 1029 3.179830 CGTACTCCTCCTGTTTGAATCG 58.820 50.000 0.00 0.00 0.00 3.34
1026 1030 2.770164 ACTCCTCCTGTTTGAATCGG 57.230 50.000 0.00 0.00 0.00 4.18
1027 1031 2.257207 ACTCCTCCTGTTTGAATCGGA 58.743 47.619 0.00 0.00 0.00 4.55
1028 1032 2.234908 ACTCCTCCTGTTTGAATCGGAG 59.765 50.000 0.00 0.00 42.09 4.63
1029 1033 2.234908 CTCCTCCTGTTTGAATCGGAGT 59.765 50.000 0.00 0.00 41.11 3.85
1030 1034 2.637872 TCCTCCTGTTTGAATCGGAGTT 59.362 45.455 0.00 0.00 41.11 3.01
1031 1035 3.072476 TCCTCCTGTTTGAATCGGAGTTT 59.928 43.478 0.00 0.00 41.11 2.66
1032 1036 3.189287 CCTCCTGTTTGAATCGGAGTTTG 59.811 47.826 0.00 0.00 41.11 2.93
1033 1037 4.065088 CTCCTGTTTGAATCGGAGTTTGA 58.935 43.478 0.00 0.00 38.54 2.69
1034 1038 4.456535 TCCTGTTTGAATCGGAGTTTGAA 58.543 39.130 0.00 0.00 0.00 2.69
1035 1039 4.884744 TCCTGTTTGAATCGGAGTTTGAAA 59.115 37.500 0.00 0.00 0.00 2.69
1036 1040 4.976116 CCTGTTTGAATCGGAGTTTGAAAC 59.024 41.667 0.00 0.00 0.00 2.78
1037 1041 4.927422 TGTTTGAATCGGAGTTTGAAACC 58.073 39.130 4.14 0.00 0.00 3.27
1038 1042 4.399618 TGTTTGAATCGGAGTTTGAAACCA 59.600 37.500 4.14 0.00 0.00 3.67
1039 1043 5.105716 TGTTTGAATCGGAGTTTGAAACCAA 60.106 36.000 4.14 0.00 0.00 3.67
1040 1044 5.584253 TTGAATCGGAGTTTGAAACCAAA 57.416 34.783 4.14 0.00 0.00 3.28
1052 1056 5.993748 TTGAAACCAAACAAACTTCTCCT 57.006 34.783 0.00 0.00 0.00 3.69
1053 1057 5.576447 TGAAACCAAACAAACTTCTCCTC 57.424 39.130 0.00 0.00 0.00 3.71
1054 1058 5.013547 TGAAACCAAACAAACTTCTCCTCA 58.986 37.500 0.00 0.00 0.00 3.86
1055 1059 5.125417 TGAAACCAAACAAACTTCTCCTCAG 59.875 40.000 0.00 0.00 0.00 3.35
1056 1060 3.555966 ACCAAACAAACTTCTCCTCAGG 58.444 45.455 0.00 0.00 0.00 3.86
1057 1061 3.202151 ACCAAACAAACTTCTCCTCAGGA 59.798 43.478 0.00 0.00 0.00 3.86
1070 1074 1.274712 CTCAGGAGGATAGATGGGGC 58.725 60.000 0.00 0.00 0.00 5.80
1071 1075 0.542938 TCAGGAGGATAGATGGGGCG 60.543 60.000 0.00 0.00 0.00 6.13
1072 1076 0.542938 CAGGAGGATAGATGGGGCGA 60.543 60.000 0.00 0.00 0.00 5.54
1073 1077 0.415429 AGGAGGATAGATGGGGCGAT 59.585 55.000 0.00 0.00 0.00 4.58
1074 1078 1.203364 AGGAGGATAGATGGGGCGATT 60.203 52.381 0.00 0.00 0.00 3.34
1075 1079 1.208293 GGAGGATAGATGGGGCGATTC 59.792 57.143 0.00 0.00 0.00 2.52
1076 1080 1.902508 GAGGATAGATGGGGCGATTCA 59.097 52.381 0.00 0.00 0.00 2.57
1077 1081 1.905215 AGGATAGATGGGGCGATTCAG 59.095 52.381 0.00 0.00 0.00 3.02
1078 1082 1.065854 GGATAGATGGGGCGATTCAGG 60.066 57.143 0.00 0.00 0.00 3.86
1079 1083 1.625818 GATAGATGGGGCGATTCAGGT 59.374 52.381 0.00 0.00 0.00 4.00
1080 1084 0.758734 TAGATGGGGCGATTCAGGTG 59.241 55.000 0.00 0.00 0.00 4.00
1081 1085 0.982852 AGATGGGGCGATTCAGGTGA 60.983 55.000 0.00 0.00 0.00 4.02
1082 1086 0.533755 GATGGGGCGATTCAGGTGAG 60.534 60.000 0.00 0.00 0.00 3.51
1083 1087 0.982852 ATGGGGCGATTCAGGTGAGA 60.983 55.000 0.00 0.00 0.00 3.27
1084 1088 0.982852 TGGGGCGATTCAGGTGAGAT 60.983 55.000 0.00 0.00 0.00 2.75
1085 1089 0.250081 GGGGCGATTCAGGTGAGATC 60.250 60.000 0.00 0.00 0.00 2.75
1086 1090 0.250081 GGGCGATTCAGGTGAGATCC 60.250 60.000 0.00 0.00 0.00 3.36
1087 1091 0.250081 GGCGATTCAGGTGAGATCCC 60.250 60.000 0.00 0.00 0.00 3.85
1088 1092 0.465705 GCGATTCAGGTGAGATCCCA 59.534 55.000 0.00 0.00 0.00 4.37
1089 1093 1.071385 GCGATTCAGGTGAGATCCCAT 59.929 52.381 0.00 0.00 0.00 4.00
1090 1094 2.763933 CGATTCAGGTGAGATCCCATG 58.236 52.381 0.00 0.00 0.00 3.66
1091 1095 2.103771 CGATTCAGGTGAGATCCCATGT 59.896 50.000 0.00 0.00 0.00 3.21
1092 1096 3.321968 CGATTCAGGTGAGATCCCATGTA 59.678 47.826 0.00 0.00 0.00 2.29
1093 1097 4.560311 CGATTCAGGTGAGATCCCATGTAG 60.560 50.000 0.00 0.00 0.00 2.74
1094 1098 3.688049 TCAGGTGAGATCCCATGTAGA 57.312 47.619 0.00 0.00 0.00 2.59
1095 1099 4.204792 TCAGGTGAGATCCCATGTAGAT 57.795 45.455 0.00 0.00 0.00 1.98
1096 1100 4.155709 TCAGGTGAGATCCCATGTAGATC 58.844 47.826 12.80 12.80 40.42 2.75
1107 1111 9.836179 AGATCCCATGTAGATCTAACTTTCTAT 57.164 33.333 18.99 0.00 46.76 1.98
1110 1114 9.434275 TCCCATGTAGATCTAACTTTCTATTCA 57.566 33.333 3.40 0.00 0.00 2.57
1111 1115 9.482627 CCCATGTAGATCTAACTTTCTATTCAC 57.517 37.037 3.40 0.00 0.00 3.18
1115 1119 9.175312 TGTAGATCTAACTTTCTATTCACTCGT 57.825 33.333 3.40 0.00 0.00 4.18
1116 1120 9.440784 GTAGATCTAACTTTCTATTCACTCGTG 57.559 37.037 3.40 0.00 0.00 4.35
1117 1121 7.484975 AGATCTAACTTTCTATTCACTCGTGG 58.515 38.462 0.00 0.00 0.00 4.94
1118 1122 5.962433 TCTAACTTTCTATTCACTCGTGGG 58.038 41.667 0.00 0.00 0.00 4.61
1119 1123 4.884668 AACTTTCTATTCACTCGTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
1120 1124 5.422214 AACTTTCTATTCACTCGTGGGAT 57.578 39.130 0.00 0.00 0.00 3.85
1121 1125 5.012328 ACTTTCTATTCACTCGTGGGATC 57.988 43.478 0.00 0.00 0.00 3.36
1122 1126 4.141914 ACTTTCTATTCACTCGTGGGATCC 60.142 45.833 1.92 1.92 0.00 3.36
1123 1127 1.954382 TCTATTCACTCGTGGGATCCG 59.046 52.381 5.45 0.00 0.00 4.18
1124 1128 1.000163 CTATTCACTCGTGGGATCCGG 60.000 57.143 5.45 0.00 0.00 5.14
1125 1129 1.686325 ATTCACTCGTGGGATCCGGG 61.686 60.000 5.45 0.00 0.00 5.73
1126 1130 4.530857 CACTCGTGGGATCCGGGC 62.531 72.222 5.45 0.00 0.00 6.13
1158 1162 2.681778 CCACCACGGCTCCTCTCT 60.682 66.667 0.00 0.00 0.00 3.10
1159 1163 2.286523 CCACCACGGCTCCTCTCTT 61.287 63.158 0.00 0.00 0.00 2.85
1160 1164 1.216710 CACCACGGCTCCTCTCTTC 59.783 63.158 0.00 0.00 0.00 2.87
1161 1165 1.077625 ACCACGGCTCCTCTCTTCT 59.922 57.895 0.00 0.00 0.00 2.85
1162 1166 0.968393 ACCACGGCTCCTCTCTTCTC 60.968 60.000 0.00 0.00 0.00 2.87
1163 1167 1.431440 CACGGCTCCTCTCTTCTCG 59.569 63.158 0.00 0.00 0.00 4.04
1164 1168 1.027255 CACGGCTCCTCTCTTCTCGA 61.027 60.000 0.00 0.00 0.00 4.04
1165 1169 0.746563 ACGGCTCCTCTCTTCTCGAG 60.747 60.000 5.93 5.93 41.30 4.04
1166 1170 0.462937 CGGCTCCTCTCTTCTCGAGA 60.463 60.000 12.08 12.08 46.32 4.04
1177 1181 6.567687 TCTCTTCTCGAGAATCCATACATC 57.432 41.667 27.19 0.00 45.55 3.06
1178 1182 5.475220 TCTCTTCTCGAGAATCCATACATCC 59.525 44.000 27.19 0.00 45.55 3.51
1179 1183 4.524714 TCTTCTCGAGAATCCATACATCCC 59.475 45.833 27.19 0.00 33.01 3.85
1180 1184 4.119556 TCTCGAGAATCCATACATCCCT 57.880 45.455 14.01 0.00 0.00 4.20
1181 1185 4.483950 TCTCGAGAATCCATACATCCCTT 58.516 43.478 14.01 0.00 0.00 3.95
1182 1186 5.641155 TCTCGAGAATCCATACATCCCTTA 58.359 41.667 14.01 0.00 0.00 2.69
1183 1187 6.256819 TCTCGAGAATCCATACATCCCTTAT 58.743 40.000 14.01 0.00 0.00 1.73
1184 1188 6.378564 TCTCGAGAATCCATACATCCCTTATC 59.621 42.308 14.01 0.00 0.00 1.75
1185 1189 6.016555 TCGAGAATCCATACATCCCTTATCA 58.983 40.000 0.00 0.00 0.00 2.15
1186 1190 6.153510 TCGAGAATCCATACATCCCTTATCAG 59.846 42.308 0.00 0.00 0.00 2.90
1187 1191 6.071108 CGAGAATCCATACATCCCTTATCAGT 60.071 42.308 0.00 0.00 0.00 3.41
1188 1192 7.013823 AGAATCCATACATCCCTTATCAGTG 57.986 40.000 0.00 0.00 0.00 3.66
1189 1193 6.560304 AGAATCCATACATCCCTTATCAGTGT 59.440 38.462 0.00 0.00 0.00 3.55
1190 1194 7.734865 AGAATCCATACATCCCTTATCAGTGTA 59.265 37.037 0.00 0.00 0.00 2.90
1191 1195 8.454859 AATCCATACATCCCTTATCAGTGTAT 57.545 34.615 0.00 0.00 36.67 2.29
1192 1196 7.244886 TCCATACATCCCTTATCAGTGTATG 57.755 40.000 13.89 13.89 46.01 2.39
1194 1198 7.244886 CATACATCCCTTATCAGTGTATGGA 57.755 40.000 13.29 0.00 44.23 3.41
1195 1199 5.815233 ACATCCCTTATCAGTGTATGGAG 57.185 43.478 0.00 0.00 0.00 3.86
1196 1200 5.467738 ACATCCCTTATCAGTGTATGGAGA 58.532 41.667 0.00 0.00 0.00 3.71
1197 1201 5.541868 ACATCCCTTATCAGTGTATGGAGAG 59.458 44.000 0.00 0.00 0.00 3.20
1198 1202 3.898123 TCCCTTATCAGTGTATGGAGAGC 59.102 47.826 0.00 0.00 0.00 4.09
1199 1203 3.900601 CCCTTATCAGTGTATGGAGAGCT 59.099 47.826 0.00 0.00 0.00 4.09
1200 1204 5.080337 CCCTTATCAGTGTATGGAGAGCTA 58.920 45.833 0.00 0.00 0.00 3.32
1201 1205 5.719085 CCCTTATCAGTGTATGGAGAGCTAT 59.281 44.000 0.00 0.00 0.00 2.97
1202 1206 6.127479 CCCTTATCAGTGTATGGAGAGCTATC 60.127 46.154 0.00 0.00 0.00 2.08
1203 1207 6.663093 CCTTATCAGTGTATGGAGAGCTATCT 59.337 42.308 8.50 0.00 38.98 1.98
1213 1217 2.340210 AGAGCTATCTCTCGAGCACA 57.660 50.000 7.81 0.00 46.32 4.57
1214 1218 2.221169 AGAGCTATCTCTCGAGCACAG 58.779 52.381 7.81 0.00 46.32 3.66
1215 1219 1.266718 GAGCTATCTCTCGAGCACAGG 59.733 57.143 7.81 0.00 41.36 4.00
1216 1220 1.028905 GCTATCTCTCGAGCACAGGT 58.971 55.000 7.81 0.00 38.62 4.00
1217 1221 1.407258 GCTATCTCTCGAGCACAGGTT 59.593 52.381 7.81 0.00 38.62 3.50
1218 1222 2.797792 GCTATCTCTCGAGCACAGGTTG 60.798 54.545 7.81 0.00 38.62 3.77
1219 1223 1.550327 ATCTCTCGAGCACAGGTTGA 58.450 50.000 7.81 0.00 0.00 3.18
1220 1224 0.884514 TCTCTCGAGCACAGGTTGAG 59.115 55.000 7.81 7.05 41.41 3.02
1221 1225 0.108898 CTCTCGAGCACAGGTTGAGG 60.109 60.000 7.81 2.02 40.70 3.86
1222 1226 0.827925 TCTCGAGCACAGGTTGAGGT 60.828 55.000 7.81 0.00 40.70 3.85
1223 1227 0.034059 CTCGAGCACAGGTTGAGGTT 59.966 55.000 0.00 0.00 37.76 3.50
1224 1228 0.033504 TCGAGCACAGGTTGAGGTTC 59.966 55.000 0.00 0.00 0.00 3.62
1225 1229 1.284982 CGAGCACAGGTTGAGGTTCG 61.285 60.000 0.00 0.00 0.00 3.95
1226 1230 0.249911 GAGCACAGGTTGAGGTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
1227 1231 0.249911 AGCACAGGTTGAGGTTCGTC 60.250 55.000 0.00 0.00 0.00 4.20
1228 1232 1.228657 GCACAGGTTGAGGTTCGTCC 61.229 60.000 0.00 0.00 0.00 4.79
1237 1241 3.082619 AGGTTCGTCCTCAATGGGA 57.917 52.632 0.00 0.00 44.42 4.37
1238 1242 1.358152 AGGTTCGTCCTCAATGGGAA 58.642 50.000 0.00 0.00 44.42 3.97
1239 1243 1.702957 AGGTTCGTCCTCAATGGGAAA 59.297 47.619 0.00 0.00 44.42 3.13
1240 1244 2.107552 AGGTTCGTCCTCAATGGGAAAA 59.892 45.455 0.00 0.00 44.42 2.29
1241 1245 3.089284 GGTTCGTCCTCAATGGGAAAAT 58.911 45.455 0.00 0.00 37.10 1.82
1242 1246 3.119495 GGTTCGTCCTCAATGGGAAAATG 60.119 47.826 0.00 0.00 37.10 2.32
1243 1247 2.722094 TCGTCCTCAATGGGAAAATGG 58.278 47.619 0.00 0.00 37.10 3.16
1244 1248 2.307392 TCGTCCTCAATGGGAAAATGGA 59.693 45.455 0.00 0.00 37.10 3.41
1245 1249 2.684881 CGTCCTCAATGGGAAAATGGAG 59.315 50.000 0.00 0.00 37.10 3.86
1246 1250 2.428530 GTCCTCAATGGGAAAATGGAGC 59.571 50.000 0.00 0.00 37.10 4.70
1247 1251 2.042842 TCCTCAATGGGAAAATGGAGCA 59.957 45.455 0.00 0.00 36.20 4.26
1248 1252 2.167075 CCTCAATGGGAAAATGGAGCAC 59.833 50.000 0.00 0.00 0.00 4.40
1249 1253 2.167075 CTCAATGGGAAAATGGAGCACC 59.833 50.000 0.00 0.00 0.00 5.01
1250 1254 2.181975 CAATGGGAAAATGGAGCACCT 58.818 47.619 0.71 0.00 37.04 4.00
1251 1255 3.011144 TCAATGGGAAAATGGAGCACCTA 59.989 43.478 0.71 0.00 37.04 3.08
1252 1256 3.756082 ATGGGAAAATGGAGCACCTAA 57.244 42.857 0.71 0.00 37.04 2.69
1253 1257 2.802719 TGGGAAAATGGAGCACCTAAC 58.197 47.619 0.71 0.00 37.04 2.34
1254 1258 2.109128 TGGGAAAATGGAGCACCTAACA 59.891 45.455 0.71 0.00 37.04 2.41
1255 1259 3.161866 GGGAAAATGGAGCACCTAACAA 58.838 45.455 0.71 0.00 37.04 2.83
1256 1260 3.056821 GGGAAAATGGAGCACCTAACAAC 60.057 47.826 0.71 0.00 37.04 3.32
1257 1261 3.365969 GGAAAATGGAGCACCTAACAACG 60.366 47.826 0.71 0.00 37.04 4.10
1258 1262 1.165270 AATGGAGCACCTAACAACGC 58.835 50.000 0.71 0.00 37.04 4.84
1259 1263 0.036164 ATGGAGCACCTAACAACGCA 59.964 50.000 0.71 0.00 37.04 5.24
1260 1264 0.036164 TGGAGCACCTAACAACGCAT 59.964 50.000 0.71 0.00 37.04 4.73
1261 1265 0.727398 GGAGCACCTAACAACGCATC 59.273 55.000 0.00 0.00 0.00 3.91
1262 1266 1.676014 GGAGCACCTAACAACGCATCT 60.676 52.381 0.00 0.00 0.00 2.90
1263 1267 2.076863 GAGCACCTAACAACGCATCTT 58.923 47.619 0.00 0.00 0.00 2.40
1264 1268 2.076863 AGCACCTAACAACGCATCTTC 58.923 47.619 0.00 0.00 0.00 2.87
1265 1269 1.804151 GCACCTAACAACGCATCTTCA 59.196 47.619 0.00 0.00 0.00 3.02
1266 1270 2.412847 GCACCTAACAACGCATCTTCAC 60.413 50.000 0.00 0.00 0.00 3.18
1267 1271 2.805671 CACCTAACAACGCATCTTCACA 59.194 45.455 0.00 0.00 0.00 3.58
1268 1272 3.067106 ACCTAACAACGCATCTTCACAG 58.933 45.455 0.00 0.00 0.00 3.66
1269 1273 3.244078 ACCTAACAACGCATCTTCACAGA 60.244 43.478 0.00 0.00 0.00 3.41
1270 1274 3.123621 CCTAACAACGCATCTTCACAGAC 59.876 47.826 0.00 0.00 0.00 3.51
1271 1275 1.512926 ACAACGCATCTTCACAGACC 58.487 50.000 0.00 0.00 0.00 3.85
1272 1276 1.202639 ACAACGCATCTTCACAGACCA 60.203 47.619 0.00 0.00 0.00 4.02
1273 1277 1.872952 CAACGCATCTTCACAGACCAA 59.127 47.619 0.00 0.00 0.00 3.67
1274 1278 1.800805 ACGCATCTTCACAGACCAAG 58.199 50.000 0.00 0.00 0.00 3.61
1275 1279 1.344438 ACGCATCTTCACAGACCAAGA 59.656 47.619 0.00 0.00 33.18 3.02
1276 1280 2.224281 ACGCATCTTCACAGACCAAGAA 60.224 45.455 0.00 0.00 32.40 2.52
1277 1281 2.158449 CGCATCTTCACAGACCAAGAAC 59.842 50.000 0.00 0.00 32.40 3.01
1278 1282 3.406764 GCATCTTCACAGACCAAGAACT 58.593 45.455 0.00 0.00 32.40 3.01
1279 1283 4.569943 GCATCTTCACAGACCAAGAACTA 58.430 43.478 0.00 0.00 32.40 2.24
1280 1284 4.390297 GCATCTTCACAGACCAAGAACTAC 59.610 45.833 0.00 0.00 32.40 2.73
1281 1285 4.238761 TCTTCACAGACCAAGAACTACG 57.761 45.455 0.00 0.00 0.00 3.51
1282 1286 3.887110 TCTTCACAGACCAAGAACTACGA 59.113 43.478 0.00 0.00 0.00 3.43
1283 1287 3.917329 TCACAGACCAAGAACTACGAG 57.083 47.619 0.00 0.00 0.00 4.18
1284 1288 3.483421 TCACAGACCAAGAACTACGAGA 58.517 45.455 0.00 0.00 0.00 4.04
1285 1289 4.079970 TCACAGACCAAGAACTACGAGAT 58.920 43.478 0.00 0.00 0.00 2.75
1286 1290 4.156190 TCACAGACCAAGAACTACGAGATC 59.844 45.833 0.00 0.00 0.00 2.75
1287 1291 4.079970 ACAGACCAAGAACTACGAGATCA 58.920 43.478 0.00 0.00 0.00 2.92
1288 1292 4.082679 ACAGACCAAGAACTACGAGATCAC 60.083 45.833 0.00 0.00 0.00 3.06
1289 1293 3.444388 AGACCAAGAACTACGAGATCACC 59.556 47.826 0.00 0.00 0.00 4.02
1290 1294 2.496470 ACCAAGAACTACGAGATCACCC 59.504 50.000 0.00 0.00 0.00 4.61
1291 1295 2.159085 CCAAGAACTACGAGATCACCCC 60.159 54.545 0.00 0.00 0.00 4.95
1292 1296 2.761208 CAAGAACTACGAGATCACCCCT 59.239 50.000 0.00 0.00 0.00 4.79
1293 1297 3.103080 AGAACTACGAGATCACCCCTT 57.897 47.619 0.00 0.00 0.00 3.95
1294 1298 3.442076 AGAACTACGAGATCACCCCTTT 58.558 45.455 0.00 0.00 0.00 3.11
1295 1299 3.447944 AGAACTACGAGATCACCCCTTTC 59.552 47.826 0.00 0.00 0.00 2.62
1296 1300 2.816411 ACTACGAGATCACCCCTTTCA 58.184 47.619 0.00 0.00 0.00 2.69
1297 1301 3.375699 ACTACGAGATCACCCCTTTCAT 58.624 45.455 0.00 0.00 0.00 2.57
1298 1302 3.775316 ACTACGAGATCACCCCTTTCATT 59.225 43.478 0.00 0.00 0.00 2.57
1299 1303 3.268023 ACGAGATCACCCCTTTCATTC 57.732 47.619 0.00 0.00 0.00 2.67
1300 1304 2.840651 ACGAGATCACCCCTTTCATTCT 59.159 45.455 0.00 0.00 0.00 2.40
1301 1305 3.201290 CGAGATCACCCCTTTCATTCTG 58.799 50.000 0.00 0.00 0.00 3.02
1302 1306 3.549794 GAGATCACCCCTTTCATTCTGG 58.450 50.000 0.00 0.00 0.00 3.86
1303 1307 2.243221 AGATCACCCCTTTCATTCTGGG 59.757 50.000 0.00 0.00 44.03 4.45
1308 1312 1.839424 CCCTTTCATTCTGGGGTGAC 58.161 55.000 0.00 0.00 37.37 3.67
1309 1313 1.453155 CCTTTCATTCTGGGGTGACG 58.547 55.000 0.00 0.00 0.00 4.35
1310 1314 1.453155 CTTTCATTCTGGGGTGACGG 58.547 55.000 0.00 0.00 0.00 4.79
1311 1315 1.003118 CTTTCATTCTGGGGTGACGGA 59.997 52.381 0.00 0.00 0.00 4.69
1312 1316 0.613260 TTCATTCTGGGGTGACGGAG 59.387 55.000 0.00 0.00 0.00 4.63
1313 1317 1.221840 CATTCTGGGGTGACGGAGG 59.778 63.158 0.00 0.00 0.00 4.30
1314 1318 1.995626 ATTCTGGGGTGACGGAGGG 60.996 63.158 0.00 0.00 0.00 4.30
1315 1319 2.471084 ATTCTGGGGTGACGGAGGGA 62.471 60.000 0.00 0.00 0.00 4.20
1316 1320 2.365635 CTGGGGTGACGGAGGGAT 60.366 66.667 0.00 0.00 0.00 3.85
1317 1321 2.365105 TGGGGTGACGGAGGGATC 60.365 66.667 0.00 0.00 0.00 3.36
1318 1322 3.537874 GGGGTGACGGAGGGATCG 61.538 72.222 0.00 0.00 0.00 3.69
1319 1323 2.758737 GGGTGACGGAGGGATCGT 60.759 66.667 0.00 0.00 44.03 3.73
1320 1324 1.454479 GGGTGACGGAGGGATCGTA 60.454 63.158 0.00 0.00 41.22 3.43
1321 1325 1.732308 GGTGACGGAGGGATCGTAC 59.268 63.158 0.00 0.00 41.22 3.67
1322 1326 1.732308 GTGACGGAGGGATCGTACC 59.268 63.158 0.00 0.00 41.22 3.34
1323 1327 1.033746 GTGACGGAGGGATCGTACCA 61.034 60.000 0.00 0.00 41.22 3.25
1324 1328 0.106369 TGACGGAGGGATCGTACCAT 60.106 55.000 0.00 0.00 41.22 3.55
1325 1329 1.038280 GACGGAGGGATCGTACCATT 58.962 55.000 0.00 0.00 41.22 3.16
1326 1330 1.000496 GACGGAGGGATCGTACCATTC 60.000 57.143 0.00 0.00 41.22 2.67
1327 1331 0.039437 CGGAGGGATCGTACCATTCG 60.039 60.000 2.38 2.38 36.42 3.34
1328 1332 1.325355 GGAGGGATCGTACCATTCGA 58.675 55.000 0.00 0.00 41.45 3.71
1329 1333 1.269998 GGAGGGATCGTACCATTCGAG 59.730 57.143 0.00 0.00 40.57 4.04
1330 1334 0.674534 AGGGATCGTACCATTCGAGC 59.325 55.000 0.00 0.00 41.89 5.03
1333 1337 2.510768 GATCGTACCATTCGAGCCTT 57.489 50.000 0.00 0.00 40.57 4.35
1334 1338 2.822764 GATCGTACCATTCGAGCCTTT 58.177 47.619 0.00 0.00 40.57 3.11
1335 1339 2.754946 TCGTACCATTCGAGCCTTTT 57.245 45.000 0.00 0.00 33.38 2.27
1336 1340 3.048337 TCGTACCATTCGAGCCTTTTT 57.952 42.857 0.00 0.00 33.38 1.94
1353 1357 2.162319 TTTTTCATGCTTTTCCCGGC 57.838 45.000 0.00 0.00 0.00 6.13
1354 1358 0.038709 TTTTCATGCTTTTCCCGGCG 60.039 50.000 0.00 0.00 0.00 6.46
1355 1359 1.872197 TTTCATGCTTTTCCCGGCGG 61.872 55.000 21.46 21.46 0.00 6.13
1356 1360 3.061848 CATGCTTTTCCCGGCGGT 61.062 61.111 26.32 0.00 0.00 5.68
1357 1361 2.750237 ATGCTTTTCCCGGCGGTC 60.750 61.111 26.32 6.87 0.00 4.79
1358 1362 3.268103 ATGCTTTTCCCGGCGGTCT 62.268 57.895 26.32 0.00 0.00 3.85
1359 1363 3.431725 GCTTTTCCCGGCGGTCTG 61.432 66.667 26.32 10.02 0.00 3.51
1360 1364 2.746277 CTTTTCCCGGCGGTCTGG 60.746 66.667 26.32 9.60 38.52 3.86
1361 1365 3.243053 TTTTCCCGGCGGTCTGGA 61.243 61.111 26.32 12.14 41.45 3.86
1362 1366 3.248446 TTTTCCCGGCGGTCTGGAG 62.248 63.158 26.32 8.35 41.45 3.86
1363 1367 4.689549 TTCCCGGCGGTCTGGAGA 62.690 66.667 26.32 10.91 41.45 3.71
1364 1368 4.689549 TCCCGGCGGTCTGGAGAA 62.690 66.667 26.32 0.00 41.45 2.87
1365 1369 3.702048 CCCGGCGGTCTGGAGAAA 61.702 66.667 26.32 0.00 41.45 2.52
1366 1370 2.125512 CCGGCGGTCTGGAGAAAG 60.126 66.667 19.97 0.00 41.45 2.62
1367 1371 2.815647 CGGCGGTCTGGAGAAAGC 60.816 66.667 0.00 0.00 0.00 3.51
1368 1372 2.347490 GGCGGTCTGGAGAAAGCA 59.653 61.111 6.85 0.00 32.63 3.91
1369 1373 1.743252 GGCGGTCTGGAGAAAGCAG 60.743 63.158 6.85 0.00 32.63 4.24
1370 1374 2.394563 GCGGTCTGGAGAAAGCAGC 61.395 63.158 0.00 0.00 0.00 5.25
1371 1375 1.004560 CGGTCTGGAGAAAGCAGCA 60.005 57.895 0.00 0.00 0.00 4.41
1372 1376 0.603707 CGGTCTGGAGAAAGCAGCAA 60.604 55.000 0.00 0.00 0.00 3.91
1373 1377 1.831580 GGTCTGGAGAAAGCAGCAAT 58.168 50.000 0.00 0.00 0.00 3.56
1374 1378 1.742268 GGTCTGGAGAAAGCAGCAATC 59.258 52.381 0.00 0.00 0.00 2.67
1375 1379 2.430465 GTCTGGAGAAAGCAGCAATCA 58.570 47.619 0.00 0.00 0.00 2.57
1376 1380 2.816087 GTCTGGAGAAAGCAGCAATCAA 59.184 45.455 0.00 0.00 0.00 2.57
1377 1381 3.442977 GTCTGGAGAAAGCAGCAATCAAT 59.557 43.478 0.00 0.00 0.00 2.57
1378 1382 4.637534 GTCTGGAGAAAGCAGCAATCAATA 59.362 41.667 0.00 0.00 0.00 1.90
1379 1383 4.880120 TCTGGAGAAAGCAGCAATCAATAG 59.120 41.667 0.00 0.00 0.00 1.73
1380 1384 3.949754 TGGAGAAAGCAGCAATCAATAGG 59.050 43.478 0.00 0.00 0.00 2.57
1381 1385 4.202441 GGAGAAAGCAGCAATCAATAGGA 58.798 43.478 0.00 0.00 0.00 2.94
1382 1386 4.036144 GGAGAAAGCAGCAATCAATAGGAC 59.964 45.833 0.00 0.00 0.00 3.85
1383 1387 4.853007 AGAAAGCAGCAATCAATAGGACT 58.147 39.130 0.00 0.00 0.00 3.85
1384 1388 5.259632 AGAAAGCAGCAATCAATAGGACTT 58.740 37.500 0.00 0.00 0.00 3.01
1385 1389 5.713861 AGAAAGCAGCAATCAATAGGACTTT 59.286 36.000 0.00 0.00 0.00 2.66
1386 1390 5.573337 AAGCAGCAATCAATAGGACTTTC 57.427 39.130 0.00 0.00 0.00 2.62
1387 1391 3.950395 AGCAGCAATCAATAGGACTTTCC 59.050 43.478 0.00 0.00 36.58 3.13
1400 1404 4.425180 GGACTTTCCTAATCCTCCCTTC 57.575 50.000 0.00 0.00 32.53 3.46
1401 1405 3.136809 GGACTTTCCTAATCCTCCCTTCC 59.863 52.174 0.00 0.00 32.53 3.46
1402 1406 4.041464 GACTTTCCTAATCCTCCCTTCCT 58.959 47.826 0.00 0.00 0.00 3.36
1403 1407 4.449389 ACTTTCCTAATCCTCCCTTCCTT 58.551 43.478 0.00 0.00 0.00 3.36
1404 1408 4.858519 ACTTTCCTAATCCTCCCTTCCTTT 59.141 41.667 0.00 0.00 0.00 3.11
1405 1409 5.044772 ACTTTCCTAATCCTCCCTTCCTTTC 60.045 44.000 0.00 0.00 0.00 2.62
1406 1410 4.088634 TCCTAATCCTCCCTTCCTTTCA 57.911 45.455 0.00 0.00 0.00 2.69
1407 1411 4.040755 TCCTAATCCTCCCTTCCTTTCAG 58.959 47.826 0.00 0.00 0.00 3.02
1408 1412 3.137360 CCTAATCCTCCCTTCCTTTCAGG 59.863 52.174 0.00 0.00 36.46 3.86
1409 1413 2.668850 ATCCTCCCTTCCTTTCAGGA 57.331 50.000 0.00 0.00 44.10 3.86
1419 1423 3.830744 TCCTTTCAGGAAGAACGTGAA 57.169 42.857 0.00 0.00 42.51 3.18
1794 1801 5.697633 GCATGAGGAAAATGCTTTCAAAAGA 59.302 36.000 6.67 0.00 45.62 2.52
1994 2002 8.804743 CACGAGTAAGACAACATTACGAATATT 58.195 33.333 0.00 0.00 38.02 1.28
2044 2052 3.118408 CCCATACTCAATCAAGGGTTCGA 60.118 47.826 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 7.468494 CGGTGATAAGCAAATTCATCCATTACA 60.468 37.037 0.00 0.00 0.00 2.41
317 318 4.821805 TGGAAATGGTCAAGTTCTTGAGAC 59.178 41.667 14.42 11.33 0.00 3.36
332 333 5.410355 AACCTTGATGATTGTGGAAATGG 57.590 39.130 0.00 0.00 0.00 3.16
365 366 3.118075 TGTTGTCAGGATCCTTGACACAA 60.118 43.478 30.54 23.79 41.54 3.33
382 383 6.472016 TCATCATGGTAGTATGTTGTGTTGT 58.528 36.000 0.00 0.00 32.33 3.32
425 426 6.012745 AGAGGGTGTTATCTTCTTTTGCATT 58.987 36.000 0.00 0.00 0.00 3.56
446 447 2.363683 GCCAAGGGTGAAATCTGAGAG 58.636 52.381 0.00 0.00 0.00 3.20
610 613 9.238368 CCCTAGTTGTTCCTTATGATTTTTGTA 57.762 33.333 0.00 0.00 0.00 2.41
805 809 3.843027 ACACCAACCAGATCTGAATCTCT 59.157 43.478 24.62 0.00 40.38 3.10
971 975 1.608025 GCCTTGGATGAGACAACGTGA 60.608 52.381 0.00 0.00 0.00 4.35
981 985 2.804986 TGCTAATGTGCCTTGGATGA 57.195 45.000 0.00 0.00 0.00 2.92
982 986 2.035449 CCATGCTAATGTGCCTTGGATG 59.965 50.000 0.00 0.00 37.39 3.51
983 987 2.313317 CCATGCTAATGTGCCTTGGAT 58.687 47.619 0.00 0.00 37.39 3.41
984 988 1.766494 CCATGCTAATGTGCCTTGGA 58.234 50.000 0.00 0.00 37.39 3.53
985 989 0.103572 GCCATGCTAATGTGCCTTGG 59.896 55.000 0.00 0.00 37.90 3.61
986 990 0.248743 CGCCATGCTAATGTGCCTTG 60.249 55.000 0.00 0.00 31.27 3.61
987 991 0.680921 ACGCCATGCTAATGTGCCTT 60.681 50.000 0.00 0.00 31.27 4.35
988 992 0.180171 TACGCCATGCTAATGTGCCT 59.820 50.000 0.00 0.00 31.27 4.75
989 993 0.307760 GTACGCCATGCTAATGTGCC 59.692 55.000 0.00 0.00 31.27 5.01
990 994 1.261619 GAGTACGCCATGCTAATGTGC 59.738 52.381 0.00 0.00 31.27 4.57
991 995 1.867233 GGAGTACGCCATGCTAATGTG 59.133 52.381 11.20 0.00 31.27 3.21
992 996 1.762957 AGGAGTACGCCATGCTAATGT 59.237 47.619 18.53 0.00 31.27 2.71
993 997 2.408050 GAGGAGTACGCCATGCTAATG 58.592 52.381 18.53 0.00 0.00 1.90
994 998 1.344763 GGAGGAGTACGCCATGCTAAT 59.655 52.381 18.53 0.00 39.13 1.73
995 999 0.750850 GGAGGAGTACGCCATGCTAA 59.249 55.000 18.53 0.00 39.13 3.09
996 1000 0.106167 AGGAGGAGTACGCCATGCTA 60.106 55.000 18.53 0.00 42.23 3.49
997 1001 1.381872 AGGAGGAGTACGCCATGCT 60.382 57.895 18.53 10.33 42.23 3.79
998 1002 1.227380 CAGGAGGAGTACGCCATGC 60.227 63.158 18.53 8.25 42.23 4.06
999 1003 0.537188 AACAGGAGGAGTACGCCATG 59.463 55.000 18.53 14.73 42.23 3.66
1000 1004 1.066143 CAAACAGGAGGAGTACGCCAT 60.066 52.381 18.53 2.87 42.23 4.40
1001 1005 0.320374 CAAACAGGAGGAGTACGCCA 59.680 55.000 18.53 0.00 42.23 5.69
1002 1006 0.606604 TCAAACAGGAGGAGTACGCC 59.393 55.000 7.70 7.70 39.70 5.68
1003 1007 2.450609 TTCAAACAGGAGGAGTACGC 57.549 50.000 0.00 0.00 0.00 4.42
1004 1008 3.179830 CGATTCAAACAGGAGGAGTACG 58.820 50.000 0.00 0.00 0.00 3.67
1005 1009 3.194968 TCCGATTCAAACAGGAGGAGTAC 59.805 47.826 0.00 0.00 0.00 2.73
1006 1010 3.437213 TCCGATTCAAACAGGAGGAGTA 58.563 45.455 0.00 0.00 0.00 2.59
1007 1011 2.234908 CTCCGATTCAAACAGGAGGAGT 59.765 50.000 2.61 0.00 44.78 3.85
1008 1012 2.898705 CTCCGATTCAAACAGGAGGAG 58.101 52.381 2.61 0.00 44.78 3.69
1012 1016 4.079980 TCAAACTCCGATTCAAACAGGA 57.920 40.909 0.00 0.00 0.00 3.86
1013 1017 4.829064 TTCAAACTCCGATTCAAACAGG 57.171 40.909 0.00 0.00 0.00 4.00
1014 1018 4.976116 GGTTTCAAACTCCGATTCAAACAG 59.024 41.667 0.00 0.00 0.00 3.16
1015 1019 4.399618 TGGTTTCAAACTCCGATTCAAACA 59.600 37.500 0.00 0.00 0.00 2.83
1016 1020 4.927422 TGGTTTCAAACTCCGATTCAAAC 58.073 39.130 0.00 0.00 0.00 2.93
1017 1021 5.584253 TTGGTTTCAAACTCCGATTCAAA 57.416 34.783 0.00 0.00 0.00 2.69
1018 1022 5.584253 TTTGGTTTCAAACTCCGATTCAA 57.416 34.783 0.00 0.00 37.89 2.69
1029 1033 6.015010 TGAGGAGAAGTTTGTTTGGTTTCAAA 60.015 34.615 0.00 0.00 40.23 2.69
1030 1034 5.478679 TGAGGAGAAGTTTGTTTGGTTTCAA 59.521 36.000 0.00 0.00 0.00 2.69
1031 1035 5.013547 TGAGGAGAAGTTTGTTTGGTTTCA 58.986 37.500 0.00 0.00 0.00 2.69
1032 1036 5.450550 CCTGAGGAGAAGTTTGTTTGGTTTC 60.451 44.000 0.00 0.00 0.00 2.78
1033 1037 4.402474 CCTGAGGAGAAGTTTGTTTGGTTT 59.598 41.667 0.00 0.00 0.00 3.27
1034 1038 3.954258 CCTGAGGAGAAGTTTGTTTGGTT 59.046 43.478 0.00 0.00 0.00 3.67
1035 1039 3.202151 TCCTGAGGAGAAGTTTGTTTGGT 59.798 43.478 0.00 0.00 0.00 3.67
1036 1040 3.820557 TCCTGAGGAGAAGTTTGTTTGG 58.179 45.455 0.00 0.00 0.00 3.28
1051 1055 1.274712 GCCCCATCTATCCTCCTGAG 58.725 60.000 0.00 0.00 0.00 3.35
1052 1056 0.542938 CGCCCCATCTATCCTCCTGA 60.543 60.000 0.00 0.00 0.00 3.86
1053 1057 0.542938 TCGCCCCATCTATCCTCCTG 60.543 60.000 0.00 0.00 0.00 3.86
1054 1058 0.415429 ATCGCCCCATCTATCCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
1055 1059 1.208293 GAATCGCCCCATCTATCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
1056 1060 1.902508 TGAATCGCCCCATCTATCCTC 59.097 52.381 0.00 0.00 0.00 3.71
1057 1061 1.905215 CTGAATCGCCCCATCTATCCT 59.095 52.381 0.00 0.00 0.00 3.24
1058 1062 1.065854 CCTGAATCGCCCCATCTATCC 60.066 57.143 0.00 0.00 0.00 2.59
1059 1063 1.625818 ACCTGAATCGCCCCATCTATC 59.374 52.381 0.00 0.00 0.00 2.08
1060 1064 1.349026 CACCTGAATCGCCCCATCTAT 59.651 52.381 0.00 0.00 0.00 1.98
1061 1065 0.758734 CACCTGAATCGCCCCATCTA 59.241 55.000 0.00 0.00 0.00 1.98
1062 1066 0.982852 TCACCTGAATCGCCCCATCT 60.983 55.000 0.00 0.00 0.00 2.90
1063 1067 0.533755 CTCACCTGAATCGCCCCATC 60.534 60.000 0.00 0.00 0.00 3.51
1064 1068 0.982852 TCTCACCTGAATCGCCCCAT 60.983 55.000 0.00 0.00 0.00 4.00
1065 1069 0.982852 ATCTCACCTGAATCGCCCCA 60.983 55.000 0.00 0.00 0.00 4.96
1066 1070 0.250081 GATCTCACCTGAATCGCCCC 60.250 60.000 0.00 0.00 0.00 5.80
1067 1071 0.250081 GGATCTCACCTGAATCGCCC 60.250 60.000 0.00 0.00 0.00 6.13
1068 1072 0.250081 GGGATCTCACCTGAATCGCC 60.250 60.000 0.00 0.00 0.00 5.54
1069 1073 0.465705 TGGGATCTCACCTGAATCGC 59.534 55.000 0.00 0.00 0.00 4.58
1070 1074 2.103771 ACATGGGATCTCACCTGAATCG 59.896 50.000 0.00 0.00 0.00 3.34
1071 1075 3.853355 ACATGGGATCTCACCTGAATC 57.147 47.619 0.00 0.00 0.00 2.52
1072 1076 4.560739 TCTACATGGGATCTCACCTGAAT 58.439 43.478 0.00 0.00 0.00 2.57
1073 1077 3.994317 TCTACATGGGATCTCACCTGAA 58.006 45.455 0.00 0.00 0.00 3.02
1074 1078 3.688049 TCTACATGGGATCTCACCTGA 57.312 47.619 0.00 0.00 0.00 3.86
1075 1079 4.158786 AGATCTACATGGGATCTCACCTG 58.841 47.826 20.51 0.00 44.33 4.00
1076 1080 4.484026 AGATCTACATGGGATCTCACCT 57.516 45.455 20.51 5.99 44.33 4.00
1077 1081 5.777732 AGTTAGATCTACATGGGATCTCACC 59.222 44.000 25.98 18.14 44.33 4.02
1078 1082 6.909550 AGTTAGATCTACATGGGATCTCAC 57.090 41.667 25.98 24.46 44.33 3.51
1079 1083 7.786943 AGAAAGTTAGATCTACATGGGATCTCA 59.213 37.037 25.98 17.80 44.33 3.27
1080 1084 8.189119 AGAAAGTTAGATCTACATGGGATCTC 57.811 38.462 25.98 17.44 44.33 2.75
1084 1088 9.434275 TGAATAGAAAGTTAGATCTACATGGGA 57.566 33.333 0.67 0.00 31.35 4.37
1085 1089 9.482627 GTGAATAGAAAGTTAGATCTACATGGG 57.517 37.037 0.67 0.00 31.35 4.00
1089 1093 9.175312 ACGAGTGAATAGAAAGTTAGATCTACA 57.825 33.333 0.67 0.00 31.35 2.74
1090 1094 9.440784 CACGAGTGAATAGAAAGTTAGATCTAC 57.559 37.037 0.67 0.00 31.35 2.59
1091 1095 8.622157 CCACGAGTGAATAGAAAGTTAGATCTA 58.378 37.037 4.59 0.00 33.00 1.98
1092 1096 7.416890 CCCACGAGTGAATAGAAAGTTAGATCT 60.417 40.741 4.59 0.00 0.00 2.75
1093 1097 6.697892 CCCACGAGTGAATAGAAAGTTAGATC 59.302 42.308 4.59 0.00 0.00 2.75
1094 1098 6.380274 TCCCACGAGTGAATAGAAAGTTAGAT 59.620 38.462 4.59 0.00 0.00 1.98
1095 1099 5.713389 TCCCACGAGTGAATAGAAAGTTAGA 59.287 40.000 4.59 0.00 0.00 2.10
1096 1100 5.962433 TCCCACGAGTGAATAGAAAGTTAG 58.038 41.667 4.59 0.00 0.00 2.34
1097 1101 5.988310 TCCCACGAGTGAATAGAAAGTTA 57.012 39.130 4.59 0.00 0.00 2.24
1098 1102 4.884668 TCCCACGAGTGAATAGAAAGTT 57.115 40.909 4.59 0.00 0.00 2.66
1099 1103 4.141914 GGATCCCACGAGTGAATAGAAAGT 60.142 45.833 0.00 0.00 0.00 2.66
1100 1104 4.372656 GGATCCCACGAGTGAATAGAAAG 58.627 47.826 0.00 0.00 0.00 2.62
1101 1105 3.181479 CGGATCCCACGAGTGAATAGAAA 60.181 47.826 6.06 0.00 0.00 2.52
1102 1106 2.361119 CGGATCCCACGAGTGAATAGAA 59.639 50.000 6.06 0.00 0.00 2.10
1103 1107 1.954382 CGGATCCCACGAGTGAATAGA 59.046 52.381 6.06 0.00 0.00 1.98
1104 1108 1.000163 CCGGATCCCACGAGTGAATAG 60.000 57.143 6.06 0.00 0.00 1.73
1105 1109 1.037493 CCGGATCCCACGAGTGAATA 58.963 55.000 6.06 0.00 0.00 1.75
1106 1110 1.686325 CCCGGATCCCACGAGTGAAT 61.686 60.000 0.73 0.00 0.00 2.57
1107 1111 2.355986 CCCGGATCCCACGAGTGAA 61.356 63.158 0.73 0.00 0.00 3.18
1108 1112 2.758327 CCCGGATCCCACGAGTGA 60.758 66.667 0.73 0.00 0.00 3.41
1109 1113 4.530857 GCCCGGATCCCACGAGTG 62.531 72.222 0.73 0.00 0.00 3.51
1141 1145 2.232298 GAAGAGAGGAGCCGTGGTGG 62.232 65.000 0.00 0.00 42.50 4.61
1142 1146 1.216710 GAAGAGAGGAGCCGTGGTG 59.783 63.158 0.00 0.00 0.00 4.17
1143 1147 0.968393 GAGAAGAGAGGAGCCGTGGT 60.968 60.000 0.00 0.00 0.00 4.16
1144 1148 1.813192 GAGAAGAGAGGAGCCGTGG 59.187 63.158 0.00 0.00 0.00 4.94
1145 1149 1.027255 TCGAGAAGAGAGGAGCCGTG 61.027 60.000 0.00 0.00 0.00 4.94
1146 1150 1.300305 TCGAGAAGAGAGGAGCCGT 59.700 57.895 0.00 0.00 0.00 5.68
1147 1151 4.227197 TCGAGAAGAGAGGAGCCG 57.773 61.111 0.00 0.00 0.00 5.52
1156 1160 4.524714 GGGATGTATGGATTCTCGAGAAGA 59.475 45.833 29.89 17.93 37.48 2.87
1157 1161 4.526262 AGGGATGTATGGATTCTCGAGAAG 59.474 45.833 29.89 0.00 37.48 2.85
1158 1162 4.483950 AGGGATGTATGGATTCTCGAGAA 58.516 43.478 28.85 28.85 38.56 2.87
1159 1163 4.119556 AGGGATGTATGGATTCTCGAGA 57.880 45.455 12.08 12.08 0.00 4.04
1160 1164 4.881019 AAGGGATGTATGGATTCTCGAG 57.119 45.455 5.93 5.93 0.00 4.04
1161 1165 6.016555 TGATAAGGGATGTATGGATTCTCGA 58.983 40.000 0.00 0.00 0.00 4.04
1162 1166 6.071108 ACTGATAAGGGATGTATGGATTCTCG 60.071 42.308 0.00 0.00 0.00 4.04
1163 1167 7.102346 CACTGATAAGGGATGTATGGATTCTC 58.898 42.308 0.00 0.00 0.00 2.87
1164 1168 6.560304 ACACTGATAAGGGATGTATGGATTCT 59.440 38.462 0.00 0.00 0.00 2.40
1165 1169 6.773638 ACACTGATAAGGGATGTATGGATTC 58.226 40.000 0.00 0.00 0.00 2.52
1166 1170 6.770286 ACACTGATAAGGGATGTATGGATT 57.230 37.500 0.00 0.00 0.00 3.01
1167 1171 7.855375 CATACACTGATAAGGGATGTATGGAT 58.145 38.462 12.69 0.00 44.77 3.41
1168 1172 7.244886 CATACACTGATAAGGGATGTATGGA 57.755 40.000 12.69 0.00 44.77 3.41
1170 1174 7.179160 TCTCCATACACTGATAAGGGATGTATG 59.821 40.741 13.31 13.31 46.62 2.39
1171 1175 7.248976 TCTCCATACACTGATAAGGGATGTAT 58.751 38.462 0.00 0.00 37.02 2.29
1172 1176 6.620429 TCTCCATACACTGATAAGGGATGTA 58.380 40.000 0.00 0.00 0.00 2.29
1173 1177 5.467738 TCTCCATACACTGATAAGGGATGT 58.532 41.667 0.00 0.00 0.00 3.06
1174 1178 5.568423 GCTCTCCATACACTGATAAGGGATG 60.568 48.000 0.00 0.00 0.00 3.51
1175 1179 4.530161 GCTCTCCATACACTGATAAGGGAT 59.470 45.833 0.00 0.00 0.00 3.85
1176 1180 3.898123 GCTCTCCATACACTGATAAGGGA 59.102 47.826 0.00 0.00 0.00 4.20
1177 1181 3.900601 AGCTCTCCATACACTGATAAGGG 59.099 47.826 0.00 0.00 0.00 3.95
1178 1182 6.663093 AGATAGCTCTCCATACACTGATAAGG 59.337 42.308 0.00 0.00 0.00 2.69
1179 1183 7.701539 AGATAGCTCTCCATACACTGATAAG 57.298 40.000 0.00 0.00 0.00 1.73
1180 1184 7.695480 GAGATAGCTCTCCATACACTGATAA 57.305 40.000 0.00 0.00 41.86 1.75
1195 1199 1.266718 CCTGTGCTCGAGAGATAGCTC 59.733 57.143 18.75 0.00 40.84 4.09
1196 1200 1.317613 CCTGTGCTCGAGAGATAGCT 58.682 55.000 18.75 0.00 40.84 3.32
1197 1201 1.028905 ACCTGTGCTCGAGAGATAGC 58.971 55.000 18.75 0.00 40.84 2.97
1198 1202 2.685388 TCAACCTGTGCTCGAGAGATAG 59.315 50.000 18.75 9.02 40.84 2.08
1199 1203 2.685388 CTCAACCTGTGCTCGAGAGATA 59.315 50.000 18.75 0.00 40.84 1.98
1200 1204 1.476085 CTCAACCTGTGCTCGAGAGAT 59.524 52.381 18.75 0.00 40.84 2.75
1201 1205 0.884514 CTCAACCTGTGCTCGAGAGA 59.115 55.000 18.75 0.00 39.12 3.10
1202 1206 0.108898 CCTCAACCTGTGCTCGAGAG 60.109 60.000 18.75 4.43 0.00 3.20
1203 1207 0.827925 ACCTCAACCTGTGCTCGAGA 60.828 55.000 18.75 0.00 0.00 4.04
1204 1208 0.034059 AACCTCAACCTGTGCTCGAG 59.966 55.000 8.45 8.45 0.00 4.04
1205 1209 0.033504 GAACCTCAACCTGTGCTCGA 59.966 55.000 0.00 0.00 0.00 4.04
1206 1210 1.284982 CGAACCTCAACCTGTGCTCG 61.285 60.000 0.00 0.00 0.00 5.03
1207 1211 0.249911 ACGAACCTCAACCTGTGCTC 60.250 55.000 0.00 0.00 0.00 4.26
1208 1212 0.249911 GACGAACCTCAACCTGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
1209 1213 1.228657 GGACGAACCTCAACCTGTGC 61.229 60.000 0.00 0.00 35.41 4.57
1210 1214 2.914379 GGACGAACCTCAACCTGTG 58.086 57.895 0.00 0.00 35.41 3.66
1220 1224 2.194201 TTTCCCATTGAGGACGAACC 57.806 50.000 0.00 0.00 41.22 3.62
1221 1225 3.119495 CCATTTTCCCATTGAGGACGAAC 60.119 47.826 0.00 0.00 41.22 3.95
1222 1226 3.088532 CCATTTTCCCATTGAGGACGAA 58.911 45.455 0.00 0.00 41.22 3.85
1223 1227 2.307392 TCCATTTTCCCATTGAGGACGA 59.693 45.455 0.00 0.00 41.22 4.20
1224 1228 2.684881 CTCCATTTTCCCATTGAGGACG 59.315 50.000 0.00 0.00 41.22 4.79
1225 1229 2.428530 GCTCCATTTTCCCATTGAGGAC 59.571 50.000 0.00 0.00 41.22 3.85
1226 1230 2.042842 TGCTCCATTTTCCCATTGAGGA 59.957 45.455 0.00 0.00 41.22 3.71
1227 1231 2.167075 GTGCTCCATTTTCCCATTGAGG 59.833 50.000 0.00 0.00 37.03 3.86
1228 1232 2.167075 GGTGCTCCATTTTCCCATTGAG 59.833 50.000 0.00 0.00 0.00 3.02
1229 1233 2.178580 GGTGCTCCATTTTCCCATTGA 58.821 47.619 0.00 0.00 0.00 2.57
1230 1234 2.181975 AGGTGCTCCATTTTCCCATTG 58.818 47.619 7.70 0.00 35.89 2.82
1231 1235 2.629017 AGGTGCTCCATTTTCCCATT 57.371 45.000 7.70 0.00 35.89 3.16
1232 1236 3.245586 TGTTAGGTGCTCCATTTTCCCAT 60.246 43.478 7.70 0.00 35.89 4.00
1233 1237 2.109128 TGTTAGGTGCTCCATTTTCCCA 59.891 45.455 7.70 0.00 35.89 4.37
1234 1238 2.802719 TGTTAGGTGCTCCATTTTCCC 58.197 47.619 7.70 0.00 35.89 3.97
1235 1239 3.365969 CGTTGTTAGGTGCTCCATTTTCC 60.366 47.826 7.70 0.00 35.89 3.13
1236 1240 3.821841 CGTTGTTAGGTGCTCCATTTTC 58.178 45.455 7.70 0.00 35.89 2.29
1237 1241 2.030274 GCGTTGTTAGGTGCTCCATTTT 60.030 45.455 7.70 0.00 35.89 1.82
1238 1242 1.539827 GCGTTGTTAGGTGCTCCATTT 59.460 47.619 7.70 0.00 35.89 2.32
1239 1243 1.165270 GCGTTGTTAGGTGCTCCATT 58.835 50.000 7.70 0.00 35.89 3.16
1240 1244 0.036164 TGCGTTGTTAGGTGCTCCAT 59.964 50.000 7.70 0.00 35.89 3.41
1241 1245 0.036164 ATGCGTTGTTAGGTGCTCCA 59.964 50.000 7.70 0.00 35.89 3.86
1242 1246 0.727398 GATGCGTTGTTAGGTGCTCC 59.273 55.000 0.00 0.00 0.00 4.70
1243 1247 1.726853 AGATGCGTTGTTAGGTGCTC 58.273 50.000 0.00 0.00 0.00 4.26
1244 1248 2.076863 GAAGATGCGTTGTTAGGTGCT 58.923 47.619 0.00 0.00 0.00 4.40
1245 1249 1.804151 TGAAGATGCGTTGTTAGGTGC 59.196 47.619 0.00 0.00 0.00 5.01
1246 1250 2.805671 TGTGAAGATGCGTTGTTAGGTG 59.194 45.455 0.00 0.00 0.00 4.00
1247 1251 3.067106 CTGTGAAGATGCGTTGTTAGGT 58.933 45.455 0.00 0.00 0.00 3.08
1248 1252 3.123621 GTCTGTGAAGATGCGTTGTTAGG 59.876 47.826 0.00 0.00 0.00 2.69
1249 1253 3.123621 GGTCTGTGAAGATGCGTTGTTAG 59.876 47.826 0.00 0.00 0.00 2.34
1250 1254 3.064207 GGTCTGTGAAGATGCGTTGTTA 58.936 45.455 0.00 0.00 0.00 2.41
1251 1255 1.873591 GGTCTGTGAAGATGCGTTGTT 59.126 47.619 0.00 0.00 0.00 2.83
1252 1256 1.202639 TGGTCTGTGAAGATGCGTTGT 60.203 47.619 0.00 0.00 0.00 3.32
1253 1257 1.511850 TGGTCTGTGAAGATGCGTTG 58.488 50.000 0.00 0.00 0.00 4.10
1254 1258 2.146342 CTTGGTCTGTGAAGATGCGTT 58.854 47.619 0.00 0.00 0.00 4.84
1255 1259 1.344438 TCTTGGTCTGTGAAGATGCGT 59.656 47.619 0.00 0.00 0.00 5.24
1256 1260 2.084610 TCTTGGTCTGTGAAGATGCG 57.915 50.000 0.00 0.00 0.00 4.73
1257 1261 3.406764 AGTTCTTGGTCTGTGAAGATGC 58.593 45.455 0.00 0.00 0.00 3.91
1258 1262 4.623167 CGTAGTTCTTGGTCTGTGAAGATG 59.377 45.833 0.00 0.00 0.00 2.90
1259 1263 4.523173 TCGTAGTTCTTGGTCTGTGAAGAT 59.477 41.667 0.00 0.00 0.00 2.40
1260 1264 3.887110 TCGTAGTTCTTGGTCTGTGAAGA 59.113 43.478 0.00 0.00 0.00 2.87
1261 1265 4.023107 TCTCGTAGTTCTTGGTCTGTGAAG 60.023 45.833 0.00 0.00 0.00 3.02
1262 1266 3.887110 TCTCGTAGTTCTTGGTCTGTGAA 59.113 43.478 0.00 0.00 0.00 3.18
1263 1267 3.483421 TCTCGTAGTTCTTGGTCTGTGA 58.517 45.455 0.00 0.00 0.00 3.58
1264 1268 3.917329 TCTCGTAGTTCTTGGTCTGTG 57.083 47.619 0.00 0.00 0.00 3.66
1265 1269 4.079970 TGATCTCGTAGTTCTTGGTCTGT 58.920 43.478 0.00 0.00 0.00 3.41
1266 1270 4.416620 GTGATCTCGTAGTTCTTGGTCTG 58.583 47.826 0.00 0.00 0.00 3.51
1267 1271 3.444388 GGTGATCTCGTAGTTCTTGGTCT 59.556 47.826 0.00 0.00 0.00 3.85
1268 1272 3.429135 GGGTGATCTCGTAGTTCTTGGTC 60.429 52.174 0.00 0.00 0.00 4.02
1269 1273 2.496470 GGGTGATCTCGTAGTTCTTGGT 59.504 50.000 0.00 0.00 0.00 3.67
1270 1274 2.159085 GGGGTGATCTCGTAGTTCTTGG 60.159 54.545 0.00 0.00 0.00 3.61
1271 1275 2.761208 AGGGGTGATCTCGTAGTTCTTG 59.239 50.000 0.00 0.00 0.00 3.02
1272 1276 3.103080 AGGGGTGATCTCGTAGTTCTT 57.897 47.619 0.00 0.00 0.00 2.52
1273 1277 2.830651 AGGGGTGATCTCGTAGTTCT 57.169 50.000 0.00 0.00 0.00 3.01
1274 1278 3.194968 TGAAAGGGGTGATCTCGTAGTTC 59.805 47.826 0.00 0.00 0.00 3.01
1275 1279 3.170717 TGAAAGGGGTGATCTCGTAGTT 58.829 45.455 0.00 0.00 0.00 2.24
1276 1280 2.816411 TGAAAGGGGTGATCTCGTAGT 58.184 47.619 0.00 0.00 0.00 2.73
1277 1281 4.100189 AGAATGAAAGGGGTGATCTCGTAG 59.900 45.833 0.00 0.00 0.00 3.51
1278 1282 4.030913 AGAATGAAAGGGGTGATCTCGTA 58.969 43.478 0.00 0.00 0.00 3.43
1279 1283 2.840651 AGAATGAAAGGGGTGATCTCGT 59.159 45.455 0.00 0.00 0.00 4.18
1280 1284 3.201290 CAGAATGAAAGGGGTGATCTCG 58.799 50.000 0.00 0.00 39.69 4.04
1281 1285 3.549794 CCAGAATGAAAGGGGTGATCTC 58.450 50.000 0.00 0.00 39.69 2.75
1282 1286 2.243221 CCCAGAATGAAAGGGGTGATCT 59.757 50.000 0.00 0.00 39.69 2.75
1283 1287 2.659428 CCCAGAATGAAAGGGGTGATC 58.341 52.381 0.00 0.00 39.69 2.92
1284 1288 2.834638 CCCAGAATGAAAGGGGTGAT 57.165 50.000 0.00 0.00 39.69 3.06
1289 1293 1.839424 GTCACCCCAGAATGAAAGGG 58.161 55.000 0.00 0.00 40.50 3.95
1290 1294 1.453155 CGTCACCCCAGAATGAAAGG 58.547 55.000 0.00 0.00 39.69 3.11
1291 1295 1.003118 TCCGTCACCCCAGAATGAAAG 59.997 52.381 0.00 0.00 39.69 2.62
1292 1296 1.003118 CTCCGTCACCCCAGAATGAAA 59.997 52.381 0.00 0.00 39.69 2.69
1293 1297 0.613260 CTCCGTCACCCCAGAATGAA 59.387 55.000 0.00 0.00 39.69 2.57
1294 1298 1.264749 CCTCCGTCACCCCAGAATGA 61.265 60.000 0.00 0.00 39.69 2.57
1295 1299 1.221840 CCTCCGTCACCCCAGAATG 59.778 63.158 0.00 0.00 0.00 2.67
1296 1300 1.995626 CCCTCCGTCACCCCAGAAT 60.996 63.158 0.00 0.00 0.00 2.40
1297 1301 2.471084 ATCCCTCCGTCACCCCAGAA 62.471 60.000 0.00 0.00 0.00 3.02
1298 1302 2.873557 GATCCCTCCGTCACCCCAGA 62.874 65.000 0.00 0.00 0.00 3.86
1299 1303 2.365635 ATCCCTCCGTCACCCCAG 60.366 66.667 0.00 0.00 0.00 4.45
1300 1304 2.365105 GATCCCTCCGTCACCCCA 60.365 66.667 0.00 0.00 0.00 4.96
1301 1305 2.916527 TACGATCCCTCCGTCACCCC 62.917 65.000 0.00 0.00 40.95 4.95
1302 1306 1.454479 TACGATCCCTCCGTCACCC 60.454 63.158 0.00 0.00 40.95 4.61
1303 1307 1.732308 GTACGATCCCTCCGTCACC 59.268 63.158 0.00 0.00 40.95 4.02
1304 1308 1.033746 TGGTACGATCCCTCCGTCAC 61.034 60.000 0.00 0.00 40.95 3.67
1305 1309 0.106369 ATGGTACGATCCCTCCGTCA 60.106 55.000 0.00 0.00 40.95 4.35
1306 1310 1.000496 GAATGGTACGATCCCTCCGTC 60.000 57.143 0.00 0.00 40.95 4.79
1307 1311 1.038280 GAATGGTACGATCCCTCCGT 58.962 55.000 0.00 0.00 43.26 4.69
1308 1312 0.039437 CGAATGGTACGATCCCTCCG 60.039 60.000 0.00 0.00 0.00 4.63
1309 1313 1.269998 CTCGAATGGTACGATCCCTCC 59.730 57.143 0.00 0.00 39.02 4.30
1310 1314 1.336056 GCTCGAATGGTACGATCCCTC 60.336 57.143 0.00 0.00 39.02 4.30
1311 1315 0.674534 GCTCGAATGGTACGATCCCT 59.325 55.000 0.00 0.00 39.02 4.20
1312 1316 0.319641 GGCTCGAATGGTACGATCCC 60.320 60.000 0.00 0.00 39.24 3.85
1313 1317 0.674534 AGGCTCGAATGGTACGATCC 59.325 55.000 0.00 0.00 43.43 3.36
1314 1318 2.510768 AAGGCTCGAATGGTACGATC 57.489 50.000 0.00 0.00 39.02 3.69
1315 1319 2.981859 AAAGGCTCGAATGGTACGAT 57.018 45.000 0.00 0.00 39.02 3.73
1316 1320 2.754946 AAAAGGCTCGAATGGTACGA 57.245 45.000 0.00 0.00 38.11 3.43
1334 1338 1.604185 CGCCGGGAAAAGCATGAAAAA 60.604 47.619 2.18 0.00 0.00 1.94
1335 1339 0.038709 CGCCGGGAAAAGCATGAAAA 60.039 50.000 2.18 0.00 0.00 2.29
1336 1340 1.583986 CGCCGGGAAAAGCATGAAA 59.416 52.632 2.18 0.00 0.00 2.69
1337 1341 2.339556 CCGCCGGGAAAAGCATGAA 61.340 57.895 2.18 0.00 34.06 2.57
1338 1342 2.749839 CCGCCGGGAAAAGCATGA 60.750 61.111 2.18 0.00 34.06 3.07
1339 1343 3.051392 GACCGCCGGGAAAAGCATG 62.051 63.158 8.57 0.00 36.97 4.06
1340 1344 2.750237 GACCGCCGGGAAAAGCAT 60.750 61.111 8.57 0.00 36.97 3.79
1341 1345 3.948719 AGACCGCCGGGAAAAGCA 61.949 61.111 8.57 0.00 36.97 3.91
1342 1346 3.431725 CAGACCGCCGGGAAAAGC 61.432 66.667 8.57 0.00 36.97 3.51
1343 1347 2.746277 CCAGACCGCCGGGAAAAG 60.746 66.667 8.57 0.00 36.97 2.27
1344 1348 3.243053 TCCAGACCGCCGGGAAAA 61.243 61.111 8.57 0.00 36.17 2.29
1345 1349 3.702048 CTCCAGACCGCCGGGAAA 61.702 66.667 8.57 0.00 38.67 3.13
1346 1350 4.689549 TCTCCAGACCGCCGGGAA 62.690 66.667 8.57 0.00 38.67 3.97
1347 1351 4.689549 TTCTCCAGACCGCCGGGA 62.690 66.667 8.57 0.00 36.77 5.14
1348 1352 3.665675 CTTTCTCCAGACCGCCGGG 62.666 68.421 8.57 0.00 40.11 5.73
1349 1353 2.125512 CTTTCTCCAGACCGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
1350 1354 2.815647 GCTTTCTCCAGACCGCCG 60.816 66.667 0.00 0.00 0.00 6.46
1351 1355 1.743252 CTGCTTTCTCCAGACCGCC 60.743 63.158 0.00 0.00 32.03 6.13
1352 1356 2.394563 GCTGCTTTCTCCAGACCGC 61.395 63.158 0.00 0.00 32.03 5.68
1353 1357 0.603707 TTGCTGCTTTCTCCAGACCG 60.604 55.000 0.00 0.00 32.03 4.79
1354 1358 1.742268 GATTGCTGCTTTCTCCAGACC 59.258 52.381 0.00 0.00 32.03 3.85
1355 1359 2.430465 TGATTGCTGCTTTCTCCAGAC 58.570 47.619 0.00 0.00 32.03 3.51
1356 1360 2.865119 TGATTGCTGCTTTCTCCAGA 57.135 45.000 0.00 0.00 32.03 3.86
1357 1361 4.036498 CCTATTGATTGCTGCTTTCTCCAG 59.964 45.833 0.00 0.00 0.00 3.86
1358 1362 3.949754 CCTATTGATTGCTGCTTTCTCCA 59.050 43.478 0.00 0.00 0.00 3.86
1359 1363 4.036144 GTCCTATTGATTGCTGCTTTCTCC 59.964 45.833 0.00 0.00 0.00 3.71
1360 1364 4.880696 AGTCCTATTGATTGCTGCTTTCTC 59.119 41.667 0.00 0.00 0.00 2.87
1361 1365 4.853007 AGTCCTATTGATTGCTGCTTTCT 58.147 39.130 0.00 0.00 0.00 2.52
1362 1366 5.573337 AAGTCCTATTGATTGCTGCTTTC 57.427 39.130 0.00 0.00 0.00 2.62
1363 1367 5.105595 GGAAAGTCCTATTGATTGCTGCTTT 60.106 40.000 0.00 0.00 32.53 3.51
1364 1368 4.400567 GGAAAGTCCTATTGATTGCTGCTT 59.599 41.667 0.00 0.00 32.53 3.91
1365 1369 3.950395 GGAAAGTCCTATTGATTGCTGCT 59.050 43.478 0.00 0.00 32.53 4.24
1366 1370 4.298744 GGAAAGTCCTATTGATTGCTGC 57.701 45.455 0.00 0.00 32.53 5.25
1379 1383 3.136809 GGAAGGGAGGATTAGGAAAGTCC 59.863 52.174 0.00 0.00 36.58 3.85
1380 1384 4.041464 AGGAAGGGAGGATTAGGAAAGTC 58.959 47.826 0.00 0.00 0.00 3.01
1381 1385 4.095616 AGGAAGGGAGGATTAGGAAAGT 57.904 45.455 0.00 0.00 0.00 2.66
1382 1386 5.044846 TGAAAGGAAGGGAGGATTAGGAAAG 60.045 44.000 0.00 0.00 0.00 2.62
1383 1387 4.855599 TGAAAGGAAGGGAGGATTAGGAAA 59.144 41.667 0.00 0.00 0.00 3.13
1384 1388 4.444611 TGAAAGGAAGGGAGGATTAGGAA 58.555 43.478 0.00 0.00 0.00 3.36
1385 1389 4.040755 CTGAAAGGAAGGGAGGATTAGGA 58.959 47.826 0.00 0.00 0.00 2.94
1386 1390 4.429854 CTGAAAGGAAGGGAGGATTAGG 57.570 50.000 0.00 0.00 0.00 2.69
1401 1405 7.042051 TGTCTTATTTCACGTTCTTCCTGAAAG 60.042 37.037 0.00 0.00 37.34 2.62
1402 1406 6.764085 TGTCTTATTTCACGTTCTTCCTGAAA 59.236 34.615 0.00 0.00 38.07 2.69
1403 1407 6.285224 TGTCTTATTTCACGTTCTTCCTGAA 58.715 36.000 0.00 0.00 0.00 3.02
1404 1408 5.849510 TGTCTTATTTCACGTTCTTCCTGA 58.150 37.500 0.00 0.00 0.00 3.86
1405 1409 6.539649 TTGTCTTATTTCACGTTCTTCCTG 57.460 37.500 0.00 0.00 0.00 3.86
1406 1410 5.179555 GCTTGTCTTATTTCACGTTCTTCCT 59.820 40.000 0.00 0.00 0.00 3.36
1407 1411 5.049680 TGCTTGTCTTATTTCACGTTCTTCC 60.050 40.000 0.00 0.00 0.00 3.46
1408 1412 5.985781 TGCTTGTCTTATTTCACGTTCTTC 58.014 37.500 0.00 0.00 0.00 2.87
1409 1413 6.204688 TCATGCTTGTCTTATTTCACGTTCTT 59.795 34.615 0.00 0.00 0.00 2.52
1410 1414 5.700832 TCATGCTTGTCTTATTTCACGTTCT 59.299 36.000 0.00 0.00 0.00 3.01
1411 1415 5.790495 GTCATGCTTGTCTTATTTCACGTTC 59.210 40.000 0.00 0.00 0.00 3.95
1412 1416 5.334879 GGTCATGCTTGTCTTATTTCACGTT 60.335 40.000 0.00 0.00 0.00 3.99
1413 1417 4.154195 GGTCATGCTTGTCTTATTTCACGT 59.846 41.667 0.00 0.00 0.00 4.49
1414 1418 4.154015 TGGTCATGCTTGTCTTATTTCACG 59.846 41.667 0.00 0.00 0.00 4.35
1415 1419 5.048782 TGTGGTCATGCTTGTCTTATTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
1416 1420 5.069318 TGTGGTCATGCTTGTCTTATTTCA 58.931 37.500 0.00 0.00 0.00 2.69
1417 1421 5.627499 TGTGGTCATGCTTGTCTTATTTC 57.373 39.130 0.00 0.00 0.00 2.17
1418 1422 6.040842 ACTTTGTGGTCATGCTTGTCTTATTT 59.959 34.615 0.00 0.00 0.00 1.40
1419 1423 5.536161 ACTTTGTGGTCATGCTTGTCTTATT 59.464 36.000 0.00 0.00 0.00 1.40
1420 1424 5.072741 ACTTTGTGGTCATGCTTGTCTTAT 58.927 37.500 0.00 0.00 0.00 1.73
1421 1425 4.460263 ACTTTGTGGTCATGCTTGTCTTA 58.540 39.130 0.00 0.00 0.00 2.10
1493 1497 6.264970 GGACTTATGTAAGGACTTCGATACCT 59.735 42.308 4.92 0.00 37.62 3.08
1994 2002 5.298026 TCGTCAAATCAAATCAGAACCAACA 59.702 36.000 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.