Multiple sequence alignment - TraesCS5A01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G445400 chr5A 100.000 2350 0 0 1966 4315 624966473 624964124 0.000000e+00 4340
1 TraesCS5A01G445400 chr5A 100.000 1367 0 0 1 1367 624968438 624967072 0.000000e+00 2525
2 TraesCS5A01G445400 chr5A 97.601 667 6 8 3658 4315 627025589 627026254 0.000000e+00 1134
3 TraesCS5A01G445400 chr5A 83.049 1115 147 25 1980 3066 627015529 627016629 0.000000e+00 974
4 TraesCS5A01G445400 chr5A 74.119 1078 201 43 2245 3303 680742491 680743509 1.470000e-99 374
5 TraesCS5A01G445400 chr5A 79.093 507 65 25 804 1274 627014753 627015254 1.170000e-80 311
6 TraesCS5A01G445400 chr5A 72.846 917 189 35 1993 2896 680532532 680531663 4.280000e-65 259
7 TraesCS5A01G445400 chr5A 81.498 227 40 2 3091 3315 627024651 627024877 7.370000e-43 185
8 TraesCS5A01G445400 chr5A 77.947 263 50 7 1012 1268 680764299 680764039 1.610000e-34 158
9 TraesCS5A01G445400 chr5D 91.951 1553 89 17 1966 3495 500681704 500683243 0.000000e+00 2143
10 TraesCS5A01G445400 chr5D 92.970 697 32 8 3629 4315 500683440 500684129 0.000000e+00 1000
11 TraesCS5A01G445400 chr5D 89.835 787 41 14 509 1267 500680564 500681339 0.000000e+00 974
12 TraesCS5A01G445400 chr5D 90.667 450 38 3 67 515 113088030 113088476 2.870000e-166 595
13 TraesCS5A01G445400 chr5D 81.959 582 76 19 1973 2547 500647146 500647705 2.350000e-127 466
14 TraesCS5A01G445400 chr5D 86.186 333 39 2 2608 2933 500647711 500648043 1.910000e-93 353
15 TraesCS5A01G445400 chr5D 82.181 376 54 8 2947 3317 500648144 500648511 1.170000e-80 311
16 TraesCS5A01G445400 chr5D 91.026 78 5 1 1265 1342 500681538 500681613 2.120000e-18 104
17 TraesCS5A01G445400 chr5B 91.173 1518 89 17 1973 3469 622074138 622075631 0.000000e+00 2019
18 TraesCS5A01G445400 chr5B 91.827 624 44 4 3687 4310 622323982 622324598 0.000000e+00 863
19 TraesCS5A01G445400 chr5B 92.955 582 29 6 695 1267 622073125 622073703 0.000000e+00 837
20 TraesCS5A01G445400 chr5B 83.364 547 70 15 1973 2508 622061562 622062098 1.800000e-133 486
21 TraesCS5A01G445400 chr5B 86.557 424 54 2 2504 2927 622063294 622063714 8.450000e-127 464
22 TraesCS5A01G445400 chr5B 81.915 376 54 11 2947 3316 622063823 622064190 5.420000e-79 305
23 TraesCS5A01G445400 chr5B 90.741 162 13 1 509 670 622072820 622072979 9.400000e-52 215
24 TraesCS5A01G445400 chr5B 80.711 197 10 2 3527 3711 622075762 622075942 1.260000e-25 128
25 TraesCS5A01G445400 chr5B 97.222 72 1 1 1 71 537815771 537815842 2.110000e-23 121
26 TraesCS5A01G445400 chr4D 90.423 449 38 4 67 515 112916649 112917092 1.730000e-163 586
27 TraesCS5A01G445400 chr4D 76.281 1269 204 64 1986 3227 499546865 499545667 1.730000e-163 586
28 TraesCS5A01G445400 chr4D 88.717 452 40 7 67 515 13411424 13410981 3.800000e-150 542
29 TraesCS5A01G445400 chr4D 85.837 233 28 4 1012 1240 499504564 499504333 4.310000e-60 243
30 TraesCS5A01G445400 chr6B 89.823 452 39 5 67 515 332896310 332895863 1.350000e-159 573
31 TraesCS5A01G445400 chr6B 85.350 471 47 7 67 515 580131356 580131826 6.530000e-128 468
32 TraesCS5A01G445400 chr6B 91.667 84 5 2 1 83 34695134 34695052 9.810000e-22 115
33 TraesCS5A01G445400 chr4B 75.368 1360 218 68 1986 3317 642462701 642461431 8.160000e-152 547
34 TraesCS5A01G445400 chr4B 84.188 234 30 4 1012 1240 642458710 642458479 2.020000e-53 220
35 TraesCS5A01G445400 chr4B 78.277 267 50 8 1009 1268 642746626 642746891 9.600000e-37 165
36 TraesCS5A01G445400 chr1B 88.132 455 48 6 67 515 328592962 328592508 1.770000e-148 536
37 TraesCS5A01G445400 chr6D 91.885 382 30 1 135 515 262862375 262861994 2.280000e-147 532
38 TraesCS5A01G445400 chr6D 98.529 68 1 0 1 68 199509988 199509921 2.110000e-23 121
39 TraesCS5A01G445400 chr3D 88.383 439 44 3 67 505 255898074 255898505 4.940000e-144 521
40 TraesCS5A01G445400 chr3D 86.652 457 51 8 67 515 170400634 170401088 8.330000e-137 497
41 TraesCS5A01G445400 chr3D 94.667 75 3 1 1 74 96751236 96751310 9.810000e-22 115
42 TraesCS5A01G445400 chr2A 86.593 455 52 8 67 515 455195188 455195639 1.080000e-135 494
43 TraesCS5A01G445400 chr6A 100.000 67 0 0 2 68 484122964 484123030 1.630000e-24 124
44 TraesCS5A01G445400 chr7B 97.222 72 1 1 1 71 434651388 434651317 2.110000e-23 121
45 TraesCS5A01G445400 chr1D 98.529 68 1 0 1 68 133983768 133983701 2.110000e-23 121
46 TraesCS5A01G445400 chr1A 97.222 72 1 1 2 72 11431801 11431872 2.110000e-23 121
47 TraesCS5A01G445400 chr7D 93.671 79 4 1 1 79 229298028 229297951 2.730000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G445400 chr5A 624964124 624968438 4314 True 3432.500000 4340 100.000000 1 4315 2 chr5A.!!$R3 4314
1 TraesCS5A01G445400 chr5A 627024651 627026254 1603 False 659.500000 1134 89.549500 3091 4315 2 chr5A.!!$F3 1224
2 TraesCS5A01G445400 chr5A 627014753 627016629 1876 False 642.500000 974 81.071000 804 3066 2 chr5A.!!$F2 2262
3 TraesCS5A01G445400 chr5A 680742491 680743509 1018 False 374.000000 374 74.119000 2245 3303 1 chr5A.!!$F1 1058
4 TraesCS5A01G445400 chr5A 680531663 680532532 869 True 259.000000 259 72.846000 1993 2896 1 chr5A.!!$R1 903
5 TraesCS5A01G445400 chr5D 500680564 500684129 3565 False 1055.250000 2143 91.445500 509 4315 4 chr5D.!!$F3 3806
6 TraesCS5A01G445400 chr5D 500647146 500648511 1365 False 376.666667 466 83.442000 1973 3317 3 chr5D.!!$F2 1344
7 TraesCS5A01G445400 chr5B 622323982 622324598 616 False 863.000000 863 91.827000 3687 4310 1 chr5B.!!$F2 623
8 TraesCS5A01G445400 chr5B 622072820 622075942 3122 False 799.750000 2019 88.895000 509 3711 4 chr5B.!!$F4 3202
9 TraesCS5A01G445400 chr5B 622061562 622064190 2628 False 418.333333 486 83.945333 1973 3316 3 chr5B.!!$F3 1343
10 TraesCS5A01G445400 chr4D 499545667 499546865 1198 True 586.000000 586 76.281000 1986 3227 1 chr4D.!!$R3 1241
11 TraesCS5A01G445400 chr4B 642458479 642462701 4222 True 383.500000 547 79.778000 1012 3317 2 chr4B.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.034337 ACCGCCGTGCTCTAAAAAGA 59.966 50.000 0.00 0.0 0.00 2.52 F
377 378 0.740149 CTCAAAAGGTGTGTGCAGCA 59.260 50.000 0.00 0.0 44.89 4.41 F
384 385 0.953727 GGTGTGTGCAGCAAAGATGA 59.046 50.000 0.00 0.0 42.26 2.92 F
842 980 1.201647 TCGGATTCCACGACAACTCTC 59.798 52.381 3.09 0.0 35.12 3.20 F
843 981 1.736032 CGGATTCCACGACAACTCTCC 60.736 57.143 3.09 0.0 0.00 3.71 F
2204 2721 2.111384 ACTATTGCCATCGGACTGAGT 58.889 47.619 0.00 0.0 0.00 3.41 F
2631 4439 0.468029 CTGGGTGCTTCAAAGGTGGT 60.468 55.000 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 1358 1.534235 AGACCGCTGTTCCTGAGGT 60.534 57.895 0.00 0.00 38.06 3.85 R
2356 2908 2.697654 ACTTTCTGACTGATGCTCTGC 58.302 47.619 0.00 0.00 0.00 4.26 R
2382 2934 1.660167 CTGCAGAATCTTGATCGGCA 58.340 50.000 8.42 1.73 43.93 5.69 R
2550 4303 0.107654 ACCTGCGAAGATGGTAAGGC 60.108 55.000 0.00 0.00 33.33 4.35 R
2551 4304 1.656652 CACCTGCGAAGATGGTAAGG 58.343 55.000 0.00 0.00 33.72 2.69 R
3113 5035 0.322098 CACGGTTATGGTCTTGCCCA 60.322 55.000 0.00 0.00 39.27 5.36 R
3571 7535 2.192664 TGTATGCTTTTGCCCTTCGA 57.807 45.000 0.00 0.00 46.87 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.981806 TGTGGACAAGACAAAAAGAAGG 57.018 40.909 0.00 0.00 0.00 3.46
24 25 4.594970 TGTGGACAAGACAAAAAGAAGGA 58.405 39.130 0.00 0.00 0.00 3.36
25 26 4.640201 TGTGGACAAGACAAAAAGAAGGAG 59.360 41.667 0.00 0.00 0.00 3.69
26 27 4.881850 GTGGACAAGACAAAAAGAAGGAGA 59.118 41.667 0.00 0.00 0.00 3.71
27 28 5.532779 GTGGACAAGACAAAAAGAAGGAGAT 59.467 40.000 0.00 0.00 0.00 2.75
28 29 6.710744 GTGGACAAGACAAAAAGAAGGAGATA 59.289 38.462 0.00 0.00 0.00 1.98
29 30 6.936900 TGGACAAGACAAAAAGAAGGAGATAG 59.063 38.462 0.00 0.00 0.00 2.08
30 31 6.937465 GGACAAGACAAAAAGAAGGAGATAGT 59.063 38.462 0.00 0.00 0.00 2.12
31 32 7.118535 GGACAAGACAAAAAGAAGGAGATAGTC 59.881 40.741 0.00 0.00 0.00 2.59
32 33 7.740805 ACAAGACAAAAAGAAGGAGATAGTCT 58.259 34.615 0.00 0.00 35.53 3.24
33 34 7.875554 ACAAGACAAAAAGAAGGAGATAGTCTC 59.124 37.037 0.00 0.00 42.66 3.36
34 35 7.546250 AGACAAAAAGAAGGAGATAGTCTCA 57.454 36.000 9.01 0.00 45.12 3.27
35 36 7.382898 AGACAAAAAGAAGGAGATAGTCTCAC 58.617 38.462 9.01 0.00 45.12 3.51
36 37 7.015682 AGACAAAAAGAAGGAGATAGTCTCACA 59.984 37.037 9.01 0.00 45.12 3.58
37 38 7.684529 ACAAAAAGAAGGAGATAGTCTCACAT 58.315 34.615 9.01 0.00 45.12 3.21
38 39 7.821846 ACAAAAAGAAGGAGATAGTCTCACATC 59.178 37.037 9.01 4.21 45.12 3.06
39 40 7.487822 AAAAGAAGGAGATAGTCTCACATCA 57.512 36.000 9.01 0.00 45.12 3.07
40 41 7.487822 AAAGAAGGAGATAGTCTCACATCAA 57.512 36.000 9.01 0.00 45.12 2.57
41 42 6.463995 AGAAGGAGATAGTCTCACATCAAC 57.536 41.667 9.01 0.00 45.12 3.18
42 43 6.194235 AGAAGGAGATAGTCTCACATCAACT 58.806 40.000 9.01 0.00 45.12 3.16
43 44 7.350382 AGAAGGAGATAGTCTCACATCAACTA 58.650 38.462 9.01 0.00 45.12 2.24
44 45 7.502226 AGAAGGAGATAGTCTCACATCAACTAG 59.498 40.741 9.01 0.00 45.12 2.57
45 46 6.068010 AGGAGATAGTCTCACATCAACTAGG 58.932 44.000 9.01 0.00 45.12 3.02
46 47 5.278758 GGAGATAGTCTCACATCAACTAGGC 60.279 48.000 9.01 0.00 45.12 3.93
47 48 2.949451 AGTCTCACATCAACTAGGCG 57.051 50.000 0.00 0.00 0.00 5.52
48 49 2.171840 AGTCTCACATCAACTAGGCGT 58.828 47.619 0.00 0.00 0.00 5.68
49 50 3.353557 AGTCTCACATCAACTAGGCGTA 58.646 45.455 0.00 0.00 0.00 4.42
50 51 3.954904 AGTCTCACATCAACTAGGCGTAT 59.045 43.478 0.00 0.00 0.00 3.06
51 52 4.036971 AGTCTCACATCAACTAGGCGTATC 59.963 45.833 0.00 0.00 0.00 2.24
52 53 3.951680 TCTCACATCAACTAGGCGTATCA 59.048 43.478 0.00 0.00 0.00 2.15
53 54 4.401202 TCTCACATCAACTAGGCGTATCAA 59.599 41.667 0.00 0.00 0.00 2.57
54 55 4.430007 TCACATCAACTAGGCGTATCAAC 58.570 43.478 0.00 0.00 0.00 3.18
55 56 4.081917 TCACATCAACTAGGCGTATCAACA 60.082 41.667 0.00 0.00 0.00 3.33
56 57 4.268644 CACATCAACTAGGCGTATCAACAG 59.731 45.833 0.00 0.00 0.00 3.16
57 58 3.520290 TCAACTAGGCGTATCAACAGG 57.480 47.619 0.00 0.00 0.00 4.00
58 59 1.933853 CAACTAGGCGTATCAACAGGC 59.066 52.381 0.00 0.00 0.00 4.85
59 60 1.486211 ACTAGGCGTATCAACAGGCT 58.514 50.000 0.00 0.00 43.35 4.58
60 61 2.662866 ACTAGGCGTATCAACAGGCTA 58.337 47.619 0.00 0.00 41.18 3.93
61 62 3.231818 ACTAGGCGTATCAACAGGCTAT 58.768 45.455 0.00 0.00 41.20 2.97
62 63 2.533266 AGGCGTATCAACAGGCTATG 57.467 50.000 0.00 0.00 39.06 2.23
63 64 1.070758 AGGCGTATCAACAGGCTATGG 59.929 52.381 0.00 0.00 39.06 2.74
64 65 1.070134 GGCGTATCAACAGGCTATGGA 59.930 52.381 0.00 0.00 0.00 3.41
65 66 2.408050 GCGTATCAACAGGCTATGGAG 58.592 52.381 0.00 0.00 0.00 3.86
66 67 2.035961 GCGTATCAACAGGCTATGGAGA 59.964 50.000 0.00 0.00 0.00 3.71
67 68 3.306364 GCGTATCAACAGGCTATGGAGAT 60.306 47.826 0.00 0.00 33.04 2.75
68 69 4.489810 CGTATCAACAGGCTATGGAGATC 58.510 47.826 0.00 0.00 31.49 2.75
69 70 4.219507 CGTATCAACAGGCTATGGAGATCT 59.780 45.833 0.00 0.00 31.49 2.75
70 71 4.888326 ATCAACAGGCTATGGAGATCTC 57.112 45.455 14.75 14.75 0.00 2.75
71 72 3.646534 TCAACAGGCTATGGAGATCTCA 58.353 45.455 23.85 10.74 0.00 3.27
72 73 4.033009 TCAACAGGCTATGGAGATCTCAA 58.967 43.478 23.85 14.13 0.00 3.02
73 74 4.471025 TCAACAGGCTATGGAGATCTCAAA 59.529 41.667 23.85 12.04 0.00 2.69
74 75 5.045651 TCAACAGGCTATGGAGATCTCAAAA 60.046 40.000 23.85 9.52 0.00 2.44
75 76 4.775236 ACAGGCTATGGAGATCTCAAAAC 58.225 43.478 23.85 7.37 0.00 2.43
76 77 4.225942 ACAGGCTATGGAGATCTCAAAACA 59.774 41.667 23.85 12.82 0.00 2.83
77 78 5.188434 CAGGCTATGGAGATCTCAAAACAA 58.812 41.667 23.85 2.89 0.00 2.83
78 79 5.826737 CAGGCTATGGAGATCTCAAAACAAT 59.173 40.000 23.85 9.54 0.00 2.71
79 80 6.017275 CAGGCTATGGAGATCTCAAAACAATC 60.017 42.308 23.85 4.85 0.00 2.67
80 81 5.824624 GGCTATGGAGATCTCAAAACAATCA 59.175 40.000 23.85 10.36 0.00 2.57
81 82 6.489361 GGCTATGGAGATCTCAAAACAATCAT 59.511 38.462 23.85 16.15 0.00 2.45
82 83 7.663081 GGCTATGGAGATCTCAAAACAATCATA 59.337 37.037 23.85 16.37 0.00 2.15
83 84 9.060347 GCTATGGAGATCTCAAAACAATCATAA 57.940 33.333 23.85 4.85 0.00 1.90
85 86 7.870509 TGGAGATCTCAAAACAATCATAAGG 57.129 36.000 23.85 0.00 0.00 2.69
86 87 7.632861 TGGAGATCTCAAAACAATCATAAGGA 58.367 34.615 23.85 0.00 0.00 3.36
87 88 8.108999 TGGAGATCTCAAAACAATCATAAGGAA 58.891 33.333 23.85 0.00 0.00 3.36
88 89 9.129532 GGAGATCTCAAAACAATCATAAGGAAT 57.870 33.333 23.85 0.00 0.00 3.01
90 91 9.690913 AGATCTCAAAACAATCATAAGGAATCA 57.309 29.630 0.00 0.00 0.00 2.57
93 94 9.912634 TCTCAAAACAATCATAAGGAATCAAAC 57.087 29.630 0.00 0.00 0.00 2.93
94 95 9.918630 CTCAAAACAATCATAAGGAATCAAACT 57.081 29.630 0.00 0.00 0.00 2.66
99 100 8.868522 ACAATCATAAGGAATCAAACTTCTCA 57.131 30.769 0.00 0.00 0.00 3.27
100 101 9.471702 ACAATCATAAGGAATCAAACTTCTCAT 57.528 29.630 0.00 0.00 0.00 2.90
113 114 8.791327 TCAAACTTCTCATAGTATTCAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
114 115 8.668353 TCAAACTTCTCATAGTATTCAATGCAC 58.332 33.333 0.00 0.00 0.00 4.57
115 116 8.671921 CAAACTTCTCATAGTATTCAATGCACT 58.328 33.333 0.00 0.00 0.00 4.40
116 117 8.798859 AACTTCTCATAGTATTCAATGCACTT 57.201 30.769 0.00 0.00 0.00 3.16
117 118 8.798859 ACTTCTCATAGTATTCAATGCACTTT 57.201 30.769 0.00 0.00 0.00 2.66
118 119 9.890629 ACTTCTCATAGTATTCAATGCACTTTA 57.109 29.630 0.00 0.00 0.00 1.85
131 132 9.624697 TTCAATGCACTTTATATGAAAGTTGTC 57.375 29.630 5.15 0.77 38.32 3.18
132 133 8.791675 TCAATGCACTTTATATGAAAGTTGTCA 58.208 29.630 5.15 5.07 38.32 3.58
133 134 9.577110 CAATGCACTTTATATGAAAGTTGTCAT 57.423 29.630 5.15 6.62 38.32 3.06
226 227 7.934855 AAGTGAAGCATAAGAGTTCATCAAT 57.065 32.000 0.00 0.00 32.98 2.57
227 228 7.934855 AGTGAAGCATAAGAGTTCATCAATT 57.065 32.000 0.00 0.00 32.98 2.32
228 229 8.345724 AGTGAAGCATAAGAGTTCATCAATTT 57.654 30.769 0.00 0.00 32.98 1.82
229 230 8.457261 AGTGAAGCATAAGAGTTCATCAATTTC 58.543 33.333 0.00 0.00 32.98 2.17
230 231 8.457261 GTGAAGCATAAGAGTTCATCAATTTCT 58.543 33.333 0.00 0.00 32.98 2.52
231 232 9.671279 TGAAGCATAAGAGTTCATCAATTTCTA 57.329 29.630 0.00 0.00 0.00 2.10
249 250 9.620660 CAATTTCTATATAATAAAACCACCGCC 57.379 33.333 0.00 0.00 0.00 6.13
250 251 7.424227 TTTCTATATAATAAAACCACCGCCG 57.576 36.000 0.00 0.00 0.00 6.46
251 252 6.100404 TCTATATAATAAAACCACCGCCGT 57.900 37.500 0.00 0.00 0.00 5.68
252 253 5.927689 TCTATATAATAAAACCACCGCCGTG 59.072 40.000 0.00 0.00 39.91 4.94
253 254 0.803740 TAATAAAACCACCGCCGTGC 59.196 50.000 0.00 0.00 38.79 5.34
254 255 0.891904 AATAAAACCACCGCCGTGCT 60.892 50.000 0.00 0.00 38.79 4.40
255 256 1.303091 ATAAAACCACCGCCGTGCTC 61.303 55.000 0.00 0.00 38.79 4.26
256 257 2.386064 TAAAACCACCGCCGTGCTCT 62.386 55.000 0.00 0.00 38.79 4.09
257 258 2.386064 AAAACCACCGCCGTGCTCTA 62.386 55.000 0.00 0.00 38.79 2.43
258 259 2.386064 AAACCACCGCCGTGCTCTAA 62.386 55.000 0.00 0.00 38.79 2.10
259 260 2.047655 CCACCGCCGTGCTCTAAA 60.048 61.111 0.00 0.00 38.79 1.85
260 261 1.669760 CCACCGCCGTGCTCTAAAA 60.670 57.895 0.00 0.00 38.79 1.52
261 262 1.231958 CCACCGCCGTGCTCTAAAAA 61.232 55.000 0.00 0.00 38.79 1.94
262 263 0.165944 CACCGCCGTGCTCTAAAAAG 59.834 55.000 0.00 0.00 32.04 2.27
263 264 0.034337 ACCGCCGTGCTCTAAAAAGA 59.966 50.000 0.00 0.00 0.00 2.52
264 265 1.338769 ACCGCCGTGCTCTAAAAAGAT 60.339 47.619 0.00 0.00 0.00 2.40
265 266 2.093869 ACCGCCGTGCTCTAAAAAGATA 60.094 45.455 0.00 0.00 0.00 1.98
266 267 3.131396 CCGCCGTGCTCTAAAAAGATAT 58.869 45.455 0.00 0.00 0.00 1.63
267 268 4.202182 ACCGCCGTGCTCTAAAAAGATATA 60.202 41.667 0.00 0.00 0.00 0.86
268 269 4.748102 CCGCCGTGCTCTAAAAAGATATAA 59.252 41.667 0.00 0.00 0.00 0.98
269 270 5.107453 CCGCCGTGCTCTAAAAAGATATAAG 60.107 44.000 0.00 0.00 0.00 1.73
270 271 5.462398 CGCCGTGCTCTAAAAAGATATAAGT 59.538 40.000 0.00 0.00 0.00 2.24
271 272 6.562270 CGCCGTGCTCTAAAAAGATATAAGTG 60.562 42.308 0.00 0.00 0.00 3.16
272 273 6.479001 GCCGTGCTCTAAAAAGATATAAGTGA 59.521 38.462 0.00 0.00 0.00 3.41
273 274 7.011109 GCCGTGCTCTAAAAAGATATAAGTGAA 59.989 37.037 0.00 0.00 0.00 3.18
274 275 8.543774 CCGTGCTCTAAAAAGATATAAGTGAAG 58.456 37.037 0.00 0.00 0.00 3.02
275 276 8.058915 CGTGCTCTAAAAAGATATAAGTGAAGC 58.941 37.037 0.00 0.00 0.00 3.86
276 277 8.883731 GTGCTCTAAAAAGATATAAGTGAAGCA 58.116 33.333 0.00 0.00 0.00 3.91
277 278 8.883731 TGCTCTAAAAAGATATAAGTGAAGCAC 58.116 33.333 0.00 0.00 34.10 4.40
283 284 8.655651 AAAAGATATAAGTGAAGCACTAGAGC 57.344 34.615 3.68 3.68 44.62 4.09
284 285 6.968263 AGATATAAGTGAAGCACTAGAGCA 57.032 37.500 14.80 0.00 44.62 4.26
285 286 7.353414 AGATATAAGTGAAGCACTAGAGCAA 57.647 36.000 14.80 0.00 44.62 3.91
286 287 7.786030 AGATATAAGTGAAGCACTAGAGCAAA 58.214 34.615 14.80 0.00 44.62 3.68
287 288 8.260818 AGATATAAGTGAAGCACTAGAGCAAAA 58.739 33.333 14.80 0.00 44.62 2.44
288 289 8.970859 ATATAAGTGAAGCACTAGAGCAAAAT 57.029 30.769 14.80 0.00 44.62 1.82
289 290 7.693969 ATAAGTGAAGCACTAGAGCAAAATT 57.306 32.000 14.80 7.18 44.62 1.82
290 291 5.368256 AGTGAAGCACTAGAGCAAAATTG 57.632 39.130 14.80 0.00 43.46 2.32
313 314 9.618890 ATTGCTTAGCTCAAAAGATATAAGTGA 57.381 29.630 5.60 0.00 0.00 3.41
314 315 9.448438 TTGCTTAGCTCAAAAGATATAAGTGAA 57.552 29.630 5.60 0.00 0.00 3.18
315 316 9.102757 TGCTTAGCTCAAAAGATATAAGTGAAG 57.897 33.333 5.60 0.00 0.00 3.02
316 317 8.067189 GCTTAGCTCAAAAGATATAAGTGAAGC 58.933 37.037 0.00 0.00 0.00 3.86
317 318 9.102757 CTTAGCTCAAAAGATATAAGTGAAGCA 57.897 33.333 0.00 0.00 0.00 3.91
318 319 7.313951 AGCTCAAAAGATATAAGTGAAGCAC 57.686 36.000 0.00 0.00 34.10 4.40
319 320 6.881065 AGCTCAAAAGATATAAGTGAAGCACA 59.119 34.615 0.00 0.00 36.74 4.57
320 321 7.555554 AGCTCAAAAGATATAAGTGAAGCACAT 59.444 33.333 0.00 0.00 36.74 3.21
321 322 8.830580 GCTCAAAAGATATAAGTGAAGCACATA 58.169 33.333 0.00 0.00 36.74 2.29
326 327 8.737168 AAGATATAAGTGAAGCACATAAAGCA 57.263 30.769 0.00 0.00 36.74 3.91
327 328 8.915057 AGATATAAGTGAAGCACATAAAGCAT 57.085 30.769 0.00 0.00 36.74 3.79
328 329 9.347240 AGATATAAGTGAAGCACATAAAGCATT 57.653 29.630 0.00 0.00 36.74 3.56
329 330 9.604626 GATATAAGTGAAGCACATAAAGCATTC 57.395 33.333 0.00 0.00 36.74 2.67
330 331 5.972107 AAGTGAAGCACATAAAGCATTCT 57.028 34.783 0.00 0.00 36.74 2.40
331 332 8.737168 ATAAGTGAAGCACATAAAGCATTCTA 57.263 30.769 0.00 0.00 36.74 2.10
332 333 7.452880 AAGTGAAGCACATAAAGCATTCTAA 57.547 32.000 0.00 0.00 36.74 2.10
333 334 7.636150 AGTGAAGCACATAAAGCATTCTAAT 57.364 32.000 0.00 0.00 36.74 1.73
334 335 8.737168 AGTGAAGCACATAAAGCATTCTAATA 57.263 30.769 0.00 0.00 36.74 0.98
335 336 9.177608 AGTGAAGCACATAAAGCATTCTAATAA 57.822 29.630 0.00 0.00 36.74 1.40
336 337 9.787532 GTGAAGCACATAAAGCATTCTAATAAA 57.212 29.630 0.00 0.00 34.08 1.40
340 341 9.956720 AGCACATAAAGCATTCTAATAAATCAC 57.043 29.630 0.00 0.00 0.00 3.06
341 342 8.895845 GCACATAAAGCATTCTAATAAATCACG 58.104 33.333 0.00 0.00 0.00 4.35
356 357 5.560966 AAATCACGATTTATGTGTGTCCC 57.439 39.130 3.18 0.00 39.08 4.46
357 358 3.973206 TCACGATTTATGTGTGTCCCT 57.027 42.857 0.00 0.00 38.48 4.20
358 359 3.857052 TCACGATTTATGTGTGTCCCTC 58.143 45.455 0.00 0.00 38.48 4.30
359 360 3.513912 TCACGATTTATGTGTGTCCCTCT 59.486 43.478 0.00 0.00 38.48 3.69
360 361 3.865745 CACGATTTATGTGTGTCCCTCTC 59.134 47.826 0.00 0.00 32.68 3.20
361 362 3.513912 ACGATTTATGTGTGTCCCTCTCA 59.486 43.478 0.00 0.00 0.00 3.27
362 363 4.020573 ACGATTTATGTGTGTCCCTCTCAA 60.021 41.667 0.00 0.00 0.00 3.02
363 364 4.935205 CGATTTATGTGTGTCCCTCTCAAA 59.065 41.667 0.00 0.00 0.00 2.69
364 365 5.411361 CGATTTATGTGTGTCCCTCTCAAAA 59.589 40.000 0.00 0.00 0.00 2.44
365 366 6.402550 CGATTTATGTGTGTCCCTCTCAAAAG 60.403 42.308 0.00 0.00 0.00 2.27
366 367 2.638480 TGTGTGTCCCTCTCAAAAGG 57.362 50.000 0.00 0.00 36.08 3.11
367 368 1.843851 TGTGTGTCCCTCTCAAAAGGT 59.156 47.619 0.00 0.00 34.34 3.50
368 369 2.222027 GTGTGTCCCTCTCAAAAGGTG 58.778 52.381 0.00 0.00 34.34 4.00
369 370 1.843851 TGTGTCCCTCTCAAAAGGTGT 59.156 47.619 0.00 0.00 34.34 4.16
370 371 2.222027 GTGTCCCTCTCAAAAGGTGTG 58.778 52.381 0.00 0.00 34.34 3.82
371 372 1.843851 TGTCCCTCTCAAAAGGTGTGT 59.156 47.619 0.00 0.00 34.34 3.72
372 373 2.222027 GTCCCTCTCAAAAGGTGTGTG 58.778 52.381 0.00 0.00 34.34 3.82
373 374 0.954452 CCCTCTCAAAAGGTGTGTGC 59.046 55.000 0.00 0.00 34.34 4.57
374 375 1.679139 CCTCTCAAAAGGTGTGTGCA 58.321 50.000 0.00 0.00 0.00 4.57
375 376 1.605710 CCTCTCAAAAGGTGTGTGCAG 59.394 52.381 0.00 0.00 0.00 4.41
376 377 1.002033 CTCTCAAAAGGTGTGTGCAGC 60.002 52.381 0.00 0.00 42.96 5.25
377 378 0.740149 CTCAAAAGGTGTGTGCAGCA 59.260 50.000 0.00 0.00 44.89 4.41
378 379 1.134753 CTCAAAAGGTGTGTGCAGCAA 59.865 47.619 0.00 0.00 44.89 3.91
379 380 1.547820 TCAAAAGGTGTGTGCAGCAAA 59.452 42.857 0.00 0.00 44.89 3.68
380 381 1.928503 CAAAAGGTGTGTGCAGCAAAG 59.071 47.619 0.00 0.00 44.89 2.77
381 382 1.473258 AAAGGTGTGTGCAGCAAAGA 58.527 45.000 0.00 0.00 44.89 2.52
382 383 1.696063 AAGGTGTGTGCAGCAAAGAT 58.304 45.000 0.00 0.00 44.89 2.40
383 384 0.956633 AGGTGTGTGCAGCAAAGATG 59.043 50.000 0.00 0.00 44.89 2.90
384 385 0.953727 GGTGTGTGCAGCAAAGATGA 59.046 50.000 0.00 0.00 42.26 2.92
385 386 1.542915 GGTGTGTGCAGCAAAGATGAT 59.457 47.619 0.00 0.00 42.26 2.45
386 387 2.029649 GGTGTGTGCAGCAAAGATGATT 60.030 45.455 0.00 0.00 42.26 2.57
387 388 2.984471 GTGTGTGCAGCAAAGATGATTG 59.016 45.455 0.00 0.00 0.00 2.67
388 389 2.624364 TGTGTGCAGCAAAGATGATTGT 59.376 40.909 0.00 0.00 32.80 2.71
389 390 2.984471 GTGTGCAGCAAAGATGATTGTG 59.016 45.455 0.00 0.00 32.80 3.33
390 391 2.885894 TGTGCAGCAAAGATGATTGTGA 59.114 40.909 0.00 0.00 32.80 3.58
391 392 3.240069 GTGCAGCAAAGATGATTGTGAC 58.760 45.455 0.00 0.00 32.80 3.67
392 393 2.885894 TGCAGCAAAGATGATTGTGACA 59.114 40.909 0.00 0.00 32.80 3.58
393 394 3.318557 TGCAGCAAAGATGATTGTGACAA 59.681 39.130 0.00 0.00 32.80 3.18
394 395 4.021807 TGCAGCAAAGATGATTGTGACAAT 60.022 37.500 11.10 11.10 32.80 2.71
395 396 4.927425 GCAGCAAAGATGATTGTGACAATT 59.073 37.500 12.62 0.00 32.80 2.32
396 397 5.407387 GCAGCAAAGATGATTGTGACAATTT 59.593 36.000 12.62 3.42 32.80 1.82
397 398 6.587226 GCAGCAAAGATGATTGTGACAATTTA 59.413 34.615 12.62 5.54 32.80 1.40
398 399 7.116662 GCAGCAAAGATGATTGTGACAATTTAA 59.883 33.333 12.62 2.25 32.80 1.52
399 400 8.980610 CAGCAAAGATGATTGTGACAATTTAAA 58.019 29.630 12.62 0.00 32.80 1.52
400 401 9.545105 AGCAAAGATGATTGTGACAATTTAAAA 57.455 25.926 12.62 0.00 32.80 1.52
426 427 9.878599 AAACAAAGACTTAAATCATACAAGACG 57.121 29.630 0.00 0.00 0.00 4.18
427 428 7.519002 ACAAAGACTTAAATCATACAAGACGC 58.481 34.615 0.00 0.00 0.00 5.19
428 429 7.387948 ACAAAGACTTAAATCATACAAGACGCT 59.612 33.333 0.00 0.00 0.00 5.07
429 430 7.527084 AAGACTTAAATCATACAAGACGCTC 57.473 36.000 0.00 0.00 0.00 5.03
430 431 6.043411 AGACTTAAATCATACAAGACGCTCC 58.957 40.000 0.00 0.00 0.00 4.70
431 432 5.730550 ACTTAAATCATACAAGACGCTCCA 58.269 37.500 0.00 0.00 0.00 3.86
432 433 6.170506 ACTTAAATCATACAAGACGCTCCAA 58.829 36.000 0.00 0.00 0.00 3.53
433 434 6.653320 ACTTAAATCATACAAGACGCTCCAAA 59.347 34.615 0.00 0.00 0.00 3.28
434 435 4.946784 AATCATACAAGACGCTCCAAAC 57.053 40.909 0.00 0.00 0.00 2.93
435 436 3.394674 TCATACAAGACGCTCCAAACA 57.605 42.857 0.00 0.00 0.00 2.83
436 437 3.734463 TCATACAAGACGCTCCAAACAA 58.266 40.909 0.00 0.00 0.00 2.83
437 438 4.130857 TCATACAAGACGCTCCAAACAAA 58.869 39.130 0.00 0.00 0.00 2.83
438 439 4.576873 TCATACAAGACGCTCCAAACAAAA 59.423 37.500 0.00 0.00 0.00 2.44
439 440 3.145212 ACAAGACGCTCCAAACAAAAC 57.855 42.857 0.00 0.00 0.00 2.43
440 441 2.490115 ACAAGACGCTCCAAACAAAACA 59.510 40.909 0.00 0.00 0.00 2.83
441 442 2.844122 AGACGCTCCAAACAAAACAC 57.156 45.000 0.00 0.00 0.00 3.32
442 443 2.088423 AGACGCTCCAAACAAAACACA 58.912 42.857 0.00 0.00 0.00 3.72
443 444 2.687935 AGACGCTCCAAACAAAACACAT 59.312 40.909 0.00 0.00 0.00 3.21
444 445 3.880490 AGACGCTCCAAACAAAACACATA 59.120 39.130 0.00 0.00 0.00 2.29
445 446 4.518970 AGACGCTCCAAACAAAACACATAT 59.481 37.500 0.00 0.00 0.00 1.78
446 447 4.794169 ACGCTCCAAACAAAACACATATC 58.206 39.130 0.00 0.00 0.00 1.63
447 448 4.277174 ACGCTCCAAACAAAACACATATCA 59.723 37.500 0.00 0.00 0.00 2.15
448 449 5.048083 ACGCTCCAAACAAAACACATATCAT 60.048 36.000 0.00 0.00 0.00 2.45
449 450 6.150307 ACGCTCCAAACAAAACACATATCATA 59.850 34.615 0.00 0.00 0.00 2.15
450 451 6.468956 CGCTCCAAACAAAACACATATCATAC 59.531 38.462 0.00 0.00 0.00 2.39
451 452 6.468956 GCTCCAAACAAAACACATATCATACG 59.531 38.462 0.00 0.00 0.00 3.06
452 453 7.625395 GCTCCAAACAAAACACATATCATACGA 60.625 37.037 0.00 0.00 0.00 3.43
453 454 8.275015 TCCAAACAAAACACATATCATACGAT 57.725 30.769 0.00 0.00 35.50 3.73
454 455 8.180920 TCCAAACAAAACACATATCATACGATG 58.819 33.333 0.00 0.00 32.73 3.84
455 456 8.180920 CCAAACAAAACACATATCATACGATGA 58.819 33.333 0.00 0.00 44.55 2.92
456 457 9.553418 CAAACAAAACACATATCATACGATGAA 57.447 29.630 0.00 0.00 43.50 2.57
491 492 8.713737 AACCTCAAGTAAAATTACCGATAGAC 57.286 34.615 0.00 0.00 39.76 2.59
492 493 7.844009 ACCTCAAGTAAAATTACCGATAGACA 58.156 34.615 0.00 0.00 39.76 3.41
493 494 8.316214 ACCTCAAGTAAAATTACCGATAGACAA 58.684 33.333 0.00 0.00 39.76 3.18
494 495 9.158233 CCTCAAGTAAAATTACCGATAGACAAA 57.842 33.333 0.00 0.00 39.76 2.83
504 505 9.893305 AATTACCGATAGACAAAAACAAAAGAG 57.107 29.630 0.00 0.00 39.76 2.85
505 506 8.665643 TTACCGATAGACAAAAACAAAAGAGA 57.334 30.769 0.00 0.00 39.76 3.10
506 507 7.190920 ACCGATAGACAAAAACAAAAGAGAG 57.809 36.000 0.00 0.00 39.76 3.20
507 508 6.204882 ACCGATAGACAAAAACAAAAGAGAGG 59.795 38.462 0.00 0.00 39.76 3.69
514 515 5.129320 ACAAAAACAAAAGAGAGGATGCCTT 59.871 36.000 0.00 0.00 31.76 4.35
535 536 1.627329 AGACCAAGCTCAAGCATCTGA 59.373 47.619 4.59 0.00 45.16 3.27
542 545 1.202734 GCTCAAGCATCTGATGGGCTA 60.203 52.381 18.60 0.00 37.58 3.93
543 546 2.552591 GCTCAAGCATCTGATGGGCTAT 60.553 50.000 18.60 0.00 37.58 2.97
544 547 3.752665 CTCAAGCATCTGATGGGCTATT 58.247 45.455 18.60 0.00 36.76 1.73
545 548 3.748083 TCAAGCATCTGATGGGCTATTC 58.252 45.455 18.60 0.92 36.76 1.75
622 625 9.588774 CAAATTAGTGCAAGTTGATTTTGATTG 57.411 29.630 7.16 0.47 43.30 2.67
627 630 7.715657 AGTGCAAGTTGATTTTGATTGTAAGA 58.284 30.769 7.16 0.00 0.00 2.10
628 631 8.196771 AGTGCAAGTTGATTTTGATTGTAAGAA 58.803 29.630 7.16 0.00 0.00 2.52
661 664 9.846248 GTGACTTAATAAAATTGATGCAAGTCT 57.154 29.630 16.82 0.00 40.64 3.24
686 707 2.074547 TTTCTAGGCGACTTGTTCCG 57.925 50.000 0.00 0.00 43.67 4.30
704 833 3.455619 CCGAGTCGGTCAAGAAAAATG 57.544 47.619 23.83 0.00 42.73 2.32
706 835 3.991773 CCGAGTCGGTCAAGAAAAATGTA 59.008 43.478 23.83 0.00 42.73 2.29
711 840 7.410513 CGAGTCGGTCAAGAAAAATGTAGTAAG 60.411 40.741 4.10 0.00 0.00 2.34
712 841 7.439381 AGTCGGTCAAGAAAAATGTAGTAAGA 58.561 34.615 0.00 0.00 0.00 2.10
785 914 1.202382 GGTTAGCACGCTAGACCGAAT 60.202 52.381 11.86 0.00 0.00 3.34
797 932 5.163774 CGCTAGACCGAATAGTATAAGGGTC 60.164 48.000 14.76 14.76 43.26 4.46
842 980 1.201647 TCGGATTCCACGACAACTCTC 59.798 52.381 3.09 0.00 35.12 3.20
843 981 1.736032 CGGATTCCACGACAACTCTCC 60.736 57.143 3.09 0.00 0.00 3.71
1003 1171 2.225650 ACTCCCTCCACCTCAACTATGT 60.226 50.000 0.00 0.00 0.00 2.29
1004 1172 3.012502 ACTCCCTCCACCTCAACTATGTA 59.987 47.826 0.00 0.00 0.00 2.29
1005 1173 3.371965 TCCCTCCACCTCAACTATGTAC 58.628 50.000 0.00 0.00 0.00 2.90
1006 1174 3.012502 TCCCTCCACCTCAACTATGTACT 59.987 47.826 0.00 0.00 0.00 2.73
1007 1175 4.231195 TCCCTCCACCTCAACTATGTACTA 59.769 45.833 0.00 0.00 0.00 1.82
1181 1358 2.661537 CTGCAACAGCGTCGACCA 60.662 61.111 10.58 0.00 0.00 4.02
1242 1419 2.359230 AAGCTTCTCACGCCTGCC 60.359 61.111 0.00 0.00 0.00 4.85
1366 1862 7.009568 ACTTGACTAAATCGATCTCATTTGC 57.990 36.000 0.00 0.00 0.00 3.68
2201 2718 2.355756 CCAAACTATTGCCATCGGACTG 59.644 50.000 0.00 0.00 35.10 3.51
2202 2719 3.270027 CAAACTATTGCCATCGGACTGA 58.730 45.455 0.00 0.00 0.00 3.41
2203 2720 2.898729 ACTATTGCCATCGGACTGAG 57.101 50.000 0.00 0.00 0.00 3.35
2204 2721 2.111384 ACTATTGCCATCGGACTGAGT 58.889 47.619 0.00 0.00 0.00 3.41
2205 2722 3.296854 ACTATTGCCATCGGACTGAGTA 58.703 45.455 0.00 0.00 0.00 2.59
2206 2723 2.898729 ATTGCCATCGGACTGAGTAG 57.101 50.000 0.00 0.00 0.00 2.57
2331 2868 8.717717 TCTATCAAATGAATCTGATACCAAGGT 58.282 33.333 0.00 0.00 34.21 3.50
2356 2908 4.798924 GCTCATGGCAGTACTATGAAGGAG 60.799 50.000 7.94 6.38 44.68 3.69
2382 2934 5.480073 AGAGCATCAGTCAGAAAGTTCTACT 59.520 40.000 0.00 0.00 37.82 2.57
2550 4303 4.335647 AAGCACACAGGAGCCGGG 62.336 66.667 2.18 0.00 0.00 5.73
2555 4308 3.399181 CACAGGAGCCGGGCCTTA 61.399 66.667 17.02 0.00 32.12 2.69
2575 4328 1.372087 CCATCTTCGCAGGTGCTTCC 61.372 60.000 0.00 0.00 39.32 3.46
2590 4343 6.259608 CAGGTGCTTCCAAAATCTCTATAGTG 59.740 42.308 0.00 0.00 39.02 2.74
2624 4432 1.818959 GCCAATGCTGGGTGCTTCAA 61.819 55.000 0.00 0.00 43.74 2.69
2631 4439 0.468029 CTGGGTGCTTCAAAGGTGGT 60.468 55.000 0.00 0.00 0.00 4.16
2805 4613 2.761208 GGATCGGAGGTATGTCATAGGG 59.239 54.545 0.00 0.00 0.00 3.53
2853 4661 3.544684 TGCCATGTCCATGATGAAGTAC 58.455 45.455 8.82 0.00 41.20 2.73
3021 4937 3.607987 CGAGCCGCGCTTACTTCG 61.608 66.667 5.56 4.04 39.88 3.79
3022 4938 2.202570 GAGCCGCGCTTACTTCGA 60.203 61.111 5.56 0.00 39.88 3.71
3069 4985 4.276678 TGTTCATTGACAAGCTGGAGAAAG 59.723 41.667 0.00 0.00 0.00 2.62
3113 5035 3.849527 GGATATTTGCCAAGATCCCCTT 58.150 45.455 12.12 0.00 42.81 3.95
3208 5131 1.140312 TCCATTCCTGCAGGGTATCC 58.860 55.000 32.23 0.00 36.25 2.59
3246 5170 6.710597 ACGGTAGCAGATATCTTAAAGACA 57.289 37.500 1.33 0.00 0.00 3.41
3251 5175 8.144478 GGTAGCAGATATCTTAAAGACATGTCA 58.856 37.037 27.02 6.19 0.00 3.58
3317 5241 6.349280 CCAGCGAATTTTTCAGGAAGTGATAA 60.349 38.462 0.00 0.00 34.17 1.75
3318 5242 7.253422 CAGCGAATTTTTCAGGAAGTGATAAT 58.747 34.615 0.00 0.00 34.17 1.28
3320 5244 6.020360 GCGAATTTTTCAGGAAGTGATAATGC 60.020 38.462 0.00 0.00 34.17 3.56
3321 5245 6.195244 CGAATTTTTCAGGAAGTGATAATGCG 59.805 38.462 0.00 0.00 34.67 4.73
3322 5246 4.963276 TTTTCAGGAAGTGATAATGCGG 57.037 40.909 0.00 0.00 34.17 5.69
3323 5247 3.627395 TTCAGGAAGTGATAATGCGGT 57.373 42.857 0.00 0.00 34.17 5.68
3325 5249 1.860950 CAGGAAGTGATAATGCGGTCG 59.139 52.381 0.00 0.00 0.00 4.79
3327 5251 0.582005 GAAGTGATAATGCGGTCGGC 59.418 55.000 0.00 0.00 43.96 5.54
3398 5390 0.179073 CCCGTGCTCTCCTGTAATGG 60.179 60.000 0.00 0.00 0.00 3.16
3399 5391 0.537188 CCGTGCTCTCCTGTAATGGT 59.463 55.000 0.00 0.00 0.00 3.55
3400 5392 1.471676 CCGTGCTCTCCTGTAATGGTC 60.472 57.143 0.00 0.00 0.00 4.02
3401 5393 1.478510 CGTGCTCTCCTGTAATGGTCT 59.521 52.381 0.00 0.00 0.00 3.85
3495 7045 6.375455 GGACATGGAGAAAAGAGCTGAAATTA 59.625 38.462 0.00 0.00 0.00 1.40
3497 7047 9.113838 GACATGGAGAAAAGAGCTGAAATTATA 57.886 33.333 0.00 0.00 0.00 0.98
3498 7048 8.897752 ACATGGAGAAAAGAGCTGAAATTATAC 58.102 33.333 0.00 0.00 0.00 1.47
3499 7049 9.118300 CATGGAGAAAAGAGCTGAAATTATACT 57.882 33.333 0.00 0.00 0.00 2.12
3502 7052 7.990314 GGAGAAAAGAGCTGAAATTATACTCCT 59.010 37.037 0.00 0.00 36.01 3.69
3505 7055 7.872113 AAAGAGCTGAAATTATACTCCTTGG 57.128 36.000 0.00 0.00 0.00 3.61
3507 7057 7.200434 AGAGCTGAAATTATACTCCTTGGAA 57.800 36.000 0.00 0.00 0.00 3.53
3509 7059 5.817816 AGCTGAAATTATACTCCTTGGAACG 59.182 40.000 0.00 0.00 0.00 3.95
3511 7061 6.315393 GCTGAAATTATACTCCTTGGAACGAA 59.685 38.462 0.00 0.00 0.00 3.85
3540 7492 1.901591 CATGTGAGTTCCAGTTGCCT 58.098 50.000 0.00 0.00 0.00 4.75
3571 7535 9.132521 CTGAATTTTGTTTCTCATAAGCGAAAT 57.867 29.630 0.00 0.00 31.80 2.17
3580 7554 1.939934 CATAAGCGAAATCGAAGGGCA 59.060 47.619 7.06 0.00 43.02 5.36
3624 7792 6.070846 GCACGAGCAATTTTGAAAGATTAC 57.929 37.500 0.00 0.00 41.58 1.89
3654 7822 7.119699 TGTTCAATTCAACAGAGCGAATAGATT 59.880 33.333 0.00 0.00 32.36 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.102313 CCTTCTTTTTGTCTTGTCCACAAC 58.898 41.667 0.00 0.00 33.42 3.32
1 2 5.013547 TCCTTCTTTTTGTCTTGTCCACAA 58.986 37.500 0.00 0.00 31.76 3.33
2 3 4.594970 TCCTTCTTTTTGTCTTGTCCACA 58.405 39.130 0.00 0.00 0.00 4.17
5 6 6.937465 ACTATCTCCTTCTTTTTGTCTTGTCC 59.063 38.462 0.00 0.00 0.00 4.02
7 8 7.740805 AGACTATCTCCTTCTTTTTGTCTTGT 58.259 34.615 0.00 0.00 0.00 3.16
8 9 7.875041 TGAGACTATCTCCTTCTTTTTGTCTTG 59.125 37.037 3.45 0.00 42.73 3.02
9 10 7.875554 GTGAGACTATCTCCTTCTTTTTGTCTT 59.124 37.037 3.45 0.00 42.73 3.01
10 11 7.015682 TGTGAGACTATCTCCTTCTTTTTGTCT 59.984 37.037 3.45 0.00 42.73 3.41
11 12 7.155328 TGTGAGACTATCTCCTTCTTTTTGTC 58.845 38.462 3.45 0.00 42.73 3.18
12 13 7.067496 TGTGAGACTATCTCCTTCTTTTTGT 57.933 36.000 3.45 0.00 42.73 2.83
13 14 7.821359 TGATGTGAGACTATCTCCTTCTTTTTG 59.179 37.037 3.45 0.00 42.73 2.44
14 15 7.911651 TGATGTGAGACTATCTCCTTCTTTTT 58.088 34.615 3.45 0.00 42.73 1.94
15 16 7.487822 TGATGTGAGACTATCTCCTTCTTTT 57.512 36.000 3.45 0.00 42.73 2.27
16 17 7.180051 AGTTGATGTGAGACTATCTCCTTCTTT 59.820 37.037 3.45 0.00 42.73 2.52
17 18 6.667414 AGTTGATGTGAGACTATCTCCTTCTT 59.333 38.462 3.45 0.00 42.73 2.52
18 19 6.194235 AGTTGATGTGAGACTATCTCCTTCT 58.806 40.000 3.45 0.00 42.73 2.85
19 20 6.463995 AGTTGATGTGAGACTATCTCCTTC 57.536 41.667 3.45 4.17 42.73 3.46
20 21 6.549364 CCTAGTTGATGTGAGACTATCTCCTT 59.451 42.308 3.45 0.00 42.73 3.36
21 22 6.068010 CCTAGTTGATGTGAGACTATCTCCT 58.932 44.000 3.45 0.00 42.73 3.69
22 23 5.278758 GCCTAGTTGATGTGAGACTATCTCC 60.279 48.000 3.45 0.00 42.73 3.71
23 24 5.561919 CGCCTAGTTGATGTGAGACTATCTC 60.562 48.000 0.00 0.00 43.65 2.75
24 25 4.277174 CGCCTAGTTGATGTGAGACTATCT 59.723 45.833 0.00 0.00 0.00 1.98
25 26 4.036971 ACGCCTAGTTGATGTGAGACTATC 59.963 45.833 0.00 0.00 0.00 2.08
26 27 3.954904 ACGCCTAGTTGATGTGAGACTAT 59.045 43.478 0.00 0.00 0.00 2.12
27 28 3.353557 ACGCCTAGTTGATGTGAGACTA 58.646 45.455 0.00 0.00 0.00 2.59
28 29 2.171840 ACGCCTAGTTGATGTGAGACT 58.828 47.619 0.00 0.00 0.00 3.24
29 30 2.656560 ACGCCTAGTTGATGTGAGAC 57.343 50.000 0.00 0.00 0.00 3.36
30 31 3.951680 TGATACGCCTAGTTGATGTGAGA 59.048 43.478 0.00 0.00 0.00 3.27
31 32 4.307443 TGATACGCCTAGTTGATGTGAG 57.693 45.455 0.00 0.00 0.00 3.51
32 33 4.081917 TGTTGATACGCCTAGTTGATGTGA 60.082 41.667 0.00 0.00 0.00 3.58
33 34 4.180817 TGTTGATACGCCTAGTTGATGTG 58.819 43.478 0.00 0.00 0.00 3.21
34 35 4.433615 CTGTTGATACGCCTAGTTGATGT 58.566 43.478 0.00 0.00 0.00 3.06
35 36 3.804325 CCTGTTGATACGCCTAGTTGATG 59.196 47.826 0.00 0.00 0.00 3.07
36 37 3.741388 GCCTGTTGATACGCCTAGTTGAT 60.741 47.826 0.00 0.00 0.00 2.57
37 38 2.418197 GCCTGTTGATACGCCTAGTTGA 60.418 50.000 0.00 0.00 0.00 3.18
38 39 1.933853 GCCTGTTGATACGCCTAGTTG 59.066 52.381 0.00 0.00 0.00 3.16
39 40 1.831736 AGCCTGTTGATACGCCTAGTT 59.168 47.619 0.00 0.00 0.00 2.24
40 41 1.486211 AGCCTGTTGATACGCCTAGT 58.514 50.000 0.00 0.00 0.00 2.57
41 42 3.579709 CATAGCCTGTTGATACGCCTAG 58.420 50.000 0.00 0.00 0.00 3.02
42 43 2.299013 CCATAGCCTGTTGATACGCCTA 59.701 50.000 0.00 0.00 0.00 3.93
43 44 1.070758 CCATAGCCTGTTGATACGCCT 59.929 52.381 0.00 0.00 0.00 5.52
44 45 1.070134 TCCATAGCCTGTTGATACGCC 59.930 52.381 0.00 0.00 0.00 5.68
45 46 2.035961 TCTCCATAGCCTGTTGATACGC 59.964 50.000 0.00 0.00 0.00 4.42
46 47 4.219507 AGATCTCCATAGCCTGTTGATACG 59.780 45.833 0.00 0.00 0.00 3.06
47 48 5.244851 TGAGATCTCCATAGCCTGTTGATAC 59.755 44.000 20.03 0.00 0.00 2.24
48 49 5.397360 TGAGATCTCCATAGCCTGTTGATA 58.603 41.667 20.03 0.00 0.00 2.15
49 50 4.229639 TGAGATCTCCATAGCCTGTTGAT 58.770 43.478 20.03 0.00 0.00 2.57
50 51 3.646534 TGAGATCTCCATAGCCTGTTGA 58.353 45.455 20.03 0.00 0.00 3.18
51 52 4.412796 TTGAGATCTCCATAGCCTGTTG 57.587 45.455 20.03 0.00 0.00 3.33
52 53 5.189180 GTTTTGAGATCTCCATAGCCTGTT 58.811 41.667 20.03 0.00 0.00 3.16
53 54 4.225942 TGTTTTGAGATCTCCATAGCCTGT 59.774 41.667 20.03 0.00 0.00 4.00
54 55 4.774124 TGTTTTGAGATCTCCATAGCCTG 58.226 43.478 20.03 0.00 0.00 4.85
55 56 5.441718 TTGTTTTGAGATCTCCATAGCCT 57.558 39.130 20.03 0.00 0.00 4.58
56 57 5.824624 TGATTGTTTTGAGATCTCCATAGCC 59.175 40.000 20.03 4.09 0.00 3.93
57 58 6.932356 TGATTGTTTTGAGATCTCCATAGC 57.068 37.500 20.03 7.80 0.00 2.97
59 60 9.565090 CCTTATGATTGTTTTGAGATCTCCATA 57.435 33.333 20.03 13.49 0.00 2.74
60 61 8.277197 TCCTTATGATTGTTTTGAGATCTCCAT 58.723 33.333 20.03 14.40 0.00 3.41
61 62 7.632861 TCCTTATGATTGTTTTGAGATCTCCA 58.367 34.615 20.03 6.31 0.00 3.86
62 63 8.511604 TTCCTTATGATTGTTTTGAGATCTCC 57.488 34.615 20.03 5.06 0.00 3.71
64 65 9.690913 TGATTCCTTATGATTGTTTTGAGATCT 57.309 29.630 0.00 0.00 0.00 2.75
67 68 9.912634 GTTTGATTCCTTATGATTGTTTTGAGA 57.087 29.630 0.00 0.00 0.00 3.27
68 69 9.918630 AGTTTGATTCCTTATGATTGTTTTGAG 57.081 29.630 0.00 0.00 0.00 3.02
73 74 9.300681 TGAGAAGTTTGATTCCTTATGATTGTT 57.699 29.630 0.00 0.00 0.00 2.83
74 75 8.868522 TGAGAAGTTTGATTCCTTATGATTGT 57.131 30.769 0.00 0.00 0.00 2.71
87 88 9.399797 TGCATTGAATACTATGAGAAGTTTGAT 57.600 29.630 0.00 0.00 32.61 2.57
88 89 8.668353 GTGCATTGAATACTATGAGAAGTTTGA 58.332 33.333 0.00 0.00 32.61 2.69
89 90 8.671921 AGTGCATTGAATACTATGAGAAGTTTG 58.328 33.333 0.00 0.00 32.61 2.93
90 91 8.798859 AGTGCATTGAATACTATGAGAAGTTT 57.201 30.769 0.00 0.00 32.61 2.66
91 92 8.798859 AAGTGCATTGAATACTATGAGAAGTT 57.201 30.769 0.00 0.00 32.61 2.66
92 93 8.798859 AAAGTGCATTGAATACTATGAGAAGT 57.201 30.769 0.00 0.00 32.61 3.01
105 106 9.624697 GACAACTTTCATATAAAGTGCATTGAA 57.375 29.630 4.05 0.00 40.10 2.69
106 107 8.791675 TGACAACTTTCATATAAAGTGCATTGA 58.208 29.630 4.05 0.00 40.10 2.57
107 108 8.969121 TGACAACTTTCATATAAAGTGCATTG 57.031 30.769 4.05 2.18 40.10 2.82
200 201 9.624373 ATTGATGAACTCTTATGCTTCACTTAT 57.376 29.630 0.00 0.00 0.00 1.73
201 202 9.453572 AATTGATGAACTCTTATGCTTCACTTA 57.546 29.630 0.00 0.00 0.00 2.24
202 203 7.934855 ATTGATGAACTCTTATGCTTCACTT 57.065 32.000 0.00 0.00 0.00 3.16
203 204 7.934855 AATTGATGAACTCTTATGCTTCACT 57.065 32.000 0.00 0.00 0.00 3.41
204 205 8.457261 AGAAATTGATGAACTCTTATGCTTCAC 58.543 33.333 0.00 0.00 0.00 3.18
205 206 8.571461 AGAAATTGATGAACTCTTATGCTTCA 57.429 30.769 0.00 0.00 0.00 3.02
223 224 9.620660 GGCGGTGGTTTTATTATATAGAAATTG 57.379 33.333 0.00 0.00 0.00 2.32
224 225 8.508875 CGGCGGTGGTTTTATTATATAGAAATT 58.491 33.333 0.00 0.00 0.00 1.82
225 226 7.662669 ACGGCGGTGGTTTTATTATATAGAAAT 59.337 33.333 13.24 0.00 0.00 2.17
226 227 6.991531 ACGGCGGTGGTTTTATTATATAGAAA 59.008 34.615 13.24 0.00 0.00 2.52
227 228 6.424509 CACGGCGGTGGTTTTATTATATAGAA 59.575 38.462 16.16 0.00 40.58 2.10
228 229 5.927689 CACGGCGGTGGTTTTATTATATAGA 59.072 40.000 16.16 0.00 40.58 1.98
229 230 5.390145 GCACGGCGGTGGTTTTATTATATAG 60.390 44.000 23.86 0.00 44.54 1.31
230 231 4.451774 GCACGGCGGTGGTTTTATTATATA 59.548 41.667 23.86 0.00 44.54 0.86
231 232 3.251487 GCACGGCGGTGGTTTTATTATAT 59.749 43.478 23.86 0.00 44.54 0.86
232 233 2.613133 GCACGGCGGTGGTTTTATTATA 59.387 45.455 23.86 0.00 44.54 0.98
233 234 1.402613 GCACGGCGGTGGTTTTATTAT 59.597 47.619 23.86 0.00 44.54 1.28
234 235 0.803740 GCACGGCGGTGGTTTTATTA 59.196 50.000 23.86 0.00 44.54 0.98
235 236 1.582461 GCACGGCGGTGGTTTTATT 59.418 52.632 23.86 0.00 44.54 1.40
236 237 3.270000 GCACGGCGGTGGTTTTAT 58.730 55.556 23.86 0.00 44.54 1.40
242 243 1.231958 TTTTTAGAGCACGGCGGTGG 61.232 55.000 23.86 7.81 44.54 4.61
244 245 0.034337 TCTTTTTAGAGCACGGCGGT 59.966 50.000 13.24 0.00 0.00 5.68
245 246 1.369625 ATCTTTTTAGAGCACGGCGG 58.630 50.000 13.24 0.66 0.00 6.13
246 247 5.462398 ACTTATATCTTTTTAGAGCACGGCG 59.538 40.000 4.80 4.80 0.00 6.46
247 248 6.479001 TCACTTATATCTTTTTAGAGCACGGC 59.521 38.462 0.00 0.00 0.00 5.68
248 249 8.420374 TTCACTTATATCTTTTTAGAGCACGG 57.580 34.615 0.00 0.00 0.00 4.94
249 250 8.058915 GCTTCACTTATATCTTTTTAGAGCACG 58.941 37.037 0.00 0.00 0.00 5.34
250 251 8.883731 TGCTTCACTTATATCTTTTTAGAGCAC 58.116 33.333 0.00 0.00 0.00 4.40
251 252 8.883731 GTGCTTCACTTATATCTTTTTAGAGCA 58.116 33.333 0.00 0.00 0.00 4.26
252 253 9.103861 AGTGCTTCACTTATATCTTTTTAGAGC 57.896 33.333 0.00 0.00 42.59 4.09
257 258 9.103861 GCTCTAGTGCTTCACTTATATCTTTTT 57.896 33.333 9.52 0.00 42.59 1.94
258 259 8.260818 TGCTCTAGTGCTTCACTTATATCTTTT 58.739 33.333 17.08 0.00 42.59 2.27
259 260 7.786030 TGCTCTAGTGCTTCACTTATATCTTT 58.214 34.615 17.08 0.00 42.59 2.52
260 261 7.353414 TGCTCTAGTGCTTCACTTATATCTT 57.647 36.000 17.08 0.00 42.59 2.40
261 262 6.968263 TGCTCTAGTGCTTCACTTATATCT 57.032 37.500 17.08 0.00 42.59 1.98
262 263 8.425577 TTTTGCTCTAGTGCTTCACTTATATC 57.574 34.615 17.08 0.00 42.59 1.63
263 264 8.970859 ATTTTGCTCTAGTGCTTCACTTATAT 57.029 30.769 17.08 0.00 42.59 0.86
264 265 8.668353 CAATTTTGCTCTAGTGCTTCACTTATA 58.332 33.333 17.08 0.00 42.59 0.98
265 266 7.533426 CAATTTTGCTCTAGTGCTTCACTTAT 58.467 34.615 17.08 0.39 42.59 1.73
266 267 6.902341 CAATTTTGCTCTAGTGCTTCACTTA 58.098 36.000 17.08 0.00 42.59 2.24
267 268 5.766222 CAATTTTGCTCTAGTGCTTCACTT 58.234 37.500 17.08 3.17 42.59 3.16
287 288 9.618890 TCACTTATATCTTTTGAGCTAAGCAAT 57.381 29.630 0.00 0.00 33.34 3.56
288 289 9.448438 TTCACTTATATCTTTTGAGCTAAGCAA 57.552 29.630 0.00 0.00 33.34 3.91
289 290 9.102757 CTTCACTTATATCTTTTGAGCTAAGCA 57.897 33.333 0.00 0.00 33.34 3.91
290 291 8.067189 GCTTCACTTATATCTTTTGAGCTAAGC 58.933 37.037 0.00 0.00 33.34 3.09
291 292 9.102757 TGCTTCACTTATATCTTTTGAGCTAAG 57.897 33.333 0.00 0.00 34.85 2.18
292 293 8.883731 GTGCTTCACTTATATCTTTTGAGCTAA 58.116 33.333 0.00 0.00 0.00 3.09
293 294 8.040727 TGTGCTTCACTTATATCTTTTGAGCTA 58.959 33.333 0.00 0.00 35.11 3.32
294 295 6.881065 TGTGCTTCACTTATATCTTTTGAGCT 59.119 34.615 0.00 0.00 35.11 4.09
295 296 7.076842 TGTGCTTCACTTATATCTTTTGAGC 57.923 36.000 0.00 0.00 35.11 4.26
300 301 9.177608 TGCTTTATGTGCTTCACTTATATCTTT 57.822 29.630 0.00 0.00 35.11 2.52
301 302 8.737168 TGCTTTATGTGCTTCACTTATATCTT 57.263 30.769 0.00 0.00 35.11 2.40
302 303 8.915057 ATGCTTTATGTGCTTCACTTATATCT 57.085 30.769 0.00 0.00 35.11 1.98
303 304 9.604626 GAATGCTTTATGTGCTTCACTTATATC 57.395 33.333 0.00 0.00 35.11 1.63
304 305 9.347240 AGAATGCTTTATGTGCTTCACTTATAT 57.653 29.630 0.00 0.00 35.11 0.86
305 306 8.737168 AGAATGCTTTATGTGCTTCACTTATA 57.263 30.769 0.00 0.00 35.11 0.98
306 307 7.636150 AGAATGCTTTATGTGCTTCACTTAT 57.364 32.000 0.00 0.00 35.11 1.73
307 308 8.560355 TTAGAATGCTTTATGTGCTTCACTTA 57.440 30.769 0.00 0.00 35.11 2.24
308 309 5.972107 AGAATGCTTTATGTGCTTCACTT 57.028 34.783 0.00 0.00 35.11 3.16
309 310 7.636150 ATTAGAATGCTTTATGTGCTTCACT 57.364 32.000 0.00 0.00 35.11 3.41
310 311 9.787532 TTTATTAGAATGCTTTATGTGCTTCAC 57.212 29.630 0.00 0.00 34.56 3.18
314 315 9.956720 GTGATTTATTAGAATGCTTTATGTGCT 57.043 29.630 0.00 0.00 0.00 4.40
315 316 8.895845 CGTGATTTATTAGAATGCTTTATGTGC 58.104 33.333 0.00 0.00 0.00 4.57
329 330 9.864034 GGACACACATAAATCGTGATTTATTAG 57.136 33.333 20.00 17.40 46.26 1.73
330 331 8.832521 GGGACACACATAAATCGTGATTTATTA 58.167 33.333 20.00 2.75 46.26 0.98
331 332 7.556275 AGGGACACACATAAATCGTGATTTATT 59.444 33.333 20.00 9.55 46.26 1.40
333 334 6.411376 AGGGACACACATAAATCGTGATTTA 58.589 36.000 15.27 15.27 44.47 1.40
334 335 5.253330 AGGGACACACATAAATCGTGATTT 58.747 37.500 12.10 12.10 42.95 2.17
335 336 4.843728 AGGGACACACATAAATCGTGATT 58.156 39.130 0.00 0.00 37.80 2.57
336 337 4.162320 AGAGGGACACACATAAATCGTGAT 59.838 41.667 0.00 0.00 37.80 3.06
337 338 3.513912 AGAGGGACACACATAAATCGTGA 59.486 43.478 0.00 0.00 37.80 4.35
338 339 3.861840 AGAGGGACACACATAAATCGTG 58.138 45.455 0.00 0.00 40.32 4.35
339 340 3.513912 TGAGAGGGACACACATAAATCGT 59.486 43.478 0.00 0.00 0.00 3.73
340 341 4.123497 TGAGAGGGACACACATAAATCG 57.877 45.455 0.00 0.00 0.00 3.34
341 342 6.127897 CCTTTTGAGAGGGACACACATAAATC 60.128 42.308 0.00 0.00 32.94 2.17
342 343 5.711976 CCTTTTGAGAGGGACACACATAAAT 59.288 40.000 0.00 0.00 32.94 1.40
343 344 5.070001 CCTTTTGAGAGGGACACACATAAA 58.930 41.667 0.00 0.00 32.94 1.40
344 345 4.104102 ACCTTTTGAGAGGGACACACATAA 59.896 41.667 0.00 0.00 41.31 1.90
345 346 3.650942 ACCTTTTGAGAGGGACACACATA 59.349 43.478 0.00 0.00 41.31 2.29
346 347 2.443255 ACCTTTTGAGAGGGACACACAT 59.557 45.455 0.00 0.00 41.31 3.21
347 348 1.843851 ACCTTTTGAGAGGGACACACA 59.156 47.619 0.00 0.00 41.31 3.72
348 349 2.222027 CACCTTTTGAGAGGGACACAC 58.778 52.381 0.00 0.00 41.31 3.82
349 350 1.843851 ACACCTTTTGAGAGGGACACA 59.156 47.619 0.00 0.00 41.31 3.72
350 351 2.222027 CACACCTTTTGAGAGGGACAC 58.778 52.381 0.00 0.00 41.31 3.67
351 352 1.843851 ACACACCTTTTGAGAGGGACA 59.156 47.619 0.00 0.00 41.31 4.02
352 353 2.222027 CACACACCTTTTGAGAGGGAC 58.778 52.381 0.00 0.00 41.31 4.46
353 354 1.476833 GCACACACCTTTTGAGAGGGA 60.477 52.381 0.00 0.00 41.31 4.20
354 355 0.954452 GCACACACCTTTTGAGAGGG 59.046 55.000 0.00 0.00 41.31 4.30
355 356 1.605710 CTGCACACACCTTTTGAGAGG 59.394 52.381 0.00 0.00 42.75 3.69
356 357 1.002033 GCTGCACACACCTTTTGAGAG 60.002 52.381 0.00 0.00 0.00 3.20
357 358 1.024271 GCTGCACACACCTTTTGAGA 58.976 50.000 0.00 0.00 0.00 3.27
358 359 0.740149 TGCTGCACACACCTTTTGAG 59.260 50.000 0.00 0.00 0.00 3.02
359 360 1.180907 TTGCTGCACACACCTTTTGA 58.819 45.000 0.00 0.00 0.00 2.69
360 361 1.928503 CTTTGCTGCACACACCTTTTG 59.071 47.619 0.00 0.00 0.00 2.44
361 362 1.824230 TCTTTGCTGCACACACCTTTT 59.176 42.857 0.00 0.00 0.00 2.27
362 363 1.473258 TCTTTGCTGCACACACCTTT 58.527 45.000 0.00 0.00 0.00 3.11
363 364 1.338973 CATCTTTGCTGCACACACCTT 59.661 47.619 0.00 0.00 0.00 3.50
364 365 0.956633 CATCTTTGCTGCACACACCT 59.043 50.000 0.00 0.00 0.00 4.00
365 366 0.953727 TCATCTTTGCTGCACACACC 59.046 50.000 0.00 0.00 0.00 4.16
366 367 2.984471 CAATCATCTTTGCTGCACACAC 59.016 45.455 0.00 0.00 0.00 3.82
367 368 2.624364 ACAATCATCTTTGCTGCACACA 59.376 40.909 0.00 0.00 0.00 3.72
368 369 2.984471 CACAATCATCTTTGCTGCACAC 59.016 45.455 0.00 0.00 0.00 3.82
369 370 2.885894 TCACAATCATCTTTGCTGCACA 59.114 40.909 0.00 0.00 0.00 4.57
370 371 3.240069 GTCACAATCATCTTTGCTGCAC 58.760 45.455 0.00 0.00 0.00 4.57
371 372 2.885894 TGTCACAATCATCTTTGCTGCA 59.114 40.909 0.00 0.00 0.00 4.41
372 373 3.564235 TGTCACAATCATCTTTGCTGC 57.436 42.857 0.00 0.00 0.00 5.25
373 374 8.523523 TTAAATTGTCACAATCATCTTTGCTG 57.476 30.769 2.74 0.00 0.00 4.41
374 375 9.545105 TTTTAAATTGTCACAATCATCTTTGCT 57.455 25.926 2.74 0.00 0.00 3.91
400 401 9.878599 CGTCTTGTATGATTTAAGTCTTTGTTT 57.121 29.630 0.00 0.00 0.00 2.83
401 402 8.015658 GCGTCTTGTATGATTTAAGTCTTTGTT 58.984 33.333 0.00 0.00 0.00 2.83
402 403 7.387948 AGCGTCTTGTATGATTTAAGTCTTTGT 59.612 33.333 0.00 0.00 0.00 2.83
403 404 7.743104 AGCGTCTTGTATGATTTAAGTCTTTG 58.257 34.615 0.00 0.00 0.00 2.77
404 405 7.064728 GGAGCGTCTTGTATGATTTAAGTCTTT 59.935 37.037 0.00 0.00 0.00 2.52
405 406 6.535508 GGAGCGTCTTGTATGATTTAAGTCTT 59.464 38.462 0.00 0.00 0.00 3.01
406 407 6.043411 GGAGCGTCTTGTATGATTTAAGTCT 58.957 40.000 0.00 0.00 0.00 3.24
407 408 5.810587 TGGAGCGTCTTGTATGATTTAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
408 409 5.730550 TGGAGCGTCTTGTATGATTTAAGT 58.269 37.500 0.00 0.00 0.00 2.24
409 410 6.662414 TTGGAGCGTCTTGTATGATTTAAG 57.338 37.500 0.00 0.00 0.00 1.85
410 411 6.428465 TGTTTGGAGCGTCTTGTATGATTTAA 59.572 34.615 0.00 0.00 0.00 1.52
411 412 5.935206 TGTTTGGAGCGTCTTGTATGATTTA 59.065 36.000 0.00 0.00 0.00 1.40
412 413 4.759693 TGTTTGGAGCGTCTTGTATGATTT 59.240 37.500 0.00 0.00 0.00 2.17
413 414 4.323417 TGTTTGGAGCGTCTTGTATGATT 58.677 39.130 0.00 0.00 0.00 2.57
414 415 3.937814 TGTTTGGAGCGTCTTGTATGAT 58.062 40.909 0.00 0.00 0.00 2.45
415 416 3.394674 TGTTTGGAGCGTCTTGTATGA 57.605 42.857 0.00 0.00 0.00 2.15
416 417 4.481930 TTTGTTTGGAGCGTCTTGTATG 57.518 40.909 0.00 0.00 0.00 2.39
417 418 4.336993 TGTTTTGTTTGGAGCGTCTTGTAT 59.663 37.500 0.00 0.00 0.00 2.29
418 419 3.690139 TGTTTTGTTTGGAGCGTCTTGTA 59.310 39.130 0.00 0.00 0.00 2.41
419 420 2.490115 TGTTTTGTTTGGAGCGTCTTGT 59.510 40.909 0.00 0.00 0.00 3.16
420 421 2.851824 GTGTTTTGTTTGGAGCGTCTTG 59.148 45.455 0.00 0.00 0.00 3.02
421 422 2.490115 TGTGTTTTGTTTGGAGCGTCTT 59.510 40.909 0.00 0.00 0.00 3.01
422 423 2.088423 TGTGTTTTGTTTGGAGCGTCT 58.912 42.857 0.00 0.00 0.00 4.18
423 424 2.553079 TGTGTTTTGTTTGGAGCGTC 57.447 45.000 0.00 0.00 0.00 5.19
424 425 4.277174 TGATATGTGTTTTGTTTGGAGCGT 59.723 37.500 0.00 0.00 0.00 5.07
425 426 4.793071 TGATATGTGTTTTGTTTGGAGCG 58.207 39.130 0.00 0.00 0.00 5.03
426 427 6.468956 CGTATGATATGTGTTTTGTTTGGAGC 59.531 38.462 0.00 0.00 0.00 4.70
427 428 7.747888 TCGTATGATATGTGTTTTGTTTGGAG 58.252 34.615 0.00 0.00 0.00 3.86
428 429 7.674471 TCGTATGATATGTGTTTTGTTTGGA 57.326 32.000 0.00 0.00 0.00 3.53
429 430 8.180920 TCATCGTATGATATGTGTTTTGTTTGG 58.819 33.333 0.00 0.00 33.59 3.28
430 431 9.553418 TTCATCGTATGATATGTGTTTTGTTTG 57.447 29.630 0.00 0.00 39.39 2.93
465 466 9.807649 GTCTATCGGTAATTTTACTTGAGGTTA 57.192 33.333 0.87 0.00 34.16 2.85
466 467 8.316214 TGTCTATCGGTAATTTTACTTGAGGTT 58.684 33.333 0.87 0.00 34.16 3.50
467 468 7.844009 TGTCTATCGGTAATTTTACTTGAGGT 58.156 34.615 0.87 0.00 34.16 3.85
468 469 8.712285 TTGTCTATCGGTAATTTTACTTGAGG 57.288 34.615 0.87 0.00 34.16 3.86
478 479 9.893305 CTCTTTTGTTTTTGTCTATCGGTAATT 57.107 29.630 0.00 0.00 0.00 1.40
479 480 9.280174 TCTCTTTTGTTTTTGTCTATCGGTAAT 57.720 29.630 0.00 0.00 0.00 1.89
480 481 8.665643 TCTCTTTTGTTTTTGTCTATCGGTAA 57.334 30.769 0.00 0.00 0.00 2.85
481 482 7.386848 CCTCTCTTTTGTTTTTGTCTATCGGTA 59.613 37.037 0.00 0.00 0.00 4.02
482 483 6.204882 CCTCTCTTTTGTTTTTGTCTATCGGT 59.795 38.462 0.00 0.00 0.00 4.69
483 484 6.426937 TCCTCTCTTTTGTTTTTGTCTATCGG 59.573 38.462 0.00 0.00 0.00 4.18
484 485 7.421530 TCCTCTCTTTTGTTTTTGTCTATCG 57.578 36.000 0.00 0.00 0.00 2.92
485 486 7.752686 GCATCCTCTCTTTTGTTTTTGTCTATC 59.247 37.037 0.00 0.00 0.00 2.08
486 487 7.309438 GGCATCCTCTCTTTTGTTTTTGTCTAT 60.309 37.037 0.00 0.00 0.00 1.98
487 488 6.016276 GGCATCCTCTCTTTTGTTTTTGTCTA 60.016 38.462 0.00 0.00 0.00 2.59
488 489 5.221322 GGCATCCTCTCTTTTGTTTTTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
489 490 4.984785 GGCATCCTCTCTTTTGTTTTTGTC 59.015 41.667 0.00 0.00 0.00 3.18
490 491 4.651045 AGGCATCCTCTCTTTTGTTTTTGT 59.349 37.500 0.00 0.00 0.00 2.83
491 492 5.205759 AGGCATCCTCTCTTTTGTTTTTG 57.794 39.130 0.00 0.00 0.00 2.44
492 493 5.876651 AAGGCATCCTCTCTTTTGTTTTT 57.123 34.783 0.00 0.00 30.89 1.94
493 494 6.207614 GTCTAAGGCATCCTCTCTTTTGTTTT 59.792 38.462 0.00 0.00 30.89 2.43
494 495 5.707764 GTCTAAGGCATCCTCTCTTTTGTTT 59.292 40.000 0.00 0.00 30.89 2.83
495 496 5.249420 GTCTAAGGCATCCTCTCTTTTGTT 58.751 41.667 0.00 0.00 30.89 2.83
496 497 4.323868 GGTCTAAGGCATCCTCTCTTTTGT 60.324 45.833 0.00 0.00 30.89 2.83
497 498 4.195416 GGTCTAAGGCATCCTCTCTTTTG 58.805 47.826 0.00 0.00 30.89 2.44
498 499 3.846588 TGGTCTAAGGCATCCTCTCTTTT 59.153 43.478 0.00 0.00 30.89 2.27
499 500 3.454858 TGGTCTAAGGCATCCTCTCTTT 58.545 45.455 0.00 0.00 30.89 2.52
500 501 3.121929 TGGTCTAAGGCATCCTCTCTT 57.878 47.619 0.00 0.00 30.89 2.85
501 502 2.856760 TGGTCTAAGGCATCCTCTCT 57.143 50.000 0.00 0.00 30.89 3.10
502 503 2.484594 GCTTGGTCTAAGGCATCCTCTC 60.485 54.545 0.00 0.00 36.87 3.20
503 504 1.488393 GCTTGGTCTAAGGCATCCTCT 59.512 52.381 0.00 0.00 36.87 3.69
504 505 1.488393 AGCTTGGTCTAAGGCATCCTC 59.512 52.381 0.00 0.00 36.87 3.71
505 506 1.488393 GAGCTTGGTCTAAGGCATCCT 59.512 52.381 0.00 0.00 36.87 3.24
506 507 1.210478 TGAGCTTGGTCTAAGGCATCC 59.790 52.381 0.00 0.00 36.87 3.51
507 508 2.698855 TGAGCTTGGTCTAAGGCATC 57.301 50.000 0.00 0.00 36.87 3.91
514 515 2.833943 TCAGATGCTTGAGCTTGGTCTA 59.166 45.455 4.44 0.00 42.66 2.59
535 536 3.368739 GCAACTGCAAAAGAATAGCCCAT 60.369 43.478 0.00 0.00 41.59 4.00
652 655 7.171678 GTCGCCTAGAAAAATATAGACTTGCAT 59.828 37.037 0.00 0.00 0.00 3.96
661 664 6.477688 CGGAACAAGTCGCCTAGAAAAATATA 59.522 38.462 0.00 0.00 0.00 0.86
670 674 0.526662 ACTCGGAACAAGTCGCCTAG 59.473 55.000 0.00 0.00 0.00 3.02
686 707 7.597743 TCTTACTACATTTTTCTTGACCGACTC 59.402 37.037 0.00 0.00 0.00 3.36
704 833 8.809478 GTCTCATCTCCGAAATTTTCTTACTAC 58.191 37.037 7.50 0.00 0.00 2.73
706 835 7.386851 TGTCTCATCTCCGAAATTTTCTTACT 58.613 34.615 7.50 0.00 0.00 2.24
711 840 5.107065 ACGTTGTCTCATCTCCGAAATTTTC 60.107 40.000 0.00 0.00 0.00 2.29
712 841 4.755123 ACGTTGTCTCATCTCCGAAATTTT 59.245 37.500 0.00 0.00 0.00 1.82
785 914 9.667107 CTCAAACTGAAATTGACCCTTATACTA 57.333 33.333 0.00 0.00 33.47 1.82
797 932 3.062042 GGCCAAGCTCAAACTGAAATTG 58.938 45.455 0.00 0.00 0.00 2.32
860 999 3.752339 CGCCTTGGGAGCTTTGGC 61.752 66.667 0.00 0.00 40.14 4.52
947 1108 2.186125 GTACTACGGGGTGCTGGC 59.814 66.667 0.00 0.00 0.00 4.85
1003 1171 4.127907 AGCTTGATCTCGATGTCGTAGTA 58.872 43.478 2.04 0.00 40.80 1.82
1004 1172 2.946329 AGCTTGATCTCGATGTCGTAGT 59.054 45.455 2.04 0.00 40.80 2.73
1005 1173 3.550561 GAGCTTGATCTCGATGTCGTAG 58.449 50.000 2.04 0.00 40.80 3.51
1006 1174 3.610786 GAGCTTGATCTCGATGTCGTA 57.389 47.619 2.04 0.00 40.80 3.43
1007 1175 2.483583 GAGCTTGATCTCGATGTCGT 57.516 50.000 2.04 0.00 40.80 4.34
1181 1358 1.534235 AGACCGCTGTTCCTGAGGT 60.534 57.895 0.00 0.00 38.06 3.85
1204 1381 3.474570 ATGGCAGGCCTCGACCTC 61.475 66.667 0.00 0.00 38.26 3.85
1295 1724 9.918630 AATCACAGTTGGATAATTCTTTTTGAG 57.081 29.630 0.00 0.00 0.00 3.02
1342 1838 7.009568 GCAAATGAGATCGATTTAGTCAAGT 57.990 36.000 0.00 0.00 0.00 3.16
2181 2698 3.270027 TCAGTCCGATGGCAATAGTTTG 58.730 45.455 0.00 0.00 35.85 2.93
2356 2908 2.697654 ACTTTCTGACTGATGCTCTGC 58.302 47.619 0.00 0.00 0.00 4.26
2382 2934 1.660167 CTGCAGAATCTTGATCGGCA 58.340 50.000 8.42 1.73 43.93 5.69
2550 4303 0.107654 ACCTGCGAAGATGGTAAGGC 60.108 55.000 0.00 0.00 33.33 4.35
2551 4304 1.656652 CACCTGCGAAGATGGTAAGG 58.343 55.000 0.00 0.00 33.72 2.69
2575 4328 4.332543 TGCAACGCCACTATAGAGATTTTG 59.667 41.667 6.78 5.45 0.00 2.44
2631 4439 2.567169 CAGTAACATCACACTGGGGAGA 59.433 50.000 0.00 0.00 38.79 3.71
2805 4613 7.550906 GTGGCCTGATAAATAAGTAGATCATCC 59.449 40.741 3.32 0.00 0.00 3.51
2853 4661 0.905357 CCTTGTACCTCCCAGACCAG 59.095 60.000 0.00 0.00 0.00 4.00
2977 4888 0.318445 GCAACAGCCTGCAAGAACAG 60.318 55.000 0.00 0.00 42.17 3.16
3018 4934 3.367932 GTCAGTGCATTCTTCGAATCGAA 59.632 43.478 17.53 17.53 43.75 3.71
3019 4935 2.923655 GTCAGTGCATTCTTCGAATCGA 59.076 45.455 0.00 0.00 0.00 3.59
3020 4936 2.029728 GGTCAGTGCATTCTTCGAATCG 59.970 50.000 0.00 0.00 0.00 3.34
3021 4937 2.029728 CGGTCAGTGCATTCTTCGAATC 59.970 50.000 0.00 0.00 0.00 2.52
3022 4938 2.002586 CGGTCAGTGCATTCTTCGAAT 58.997 47.619 0.00 0.00 0.00 3.34
3089 5011 3.575687 GGGGATCTTGGCAAATATCCTTG 59.424 47.826 27.46 6.81 38.51 3.61
3090 5012 3.468625 AGGGGATCTTGGCAAATATCCTT 59.531 43.478 27.46 18.76 38.51 3.36
3092 5014 3.532641 AGGGGATCTTGGCAAATATCC 57.467 47.619 23.64 23.64 38.00 2.59
3113 5035 0.322098 CACGGTTATGGTCTTGCCCA 60.322 55.000 0.00 0.00 39.27 5.36
3208 5131 4.051922 GCTACCGTAGACCAATTCATGAG 58.948 47.826 9.88 0.00 0.00 2.90
3246 5170 3.407698 TGTAATCAGCAACGGTTGACAT 58.592 40.909 24.20 9.07 37.06 3.06
3251 5175 4.518970 ACAAGATTGTAATCAGCAACGGTT 59.481 37.500 7.30 0.00 40.16 4.44
3317 5241 4.704833 ACAGCAAGCCGACCGCAT 62.705 61.111 0.00 0.00 41.38 4.73
3318 5242 4.927782 AACAGCAAGCCGACCGCA 62.928 61.111 0.00 0.00 41.38 5.69
3320 5244 2.058829 AAACAACAGCAAGCCGACCG 62.059 55.000 0.00 0.00 0.00 4.79
3321 5245 0.948678 TAAACAACAGCAAGCCGACC 59.051 50.000 0.00 0.00 0.00 4.79
3322 5246 1.602377 ACTAAACAACAGCAAGCCGAC 59.398 47.619 0.00 0.00 0.00 4.79
3323 5247 1.961793 ACTAAACAACAGCAAGCCGA 58.038 45.000 0.00 0.00 0.00 5.54
3325 5249 3.550842 CCAGAACTAAACAACAGCAAGCC 60.551 47.826 0.00 0.00 0.00 4.35
3327 5251 4.900635 ACCAGAACTAAACAACAGCAAG 57.099 40.909 0.00 0.00 0.00 4.01
3398 5390 1.957177 TGGACAGACAGACAGACAGAC 59.043 52.381 0.00 0.00 0.00 3.51
3399 5391 2.364972 TGGACAGACAGACAGACAGA 57.635 50.000 0.00 0.00 0.00 3.41
3400 5392 3.257873 AGATTGGACAGACAGACAGACAG 59.742 47.826 0.00 0.00 0.00 3.51
3401 5393 3.006217 CAGATTGGACAGACAGACAGACA 59.994 47.826 0.00 0.00 0.00 3.41
3495 7045 6.942976 TCAATACTTTCGTTCCAAGGAGTAT 58.057 36.000 0.00 0.00 0.00 2.12
3497 7047 5.223449 TCAATACTTTCGTTCCAAGGAGT 57.777 39.130 0.00 0.00 0.00 3.85
3498 7048 4.093556 GCTCAATACTTTCGTTCCAAGGAG 59.906 45.833 0.00 0.00 0.00 3.69
3499 7049 4.000988 GCTCAATACTTTCGTTCCAAGGA 58.999 43.478 0.00 0.00 0.00 3.36
3502 7052 4.759693 ACATGCTCAATACTTTCGTTCCAA 59.240 37.500 0.00 0.00 0.00 3.53
3505 7055 5.120830 ACTCACATGCTCAATACTTTCGTTC 59.879 40.000 0.00 0.00 0.00 3.95
3507 7057 4.569943 ACTCACATGCTCAATACTTTCGT 58.430 39.130 0.00 0.00 0.00 3.85
3509 7059 5.412594 TGGAACTCACATGCTCAATACTTTC 59.587 40.000 0.00 0.00 0.00 2.62
3511 7061 4.910195 TGGAACTCACATGCTCAATACTT 58.090 39.130 0.00 0.00 0.00 2.24
3571 7535 2.192664 TGTATGCTTTTGCCCTTCGA 57.807 45.000 0.00 0.00 46.87 3.71
3580 7554 4.580167 TGCAGAGTTGTCTTGTATGCTTTT 59.420 37.500 0.00 0.00 0.00 2.27
3624 7792 6.110543 TCGCTCTGTTGAATTGAACATATG 57.889 37.500 10.99 0.00 35.32 1.78
3654 7822 6.926313 TGTTTTCCTTTTTCTTTCCGAAAGA 58.074 32.000 17.88 17.88 45.30 2.52
3671 7840 4.377841 CGAAAGCTGATCACTCTGTTTTCC 60.378 45.833 12.98 1.68 42.36 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.