Multiple sequence alignment - TraesCS5A01G445200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G445200 chr5A 100.000 5160 0 0 256 5415 624797559 624792400 0.000000e+00 9529.0
1 TraesCS5A01G445200 chr5A 100.000 62 0 0 1 62 624797814 624797753 1.230000e-21 115.0
2 TraesCS5A01G445200 chr5B 92.483 1583 77 25 668 2223 622386634 622388201 0.000000e+00 2226.0
3 TraesCS5A01G445200 chr5B 87.153 864 78 21 2428 3283 622388436 622389274 0.000000e+00 950.0
4 TraesCS5A01G445200 chr5B 88.535 471 38 7 3496 3956 622389606 622390070 1.700000e-154 556.0
5 TraesCS5A01G445200 chr5B 86.069 524 30 16 4932 5415 622391262 622391782 1.730000e-144 523.0
6 TraesCS5A01G445200 chr5B 91.530 366 23 6 4350 4709 622390734 622391097 1.050000e-136 497.0
7 TraesCS5A01G445200 chr5B 89.688 320 28 3 256 574 622386316 622386631 2.350000e-108 403.0
8 TraesCS5A01G445200 chr5D 95.041 1109 52 3 1116 2223 500857456 500858562 0.000000e+00 1740.0
9 TraesCS5A01G445200 chr5D 88.485 990 76 13 2304 3283 500858560 500859521 0.000000e+00 1162.0
10 TraesCS5A01G445200 chr5D 92.286 713 39 6 400 1099 500856324 500857033 0.000000e+00 998.0
11 TraesCS5A01G445200 chr5D 87.168 678 48 20 4771 5415 500860939 500861610 0.000000e+00 734.0
12 TraesCS5A01G445200 chr5D 86.378 646 35 23 3358 3956 500859531 500860170 0.000000e+00 656.0
13 TraesCS5A01G445200 chr5D 94.493 345 11 5 4348 4685 500860486 500860829 4.800000e-145 525.0
14 TraesCS5A01G445200 chr5D 93.548 124 7 1 3993 4116 93062111 93062233 3.330000e-42 183.0
15 TraesCS5A01G445200 chr5D 86.486 111 9 5 2216 2322 57393819 57393711 3.430000e-22 117.0
16 TraesCS5A01G445200 chr5D 86.667 105 12 2 2204 2307 539963170 539963273 1.230000e-21 115.0
17 TraesCS5A01G445200 chr5D 96.875 64 2 0 271 334 500856259 500856322 2.060000e-19 108.0
18 TraesCS5A01G445200 chr7B 94.488 127 6 1 3993 4119 522721466 522721341 1.540000e-45 195.0
19 TraesCS5A01G445200 chr7B 83.333 84 10 3 298 380 740050288 740050368 2.090000e-09 75.0
20 TraesCS5A01G445200 chr3D 95.161 124 5 1 3993 4116 25133088 25132966 1.540000e-45 195.0
21 TraesCS5A01G445200 chr3D 94.309 123 6 1 3994 4116 426452011 426451890 2.580000e-43 187.0
22 TraesCS5A01G445200 chr3D 93.548 124 7 1 3993 4116 71517831 71517709 3.330000e-42 183.0
23 TraesCS5A01G445200 chr3D 83.133 83 11 1 298 380 477906141 477906220 7.520000e-09 73.1
24 TraesCS5A01G445200 chr3B 95.161 124 4 2 3993 4116 117589417 117589296 1.540000e-45 195.0
25 TraesCS5A01G445200 chr3A 94.355 124 6 1 3993 4116 34532602 34532480 7.160000e-44 189.0
26 TraesCS5A01G445200 chr3A 85.542 83 9 1 298 380 621323736 621323815 3.480000e-12 84.2
27 TraesCS5A01G445200 chr4D 94.309 123 6 1 3993 4115 29833638 29833517 2.580000e-43 187.0
28 TraesCS5A01G445200 chr7D 92.913 127 7 2 3993 4119 494749937 494749813 3.330000e-42 183.0
29 TraesCS5A01G445200 chr7D 95.349 43 2 0 555 597 234796591 234796549 9.730000e-08 69.4
30 TraesCS5A01G445200 chr4B 93.333 90 6 0 2220 2309 650697295 650697384 3.400000e-27 134.0
31 TraesCS5A01G445200 chr1A 94.118 85 5 0 2220 2304 568396161 568396077 4.400000e-26 130.0
32 TraesCS5A01G445200 chr1A 90.323 93 9 0 2218 2310 99970835 99970743 7.370000e-24 122.0
33 TraesCS5A01G445200 chr1A 95.349 43 2 0 555 597 259202218 259202176 9.730000e-08 69.4
34 TraesCS5A01G445200 chr6D 93.023 86 6 0 2220 2305 471069937 471069852 5.690000e-25 126.0
35 TraesCS5A01G445200 chr6D 91.954 87 7 0 2220 2306 63328284 63328198 7.370000e-24 122.0
36 TraesCS5A01G445200 chr6D 91.111 90 3 1 2216 2305 72021725 72021809 3.430000e-22 117.0
37 TraesCS5A01G445200 chr6D 100.000 28 0 0 536 563 187388002 187388029 1.000000e-02 52.8
38 TraesCS5A01G445200 chr2A 91.209 91 5 1 2220 2307 115452893 115452803 2.650000e-23 121.0
39 TraesCS5A01G445200 chr2A 84.810 79 9 2 302 380 179289311 179289236 5.820000e-10 76.8
40 TraesCS5A01G445200 chr2D 84.706 85 8 4 298 380 170619935 170620016 4.500000e-11 80.5
41 TraesCS5A01G445200 chr1D 84.810 79 8 2 307 384 377006921 377006996 5.820000e-10 76.8
42 TraesCS5A01G445200 chr6B 83.951 81 8 2 300 380 495435912 495435987 7.520000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G445200 chr5A 624792400 624797814 5414 True 4822.000000 9529 100.000000 1 5415 2 chr5A.!!$R1 5414
1 TraesCS5A01G445200 chr5B 622386316 622391782 5466 False 859.166667 2226 89.243000 256 5415 6 chr5B.!!$F1 5159
2 TraesCS5A01G445200 chr5D 500856259 500861610 5351 False 846.142857 1740 91.532286 271 5415 7 chr5D.!!$F3 5144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.108709 CAACCAATCCCACGGCAATG 60.109 55.000 0.00 0.0 0.00 2.82 F
30 31 0.174845 ACGGCAATGCGCTAGTTAGA 59.825 50.000 9.73 0.0 41.91 2.10 F
411 412 0.461961 AGCTGACTCTTCATACGCCC 59.538 55.000 0.00 0.0 0.00 6.13 F
643 644 0.521735 GGCACATGAAGAAACGACCC 59.478 55.000 0.00 0.0 0.00 4.46 F
958 973 0.562177 CATTCCCATTCCCATCCCCA 59.438 55.000 0.00 0.0 0.00 4.96 F
1701 2146 0.604243 TGTTGGCGGCAATAGTTCGT 60.604 50.000 28.07 0.0 0.00 3.85 F
2211 2656 1.197036 GCCTCTGTTTTTCTACGGCAC 59.803 52.381 0.00 0.0 36.16 5.01 F
3292 3870 0.035152 TTCCTGGCTTCATGCGTGAT 60.035 50.000 9.96 0.0 44.05 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1123 1565 0.246635 ACTGGAATCACGAACGGAGG 59.753 55.000 0.00 0.0 0.00 4.30 R
1172 1614 0.678684 ACCCGAAAATCCGCCGAAAT 60.679 50.000 0.00 0.0 0.00 2.17 R
1668 2113 1.003580 GCCAACATCCTGAACTGAGGA 59.996 52.381 0.00 0.0 46.47 3.71 R
2424 2869 0.895530 TAGAGCCACGGAGGAAACTG 59.104 55.000 0.00 0.0 44.43 3.16 R
2672 3242 4.960938 TGACTCAGACTTTGCAGTAACAT 58.039 39.130 0.00 0.0 31.22 2.71 R
3144 3719 0.561184 TAGCCTGCTAGAGCCCCTTA 59.439 55.000 0.00 0.0 41.18 2.69 R
4042 5018 0.108138 GTAATGCAGAGAGGCCACGT 60.108 55.000 5.01 0.0 0.00 4.49 R
4713 5914 0.106419 ACCTGTTTTCGCCCCTCAAA 60.106 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.770589 CAACCAATCCCACGGCAA 58.229 55.556 0.00 0.00 0.00 4.52
18 19 2.275880 CAACCAATCCCACGGCAAT 58.724 52.632 0.00 0.00 0.00 3.56
19 20 0.108709 CAACCAATCCCACGGCAATG 60.109 55.000 0.00 0.00 0.00 2.82
20 21 1.887344 AACCAATCCCACGGCAATGC 61.887 55.000 0.00 0.00 0.00 3.56
21 22 2.102749 CAATCCCACGGCAATGCG 59.897 61.111 0.00 0.00 0.00 4.73
22 23 3.825611 AATCCCACGGCAATGCGC 61.826 61.111 0.00 0.00 41.28 6.09
23 24 4.802051 ATCCCACGGCAATGCGCT 62.802 61.111 9.73 0.00 41.91 5.92
24 25 2.884997 AATCCCACGGCAATGCGCTA 62.885 55.000 9.73 0.00 41.91 4.26
25 26 3.576356 CCCACGGCAATGCGCTAG 61.576 66.667 9.73 0.00 41.91 3.42
26 27 2.819595 CCACGGCAATGCGCTAGT 60.820 61.111 9.73 0.00 41.91 2.57
27 28 2.398554 CCACGGCAATGCGCTAGTT 61.399 57.895 9.73 0.00 41.91 2.24
28 29 1.087202 CCACGGCAATGCGCTAGTTA 61.087 55.000 9.73 0.00 41.91 2.24
29 30 0.301687 CACGGCAATGCGCTAGTTAG 59.698 55.000 9.73 0.00 41.91 2.34
30 31 0.174845 ACGGCAATGCGCTAGTTAGA 59.825 50.000 9.73 0.00 41.91 2.10
31 32 1.202533 ACGGCAATGCGCTAGTTAGAT 60.203 47.619 9.73 0.00 41.91 1.98
32 33 1.867233 CGGCAATGCGCTAGTTAGATT 59.133 47.619 9.73 0.00 41.91 2.40
33 34 3.057019 CGGCAATGCGCTAGTTAGATTA 58.943 45.455 9.73 0.00 41.91 1.75
34 35 3.493129 CGGCAATGCGCTAGTTAGATTAA 59.507 43.478 9.73 0.00 41.91 1.40
35 36 4.152402 CGGCAATGCGCTAGTTAGATTAAT 59.848 41.667 9.73 0.00 41.91 1.40
36 37 5.347635 CGGCAATGCGCTAGTTAGATTAATA 59.652 40.000 9.73 0.00 41.91 0.98
37 38 6.454318 CGGCAATGCGCTAGTTAGATTAATAG 60.454 42.308 9.73 0.00 41.91 1.73
38 39 6.369065 GGCAATGCGCTAGTTAGATTAATAGT 59.631 38.462 9.73 0.00 41.91 2.12
39 40 7.544566 GGCAATGCGCTAGTTAGATTAATAGTA 59.455 37.037 9.73 0.00 41.91 1.82
40 41 8.922676 GCAATGCGCTAGTTAGATTAATAGTAA 58.077 33.333 9.73 0.00 37.77 2.24
43 44 8.498192 TGCGCTAGTTAGATTAATAGTAAACG 57.502 34.615 9.73 0.00 0.00 3.60
44 45 7.592533 TGCGCTAGTTAGATTAATAGTAAACGG 59.407 37.037 9.73 0.00 0.00 4.44
45 46 7.592903 GCGCTAGTTAGATTAATAGTAAACGGT 59.407 37.037 0.00 0.00 0.00 4.83
46 47 9.111702 CGCTAGTTAGATTAATAGTAAACGGTC 57.888 37.037 0.00 0.00 0.00 4.79
345 346 7.869016 TCTGTCTTAGATTTTTGTAGACACG 57.131 36.000 0.00 0.00 40.01 4.49
346 347 7.654568 TCTGTCTTAGATTTTTGTAGACACGA 58.345 34.615 0.00 0.00 40.01 4.35
349 350 8.708742 TGTCTTAGATTTTTGTAGACACGAATG 58.291 33.333 0.00 0.00 40.01 2.67
350 351 8.709646 GTCTTAGATTTTTGTAGACACGAATGT 58.290 33.333 0.00 0.00 43.71 2.71
351 352 9.917129 TCTTAGATTTTTGTAGACACGAATGTA 57.083 29.630 0.00 0.00 39.95 2.29
361 362 8.496707 TGTAGACACGAATGTAGTATCTAACA 57.503 34.615 0.00 0.00 39.95 2.41
362 363 8.393366 TGTAGACACGAATGTAGTATCTAACAC 58.607 37.037 0.00 0.00 39.95 3.32
393 394 8.800231 CATGTCTAGATAGAGATGTTTCACAG 57.200 38.462 15.43 0.00 44.50 3.66
398 399 5.659463 AGATAGAGATGTTTCACAGCTGAC 58.341 41.667 23.35 8.67 45.93 3.51
411 412 0.461961 AGCTGACTCTTCATACGCCC 59.538 55.000 0.00 0.00 0.00 6.13
497 498 3.064207 CCAGAGAAAACCGAATTCACGA 58.936 45.455 6.22 0.00 35.09 4.35
502 503 5.120830 AGAGAAAACCGAATTCACGATGAAG 59.879 40.000 6.22 0.00 40.05 3.02
524 525 7.827236 TGAAGTATATCCGTTCAAAAGTTGGAT 59.173 33.333 0.00 0.00 42.00 3.41
563 564 9.226606 TCAAATGAAATAGACCGTTTAGTGATT 57.773 29.630 0.00 0.00 0.00 2.57
610 611 5.638596 ACGGGAGTATTTGATTTCAAACC 57.361 39.130 7.83 5.16 44.60 3.27
614 615 7.449086 ACGGGAGTATTTGATTTCAAACCTTTA 59.551 33.333 7.83 0.00 44.60 1.85
629 630 4.481368 ACCTTTATGTATTCTCGGCACA 57.519 40.909 0.00 0.00 0.00 4.57
630 631 5.036117 ACCTTTATGTATTCTCGGCACAT 57.964 39.130 0.00 0.00 36.82 3.21
643 644 0.521735 GGCACATGAAGAAACGACCC 59.478 55.000 0.00 0.00 0.00 4.46
689 690 4.415150 CAGCAGGCCACCATCGGT 62.415 66.667 5.01 0.00 35.62 4.69
716 717 1.066918 ACCGTCCGATGGCGATAAC 59.933 57.895 6.55 0.00 40.82 1.89
719 720 1.066918 GTCCGATGGCGATAACGGT 59.933 57.895 8.37 0.00 44.72 4.83
958 973 0.562177 CATTCCCATTCCCATCCCCA 59.438 55.000 0.00 0.00 0.00 4.96
959 974 1.150560 CATTCCCATTCCCATCCCCAT 59.849 52.381 0.00 0.00 0.00 4.00
960 975 0.859760 TTCCCATTCCCATCCCCATC 59.140 55.000 0.00 0.00 0.00 3.51
962 977 1.466526 CCATTCCCATCCCCATCCC 59.533 63.158 0.00 0.00 0.00 3.85
963 978 1.466526 CATTCCCATCCCCATCCCC 59.533 63.158 0.00 0.00 0.00 4.81
1168 1610 2.564062 TCCGGTCTAGTTTGTTTCCGAT 59.436 45.455 0.00 0.00 40.29 4.18
1172 1614 6.096705 TCCGGTCTAGTTTGTTTCCGATATTA 59.903 38.462 0.00 0.00 40.29 0.98
1297 1740 6.715347 AAGAAAAATCTGGTGTTAGCAAGT 57.285 33.333 0.00 0.00 0.00 3.16
1301 1744 2.148916 TCTGGTGTTAGCAAGTCGTG 57.851 50.000 0.00 0.00 0.00 4.35
1340 1783 1.336125 GCATGCTGTAAATCCTGGAGC 59.664 52.381 11.37 0.00 0.00 4.70
1356 1799 6.235664 TCCTGGAGCGTTCTTTAATTTTACT 58.764 36.000 0.00 0.00 0.00 2.24
1382 1825 8.161425 TGCTTTGGTTTCTTAATCTACTTACCT 58.839 33.333 0.00 0.00 0.00 3.08
1397 1840 2.500392 TACCTTTGAACATTCGGGGG 57.500 50.000 0.00 0.00 0.00 5.40
1495 1938 3.450096 ACTCGGATTAACACTTACTCCCC 59.550 47.826 0.00 0.00 32.86 4.81
1521 1965 1.735386 CACATGGAGCTGAGGACTTG 58.265 55.000 0.00 0.00 0.00 3.16
1578 2022 7.553044 GCTTATCTTTGGGTACAATGTAAGTCT 59.447 37.037 0.00 0.00 36.29 3.24
1590 2034 6.745116 ACAATGTAAGTCTTTTTGCTAACCC 58.255 36.000 0.00 0.00 0.00 4.11
1628 2073 0.919710 GGGAGGTTATGTGGAGGCTT 59.080 55.000 0.00 0.00 0.00 4.35
1668 2113 5.818857 ACTTGCATTTCTTGTGCTGAAATTT 59.181 32.000 0.00 0.00 40.76 1.82
1685 2130 6.070656 TGAAATTTCCTCAGTTCAGGATGTT 58.929 36.000 15.48 0.00 42.49 2.71
1701 2146 0.604243 TGTTGGCGGCAATAGTTCGT 60.604 50.000 28.07 0.00 0.00 3.85
1779 2224 9.995003 GCTATCCTAGTCTTGTTACTACTACTA 57.005 37.037 0.00 0.00 0.00 1.82
2040 2485 2.357075 CAAGATGTGCAGAGTGCTGAT 58.643 47.619 0.00 0.00 45.31 2.90
2136 2581 1.584175 TTTGCCGCTTCGAGTACAAA 58.416 45.000 0.00 0.00 0.00 2.83
2169 2614 1.305219 GCTTTGTGCCTGACCGCATA 61.305 55.000 0.00 0.00 41.70 3.14
2191 2636 7.636359 GCATAGCTGTGTAAGAATTTAAACGAG 59.364 37.037 12.41 0.00 30.82 4.18
2206 2651 6.535274 TTAAACGAGCCTCTGTTTTTCTAC 57.465 37.500 15.95 0.00 39.00 2.59
2211 2656 1.197036 GCCTCTGTTTTTCTACGGCAC 59.803 52.381 0.00 0.00 36.16 5.01
2223 2668 5.496133 TTCTACGGCACATCTTACTACTC 57.504 43.478 0.00 0.00 0.00 2.59
2225 2670 1.755380 ACGGCACATCTTACTACTCCC 59.245 52.381 0.00 0.00 0.00 4.30
2227 2672 2.034812 CGGCACATCTTACTACTCCCTC 59.965 54.545 0.00 0.00 0.00 4.30
2228 2673 3.301274 GGCACATCTTACTACTCCCTCT 58.699 50.000 0.00 0.00 0.00 3.69
2229 2674 3.068873 GGCACATCTTACTACTCCCTCTG 59.931 52.174 0.00 0.00 0.00 3.35
2230 2675 3.702045 GCACATCTTACTACTCCCTCTGT 59.298 47.826 0.00 0.00 0.00 3.41
2231 2676 4.888239 GCACATCTTACTACTCCCTCTGTA 59.112 45.833 0.00 0.00 0.00 2.74
2232 2677 5.360144 GCACATCTTACTACTCCCTCTGTAA 59.640 44.000 0.00 0.00 0.00 2.41
2233 2678 6.127423 GCACATCTTACTACTCCCTCTGTAAA 60.127 42.308 0.00 0.00 0.00 2.01
2234 2679 7.259161 CACATCTTACTACTCCCTCTGTAAAC 58.741 42.308 0.00 0.00 0.00 2.01
2235 2680 6.952358 ACATCTTACTACTCCCTCTGTAAACA 59.048 38.462 0.00 0.00 0.00 2.83
2236 2681 7.453752 ACATCTTACTACTCCCTCTGTAAACAA 59.546 37.037 0.00 0.00 0.00 2.83
2237 2682 7.844493 TCTTACTACTCCCTCTGTAAACAAA 57.156 36.000 0.00 0.00 0.00 2.83
2238 2683 8.431910 TCTTACTACTCCCTCTGTAAACAAAT 57.568 34.615 0.00 0.00 0.00 2.32
2239 2684 9.537852 TCTTACTACTCCCTCTGTAAACAAATA 57.462 33.333 0.00 0.00 0.00 1.40
2246 2691 7.980099 ACTCCCTCTGTAAACAAATATAAGACG 59.020 37.037 0.00 0.00 0.00 4.18
2247 2692 7.844009 TCCCTCTGTAAACAAATATAAGACGT 58.156 34.615 0.00 0.00 0.00 4.34
2248 2693 8.316214 TCCCTCTGTAAACAAATATAAGACGTT 58.684 33.333 0.00 0.00 0.00 3.99
2249 2694 8.943002 CCCTCTGTAAACAAATATAAGACGTTT 58.057 33.333 0.00 0.00 34.40 3.60
2258 2703 9.498176 AACAAATATAAGACGTTTTAGGTCACT 57.502 29.630 4.75 0.00 35.60 3.41
2261 2706 8.847444 AATATAAGACGTTTTAGGTCACTACG 57.153 34.615 4.75 0.00 35.60 3.51
2262 2707 4.574599 AAGACGTTTTAGGTCACTACGT 57.425 40.909 0.00 0.00 35.60 3.57
2263 2708 4.574599 AGACGTTTTAGGTCACTACGTT 57.425 40.909 0.00 0.00 35.60 3.99
2264 2709 5.689383 AGACGTTTTAGGTCACTACGTTA 57.311 39.130 0.00 0.00 35.60 3.18
2265 2710 5.693814 AGACGTTTTAGGTCACTACGTTAG 58.306 41.667 0.00 0.00 35.60 2.34
2266 2711 5.239525 AGACGTTTTAGGTCACTACGTTAGT 59.760 40.000 0.00 0.00 40.28 2.24
2285 2730 9.871238 ACGTTAGTGATCTAAAACATCTTACAT 57.129 29.630 0.00 0.00 37.81 2.29
2298 2743 9.965824 AAAACATCTTACATTTGTTTACAGAGG 57.034 29.630 1.18 0.00 41.39 3.69
2299 2744 7.687941 ACATCTTACATTTGTTTACAGAGGG 57.312 36.000 0.00 0.00 0.00 4.30
2300 2745 7.458397 ACATCTTACATTTGTTTACAGAGGGA 58.542 34.615 0.00 0.00 0.00 4.20
2301 2746 7.607991 ACATCTTACATTTGTTTACAGAGGGAG 59.392 37.037 0.00 0.00 0.00 4.30
2302 2747 7.074653 TCTTACATTTGTTTACAGAGGGAGT 57.925 36.000 0.00 0.00 0.00 3.85
2424 2869 9.865484 GTGAGTCATTGTTTCTTACTTTCTTAC 57.135 33.333 0.00 0.00 0.00 2.34
2425 2870 9.607988 TGAGTCATTGTTTCTTACTTTCTTACA 57.392 29.630 0.00 0.00 0.00 2.41
2435 2992 6.453092 TCTTACTTTCTTACAGTTTCCTCCG 58.547 40.000 0.00 0.00 0.00 4.63
2438 2995 3.396260 TTCTTACAGTTTCCTCCGTGG 57.604 47.619 0.00 0.00 37.10 4.94
2501 3061 2.102925 GTGCCCCCATGGTTGATAATTG 59.897 50.000 11.73 0.00 36.04 2.32
2573 3141 9.002061 ACTCTCTACTGTAACCCTATTACTACT 57.998 37.037 0.00 0.00 0.00 2.57
2574 3142 9.492973 CTCTCTACTGTAACCCTATTACTACTC 57.507 40.741 0.00 0.00 0.00 2.59
2575 3143 9.223291 TCTCTACTGTAACCCTATTACTACTCT 57.777 37.037 0.00 0.00 0.00 3.24
2576 3144 9.492973 CTCTACTGTAACCCTATTACTACTCTC 57.507 40.741 0.00 0.00 0.00 3.20
2577 3145 9.223291 TCTACTGTAACCCTATTACTACTCTCT 57.777 37.037 0.00 0.00 0.00 3.10
2580 3148 9.002061 ACTGTAACCCTATTACTACTCTCTACT 57.998 37.037 0.00 0.00 0.00 2.57
2581 3149 9.275398 CTGTAACCCTATTACTACTCTCTACTG 57.725 40.741 0.00 0.00 0.00 2.74
2582 3150 8.776119 TGTAACCCTATTACTACTCTCTACTGT 58.224 37.037 0.00 0.00 0.00 3.55
2585 3153 9.625747 AACCCTATTACTACTCTCTACTGTAAC 57.374 37.037 0.00 0.00 0.00 2.50
2586 3154 8.217111 ACCCTATTACTACTCTCTACTGTAACC 58.783 40.741 0.00 0.00 0.00 2.85
2587 3155 7.665145 CCCTATTACTACTCTCTACTGTAACCC 59.335 44.444 0.00 0.00 0.00 4.11
2588 3156 8.439172 CCTATTACTACTCTCTACTGTAACCCT 58.561 40.741 0.00 0.00 0.00 4.34
2616 3186 6.314917 ACTCCTTTTGGGACATAATTCACTT 58.685 36.000 0.00 0.00 39.58 3.16
2668 3238 5.075858 TGAACTAGGTACATGGTTTACCG 57.924 43.478 10.67 0.00 43.45 4.02
2672 3242 5.022787 ACTAGGTACATGGTTTACCGGTAA 58.977 41.667 23.17 23.17 43.45 2.85
2732 3305 2.684881 ACCTATCTTGCAGATTTTGGCG 59.315 45.455 4.35 0.00 36.20 5.69
2823 3398 9.574458 TCGTATCTCTCTTTTATGAAAGACAAG 57.426 33.333 8.50 9.19 44.73 3.16
2872 3447 8.548877 ACTAATTAACTGCCTTTCCATCTCTTA 58.451 33.333 0.00 0.00 0.00 2.10
2882 3457 7.336931 TGCCTTTCCATCTCTTATTCTAACAAC 59.663 37.037 0.00 0.00 0.00 3.32
2997 3572 9.031360 TGATGCATTCGTTTAGTTTCTCTATAC 57.969 33.333 0.00 0.00 0.00 1.47
3022 3597 4.525487 AGAATGGTTGTAACGTGGAGACTA 59.475 41.667 0.00 0.00 0.00 2.59
3059 3634 7.536622 GTGTCATTCAATGAAGTCAAGATGTTC 59.463 37.037 0.29 0.00 41.69 3.18
3125 3700 5.049828 GCAAAGCAACTAAATTTCACAGGT 58.950 37.500 0.00 0.00 0.00 4.00
3144 3719 2.292292 GGTGCAAACTACACAACCGATT 59.708 45.455 0.00 0.00 39.87 3.34
3148 3723 4.214545 TGCAAACTACACAACCGATTAAGG 59.785 41.667 0.00 0.00 37.30 2.69
3149 3724 4.379082 GCAAACTACACAACCGATTAAGGG 60.379 45.833 0.00 0.00 35.02 3.95
3151 3726 2.285977 CTACACAACCGATTAAGGGGC 58.714 52.381 0.92 0.00 35.02 5.80
3152 3727 0.696501 ACACAACCGATTAAGGGGCT 59.303 50.000 0.92 0.00 35.02 5.19
3153 3728 1.339727 ACACAACCGATTAAGGGGCTC 60.340 52.381 0.92 0.00 35.02 4.70
3197 3774 2.627699 ACCACTGGTTACTGCAATTTGG 59.372 45.455 0.00 0.00 27.29 3.28
3254 3831 8.741603 TTAGTAATAGTAGTTCATTTTGGGCC 57.258 34.615 0.00 0.00 0.00 5.80
3270 3848 0.391130 GGCCGAGTGTTGCATAGTCA 60.391 55.000 0.00 0.00 0.00 3.41
3283 3861 3.696051 TGCATAGTCAAATTCCTGGCTTC 59.304 43.478 0.00 0.00 32.31 3.86
3284 3862 3.696051 GCATAGTCAAATTCCTGGCTTCA 59.304 43.478 0.00 0.00 32.31 3.02
3287 3865 2.494870 AGTCAAATTCCTGGCTTCATGC 59.505 45.455 0.00 0.00 41.94 4.06
3288 3866 1.473677 TCAAATTCCTGGCTTCATGCG 59.526 47.619 0.00 0.00 44.05 4.73
3289 3867 1.203052 CAAATTCCTGGCTTCATGCGT 59.797 47.619 0.00 0.00 44.05 5.24
3292 3870 0.035152 TTCCTGGCTTCATGCGTGAT 60.035 50.000 9.96 0.00 44.05 3.06
3293 3871 0.035152 TCCTGGCTTCATGCGTGATT 60.035 50.000 9.96 0.00 44.05 2.57
3294 3872 0.099968 CCTGGCTTCATGCGTGATTG 59.900 55.000 9.96 7.23 44.05 2.67
3295 3873 0.806868 CTGGCTTCATGCGTGATTGT 59.193 50.000 9.96 0.00 44.05 2.71
3296 3874 1.200716 CTGGCTTCATGCGTGATTGTT 59.799 47.619 9.96 0.00 44.05 2.83
3297 3875 1.612950 TGGCTTCATGCGTGATTGTTT 59.387 42.857 9.96 0.00 44.05 2.83
3298 3876 1.987770 GGCTTCATGCGTGATTGTTTG 59.012 47.619 9.96 0.00 44.05 2.93
3299 3877 2.351641 GGCTTCATGCGTGATTGTTTGA 60.352 45.455 9.96 0.00 44.05 2.69
3300 3878 2.912967 GCTTCATGCGTGATTGTTTGAG 59.087 45.455 9.96 3.29 33.56 3.02
3301 3879 2.617250 TCATGCGTGATTGTTTGAGC 57.383 45.000 3.97 0.00 0.00 4.26
3302 3880 2.153645 TCATGCGTGATTGTTTGAGCT 58.846 42.857 3.97 0.00 0.00 4.09
3303 3881 2.160219 TCATGCGTGATTGTTTGAGCTC 59.840 45.455 6.82 6.82 0.00 4.09
3304 3882 1.592064 TGCGTGATTGTTTGAGCTCA 58.408 45.000 13.74 13.74 0.00 4.26
3305 3883 2.153645 TGCGTGATTGTTTGAGCTCAT 58.846 42.857 19.04 0.85 0.00 2.90
3306 3884 2.095617 TGCGTGATTGTTTGAGCTCATG 60.096 45.455 19.04 0.00 0.00 3.07
3307 3885 2.512885 CGTGATTGTTTGAGCTCATGC 58.487 47.619 19.04 13.72 40.05 4.06
3308 3886 2.095617 CGTGATTGTTTGAGCTCATGCA 60.096 45.455 19.04 16.22 42.74 3.96
3309 3887 3.427098 CGTGATTGTTTGAGCTCATGCAT 60.427 43.478 19.04 7.55 42.74 3.96
3310 3888 3.857665 GTGATTGTTTGAGCTCATGCATG 59.142 43.478 21.07 21.07 42.74 4.06
3311 3889 3.508402 TGATTGTTTGAGCTCATGCATGT 59.492 39.130 25.43 7.32 42.74 3.21
3312 3890 4.021807 TGATTGTTTGAGCTCATGCATGTT 60.022 37.500 25.43 12.92 42.74 2.71
3313 3891 4.325028 TTGTTTGAGCTCATGCATGTTT 57.675 36.364 25.43 12.57 42.74 2.83
3314 3892 5.450592 TTGTTTGAGCTCATGCATGTTTA 57.549 34.783 25.43 6.49 42.74 2.01
3315 3893 5.648178 TGTTTGAGCTCATGCATGTTTAT 57.352 34.783 25.43 10.85 42.74 1.40
3316 3894 6.756299 TGTTTGAGCTCATGCATGTTTATA 57.244 33.333 25.43 5.72 42.74 0.98
3317 3895 7.155655 TGTTTGAGCTCATGCATGTTTATAA 57.844 32.000 25.43 13.80 42.74 0.98
3318 3896 7.600960 TGTTTGAGCTCATGCATGTTTATAAA 58.399 30.769 25.43 18.07 42.74 1.40
3319 3897 8.087136 TGTTTGAGCTCATGCATGTTTATAAAA 58.913 29.630 25.43 16.30 42.74 1.52
3320 3898 8.589629 GTTTGAGCTCATGCATGTTTATAAAAG 58.410 33.333 25.43 13.98 42.74 2.27
3321 3899 7.395190 TGAGCTCATGCATGTTTATAAAAGT 57.605 32.000 25.43 4.92 42.74 2.66
3322 3900 7.252708 TGAGCTCATGCATGTTTATAAAAGTG 58.747 34.615 25.43 3.41 42.74 3.16
3323 3901 7.094248 TGAGCTCATGCATGTTTATAAAAGTGT 60.094 33.333 25.43 5.70 42.74 3.55
3324 3902 7.031372 AGCTCATGCATGTTTATAAAAGTGTG 58.969 34.615 25.43 0.00 42.74 3.82
3325 3903 6.254157 GCTCATGCATGTTTATAAAAGTGTGG 59.746 38.462 25.43 0.00 39.41 4.17
3326 3904 7.459795 TCATGCATGTTTATAAAAGTGTGGA 57.540 32.000 25.43 0.00 0.00 4.02
3327 3905 7.537715 TCATGCATGTTTATAAAAGTGTGGAG 58.462 34.615 25.43 0.00 0.00 3.86
3328 3906 7.392953 TCATGCATGTTTATAAAAGTGTGGAGA 59.607 33.333 25.43 0.00 0.00 3.71
3329 3907 6.908825 TGCATGTTTATAAAAGTGTGGAGAC 58.091 36.000 0.00 0.00 0.00 3.36
3330 3908 6.488344 TGCATGTTTATAAAAGTGTGGAGACA 59.512 34.615 0.00 0.00 38.70 3.41
3331 3909 7.013750 TGCATGTTTATAAAAGTGTGGAGACAA 59.986 33.333 0.00 0.00 46.06 3.18
3332 3910 7.538678 GCATGTTTATAAAAGTGTGGAGACAAG 59.461 37.037 0.00 0.00 46.06 3.16
3333 3911 7.504924 TGTTTATAAAAGTGTGGAGACAAGG 57.495 36.000 0.00 0.00 46.06 3.61
3334 3912 7.057894 TGTTTATAAAAGTGTGGAGACAAGGT 58.942 34.615 0.00 0.00 46.06 3.50
3335 3913 7.012894 TGTTTATAAAAGTGTGGAGACAAGGTG 59.987 37.037 0.00 0.00 46.06 4.00
3336 3914 3.644966 AAAAGTGTGGAGACAAGGTGA 57.355 42.857 0.00 0.00 46.06 4.02
3337 3915 3.864789 AAAGTGTGGAGACAAGGTGAT 57.135 42.857 0.00 0.00 46.06 3.06
3338 3916 3.864789 AAGTGTGGAGACAAGGTGATT 57.135 42.857 0.00 0.00 46.06 2.57
3339 3917 3.864789 AGTGTGGAGACAAGGTGATTT 57.135 42.857 0.00 0.00 46.06 2.17
3340 3918 3.480470 AGTGTGGAGACAAGGTGATTTG 58.520 45.455 0.00 0.00 46.06 2.32
3341 3919 2.554032 GTGTGGAGACAAGGTGATTTGG 59.446 50.000 0.00 0.00 46.06 3.28
3342 3920 2.162681 GTGGAGACAAGGTGATTTGGG 58.837 52.381 0.00 0.00 46.06 4.12
3343 3921 1.177401 GGAGACAAGGTGATTTGGGC 58.823 55.000 0.00 0.00 32.32 5.36
3344 3922 1.547675 GGAGACAAGGTGATTTGGGCA 60.548 52.381 0.00 0.00 32.32 5.36
3345 3923 2.238521 GAGACAAGGTGATTTGGGCAA 58.761 47.619 0.00 0.00 32.32 4.52
3346 3924 2.627699 GAGACAAGGTGATTTGGGCAAA 59.372 45.455 0.00 0.00 32.32 3.68
3347 3925 3.037549 AGACAAGGTGATTTGGGCAAAA 58.962 40.909 0.00 0.00 33.56 2.44
3348 3926 3.454082 AGACAAGGTGATTTGGGCAAAAA 59.546 39.130 0.00 0.00 33.56 1.94
3349 3927 3.807553 ACAAGGTGATTTGGGCAAAAAG 58.192 40.909 0.00 0.00 33.56 2.27
3350 3928 3.199727 ACAAGGTGATTTGGGCAAAAAGT 59.800 39.130 0.00 0.00 33.56 2.66
3351 3929 4.407296 ACAAGGTGATTTGGGCAAAAAGTA 59.593 37.500 0.00 0.00 33.56 2.24
3352 3930 4.600692 AGGTGATTTGGGCAAAAAGTAC 57.399 40.909 0.00 0.00 33.56 2.73
3353 3931 4.223144 AGGTGATTTGGGCAAAAAGTACT 58.777 39.130 0.00 0.00 33.56 2.73
3354 3932 4.653801 AGGTGATTTGGGCAAAAAGTACTT 59.346 37.500 1.12 1.12 33.56 2.24
3355 3933 4.749598 GGTGATTTGGGCAAAAAGTACTTG 59.250 41.667 9.34 0.00 33.56 3.16
3356 3934 4.749598 GTGATTTGGGCAAAAAGTACTTGG 59.250 41.667 9.34 3.43 33.56 3.61
3391 3971 5.623956 TTCCGTTATGTGATATCCACCTT 57.376 39.130 0.00 0.00 45.09 3.50
3392 3972 5.623956 TCCGTTATGTGATATCCACCTTT 57.376 39.130 0.00 0.00 45.09 3.11
3407 3987 1.604278 ACCTTTGAGAGTTGCGCTTTC 59.396 47.619 9.73 3.42 0.00 2.62
3408 3988 1.603802 CCTTTGAGAGTTGCGCTTTCA 59.396 47.619 9.73 2.30 36.66 2.69
3426 4014 6.099341 GCTTTCAAGTTCTTGACCTTTTCAA 58.901 36.000 13.79 4.62 42.26 2.69
3435 4023 9.136323 AGTTCTTGACCTTTTCAAAGATTGTAT 57.864 29.630 0.56 0.00 43.90 2.29
3436 4024 9.185192 GTTCTTGACCTTTTCAAAGATTGTATG 57.815 33.333 0.56 0.00 43.90 2.39
3442 4030 8.250143 ACCTTTTCAAAGATTGTATGGTCTTT 57.750 30.769 0.56 0.00 43.44 2.52
3599 4403 5.028428 CTCTGTAGCACTTTCAGCTTTTC 57.972 43.478 0.00 0.00 43.25 2.29
3616 4420 4.335037 GCTTTTCTGACCATTTTGGCAAAA 59.665 37.500 25.94 25.94 42.67 2.44
3617 4421 5.730289 GCTTTTCTGACCATTTTGGCAAAAC 60.730 40.000 26.23 14.58 42.67 2.43
3618 4422 4.751767 TTCTGACCATTTTGGCAAAACT 57.248 36.364 26.23 12.51 42.67 2.66
3619 4423 5.860941 TTCTGACCATTTTGGCAAAACTA 57.139 34.783 26.23 6.41 42.67 2.24
3620 4424 5.452078 TCTGACCATTTTGGCAAAACTAG 57.548 39.130 26.23 19.05 42.67 2.57
3621 4425 4.892934 TCTGACCATTTTGGCAAAACTAGT 59.107 37.500 26.23 21.76 42.67 2.57
3622 4426 6.065374 TCTGACCATTTTGGCAAAACTAGTA 58.935 36.000 26.23 12.65 42.67 1.82
3623 4427 6.719370 TCTGACCATTTTGGCAAAACTAGTAT 59.281 34.615 26.23 7.92 42.67 2.12
3624 4428 7.885922 TCTGACCATTTTGGCAAAACTAGTATA 59.114 33.333 26.23 14.41 42.67 1.47
3626 4430 8.682710 TGACCATTTTGGCAAAACTAGTATATC 58.317 33.333 26.23 15.03 42.67 1.63
3628 4432 9.255029 ACCATTTTGGCAAAACTAGTATATCTT 57.745 29.630 26.23 4.50 42.67 2.40
3743 4551 9.034544 GCAAAGAAACTTGAGAATTTTACATGT 57.965 29.630 2.69 2.69 0.00 3.21
3847 4661 9.733556 TGAGAAGGTAAGTAATTTGATGCTTTA 57.266 29.630 0.00 0.00 0.00 1.85
3868 4682 8.229137 GCTTTAATTGATTAAATTGTTGCTGCA 58.771 29.630 0.00 0.00 40.32 4.41
3872 4686 7.908827 ATTGATTAAATTGTTGCTGCATTGA 57.091 28.000 1.84 0.00 0.00 2.57
3901 4715 9.906660 CTTAATTTGTATCACTAGCAAAACCAA 57.093 29.630 0.00 0.00 36.00 3.67
3904 4718 4.633175 TGTATCACTAGCAAAACCAACGA 58.367 39.130 0.00 0.00 0.00 3.85
3906 4720 4.685169 ATCACTAGCAAAACCAACGATG 57.315 40.909 0.00 0.00 0.00 3.84
3909 4723 2.819608 ACTAGCAAAACCAACGATGCAT 59.180 40.909 0.00 0.00 41.18 3.96
3962 4889 9.890352 GCATAGATGATCTTGTATTTTCTTTCC 57.110 33.333 0.00 0.00 0.00 3.13
3990 4917 7.967890 TGATATAGCTGTCATGTATTGTTGG 57.032 36.000 0.00 0.00 0.00 3.77
3991 4918 7.734942 TGATATAGCTGTCATGTATTGTTGGA 58.265 34.615 0.00 0.00 0.00 3.53
4007 4976 3.426568 GAGGCGCAGTGGTGAAGC 61.427 66.667 10.83 0.00 0.00 3.86
4015 4984 2.034221 GTGGTGAAGCACTCCCCC 59.966 66.667 5.41 0.00 34.40 5.40
4016 4985 2.449518 TGGTGAAGCACTCCCCCA 60.450 61.111 0.00 0.00 34.40 4.96
4017 4986 2.034221 GGTGAAGCACTCCCCCAC 59.966 66.667 0.00 0.00 34.40 4.61
4019 4988 1.456287 GTGAAGCACTCCCCCACTT 59.544 57.895 0.00 0.00 0.00 3.16
4020 4989 0.890996 GTGAAGCACTCCCCCACTTG 60.891 60.000 0.00 0.00 0.00 3.16
4021 4990 1.352622 TGAAGCACTCCCCCACTTGT 61.353 55.000 0.00 0.00 0.00 3.16
4042 5018 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
4043 5019 0.037232 CAAGAGGTCCTGGGTTCGAC 60.037 60.000 0.00 0.00 0.00 4.20
4044 5020 1.533469 AAGAGGTCCTGGGTTCGACG 61.533 60.000 0.00 0.00 0.00 5.12
4045 5021 2.203596 AGGTCCTGGGTTCGACGT 60.204 61.111 0.00 0.00 0.00 4.34
4046 5022 2.048503 GGTCCTGGGTTCGACGTG 60.049 66.667 0.00 0.00 0.00 4.49
4060 5036 0.175760 GACGTGGCCTCTCTGCATTA 59.824 55.000 3.32 0.00 0.00 1.90
4063 5039 1.473965 CGTGGCCTCTCTGCATTACAT 60.474 52.381 3.32 0.00 0.00 2.29
4086 5062 1.077429 CAGGGGTAAGGCTTGCCTC 60.077 63.158 29.53 27.43 35.94 4.70
4098 5074 3.067833 GGCTTGCCTCGTATAATCCTTC 58.932 50.000 4.11 0.00 0.00 3.46
4111 5087 3.339093 CCTTCCCCAGACCCCACC 61.339 72.222 0.00 0.00 0.00 4.61
4123 5099 2.928396 CCCACCTGGTCCGTCCTT 60.928 66.667 0.00 0.00 37.07 3.36
4126 5102 0.179001 CCACCTGGTCCGTCCTTTTT 60.179 55.000 0.00 0.00 37.07 1.94
4149 5125 9.585099 TTTTTAGATAGCTGCCATGTTTTATTG 57.415 29.630 0.00 0.00 0.00 1.90
4150 5126 7.880160 TTAGATAGCTGCCATGTTTTATTGT 57.120 32.000 0.00 0.00 0.00 2.71
4152 5128 7.502120 AGATAGCTGCCATGTTTTATTGTAG 57.498 36.000 0.00 0.00 0.00 2.74
4153 5129 4.989279 AGCTGCCATGTTTTATTGTAGG 57.011 40.909 0.00 0.00 0.00 3.18
4155 5131 5.505780 AGCTGCCATGTTTTATTGTAGGTA 58.494 37.500 0.00 0.00 0.00 3.08
4156 5132 5.357032 AGCTGCCATGTTTTATTGTAGGTAC 59.643 40.000 0.00 0.00 0.00 3.34
4157 5133 5.124776 GCTGCCATGTTTTATTGTAGGTACA 59.875 40.000 0.00 0.00 0.00 2.90
4185 5161 1.485124 CTTAAAACCAGGGGCCCATC 58.515 55.000 27.72 7.11 0.00 3.51
4203 5179 3.297904 GGCCATTGGGACGCAAAT 58.702 55.556 9.19 0.00 35.59 2.32
4205 5181 1.603236 GGCCATTGGGACGCAAATGA 61.603 55.000 9.19 0.00 36.13 2.57
4206 5182 0.246086 GCCATTGGGACGCAAATGAA 59.754 50.000 9.19 0.00 36.13 2.57
4207 5183 1.134729 GCCATTGGGACGCAAATGAAT 60.135 47.619 9.19 0.00 36.13 2.57
4208 5184 2.542597 CCATTGGGACGCAAATGAATG 58.457 47.619 9.19 2.71 36.13 2.67
4209 5185 2.542597 CATTGGGACGCAAATGAATGG 58.457 47.619 9.19 0.00 36.13 3.16
4210 5186 1.916506 TTGGGACGCAAATGAATGGA 58.083 45.000 1.88 0.00 0.00 3.41
4211 5187 1.916506 TGGGACGCAAATGAATGGAA 58.083 45.000 0.00 0.00 0.00 3.53
4212 5188 2.242926 TGGGACGCAAATGAATGGAAA 58.757 42.857 0.00 0.00 0.00 3.13
4213 5189 2.830923 TGGGACGCAAATGAATGGAAAT 59.169 40.909 0.00 0.00 0.00 2.17
4214 5190 3.189285 GGGACGCAAATGAATGGAAATG 58.811 45.455 0.00 0.00 0.00 2.32
4215 5191 2.604462 GGACGCAAATGAATGGAAATGC 59.396 45.455 0.00 0.00 0.00 3.56
4216 5192 3.252400 GACGCAAATGAATGGAAATGCA 58.748 40.909 0.00 0.00 33.55 3.96
4217 5193 3.864243 ACGCAAATGAATGGAAATGCAT 58.136 36.364 0.00 0.00 33.55 3.96
4218 5194 3.619483 ACGCAAATGAATGGAAATGCATG 59.381 39.130 0.00 0.00 33.55 4.06
4219 5195 3.866327 CGCAAATGAATGGAAATGCATGA 59.134 39.130 0.00 0.00 33.55 3.07
4220 5196 4.330347 CGCAAATGAATGGAAATGCATGAA 59.670 37.500 0.00 0.00 33.55 2.57
4221 5197 5.007234 CGCAAATGAATGGAAATGCATGAAT 59.993 36.000 0.00 0.00 33.55 2.57
4222 5198 6.198687 GCAAATGAATGGAAATGCATGAATG 58.801 36.000 0.00 0.00 34.10 2.67
4223 5199 6.037720 GCAAATGAATGGAAATGCATGAATGA 59.962 34.615 0.00 0.00 34.10 2.57
4224 5200 7.414651 GCAAATGAATGGAAATGCATGAATGAA 60.415 33.333 0.00 0.00 34.10 2.57
4225 5201 8.620416 CAAATGAATGGAAATGCATGAATGAAT 58.380 29.630 0.00 0.00 0.00 2.57
4226 5202 9.839817 AAATGAATGGAAATGCATGAATGAATA 57.160 25.926 0.00 0.00 0.00 1.75
4227 5203 9.489084 AATGAATGGAAATGCATGAATGAATAG 57.511 29.630 0.00 0.00 0.00 1.73
4228 5204 8.240267 TGAATGGAAATGCATGAATGAATAGA 57.760 30.769 0.00 0.00 0.00 1.98
4229 5205 8.697292 TGAATGGAAATGCATGAATGAATAGAA 58.303 29.630 0.00 0.00 0.00 2.10
4230 5206 9.193133 GAATGGAAATGCATGAATGAATAGAAG 57.807 33.333 0.00 0.00 0.00 2.85
4231 5207 7.885009 TGGAAATGCATGAATGAATAGAAGA 57.115 32.000 0.00 0.00 0.00 2.87
4232 5208 8.296211 TGGAAATGCATGAATGAATAGAAGAA 57.704 30.769 0.00 0.00 0.00 2.52
4233 5209 8.751242 TGGAAATGCATGAATGAATAGAAGAAA 58.249 29.630 0.00 0.00 0.00 2.52
4236 5212 8.922058 AATGCATGAATGAATAGAAGAAACAC 57.078 30.769 0.00 0.00 0.00 3.32
4272 5248 7.532571 TGCATGAATAGAAGAAACACATGAAG 58.467 34.615 0.00 0.00 36.70 3.02
4273 5249 7.391275 TGCATGAATAGAAGAAACACATGAAGA 59.609 33.333 0.00 0.00 36.70 2.87
4275 5251 9.552114 CATGAATAGAAGAAACACATGAAGAAC 57.448 33.333 0.00 0.00 36.70 3.01
4277 5253 8.777413 TGAATAGAAGAAACACATGAAGAACAG 58.223 33.333 0.00 0.00 0.00 3.16
4278 5254 5.429957 AGAAGAAACACATGAAGAACAGC 57.570 39.130 0.00 0.00 0.00 4.40
4280 5256 5.357878 AGAAGAAACACATGAAGAACAGCAA 59.642 36.000 0.00 0.00 0.00 3.91
4281 5257 4.925068 AGAAACACATGAAGAACAGCAAC 58.075 39.130 0.00 0.00 0.00 4.17
4282 5258 3.338818 AACACATGAAGAACAGCAACG 57.661 42.857 0.00 0.00 0.00 4.10
4283 5259 2.560504 ACACATGAAGAACAGCAACGA 58.439 42.857 0.00 0.00 0.00 3.85
4284 5260 2.942376 ACACATGAAGAACAGCAACGAA 59.058 40.909 0.00 0.00 0.00 3.85
4285 5261 3.376859 ACACATGAAGAACAGCAACGAAA 59.623 39.130 0.00 0.00 0.00 3.46
4286 5262 3.725740 CACATGAAGAACAGCAACGAAAC 59.274 43.478 0.00 0.00 0.00 2.78
4287 5263 3.243068 ACATGAAGAACAGCAACGAAACC 60.243 43.478 0.00 0.00 0.00 3.27
4288 5264 2.639065 TGAAGAACAGCAACGAAACCT 58.361 42.857 0.00 0.00 0.00 3.50
4289 5265 3.799366 TGAAGAACAGCAACGAAACCTA 58.201 40.909 0.00 0.00 0.00 3.08
4290 5266 3.807622 TGAAGAACAGCAACGAAACCTAG 59.192 43.478 0.00 0.00 0.00 3.02
4292 5268 1.871039 GAACAGCAACGAAACCTAGCA 59.129 47.619 0.00 0.00 0.00 3.49
4296 5272 4.261801 ACAGCAACGAAACCTAGCATAAT 58.738 39.130 0.00 0.00 0.00 1.28
4298 5274 5.183140 ACAGCAACGAAACCTAGCATAATTT 59.817 36.000 0.00 0.00 0.00 1.82
4299 5275 6.373216 ACAGCAACGAAACCTAGCATAATTTA 59.627 34.615 0.00 0.00 0.00 1.40
4300 5276 7.067008 ACAGCAACGAAACCTAGCATAATTTAT 59.933 33.333 0.00 0.00 0.00 1.40
4301 5277 8.556194 CAGCAACGAAACCTAGCATAATTTATA 58.444 33.333 0.00 0.00 0.00 0.98
4302 5278 9.116067 AGCAACGAAACCTAGCATAATTTATAA 57.884 29.630 0.00 0.00 0.00 0.98
4343 5475 1.948104 TATAACGACTGGTGGCATGC 58.052 50.000 9.90 9.90 0.00 4.06
4345 5477 0.036164 TAACGACTGGTGGCATGCTT 59.964 50.000 18.92 2.84 0.00 3.91
4436 5626 2.107141 GAAGGCGATCTGGACGGG 59.893 66.667 0.00 0.00 0.00 5.28
4587 5777 3.711704 CCATGTGGACCTACCTGTTAGAT 59.288 47.826 0.00 0.00 39.86 1.98
4646 5843 2.622942 GTGTTGACATGGACAATGGTGT 59.377 45.455 9.98 0.00 40.94 4.16
4654 5851 1.680735 TGGACAATGGTGTGCTTGAAC 59.319 47.619 0.11 0.00 45.75 3.18
4679 5879 7.171678 ACGTCCTTTCTTCATTGACTAGAAAAG 59.828 37.037 12.36 8.28 37.42 2.27
4685 5886 9.799106 TTTCTTCATTGACTAGAAAAGAGGATT 57.201 29.630 9.92 0.00 35.58 3.01
4686 5887 9.799106 TTCTTCATTGACTAGAAAAGAGGATTT 57.201 29.630 0.00 0.00 0.00 2.17
4689 5890 9.573166 TTCATTGACTAGAAAAGAGGATTTCAA 57.427 29.630 0.00 0.00 40.89 2.69
4690 5891 9.003658 TCATTGACTAGAAAAGAGGATTTCAAC 57.996 33.333 0.00 0.00 40.89 3.18
4728 5929 3.378911 TTTGATTTGAGGGGCGAAAAC 57.621 42.857 0.00 0.00 0.00 2.43
4730 5931 1.885887 TGATTTGAGGGGCGAAAACAG 59.114 47.619 0.00 0.00 0.00 3.16
4731 5932 1.202348 GATTTGAGGGGCGAAAACAGG 59.798 52.381 0.00 0.00 0.00 4.00
4732 5933 0.106419 TTTGAGGGGCGAAAACAGGT 60.106 50.000 0.00 0.00 0.00 4.00
4734 5935 0.988832 TGAGGGGCGAAAACAGGTAT 59.011 50.000 0.00 0.00 0.00 2.73
4735 5936 2.189676 TGAGGGGCGAAAACAGGTATA 58.810 47.619 0.00 0.00 0.00 1.47
4736 5937 2.775384 TGAGGGGCGAAAACAGGTATAT 59.225 45.455 0.00 0.00 0.00 0.86
4737 5938 3.181458 TGAGGGGCGAAAACAGGTATATC 60.181 47.826 0.00 0.00 0.00 1.63
4738 5939 2.775384 AGGGGCGAAAACAGGTATATCA 59.225 45.455 0.00 0.00 0.00 2.15
4739 5940 3.201266 AGGGGCGAAAACAGGTATATCAA 59.799 43.478 0.00 0.00 0.00 2.57
4741 5942 3.001939 GGGCGAAAACAGGTATATCAACG 59.998 47.826 0.00 0.00 0.00 4.10
4744 5945 4.547587 GCGAAAACAGGTATATCAACGACG 60.548 45.833 0.00 0.00 0.00 5.12
4745 5946 4.547587 CGAAAACAGGTATATCAACGACGC 60.548 45.833 0.00 0.00 0.00 5.19
4746 5947 3.795623 AACAGGTATATCAACGACGCT 57.204 42.857 0.00 0.00 0.00 5.07
4747 5948 3.079960 ACAGGTATATCAACGACGCTG 57.920 47.619 0.00 0.00 0.00 5.18
4748 5949 1.787155 CAGGTATATCAACGACGCTGC 59.213 52.381 0.00 0.00 0.00 5.25
4749 5950 0.776451 GGTATATCAACGACGCTGCG 59.224 55.000 21.91 21.91 37.29 5.18
4750 5951 0.776451 GTATATCAACGACGCTGCGG 59.224 55.000 26.95 11.89 35.12 5.69
4751 5952 0.318360 TATATCAACGACGCTGCGGG 60.318 55.000 26.95 19.22 35.12 6.13
4752 5953 2.292794 ATATCAACGACGCTGCGGGT 62.293 55.000 26.95 19.89 35.12 5.28
4753 5954 1.655885 TATCAACGACGCTGCGGGTA 61.656 55.000 26.95 9.87 35.12 3.69
4754 5955 2.884087 ATCAACGACGCTGCGGGTAG 62.884 60.000 26.95 15.62 35.12 3.18
4767 5974 4.261698 GCTGCGGGTAGGAAAAAGTTTTTA 60.262 41.667 13.45 0.00 0.00 1.52
4794 6014 5.413309 TTTGAGGGAACAAAAAGCTCAAA 57.587 34.783 0.00 0.00 36.92 2.69
4799 6019 6.089249 AGGGAACAAAAAGCTCAAACTATG 57.911 37.500 0.00 0.00 0.00 2.23
4803 6023 7.279981 GGGAACAAAAAGCTCAAACTATGTTTT 59.720 33.333 0.00 0.00 30.58 2.43
4805 6025 8.546597 AACAAAAAGCTCAAACTATGTTTTGT 57.453 26.923 12.16 12.16 41.99 2.83
4806 6026 9.646427 AACAAAAAGCTCAAACTATGTTTTGTA 57.354 25.926 16.30 0.00 40.61 2.41
4807 6027 9.301153 ACAAAAAGCTCAAACTATGTTTTGTAG 57.699 29.630 15.03 0.00 40.14 2.74
4840 6095 5.047660 AGTTCAAACTATCTCTCGCTTGAGT 60.048 40.000 0.00 0.00 38.00 3.41
4851 6106 0.519077 CGCTTGAGTGAGGAAAAGGC 59.481 55.000 0.00 0.00 0.00 4.35
4852 6107 1.609208 GCTTGAGTGAGGAAAAGGCA 58.391 50.000 0.00 0.00 0.00 4.75
4973 6229 1.522130 ATAACTAAACCCCGCGGCG 60.522 57.895 22.85 15.60 0.00 6.46
5043 6318 4.778143 ACCCCAATGGCGACGCTC 62.778 66.667 20.77 10.50 37.83 5.03
5059 6334 2.874245 TCCTCCTCCCCTCCCACA 60.874 66.667 0.00 0.00 0.00 4.17
5127 6405 1.003233 GCTTCTCCAGCGGGAACTT 60.003 57.895 7.12 0.00 44.38 2.66
5131 6409 0.541998 TCTCCAGCGGGAACTTCTCA 60.542 55.000 7.12 0.00 44.38 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108709 CATTGCCGTGGGATTGGTTG 60.109 55.000 0.00 0.00 0.00 3.77
1 2 1.887344 GCATTGCCGTGGGATTGGTT 61.887 55.000 0.00 0.00 0.00 3.67
2 3 2.350458 GCATTGCCGTGGGATTGGT 61.350 57.895 0.00 0.00 0.00 3.67
3 4 2.495866 GCATTGCCGTGGGATTGG 59.504 61.111 0.00 0.00 0.00 3.16
4 5 2.102749 CGCATTGCCGTGGGATTG 59.897 61.111 2.41 0.00 34.27 2.67
5 6 3.825611 GCGCATTGCCGTGGGATT 61.826 61.111 0.30 0.00 37.76 3.01
14 15 7.352719 ACTATTAATCTAACTAGCGCATTGC 57.647 36.000 11.47 0.00 46.98 3.56
17 18 9.125906 CGTTTACTATTAATCTAACTAGCGCAT 57.874 33.333 11.47 0.00 0.00 4.73
18 19 7.592533 CCGTTTACTATTAATCTAACTAGCGCA 59.407 37.037 11.47 0.00 0.00 6.09
19 20 7.592903 ACCGTTTACTATTAATCTAACTAGCGC 59.407 37.037 0.00 0.00 0.00 5.92
20 21 9.111702 GACCGTTTACTATTAATCTAACTAGCG 57.888 37.037 0.00 0.00 0.00 4.26
322 323 7.869016 TCGTGTCTACAAAAATCTAAGACAG 57.131 36.000 3.85 0.41 45.17 3.51
380 381 7.290412 ATGAAGAGTCAGCTGTGAAACATCTC 61.290 42.308 14.67 9.44 39.45 2.75
389 390 1.923204 GCGTATGAAGAGTCAGCTGTG 59.077 52.381 14.67 0.00 37.14 3.66
393 394 0.530870 GGGGCGTATGAAGAGTCAGC 60.531 60.000 0.00 0.00 37.14 4.26
398 399 4.931661 TTTAGTAGGGGCGTATGAAGAG 57.068 45.455 0.00 0.00 0.00 2.85
411 412 4.759693 TGGATATGGCGCATTTTTAGTAGG 59.240 41.667 10.83 0.00 0.00 3.18
461 462 0.106769 TCTGGTTTGGACAAGCTGCA 60.107 50.000 1.02 0.00 0.00 4.41
463 464 2.260844 TCTCTGGTTTGGACAAGCTG 57.739 50.000 0.00 0.00 0.00 4.24
497 498 7.827236 TCCAACTTTTGAACGGATATACTTCAT 59.173 33.333 2.02 0.00 0.00 2.57
502 503 7.316544 ACATCCAACTTTTGAACGGATATAC 57.683 36.000 0.00 0.00 34.69 1.47
524 525 9.574458 TCTATTTCATTTGAACAAAACGAAACA 57.426 25.926 19.99 13.43 37.96 2.83
580 581 7.446013 TGAAATCAAATACTCCCGTTGTAAACT 59.554 33.333 0.00 0.00 46.99 2.66
586 587 5.861787 GGTTTGAAATCAAATACTCCCGTTG 59.138 40.000 11.40 0.00 46.12 4.10
588 589 5.321927 AGGTTTGAAATCAAATACTCCCGT 58.678 37.500 11.40 0.00 46.12 5.28
589 590 5.897377 AGGTTTGAAATCAAATACTCCCG 57.103 39.130 11.40 0.00 46.12 5.14
610 611 6.479990 TCTTCATGTGCCGAGAATACATAAAG 59.520 38.462 0.00 0.00 33.38 1.85
614 615 4.406648 TCTTCATGTGCCGAGAATACAT 57.593 40.909 0.00 0.00 35.56 2.29
643 644 0.586319 ACATCGCACACCAAGAAACG 59.414 50.000 0.00 0.00 0.00 3.60
679 680 1.079127 GGTCAGTGACCGATGGTGG 60.079 63.158 26.12 0.00 43.14 4.61
688 689 1.874345 ATCGGACGGTGGTCAGTGAC 61.874 60.000 15.24 15.24 45.28 3.67
689 690 1.605451 ATCGGACGGTGGTCAGTGA 60.605 57.895 0.00 0.00 45.28 3.41
698 699 1.066918 GTTATCGCCATCGGACGGT 59.933 57.895 0.00 0.00 36.13 4.83
924 939 1.269206 GGAATGAGCGAGCTCTCTCTG 60.269 57.143 28.76 8.11 43.12 3.35
958 973 3.462501 GAGGGGAGGGGAGGGGAT 61.463 72.222 0.00 0.00 0.00 3.85
1123 1565 0.246635 ACTGGAATCACGAACGGAGG 59.753 55.000 0.00 0.00 0.00 4.30
1168 1610 3.499157 CCCGAAAATCCGCCGAAATAATA 59.501 43.478 0.00 0.00 0.00 0.98
1172 1614 0.678684 ACCCGAAAATCCGCCGAAAT 60.679 50.000 0.00 0.00 0.00 2.17
1235 1677 2.602257 TTCTACATCTGGCATGACCG 57.398 50.000 0.00 0.00 43.94 4.79
1297 1740 1.678728 GGACCATTTCAGGATGCACGA 60.679 52.381 0.00 0.00 34.76 4.35
1301 1744 2.225467 GCTAGGACCATTTCAGGATGC 58.775 52.381 0.00 0.00 34.76 3.91
1340 1783 7.924103 ACCAAAGCAGTAAAATTAAAGAACG 57.076 32.000 0.00 0.00 0.00 3.95
1356 1799 8.161425 AGGTAAGTAGATTAAGAAACCAAAGCA 58.839 33.333 0.00 0.00 0.00 3.91
1382 1825 1.422024 TGTCTCCCCCGAATGTTCAAA 59.578 47.619 0.00 0.00 0.00 2.69
1397 1840 4.314740 AGTTCTTGACTGACAGTGTCTC 57.685 45.455 23.29 14.16 37.17 3.36
1488 1931 1.768275 CCATGTGCATACTGGGGAGTA 59.232 52.381 0.00 0.00 0.00 2.59
1495 1938 2.210961 CTCAGCTCCATGTGCATACTG 58.789 52.381 9.99 0.00 0.00 2.74
1521 1965 1.731093 GGCCGACAGAGCTACTCTC 59.269 63.158 0.00 0.00 38.99 3.20
1590 2034 4.217510 TCCCATCATAATCCTTTTGGCTG 58.782 43.478 0.00 0.00 40.12 4.85
1628 2073 3.266510 CAAGTTGTGCAGCCTAGGATA 57.733 47.619 14.75 0.00 0.00 2.59
1668 2113 1.003580 GCCAACATCCTGAACTGAGGA 59.996 52.381 0.00 0.00 46.47 3.71
1685 2130 1.807981 CGACGAACTATTGCCGCCA 60.808 57.895 0.00 0.00 0.00 5.69
1701 2146 4.927425 GCAGAAGGTTATCACACTTTACGA 59.073 41.667 0.00 0.00 0.00 3.43
1779 2224 8.879427 ACTTAAATGGTAAGCTAAAACTGGAT 57.121 30.769 0.00 0.00 0.00 3.41
1812 2257 2.031120 TCCCCAGCTGAAACAAAACAG 58.969 47.619 17.39 0.00 37.22 3.16
2136 2581 2.230508 CACAAAGCTGCCTGTGATTGAT 59.769 45.455 21.58 0.00 44.68 2.57
2163 2608 4.882671 AAATTCTTACACAGCTATGCGG 57.117 40.909 0.00 0.00 0.00 5.69
2169 2614 5.106673 GGCTCGTTTAAATTCTTACACAGCT 60.107 40.000 0.00 0.00 30.70 4.24
2191 2636 1.197036 GTGCCGTAGAAAAACAGAGGC 59.803 52.381 0.00 0.00 43.05 4.70
2206 2651 2.032620 AGGGAGTAGTAAGATGTGCCG 58.967 52.381 0.00 0.00 0.00 5.69
2211 2656 7.406031 TGTTTACAGAGGGAGTAGTAAGATG 57.594 40.000 0.00 0.00 0.00 2.90
2223 2668 8.488651 AACGTCTTATATTTGTTTACAGAGGG 57.511 34.615 0.00 0.00 0.00 4.30
2232 2677 9.498176 AGTGACCTAAAACGTCTTATATTTGTT 57.502 29.630 0.00 0.00 0.00 2.83
2235 2680 9.294030 CGTAGTGACCTAAAACGTCTTATATTT 57.706 33.333 0.00 0.00 0.00 1.40
2236 2681 8.462016 ACGTAGTGACCTAAAACGTCTTATATT 58.538 33.333 0.00 0.00 42.62 1.28
2237 2682 7.989826 ACGTAGTGACCTAAAACGTCTTATAT 58.010 34.615 0.00 0.00 42.62 0.86
2238 2683 7.377766 ACGTAGTGACCTAAAACGTCTTATA 57.622 36.000 0.00 0.00 42.62 0.98
2239 2684 6.259550 ACGTAGTGACCTAAAACGTCTTAT 57.740 37.500 0.00 0.00 42.62 1.73
2240 2685 5.689383 ACGTAGTGACCTAAAACGTCTTA 57.311 39.130 0.00 0.00 42.62 2.10
2241 2686 4.574599 ACGTAGTGACCTAAAACGTCTT 57.425 40.909 0.00 0.00 42.62 3.01
2242 2687 4.574599 AACGTAGTGACCTAAAACGTCT 57.425 40.909 0.00 0.00 45.00 4.18
2243 2688 5.452777 ACTAACGTAGTGACCTAAAACGTC 58.547 41.667 0.00 0.00 45.00 4.34
2244 2689 5.438761 ACTAACGTAGTGACCTAAAACGT 57.561 39.130 0.00 0.00 45.00 3.99
2259 2704 9.871238 ATGTAAGATGTTTTAGATCACTAACGT 57.129 29.630 0.00 0.00 38.18 3.99
2272 2717 9.965824 CCTCTGTAAACAAATGTAAGATGTTTT 57.034 29.630 8.22 0.00 42.82 2.43
2273 2718 8.576442 CCCTCTGTAAACAAATGTAAGATGTTT 58.424 33.333 8.04 8.04 46.01 2.83
2274 2719 7.942341 TCCCTCTGTAAACAAATGTAAGATGTT 59.058 33.333 0.00 0.00 38.85 2.71
2275 2720 7.458397 TCCCTCTGTAAACAAATGTAAGATGT 58.542 34.615 0.00 0.00 0.00 3.06
2276 2721 7.607991 ACTCCCTCTGTAAACAAATGTAAGATG 59.392 37.037 0.00 0.00 0.00 2.90
2277 2722 7.690256 ACTCCCTCTGTAAACAAATGTAAGAT 58.310 34.615 0.00 0.00 0.00 2.40
2278 2723 7.074653 ACTCCCTCTGTAAACAAATGTAAGA 57.925 36.000 0.00 0.00 0.00 2.10
2279 2724 8.095169 AGTACTCCCTCTGTAAACAAATGTAAG 58.905 37.037 0.00 0.00 0.00 2.34
2280 2725 7.970102 AGTACTCCCTCTGTAAACAAATGTAA 58.030 34.615 0.00 0.00 0.00 2.41
2281 2726 7.549147 AGTACTCCCTCTGTAAACAAATGTA 57.451 36.000 0.00 0.00 0.00 2.29
2282 2727 6.435292 AGTACTCCCTCTGTAAACAAATGT 57.565 37.500 0.00 0.00 0.00 2.71
2283 2728 6.934645 TGAAGTACTCCCTCTGTAAACAAATG 59.065 38.462 0.00 0.00 0.00 2.32
2284 2729 7.074653 TGAAGTACTCCCTCTGTAAACAAAT 57.925 36.000 0.00 0.00 0.00 2.32
2285 2730 6.488769 TGAAGTACTCCCTCTGTAAACAAA 57.511 37.500 0.00 0.00 0.00 2.83
2286 2731 6.681729 ATGAAGTACTCCCTCTGTAAACAA 57.318 37.500 0.00 0.00 0.00 2.83
2287 2732 7.786046 TTATGAAGTACTCCCTCTGTAAACA 57.214 36.000 0.00 0.00 0.00 2.83
2288 2733 9.668497 AAATTATGAAGTACTCCCTCTGTAAAC 57.332 33.333 0.00 0.00 0.00 2.01
2289 2734 9.886132 GAAATTATGAAGTACTCCCTCTGTAAA 57.114 33.333 0.00 0.00 0.00 2.01
2290 2735 9.042450 TGAAATTATGAAGTACTCCCTCTGTAA 57.958 33.333 0.00 0.00 0.00 2.41
2291 2736 8.603898 TGAAATTATGAAGTACTCCCTCTGTA 57.396 34.615 0.00 0.00 0.00 2.74
2292 2737 7.496346 TGAAATTATGAAGTACTCCCTCTGT 57.504 36.000 0.00 0.00 0.00 3.41
2293 2738 8.970859 AATGAAATTATGAAGTACTCCCTCTG 57.029 34.615 0.00 0.00 32.46 3.35
2424 2869 0.895530 TAGAGCCACGGAGGAAACTG 59.104 55.000 0.00 0.00 44.43 3.16
2484 3044 7.069826 ACAAGTTATCAATTATCAACCATGGGG 59.930 37.037 18.09 8.10 41.29 4.96
2501 3061 7.033791 TCATGGTAACGAGAGAACAAGTTATC 58.966 38.462 0.00 0.00 42.51 1.75
2568 3136 9.002061 AGTAATAGGGTTACAGTAGAGAGTAGT 57.998 37.037 1.38 0.00 0.00 2.73
2569 3137 9.492973 GAGTAATAGGGTTACAGTAGAGAGTAG 57.507 40.741 1.38 0.00 0.00 2.57
2570 3138 8.435982 GGAGTAATAGGGTTACAGTAGAGAGTA 58.564 40.741 1.38 0.00 0.00 2.59
2571 3139 7.129193 AGGAGTAATAGGGTTACAGTAGAGAGT 59.871 40.741 1.38 0.00 0.00 3.24
2572 3140 7.519927 AGGAGTAATAGGGTTACAGTAGAGAG 58.480 42.308 1.38 0.00 0.00 3.20
2573 3141 7.463054 AGGAGTAATAGGGTTACAGTAGAGA 57.537 40.000 1.38 0.00 0.00 3.10
2574 3142 8.536340 AAAGGAGTAATAGGGTTACAGTAGAG 57.464 38.462 1.38 0.00 0.00 2.43
2575 3143 8.755977 CAAAAGGAGTAATAGGGTTACAGTAGA 58.244 37.037 1.38 0.00 0.00 2.59
2576 3144 7.985752 CCAAAAGGAGTAATAGGGTTACAGTAG 59.014 40.741 1.38 0.00 0.00 2.57
2577 3145 7.092757 CCCAAAAGGAGTAATAGGGTTACAGTA 60.093 40.741 0.00 0.00 38.24 2.74
2578 3146 6.296836 CCCAAAAGGAGTAATAGGGTTACAGT 60.297 42.308 0.00 0.00 38.24 3.55
2579 3147 6.069847 TCCCAAAAGGAGTAATAGGGTTACAG 60.070 42.308 0.00 0.00 40.93 2.74
2580 3148 5.791664 TCCCAAAAGGAGTAATAGGGTTACA 59.208 40.000 0.00 0.00 40.93 2.41
2581 3149 6.317663 TCCCAAAAGGAGTAATAGGGTTAC 57.682 41.667 0.00 0.00 40.93 2.50
2616 3186 5.347342 CACAACAGAACATAGCCAAAACAA 58.653 37.500 0.00 0.00 0.00 2.83
2668 3238 5.701290 ACTCAGACTTTGCAGTAACATTACC 59.299 40.000 0.00 0.00 34.19 2.85
2672 3242 4.960938 TGACTCAGACTTTGCAGTAACAT 58.039 39.130 0.00 0.00 31.22 2.71
2732 3305 8.760569 GCTACAAGAGAGCAAAGATATAGTTTC 58.239 37.037 0.00 0.00 39.84 2.78
2789 3364 9.521841 TCATAAAAGAGAGATACGATGTATCCT 57.478 33.333 12.13 9.48 0.00 3.24
2845 3420 8.090788 AGAGATGGAAAGGCAGTTAATTAGTA 57.909 34.615 0.00 0.00 0.00 1.82
2847 3422 7.872113 AAGAGATGGAAAGGCAGTTAATTAG 57.128 36.000 0.00 0.00 0.00 1.73
2882 3457 5.123186 TCTCACACTTACAAAACCTGTTGTG 59.877 40.000 0.00 0.00 42.16 3.33
2997 3572 2.742053 CTCCACGTTACAACCATTCTGG 59.258 50.000 0.00 0.00 45.02 3.86
3007 3582 3.508402 TGCAAGATAGTCTCCACGTTACA 59.492 43.478 0.00 0.00 0.00 2.41
3013 3588 4.697352 ACACAAATGCAAGATAGTCTCCAC 59.303 41.667 0.00 0.00 0.00 4.02
3022 3597 6.693466 TCATTGAATGACACAAATGCAAGAT 58.307 32.000 3.29 0.00 33.59 2.40
3059 3634 7.148086 TGCTTTTACAAAGGTAATAGGATGCTG 60.148 37.037 0.00 0.00 39.15 4.41
3090 3665 2.549064 TGCTTTGCTGCTAGTGAGAA 57.451 45.000 0.00 0.00 0.00 2.87
3091 3666 2.146342 GTTGCTTTGCTGCTAGTGAGA 58.854 47.619 0.00 0.00 0.00 3.27
3104 3679 5.049828 GCACCTGTGAAATTTAGTTGCTTT 58.950 37.500 0.51 0.00 0.00 3.51
3125 3700 4.214545 CCTTAATCGGTTGTGTAGTTTGCA 59.785 41.667 0.00 0.00 0.00 4.08
3144 3719 0.561184 TAGCCTGCTAGAGCCCCTTA 59.439 55.000 0.00 0.00 41.18 2.69
3148 3723 2.293170 CTTTTTAGCCTGCTAGAGCCC 58.707 52.381 0.00 0.00 41.18 5.19
3149 3724 2.992593 ACTTTTTAGCCTGCTAGAGCC 58.007 47.619 0.00 0.00 41.18 4.70
3151 3726 9.036671 GTAGATTAACTTTTTAGCCTGCTAGAG 57.963 37.037 0.00 2.68 0.00 2.43
3152 3727 7.985752 GGTAGATTAACTTTTTAGCCTGCTAGA 59.014 37.037 0.00 0.00 0.00 2.43
3153 3728 7.769044 TGGTAGATTAACTTTTTAGCCTGCTAG 59.231 37.037 0.00 0.00 0.00 3.42
3228 3805 9.350951 GGCCCAAAATGAACTACTATTACTAAT 57.649 33.333 0.00 0.00 0.00 1.73
3230 3807 6.987992 CGGCCCAAAATGAACTACTATTACTA 59.012 38.462 0.00 0.00 0.00 1.82
3235 3812 4.080526 ACTCGGCCCAAAATGAACTACTAT 60.081 41.667 0.00 0.00 0.00 2.12
3238 3815 2.161609 CACTCGGCCCAAAATGAACTAC 59.838 50.000 0.00 0.00 0.00 2.73
3254 3831 4.393062 AGGAATTTGACTATGCAACACTCG 59.607 41.667 0.00 0.00 0.00 4.18
3270 3848 1.203052 CACGCATGAAGCCAGGAATTT 59.797 47.619 0.00 0.00 41.38 1.82
3283 3861 2.095617 TGAGCTCAAACAATCACGCATG 60.096 45.455 15.67 0.00 0.00 4.06
3284 3862 2.153645 TGAGCTCAAACAATCACGCAT 58.846 42.857 15.67 0.00 0.00 4.73
3287 3865 2.095617 TGCATGAGCTCAAACAATCACG 60.096 45.455 22.50 2.18 42.74 4.35
3288 3866 3.564235 TGCATGAGCTCAAACAATCAC 57.436 42.857 22.50 4.76 42.74 3.06
3289 3867 3.508402 ACATGCATGAGCTCAAACAATCA 59.492 39.130 32.75 12.15 42.74 2.57
3292 3870 4.325028 AAACATGCATGAGCTCAAACAA 57.675 36.364 32.75 7.36 42.74 2.83
3293 3871 5.648178 ATAAACATGCATGAGCTCAAACA 57.352 34.783 32.75 21.27 42.74 2.83
3294 3872 8.464770 TTTTATAAACATGCATGAGCTCAAAC 57.535 30.769 32.75 16.07 42.74 2.93
3295 3873 8.306038 ACTTTTATAAACATGCATGAGCTCAAA 58.694 29.630 32.75 20.79 42.74 2.69
3296 3874 7.756272 CACTTTTATAAACATGCATGAGCTCAA 59.244 33.333 32.75 16.64 42.74 3.02
3297 3875 7.094248 ACACTTTTATAAACATGCATGAGCTCA 60.094 33.333 32.75 20.79 42.74 4.26
3298 3876 7.219535 CACACTTTTATAAACATGCATGAGCTC 59.780 37.037 32.75 6.82 42.74 4.09
3299 3877 7.031372 CACACTTTTATAAACATGCATGAGCT 58.969 34.615 32.75 17.51 42.74 4.09
3300 3878 6.254157 CCACACTTTTATAAACATGCATGAGC 59.746 38.462 32.75 0.00 42.57 4.26
3301 3879 7.537715 TCCACACTTTTATAAACATGCATGAG 58.462 34.615 32.75 18.34 0.00 2.90
3302 3880 7.392953 TCTCCACACTTTTATAAACATGCATGA 59.607 33.333 32.75 11.53 0.00 3.07
3303 3881 7.485913 GTCTCCACACTTTTATAAACATGCATG 59.514 37.037 25.09 25.09 0.00 4.06
3304 3882 7.176515 TGTCTCCACACTTTTATAAACATGCAT 59.823 33.333 0.00 0.00 0.00 3.96
3305 3883 6.488344 TGTCTCCACACTTTTATAAACATGCA 59.512 34.615 0.00 0.00 0.00 3.96
3306 3884 6.908825 TGTCTCCACACTTTTATAAACATGC 58.091 36.000 0.00 0.00 0.00 4.06
3307 3885 8.023128 CCTTGTCTCCACACTTTTATAAACATG 58.977 37.037 0.00 2.16 29.76 3.21
3308 3886 7.724061 ACCTTGTCTCCACACTTTTATAAACAT 59.276 33.333 0.00 0.00 29.76 2.71
3309 3887 7.012894 CACCTTGTCTCCACACTTTTATAAACA 59.987 37.037 0.00 0.00 29.76 2.83
3310 3888 7.227910 TCACCTTGTCTCCACACTTTTATAAAC 59.772 37.037 0.00 0.00 29.76 2.01
3311 3889 7.284074 TCACCTTGTCTCCACACTTTTATAAA 58.716 34.615 0.00 0.00 29.76 1.40
3312 3890 6.833041 TCACCTTGTCTCCACACTTTTATAA 58.167 36.000 0.00 0.00 29.76 0.98
3313 3891 6.428083 TCACCTTGTCTCCACACTTTTATA 57.572 37.500 0.00 0.00 29.76 0.98
3314 3892 5.304686 TCACCTTGTCTCCACACTTTTAT 57.695 39.130 0.00 0.00 29.76 1.40
3315 3893 4.764050 TCACCTTGTCTCCACACTTTTA 57.236 40.909 0.00 0.00 29.76 1.52
3316 3894 3.644966 TCACCTTGTCTCCACACTTTT 57.355 42.857 0.00 0.00 29.76 2.27
3317 3895 3.864789 ATCACCTTGTCTCCACACTTT 57.135 42.857 0.00 0.00 29.76 2.66
3318 3896 3.864789 AATCACCTTGTCTCCACACTT 57.135 42.857 0.00 0.00 29.76 3.16
3319 3897 3.480470 CAAATCACCTTGTCTCCACACT 58.520 45.455 0.00 0.00 29.76 3.55
3320 3898 2.554032 CCAAATCACCTTGTCTCCACAC 59.446 50.000 0.00 0.00 29.76 3.82
3321 3899 2.488891 CCCAAATCACCTTGTCTCCACA 60.489 50.000 0.00 0.00 0.00 4.17
3322 3900 2.162681 CCCAAATCACCTTGTCTCCAC 58.837 52.381 0.00 0.00 0.00 4.02
3323 3901 1.547675 GCCCAAATCACCTTGTCTCCA 60.548 52.381 0.00 0.00 0.00 3.86
3324 3902 1.177401 GCCCAAATCACCTTGTCTCC 58.823 55.000 0.00 0.00 0.00 3.71
3325 3903 1.909700 TGCCCAAATCACCTTGTCTC 58.090 50.000 0.00 0.00 0.00 3.36
3326 3904 2.380064 TTGCCCAAATCACCTTGTCT 57.620 45.000 0.00 0.00 0.00 3.41
3327 3905 3.467374 TTTTGCCCAAATCACCTTGTC 57.533 42.857 0.00 0.00 0.00 3.18
3328 3906 3.199727 ACTTTTTGCCCAAATCACCTTGT 59.800 39.130 0.00 0.00 0.00 3.16
3329 3907 3.807553 ACTTTTTGCCCAAATCACCTTG 58.192 40.909 0.00 0.00 0.00 3.61
3330 3908 4.653801 AGTACTTTTTGCCCAAATCACCTT 59.346 37.500 0.00 0.00 0.00 3.50
3331 3909 4.223144 AGTACTTTTTGCCCAAATCACCT 58.777 39.130 0.00 0.00 0.00 4.00
3332 3910 4.600692 AGTACTTTTTGCCCAAATCACC 57.399 40.909 0.00 0.00 0.00 4.02
3333 3911 4.749598 CCAAGTACTTTTTGCCCAAATCAC 59.250 41.667 5.07 0.00 0.00 3.06
3334 3912 4.651503 TCCAAGTACTTTTTGCCCAAATCA 59.348 37.500 5.07 0.00 0.00 2.57
3335 3913 5.208463 TCCAAGTACTTTTTGCCCAAATC 57.792 39.130 5.07 0.00 0.00 2.17
3336 3914 5.622346 TTCCAAGTACTTTTTGCCCAAAT 57.378 34.783 5.07 0.00 0.00 2.32
3337 3915 5.622346 ATTCCAAGTACTTTTTGCCCAAA 57.378 34.783 5.07 0.00 0.00 3.28
3338 3916 6.071984 TCTATTCCAAGTACTTTTTGCCCAA 58.928 36.000 5.07 0.00 0.00 4.12
3339 3917 5.636123 TCTATTCCAAGTACTTTTTGCCCA 58.364 37.500 5.07 0.00 0.00 5.36
3340 3918 6.775594 ATCTATTCCAAGTACTTTTTGCCC 57.224 37.500 5.07 0.00 0.00 5.36
3341 3919 7.418408 GCTATCTATTCCAAGTACTTTTTGCC 58.582 38.462 5.07 0.00 0.00 4.52
3342 3920 7.011109 TCGCTATCTATTCCAAGTACTTTTTGC 59.989 37.037 5.07 0.00 0.00 3.68
3343 3921 8.420374 TCGCTATCTATTCCAAGTACTTTTTG 57.580 34.615 5.07 0.00 0.00 2.44
3344 3922 9.614792 AATCGCTATCTATTCCAAGTACTTTTT 57.385 29.630 5.07 0.00 0.00 1.94
3345 3923 9.262358 GAATCGCTATCTATTCCAAGTACTTTT 57.738 33.333 5.07 0.00 0.00 2.27
3346 3924 7.873505 GGAATCGCTATCTATTCCAAGTACTTT 59.126 37.037 5.07 0.00 46.95 2.66
3347 3925 7.379750 GGAATCGCTATCTATTCCAAGTACTT 58.620 38.462 1.12 1.12 46.95 2.24
3348 3926 6.926313 GGAATCGCTATCTATTCCAAGTACT 58.074 40.000 8.80 0.00 46.95 2.73
3355 3933 6.253727 CACATAACGGAATCGCTATCTATTCC 59.746 42.308 0.00 0.00 45.15 3.01
3356 3934 7.027760 TCACATAACGGAATCGCTATCTATTC 58.972 38.462 0.00 0.00 40.63 1.75
3391 3971 2.288666 ACTTGAAAGCGCAACTCTCAA 58.711 42.857 11.47 9.59 0.00 3.02
3392 3972 1.953559 ACTTGAAAGCGCAACTCTCA 58.046 45.000 11.47 1.09 0.00 3.27
3407 3987 7.761249 ACAATCTTTGAAAAGGTCAAGAACTTG 59.239 33.333 0.38 8.09 46.85 3.16
3408 3988 7.840931 ACAATCTTTGAAAAGGTCAAGAACTT 58.159 30.769 3.08 0.00 46.85 2.66
3426 4014 7.886629 ATGCATGTAAAGACCATACAATCTT 57.113 32.000 0.00 0.00 36.88 2.40
3435 4023 7.592938 CAGAAACTAAATGCATGTAAAGACCA 58.407 34.615 0.00 0.00 0.00 4.02
3436 4024 6.528072 GCAGAAACTAAATGCATGTAAAGACC 59.472 38.462 0.00 0.00 39.75 3.85
3464 4052 9.823647 TGTTGAAAGGAGTAATGCAATTTTTAA 57.176 25.926 0.00 0.00 37.87 1.52
3471 4059 6.899393 ATTCTGTTGAAAGGAGTAATGCAA 57.101 33.333 0.00 0.00 35.63 4.08
3536 4331 7.798596 ATGGATGATGTATGTGAAGAAAGAC 57.201 36.000 0.00 0.00 0.00 3.01
3537 4332 8.812513 AAATGGATGATGTATGTGAAGAAAGA 57.187 30.769 0.00 0.00 0.00 2.52
3538 4333 9.512435 GAAAATGGATGATGTATGTGAAGAAAG 57.488 33.333 0.00 0.00 0.00 2.62
3539 4334 9.022884 TGAAAATGGATGATGTATGTGAAGAAA 57.977 29.630 0.00 0.00 0.00 2.52
3540 4335 8.578448 TGAAAATGGATGATGTATGTGAAGAA 57.422 30.769 0.00 0.00 0.00 2.52
3599 4403 5.200368 ACTAGTTTTGCCAAAATGGTCAG 57.800 39.130 5.81 2.57 40.46 3.51
3636 4440 7.987458 GGACATCAACAAGATATTCTGGAACTA 59.013 37.037 0.00 0.00 34.43 2.24
3641 4445 6.351711 TCAGGACATCAACAAGATATTCTGG 58.648 40.000 0.00 0.00 34.43 3.86
3743 4551 4.431809 CATTTTCAGCAACACAACCTTCA 58.568 39.130 0.00 0.00 0.00 3.02
3847 4661 8.325421 TCAATGCAGCAACAATTTAATCAATT 57.675 26.923 0.00 0.00 35.24 2.32
3901 4715 8.589338 ACTAAATTAGAAGATCCTATGCATCGT 58.411 33.333 0.19 0.00 0.00 3.73
3904 4718 8.884323 TCCACTAAATTAGAAGATCCTATGCAT 58.116 33.333 7.06 3.79 0.00 3.96
3906 4720 9.213799 CTTCCACTAAATTAGAAGATCCTATGC 57.786 37.037 7.06 0.00 38.38 3.14
3969 4896 6.524734 CCTCCAACAATACATGACAGCTATA 58.475 40.000 0.00 0.00 0.00 1.31
3990 4917 3.426568 GCTTCACCACTGCGCCTC 61.427 66.667 4.18 0.00 0.00 4.70
3991 4918 4.254709 TGCTTCACCACTGCGCCT 62.255 61.111 4.18 0.00 0.00 5.52
4007 4976 2.282462 GGCACAAGTGGGGGAGTG 60.282 66.667 2.00 0.00 35.19 3.51
4019 4988 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
4020 4989 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
4021 4990 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
4042 5018 0.108138 GTAATGCAGAGAGGCCACGT 60.108 55.000 5.01 0.00 0.00 4.49
4043 5019 0.108186 TGTAATGCAGAGAGGCCACG 60.108 55.000 5.01 0.00 0.00 4.94
4044 5020 2.338577 ATGTAATGCAGAGAGGCCAC 57.661 50.000 5.01 0.00 0.00 5.01
4045 5021 2.025981 ACAATGTAATGCAGAGAGGCCA 60.026 45.455 5.01 0.00 0.00 5.36
4046 5022 2.357009 CACAATGTAATGCAGAGAGGCC 59.643 50.000 0.00 0.00 0.00 5.19
4060 5036 0.611896 GCCTTACCCCTGCACAATGT 60.612 55.000 0.00 0.00 0.00 2.71
4063 5039 0.539438 CAAGCCTTACCCCTGCACAA 60.539 55.000 0.00 0.00 0.00 3.33
4086 5062 2.302157 GGGTCTGGGGAAGGATTATACG 59.698 54.545 0.00 0.00 0.00 3.06
4123 5099 9.585099 CAATAAAACATGGCAGCTATCTAAAAA 57.415 29.630 0.00 0.00 0.00 1.94
4126 5102 7.880160 ACAATAAAACATGGCAGCTATCTAA 57.120 32.000 0.00 0.00 0.00 2.10
4130 5106 6.129179 ACCTACAATAAAACATGGCAGCTAT 58.871 36.000 0.00 0.00 0.00 2.97
4131 5107 5.505780 ACCTACAATAAAACATGGCAGCTA 58.494 37.500 0.00 0.00 0.00 3.32
4132 5108 4.344104 ACCTACAATAAAACATGGCAGCT 58.656 39.130 0.00 0.00 0.00 4.24
4133 5109 4.718940 ACCTACAATAAAACATGGCAGC 57.281 40.909 0.00 0.00 0.00 5.25
4134 5110 6.751514 TGTACCTACAATAAAACATGGCAG 57.248 37.500 0.00 0.00 32.40 4.85
4135 5111 7.526142 TTTGTACCTACAATAAAACATGGCA 57.474 32.000 0.00 0.00 44.72 4.92
4152 5128 7.547722 CCCTGGTTTTAAGCAATTATTTGTACC 59.452 37.037 0.00 0.00 35.79 3.34
4153 5129 7.547722 CCCCTGGTTTTAAGCAATTATTTGTAC 59.452 37.037 0.00 0.00 35.79 2.90
4155 5131 6.472016 CCCCTGGTTTTAAGCAATTATTTGT 58.528 36.000 0.00 0.00 35.79 2.83
4156 5132 5.353956 GCCCCTGGTTTTAAGCAATTATTTG 59.646 40.000 0.00 0.00 35.79 2.32
4157 5133 5.496556 GCCCCTGGTTTTAAGCAATTATTT 58.503 37.500 0.00 0.00 35.79 1.40
4163 5139 0.834261 GGGCCCCTGGTTTTAAGCAA 60.834 55.000 12.23 0.00 35.79 3.91
4185 5161 2.709883 ATTTGCGTCCCAATGGCCG 61.710 57.895 0.00 0.00 32.49 6.13
4198 5174 5.804692 TTCATGCATTTCCATTCATTTGC 57.195 34.783 0.00 0.00 0.00 3.68
4199 5175 7.546778 TCATTCATGCATTTCCATTCATTTG 57.453 32.000 0.00 0.00 0.00 2.32
4200 5176 8.746052 ATTCATTCATGCATTTCCATTCATTT 57.254 26.923 0.00 0.00 0.00 2.32
4201 5177 9.489084 CTATTCATTCATGCATTTCCATTCATT 57.511 29.630 0.00 0.00 0.00 2.57
4202 5178 8.866093 TCTATTCATTCATGCATTTCCATTCAT 58.134 29.630 0.00 0.00 0.00 2.57
4203 5179 8.240267 TCTATTCATTCATGCATTTCCATTCA 57.760 30.769 0.00 0.00 0.00 2.57
4205 5181 8.920174 TCTTCTATTCATTCATGCATTTCCATT 58.080 29.630 0.00 0.00 0.00 3.16
4206 5182 8.473358 TCTTCTATTCATTCATGCATTTCCAT 57.527 30.769 0.00 0.00 0.00 3.41
4207 5183 7.885009 TCTTCTATTCATTCATGCATTTCCA 57.115 32.000 0.00 0.00 0.00 3.53
4208 5184 9.028185 GTTTCTTCTATTCATTCATGCATTTCC 57.972 33.333 0.00 0.00 0.00 3.13
4209 5185 9.577110 TGTTTCTTCTATTCATTCATGCATTTC 57.423 29.630 0.00 0.00 0.00 2.17
4210 5186 9.362539 GTGTTTCTTCTATTCATTCATGCATTT 57.637 29.630 0.00 0.00 0.00 2.32
4211 5187 7.977853 GGTGTTTCTTCTATTCATTCATGCATT 59.022 33.333 0.00 0.00 0.00 3.56
4212 5188 7.123098 TGGTGTTTCTTCTATTCATTCATGCAT 59.877 33.333 0.00 0.00 0.00 3.96
4213 5189 6.433716 TGGTGTTTCTTCTATTCATTCATGCA 59.566 34.615 0.00 0.00 0.00 3.96
4214 5190 6.855836 TGGTGTTTCTTCTATTCATTCATGC 58.144 36.000 0.00 0.00 0.00 4.06
4215 5191 9.865321 ATTTGGTGTTTCTTCTATTCATTCATG 57.135 29.630 0.00 0.00 0.00 3.07
4216 5192 9.865321 CATTTGGTGTTTCTTCTATTCATTCAT 57.135 29.630 0.00 0.00 0.00 2.57
4217 5193 8.306038 CCATTTGGTGTTTCTTCTATTCATTCA 58.694 33.333 0.00 0.00 0.00 2.57
4218 5194 8.522830 TCCATTTGGTGTTTCTTCTATTCATTC 58.477 33.333 0.00 0.00 36.34 2.67
4219 5195 8.421249 TCCATTTGGTGTTTCTTCTATTCATT 57.579 30.769 0.00 0.00 36.34 2.57
4220 5196 8.421249 TTCCATTTGGTGTTTCTTCTATTCAT 57.579 30.769 0.00 0.00 36.34 2.57
4221 5197 7.831691 TTCCATTTGGTGTTTCTTCTATTCA 57.168 32.000 0.00 0.00 36.34 2.57
4222 5198 9.143631 CATTTCCATTTGGTGTTTCTTCTATTC 57.856 33.333 0.00 0.00 36.34 1.75
4223 5199 7.603784 GCATTTCCATTTGGTGTTTCTTCTATT 59.396 33.333 0.00 0.00 36.34 1.73
4224 5200 7.099120 GCATTTCCATTTGGTGTTTCTTCTAT 58.901 34.615 0.00 0.00 36.34 1.98
4225 5201 6.041409 TGCATTTCCATTTGGTGTTTCTTCTA 59.959 34.615 0.00 0.00 36.34 2.10
4226 5202 5.163322 TGCATTTCCATTTGGTGTTTCTTCT 60.163 36.000 0.00 0.00 36.34 2.85
4227 5203 5.055812 TGCATTTCCATTTGGTGTTTCTTC 58.944 37.500 0.00 0.00 36.34 2.87
4228 5204 5.033589 TGCATTTCCATTTGGTGTTTCTT 57.966 34.783 0.00 0.00 36.34 2.52
4229 5205 4.686191 TGCATTTCCATTTGGTGTTTCT 57.314 36.364 0.00 0.00 36.34 2.52
4230 5206 4.996122 TCATGCATTTCCATTTGGTGTTTC 59.004 37.500 0.00 0.00 36.34 2.78
4231 5207 4.970711 TCATGCATTTCCATTTGGTGTTT 58.029 34.783 0.00 0.00 36.34 2.83
4232 5208 4.620589 TCATGCATTTCCATTTGGTGTT 57.379 36.364 0.00 0.00 36.34 3.32
4233 5209 4.620589 TTCATGCATTTCCATTTGGTGT 57.379 36.364 0.00 0.00 36.34 4.16
4236 5212 7.494211 TCTTCTATTCATGCATTTCCATTTGG 58.506 34.615 0.00 0.00 0.00 3.28
4272 5248 1.871039 TGCTAGGTTTCGTTGCTGTTC 59.129 47.619 0.00 0.00 0.00 3.18
4273 5249 1.961793 TGCTAGGTTTCGTTGCTGTT 58.038 45.000 0.00 0.00 0.00 3.16
4275 5251 4.882671 ATTATGCTAGGTTTCGTTGCTG 57.117 40.909 0.00 0.00 0.00 4.41
4277 5253 9.166126 GTTATAAATTATGCTAGGTTTCGTTGC 57.834 33.333 0.00 0.00 0.00 4.17
4278 5254 9.365311 CGTTATAAATTATGCTAGGTTTCGTTG 57.635 33.333 0.00 0.00 0.00 4.10
4280 5256 8.876275 TCGTTATAAATTATGCTAGGTTTCGT 57.124 30.769 0.00 0.00 0.00 3.85
4316 5448 7.633193 TGCCACCAGTCGTTATAAAATTATT 57.367 32.000 0.00 0.00 0.00 1.40
4317 5449 7.648142 CATGCCACCAGTCGTTATAAAATTAT 58.352 34.615 0.00 0.00 0.00 1.28
4318 5450 6.459024 GCATGCCACCAGTCGTTATAAAATTA 60.459 38.462 6.36 0.00 0.00 1.40
4319 5451 5.678616 GCATGCCACCAGTCGTTATAAAATT 60.679 40.000 6.36 0.00 0.00 1.82
4321 5453 3.127895 GCATGCCACCAGTCGTTATAAAA 59.872 43.478 6.36 0.00 0.00 1.52
4324 5456 1.484653 AGCATGCCACCAGTCGTTATA 59.515 47.619 15.66 0.00 0.00 0.98
4335 5467 2.925563 GCAACTCATAAAAGCATGCCAC 59.074 45.455 15.66 0.00 0.00 5.01
4343 5475 8.607459 AGATGAATTAGTCGCAACTCATAAAAG 58.393 33.333 0.00 0.00 36.92 2.27
4345 5477 7.981789 AGAGATGAATTAGTCGCAACTCATAAA 59.018 33.333 0.00 0.00 36.92 1.40
4436 5626 1.202359 GCGTGAAGAGATGGAGGACTC 60.202 57.143 0.00 0.00 0.00 3.36
4587 5777 8.525290 AAAAAGAAGAGAGAAAAATGACTCCA 57.475 30.769 0.00 0.00 34.13 3.86
4616 5806 1.272648 CCATGTCAACACAAGGGGGAT 60.273 52.381 0.00 0.00 37.68 3.85
4646 5843 2.912771 TGAAGAAAGGACGTTCAAGCA 58.087 42.857 0.00 0.00 0.00 3.91
4654 5851 7.385205 TCTTTTCTAGTCAATGAAGAAAGGACG 59.615 37.037 14.34 5.56 39.18 4.79
4708 5909 2.695666 TGTTTTCGCCCCTCAAATCAAA 59.304 40.909 0.00 0.00 0.00 2.69
4709 5910 2.295909 CTGTTTTCGCCCCTCAAATCAA 59.704 45.455 0.00 0.00 0.00 2.57
4710 5911 1.885887 CTGTTTTCGCCCCTCAAATCA 59.114 47.619 0.00 0.00 0.00 2.57
4712 5913 1.256812 CCTGTTTTCGCCCCTCAAAT 58.743 50.000 0.00 0.00 0.00 2.32
4713 5914 0.106419 ACCTGTTTTCGCCCCTCAAA 60.106 50.000 0.00 0.00 0.00 2.69
4714 5915 0.766131 TACCTGTTTTCGCCCCTCAA 59.234 50.000 0.00 0.00 0.00 3.02
4715 5916 0.988832 ATACCTGTTTTCGCCCCTCA 59.011 50.000 0.00 0.00 0.00 3.86
4716 5917 2.994186 TATACCTGTTTTCGCCCCTC 57.006 50.000 0.00 0.00 0.00 4.30
4718 5919 3.202829 TGATATACCTGTTTTCGCCCC 57.797 47.619 0.00 0.00 0.00 5.80
4721 5922 4.547587 CGTCGTTGATATACCTGTTTTCGC 60.548 45.833 0.00 0.00 0.00 4.70
4722 5923 4.547587 GCGTCGTTGATATACCTGTTTTCG 60.548 45.833 0.00 0.00 0.00 3.46
4728 5929 1.787155 GCAGCGTCGTTGATATACCTG 59.213 52.381 13.70 0.00 0.00 4.00
4730 5931 0.776451 CGCAGCGTCGTTGATATACC 59.224 55.000 13.70 0.00 0.00 2.73
4731 5932 0.776451 CCGCAGCGTCGTTGATATAC 59.224 55.000 15.05 0.00 0.00 1.47
4732 5933 0.318360 CCCGCAGCGTCGTTGATATA 60.318 55.000 15.05 0.00 0.00 0.86
4734 5935 1.655885 TACCCGCAGCGTCGTTGATA 61.656 55.000 15.05 0.00 0.00 2.15
4735 5936 2.884087 CTACCCGCAGCGTCGTTGAT 62.884 60.000 15.05 0.00 0.00 2.57
4736 5937 3.620300 CTACCCGCAGCGTCGTTGA 62.620 63.158 15.05 0.00 0.00 3.18
4737 5938 3.179265 CTACCCGCAGCGTCGTTG 61.179 66.667 15.05 4.52 0.00 4.10
4738 5939 4.430765 CCTACCCGCAGCGTCGTT 62.431 66.667 15.05 0.00 0.00 3.85
4741 5942 0.952010 TTTTTCCTACCCGCAGCGTC 60.952 55.000 15.05 0.00 0.00 5.19
4744 5945 1.244816 AACTTTTTCCTACCCGCAGC 58.755 50.000 0.00 0.00 0.00 5.25
4745 5946 4.316205 AAAAACTTTTTCCTACCCGCAG 57.684 40.909 0.00 0.00 0.00 5.18
4746 5947 4.888823 AGTAAAAACTTTTTCCTACCCGCA 59.111 37.500 2.68 0.00 0.00 5.69
4747 5948 5.443185 AGTAAAAACTTTTTCCTACCCGC 57.557 39.130 2.68 0.00 0.00 6.13
4775 5995 4.655762 AGTTTGAGCTTTTTGTTCCCTC 57.344 40.909 0.00 0.00 0.00 4.30
4818 6067 5.048013 TCACTCAAGCGAGAGATAGTTTGAA 60.048 40.000 14.20 0.00 42.34 2.69
4834 6089 2.575532 TGTGCCTTTTCCTCACTCAAG 58.424 47.619 0.00 0.00 0.00 3.02
4840 6095 4.202111 GCTTTAGTTTGTGCCTTTTCCTCA 60.202 41.667 0.00 0.00 0.00 3.86
4851 6106 0.879090 GTCCGGGGCTTTAGTTTGTG 59.121 55.000 0.00 0.00 0.00 3.33
4852 6107 0.604511 CGTCCGGGGCTTTAGTTTGT 60.605 55.000 0.00 0.00 0.00 2.83
4865 6120 2.202492 CTCAAGCTCGACGTCCGG 60.202 66.667 10.58 0.00 39.14 5.14
4866 6121 2.202492 CCTCAAGCTCGACGTCCG 60.202 66.667 10.58 5.50 40.25 4.79
4879 6134 2.929903 GCCAATTTGCCACGCCTCA 61.930 57.895 0.00 0.00 0.00 3.86
4948 6204 0.256752 GGGGTTTAGTTATGGGCCGT 59.743 55.000 2.58 2.58 0.00 5.68
4973 6229 2.194868 CGGGGTTGGGGATAAGCC 59.805 66.667 0.00 0.00 45.23 4.35
4974 6230 2.194868 CCGGGGTTGGGGATAAGC 59.805 66.667 0.00 0.00 0.00 3.09
4975 6231 2.194868 GCCGGGGTTGGGGATAAG 59.805 66.667 2.18 0.00 0.00 1.73
5029 6286 2.892425 GAGGAGCGTCGCCATTGG 60.892 66.667 14.86 0.00 0.00 3.16
5043 6318 2.689034 GTGTGGGAGGGGAGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
5120 6398 1.079057 GCGTCCCTGAGAAGTTCCC 60.079 63.158 0.00 0.00 0.00 3.97
5319 6612 4.776322 CCCGGCGGCATGTTGAGA 62.776 66.667 23.20 0.00 0.00 3.27
5388 6684 0.112412 TCTTGGCCTTTCCCTTGTCC 59.888 55.000 3.32 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.