Multiple sequence alignment - TraesCS5A01G444800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G444800 chr5A 100.000 3969 0 0 1 3969 624736651 624732683 0.000000e+00 7330.0
1 TraesCS5A01G444800 chr5D 97.413 1817 40 3 1183 2999 500867357 500869166 0.000000e+00 3088.0
2 TraesCS5A01G444800 chr5D 94.567 1178 45 8 1 1163 500866199 500867372 0.000000e+00 1803.0
3 TraesCS5A01G444800 chr5D 84.729 406 47 10 3569 3969 19507937 19508332 3.720000e-105 392.0
4 TraesCS5A01G444800 chr5B 97.072 1810 48 4 1183 2990 622397635 622399441 0.000000e+00 3044.0
5 TraesCS5A01G444800 chr5B 93.499 1169 61 9 1 1159 622396483 622397646 0.000000e+00 1724.0
6 TraesCS5A01G444800 chr5B 86.902 397 43 6 3580 3969 374449705 374450099 1.690000e-118 436.0
7 TraesCS5A01G444800 chr5B 89.189 74 7 1 3506 3578 670593370 670593297 1.520000e-14 91.6
8 TraesCS5A01G444800 chr2A 91.652 575 36 4 2997 3569 694729812 694729248 0.000000e+00 785.0
9 TraesCS5A01G444800 chr2A 92.208 77 6 0 3503 3579 771163717 771163793 4.190000e-20 110.0
10 TraesCS5A01G444800 chr4A 94.545 495 21 3 2997 3488 563308502 563308993 0.000000e+00 760.0
11 TraesCS5A01G444800 chr4A 94.958 476 22 1 2997 3470 563272998 563273473 0.000000e+00 745.0
12 TraesCS5A01G444800 chr4A 96.721 61 2 0 3475 3535 563309008 563309068 7.020000e-18 102.0
13 TraesCS5A01G444800 chr2D 92.328 378 22 3 3197 3569 372506953 372507328 7.550000e-147 531.0
14 TraesCS5A01G444800 chr2D 90.777 206 15 2 2997 3198 372504036 372504241 5.050000e-69 272.0
15 TraesCS5A01G444800 chr1D 88.071 394 43 3 3580 3969 236265902 236266295 7.770000e-127 464.0
16 TraesCS5A01G444800 chr1D 95.775 71 3 0 3506 3576 435161645 435161715 9.010000e-22 115.0
17 TraesCS5A01G444800 chr1D 87.129 101 10 2 3456 3553 436454507 436454407 1.170000e-20 111.0
18 TraesCS5A01G444800 chr7B 86.410 390 47 5 3582 3966 449033002 449033390 4.740000e-114 422.0
19 TraesCS5A01G444800 chr3A 86.041 394 51 3 3580 3969 164401686 164401293 1.710000e-113 420.0
20 TraesCS5A01G444800 chr3A 92.308 39 2 1 3450 3487 353166339 353166377 2.000000e-03 54.7
21 TraesCS5A01G444800 chr1A 85.075 402 50 9 3574 3969 135817481 135817878 6.180000e-108 401.0
22 TraesCS5A01G444800 chrUn 85.422 391 50 6 3580 3965 46265376 46265764 2.220000e-107 399.0
23 TraesCS5A01G444800 chr2B 85.025 394 52 6 3580 3969 396638755 396639145 1.030000e-105 394.0
24 TraesCS5A01G444800 chr2B 90.291 103 4 2 3506 3608 258679040 258678944 3.220000e-26 130.0
25 TraesCS5A01G444800 chr2B 89.474 76 8 0 3503 3578 3611961 3612036 3.260000e-16 97.1
26 TraesCS5A01G444800 chr3D 84.848 396 51 8 3580 3969 543115565 543115173 1.340000e-104 390.0
27 TraesCS5A01G444800 chr4D 95.082 61 1 1 3508 3566 418421932 418421992 1.170000e-15 95.3
28 TraesCS5A01G444800 chr6B 89.231 65 3 2 3506 3570 221411513 221411573 1.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G444800 chr5A 624732683 624736651 3968 True 7330.0 7330 100.0000 1 3969 1 chr5A.!!$R1 3968
1 TraesCS5A01G444800 chr5D 500866199 500869166 2967 False 2445.5 3088 95.9900 1 2999 2 chr5D.!!$F2 2998
2 TraesCS5A01G444800 chr5B 622396483 622399441 2958 False 2384.0 3044 95.2855 1 2990 2 chr5B.!!$F2 2989
3 TraesCS5A01G444800 chr2A 694729248 694729812 564 True 785.0 785 91.6520 2997 3569 1 chr2A.!!$R1 572
4 TraesCS5A01G444800 chr4A 563308502 563309068 566 False 431.0 760 95.6330 2997 3535 2 chr4A.!!$F2 538
5 TraesCS5A01G444800 chr2D 372504036 372507328 3292 False 401.5 531 91.5525 2997 3569 2 chr2D.!!$F1 572


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 735 0.885196 GCAGAAGACCAGACTCGTCT 59.115 55.000 0.0 0.0 42.41 4.18 F
1935 1956 1.126113 GTTTGCGACACATAGGACACG 59.874 52.381 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2077 0.607620 ACCCGACCCAAATTGCATTG 59.392 50.0 0.00 0.00 0.00 2.82 R
3666 6437 0.032403 ATGCTGCGTTGCAACATGTT 59.968 45.0 28.01 4.92 42.61 2.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.335426 GGGACTCGTATATATTCGTCTGCAA 60.335 44.000 10.94 0.00 0.00 4.08
186 187 2.944129 ACTGACAAAGCTTTGGCCTTA 58.056 42.857 36.11 20.58 45.65 2.69
187 188 3.500343 ACTGACAAAGCTTTGGCCTTAT 58.500 40.909 36.11 19.29 45.65 1.73
311 315 6.282167 AATGTGCACATTTGTGAAGATTTGA 58.718 32.000 34.07 1.51 42.82 2.69
371 375 8.955061 AGAAAATGATCAACATAAACAACTCG 57.045 30.769 0.00 0.00 38.38 4.18
563 573 8.845227 TGTGTACATATTTGTGAAGATTTGTGT 58.155 29.630 0.00 0.00 36.53 3.72
647 657 9.677567 GATTTTCAAAATTGTACTAAGACAGCA 57.322 29.630 0.00 0.00 0.00 4.41
663 673 6.017400 AGACAGCAACAGTTAATTTGGATG 57.983 37.500 0.00 0.00 0.00 3.51
682 692 4.141688 GGATGGGAGAGGATACGTTCTTTT 60.142 45.833 0.00 0.00 46.39 2.27
691 701 9.628746 GAGAGGATACGTTCTTTTATATCTTCC 57.371 37.037 0.00 0.00 46.39 3.46
705 715 8.463930 TTTATATCTTCCGAAATGAATGGCTT 57.536 30.769 0.00 0.00 0.00 4.35
725 735 0.885196 GCAGAAGACCAGACTCGTCT 59.115 55.000 0.00 0.00 42.41 4.18
777 787 5.183140 CCTTTGTTGTTATTTGATCTCCGGT 59.817 40.000 0.00 0.00 0.00 5.28
938 952 5.094387 AGATTTGGAACTCACTCTTCCCTA 58.906 41.667 0.00 0.00 37.03 3.53
944 958 7.324388 TGGAACTCACTCTTCCCTAATAAAA 57.676 36.000 0.00 0.00 37.03 1.52
945 959 7.166167 TGGAACTCACTCTTCCCTAATAAAAC 58.834 38.462 0.00 0.00 37.03 2.43
946 960 7.017254 TGGAACTCACTCTTCCCTAATAAAACT 59.983 37.037 0.00 0.00 37.03 2.66
1094 1113 3.719699 GATTGCATCCAACCAACCG 57.280 52.632 0.00 0.00 32.95 4.44
1189 1208 4.954933 CGAAACGGATGGGGTGAT 57.045 55.556 0.00 0.00 0.00 3.06
1194 1213 3.006537 CGAAACGGATGGGGTGATATAGT 59.993 47.826 0.00 0.00 0.00 2.12
1370 1389 9.556030 GGTTATTCGAACTGGATTTTCTTTTAG 57.444 33.333 0.00 0.00 0.00 1.85
1935 1956 1.126113 GTTTGCGACACATAGGACACG 59.874 52.381 0.00 0.00 0.00 4.49
1948 1969 1.400737 GGACACGTCCCAGTAGCTAT 58.599 55.000 4.78 0.00 43.94 2.97
2054 2075 3.432890 GGAGGGTGATCCAAAGACAGATC 60.433 52.174 0.00 0.00 39.34 2.75
2276 2297 4.518970 GGTATGTTTCTGCCTTTTCACTCA 59.481 41.667 0.00 0.00 0.00 3.41
2277 2298 5.009610 GGTATGTTTCTGCCTTTTCACTCAA 59.990 40.000 0.00 0.00 0.00 3.02
2398 2419 1.152830 GGACTGCCCTGGTTTCCAA 59.847 57.895 0.00 0.00 30.80 3.53
2425 2446 0.404040 AGGGGTCAAAAATCGCTCCA 59.596 50.000 0.00 0.00 0.00 3.86
2465 2486 5.396101 CCAGTCTCTCATGTTCATGGTGTAT 60.396 44.000 12.02 0.00 0.00 2.29
2638 2659 2.595750 AATCCACGGGAAATTGGTGA 57.404 45.000 0.00 0.00 34.34 4.02
2642 2663 4.035612 TCCACGGGAAATTGGTGAATAA 57.964 40.909 0.00 0.00 34.19 1.40
2648 2669 6.005198 ACGGGAAATTGGTGAATAAACTACA 58.995 36.000 0.00 0.00 0.00 2.74
2671 2692 1.760086 CAACAAGGCCCCAACACCA 60.760 57.895 0.00 0.00 0.00 4.17
2709 2730 7.346695 CCAGCAAAATTGTTTGACAAGTTATG 58.653 34.615 6.89 8.50 44.32 1.90
2716 2737 9.883142 AAATTGTTTGACAAGTTATGGAAGAAA 57.117 25.926 4.88 0.00 43.44 2.52
3094 3115 8.731275 TTAATTTATCCACATCGTGAGTCAAT 57.269 30.769 0.00 0.00 35.23 2.57
3193 3220 6.855763 TCCTAACTCCTTTAATAACGTCCA 57.144 37.500 0.00 0.00 0.00 4.02
3248 5988 3.008266 CCGTTTAGTTTACCCTTCCCTCA 59.992 47.826 0.00 0.00 0.00 3.86
3294 6034 7.447545 ACATTAGTACATTGGAGATCGCTAGTA 59.552 37.037 0.00 0.00 0.00 1.82
3348 6092 4.008933 GGACTGCAGTCAGCCCGT 62.009 66.667 39.71 9.98 46.47 5.28
3399 6143 6.763715 ACTAAGATATAAGATGGGCCACAA 57.236 37.500 9.28 0.00 0.00 3.33
3408 6152 0.539438 ATGGGCCACAACGACACAAT 60.539 50.000 9.28 0.00 0.00 2.71
3535 6305 7.495135 AAACCAAAAATATCACCTTGCTTTG 57.505 32.000 0.00 0.00 0.00 2.77
3592 6363 9.944663 GATATAGATATAGACTAGCACACAAGC 57.055 37.037 0.00 0.00 0.00 4.01
3593 6364 5.461032 AGATATAGACTAGCACACAAGCC 57.539 43.478 0.00 0.00 34.23 4.35
3594 6365 2.990066 ATAGACTAGCACACAAGCCC 57.010 50.000 0.00 0.00 34.23 5.19
3595 6366 0.530744 TAGACTAGCACACAAGCCCG 59.469 55.000 0.00 0.00 34.23 6.13
3596 6367 1.004918 GACTAGCACACAAGCCCGT 60.005 57.895 0.00 0.00 34.23 5.28
3597 6368 1.291877 GACTAGCACACAAGCCCGTG 61.292 60.000 1.69 1.69 42.81 4.94
3601 6372 3.582120 CACACAAGCCCGTGCGTT 61.582 61.111 3.11 0.00 44.33 4.84
3602 6373 3.582120 ACACAAGCCCGTGCGTTG 61.582 61.111 3.11 1.80 44.33 4.10
3603 6374 4.980903 CACAAGCCCGTGCGTTGC 62.981 66.667 2.95 0.00 44.33 4.17
3605 6376 4.263209 CAAGCCCGTGCGTTGCAA 62.263 61.111 0.00 0.00 41.47 4.08
3606 6377 4.264638 AAGCCCGTGCGTTGCAAC 62.265 61.111 19.89 19.89 41.47 4.17
3633 6404 5.814764 AAAATTGATGTTTTGTGCAAGCA 57.185 30.435 0.00 0.00 30.55 3.91
3634 6405 6.380095 AAAATTGATGTTTTGTGCAAGCAT 57.620 29.167 0.00 0.00 30.55 3.79
3635 6406 7.493743 AAAATTGATGTTTTGTGCAAGCATA 57.506 28.000 0.00 0.00 30.55 3.14
3636 6407 7.493743 AAATTGATGTTTTGTGCAAGCATAA 57.506 28.000 0.00 0.00 0.00 1.90
3637 6408 7.675962 AATTGATGTTTTGTGCAAGCATAAT 57.324 28.000 5.08 0.00 0.00 1.28
3638 6409 6.469139 TTGATGTTTTGTGCAAGCATAATG 57.531 33.333 5.08 0.00 0.00 1.90
3639 6410 5.539979 TGATGTTTTGTGCAAGCATAATGT 58.460 33.333 5.08 0.00 0.00 2.71
3640 6411 5.990386 TGATGTTTTGTGCAAGCATAATGTT 59.010 32.000 5.08 0.00 0.00 2.71
3641 6412 5.903764 TGTTTTGTGCAAGCATAATGTTC 57.096 34.783 5.08 0.00 0.00 3.18
3642 6413 4.749099 TGTTTTGTGCAAGCATAATGTTCC 59.251 37.500 5.08 0.00 0.00 3.62
3643 6414 4.597404 TTTGTGCAAGCATAATGTTCCA 57.403 36.364 5.08 0.00 0.00 3.53
3644 6415 4.804868 TTGTGCAAGCATAATGTTCCAT 57.195 36.364 0.00 0.00 0.00 3.41
3645 6416 5.911378 TTGTGCAAGCATAATGTTCCATA 57.089 34.783 0.00 0.00 0.00 2.74
3646 6417 5.503662 TGTGCAAGCATAATGTTCCATAG 57.496 39.130 0.00 0.00 0.00 2.23
3647 6418 4.202040 TGTGCAAGCATAATGTTCCATAGC 60.202 41.667 0.00 0.00 0.00 2.97
3648 6419 3.952967 TGCAAGCATAATGTTCCATAGCA 59.047 39.130 0.00 0.00 0.00 3.49
3649 6420 4.202040 TGCAAGCATAATGTTCCATAGCAC 60.202 41.667 0.00 0.00 0.00 4.40
3650 6421 4.794003 GCAAGCATAATGTTCCATAGCACC 60.794 45.833 0.00 0.00 0.00 5.01
3651 6422 4.169059 AGCATAATGTTCCATAGCACCA 57.831 40.909 0.00 0.00 0.00 4.17
3652 6423 4.139786 AGCATAATGTTCCATAGCACCAG 58.860 43.478 0.00 0.00 0.00 4.00
3653 6424 4.136796 GCATAATGTTCCATAGCACCAGA 58.863 43.478 0.00 0.00 0.00 3.86
3654 6425 4.763793 GCATAATGTTCCATAGCACCAGAT 59.236 41.667 0.00 0.00 0.00 2.90
3655 6426 5.242393 GCATAATGTTCCATAGCACCAGATT 59.758 40.000 0.00 0.00 0.00 2.40
3656 6427 6.569226 GCATAATGTTCCATAGCACCAGATTC 60.569 42.308 0.00 0.00 0.00 2.52
3657 6428 3.998913 TGTTCCATAGCACCAGATTCA 57.001 42.857 0.00 0.00 0.00 2.57
3658 6429 3.609853 TGTTCCATAGCACCAGATTCAC 58.390 45.455 0.00 0.00 0.00 3.18
3659 6430 3.264193 TGTTCCATAGCACCAGATTCACT 59.736 43.478 0.00 0.00 0.00 3.41
3660 6431 4.469586 TGTTCCATAGCACCAGATTCACTA 59.530 41.667 0.00 0.00 0.00 2.74
3661 6432 5.130975 TGTTCCATAGCACCAGATTCACTAT 59.869 40.000 0.00 0.00 0.00 2.12
3662 6433 5.219343 TCCATAGCACCAGATTCACTATG 57.781 43.478 0.00 0.00 39.79 2.23
3663 6434 4.901250 TCCATAGCACCAGATTCACTATGA 59.099 41.667 9.33 0.00 41.67 2.15
3664 6435 5.366477 TCCATAGCACCAGATTCACTATGAA 59.634 40.000 9.33 0.00 41.67 2.57
3665 6436 5.699915 CCATAGCACCAGATTCACTATGAAG 59.300 44.000 9.33 0.00 41.67 3.02
3666 6437 6.463472 CCATAGCACCAGATTCACTATGAAGA 60.463 42.308 9.33 0.00 41.67 2.87
3667 6438 5.426689 AGCACCAGATTCACTATGAAGAA 57.573 39.130 0.00 0.00 40.05 2.52
3668 6439 5.181748 AGCACCAGATTCACTATGAAGAAC 58.818 41.667 0.00 0.00 40.05 3.01
3669 6440 4.937620 GCACCAGATTCACTATGAAGAACA 59.062 41.667 0.00 0.00 40.05 3.18
3670 6441 5.587844 GCACCAGATTCACTATGAAGAACAT 59.412 40.000 0.00 0.00 40.05 2.71
3671 6442 6.457934 GCACCAGATTCACTATGAAGAACATG 60.458 42.308 0.00 0.00 40.05 3.21
3672 6443 6.596888 CACCAGATTCACTATGAAGAACATGT 59.403 38.462 0.00 0.00 40.05 3.21
3673 6444 7.120285 CACCAGATTCACTATGAAGAACATGTT 59.880 37.037 11.78 11.78 40.05 2.71
3674 6445 7.120285 ACCAGATTCACTATGAAGAACATGTTG 59.880 37.037 17.58 1.77 40.05 3.33
3675 6446 6.965500 CAGATTCACTATGAAGAACATGTTGC 59.035 38.462 17.58 7.82 40.05 4.17
3676 6447 6.656270 AGATTCACTATGAAGAACATGTTGCA 59.344 34.615 17.58 11.50 40.05 4.08
3677 6448 6.631971 TTCACTATGAAGAACATGTTGCAA 57.368 33.333 17.58 0.00 39.77 4.08
3678 6449 6.000891 TCACTATGAAGAACATGTTGCAAC 57.999 37.500 22.83 22.83 39.77 4.17
3679 6450 4.847757 CACTATGAAGAACATGTTGCAACG 59.152 41.667 23.79 13.41 39.77 4.10
3680 6451 2.118228 TGAAGAACATGTTGCAACGC 57.882 45.000 23.79 10.83 0.00 4.84
3681 6452 1.403323 TGAAGAACATGTTGCAACGCA 59.597 42.857 23.79 8.67 36.47 5.24
3682 6453 2.046313 GAAGAACATGTTGCAACGCAG 58.954 47.619 23.79 17.55 40.61 5.18
3683 6454 0.318107 AGAACATGTTGCAACGCAGC 60.318 50.000 23.79 12.16 40.61 5.25
3687 6458 2.644418 TGTTGCAACGCAGCATCC 59.356 55.556 23.79 0.00 44.16 3.51
3688 6459 1.898094 TGTTGCAACGCAGCATCCT 60.898 52.632 23.79 0.00 44.16 3.24
3689 6460 1.286880 GTTGCAACGCAGCATCCTT 59.713 52.632 14.90 0.00 45.19 3.36
3690 6461 0.730494 GTTGCAACGCAGCATCCTTC 60.730 55.000 14.90 0.00 45.19 3.46
3691 6462 0.890542 TTGCAACGCAGCATCCTTCT 60.891 50.000 0.00 0.00 45.19 2.85
3692 6463 0.036483 TGCAACGCAGCATCCTTCTA 60.036 50.000 0.00 0.00 40.11 2.10
3693 6464 0.375106 GCAACGCAGCATCCTTCTAC 59.625 55.000 0.00 0.00 0.00 2.59
3694 6465 1.725641 CAACGCAGCATCCTTCTACA 58.274 50.000 0.00 0.00 0.00 2.74
3695 6466 2.076100 CAACGCAGCATCCTTCTACAA 58.924 47.619 0.00 0.00 0.00 2.41
3696 6467 2.472695 ACGCAGCATCCTTCTACAAA 57.527 45.000 0.00 0.00 0.00 2.83
3697 6468 2.778299 ACGCAGCATCCTTCTACAAAA 58.222 42.857 0.00 0.00 0.00 2.44
3698 6469 3.347216 ACGCAGCATCCTTCTACAAAAT 58.653 40.909 0.00 0.00 0.00 1.82
3699 6470 3.127548 ACGCAGCATCCTTCTACAAAATG 59.872 43.478 0.00 0.00 0.00 2.32
3700 6471 3.374988 CGCAGCATCCTTCTACAAAATGA 59.625 43.478 0.00 0.00 0.00 2.57
3701 6472 4.142622 CGCAGCATCCTTCTACAAAATGAA 60.143 41.667 0.00 0.00 0.00 2.57
3702 6473 5.098211 GCAGCATCCTTCTACAAAATGAAC 58.902 41.667 0.00 0.00 0.00 3.18
3703 6474 5.335897 GCAGCATCCTTCTACAAAATGAACA 60.336 40.000 0.00 0.00 0.00 3.18
3704 6475 6.626623 GCAGCATCCTTCTACAAAATGAACAT 60.627 38.462 0.00 0.00 0.00 2.71
3705 6476 7.415541 GCAGCATCCTTCTACAAAATGAACATA 60.416 37.037 0.00 0.00 0.00 2.29
3706 6477 8.461222 CAGCATCCTTCTACAAAATGAACATAA 58.539 33.333 0.00 0.00 0.00 1.90
3707 6478 9.023962 AGCATCCTTCTACAAAATGAACATAAA 57.976 29.630 0.00 0.00 0.00 1.40
3708 6479 9.638239 GCATCCTTCTACAAAATGAACATAAAA 57.362 29.630 0.00 0.00 0.00 1.52
3733 6504 8.920509 AAAATACGATGCATTTTACCCTTTAC 57.079 30.769 0.00 0.00 34.61 2.01
3734 6505 7.633193 AATACGATGCATTTTACCCTTTACA 57.367 32.000 0.00 0.00 0.00 2.41
3735 6506 7.817418 ATACGATGCATTTTACCCTTTACAT 57.183 32.000 0.00 0.00 0.00 2.29
3736 6507 8.911918 ATACGATGCATTTTACCCTTTACATA 57.088 30.769 0.00 0.00 0.00 2.29
3737 6508 7.817418 ACGATGCATTTTACCCTTTACATAT 57.183 32.000 0.00 0.00 0.00 1.78
3738 6509 8.232913 ACGATGCATTTTACCCTTTACATATT 57.767 30.769 0.00 0.00 0.00 1.28
3739 6510 8.691797 ACGATGCATTTTACCCTTTACATATTT 58.308 29.630 0.00 0.00 0.00 1.40
3740 6511 9.528018 CGATGCATTTTACCCTTTACATATTTT 57.472 29.630 0.00 0.00 0.00 1.82
3748 6519 8.712285 TTACCCTTTACATATTTTCTCTGTCG 57.288 34.615 0.00 0.00 0.00 4.35
3749 6520 6.942976 ACCCTTTACATATTTTCTCTGTCGA 58.057 36.000 0.00 0.00 0.00 4.20
3750 6521 7.042335 ACCCTTTACATATTTTCTCTGTCGAG 58.958 38.462 0.00 0.00 38.67 4.04
3751 6522 6.018669 CCCTTTACATATTTTCTCTGTCGAGC 60.019 42.308 0.00 0.00 37.19 5.03
3752 6523 6.535150 CCTTTACATATTTTCTCTGTCGAGCA 59.465 38.462 0.00 0.00 37.19 4.26
3753 6524 7.225538 CCTTTACATATTTTCTCTGTCGAGCAT 59.774 37.037 0.00 0.00 37.19 3.79
3754 6525 9.249457 CTTTACATATTTTCTCTGTCGAGCATA 57.751 33.333 0.00 0.00 37.19 3.14
3755 6526 9.594478 TTTACATATTTTCTCTGTCGAGCATAA 57.406 29.630 0.00 0.00 37.19 1.90
3756 6527 9.764363 TTACATATTTTCTCTGTCGAGCATAAT 57.236 29.630 0.00 0.00 37.19 1.28
3757 6528 8.304202 ACATATTTTCTCTGTCGAGCATAATC 57.696 34.615 0.00 0.00 37.19 1.75
3758 6529 8.147058 ACATATTTTCTCTGTCGAGCATAATCT 58.853 33.333 0.00 0.00 37.19 2.40
3759 6530 8.646356 CATATTTTCTCTGTCGAGCATAATCTC 58.354 37.037 0.00 0.00 37.19 2.75
3771 6542 6.530913 GAGCATAATCTCGCACTAATTTCA 57.469 37.500 0.00 0.00 0.00 2.69
3772 6543 7.126726 GAGCATAATCTCGCACTAATTTCAT 57.873 36.000 0.00 0.00 0.00 2.57
3773 6544 7.502120 AGCATAATCTCGCACTAATTTCATT 57.498 32.000 0.00 0.00 0.00 2.57
3774 6545 7.934457 AGCATAATCTCGCACTAATTTCATTT 58.066 30.769 0.00 0.00 0.00 2.32
3775 6546 9.056005 AGCATAATCTCGCACTAATTTCATTTA 57.944 29.630 0.00 0.00 0.00 1.40
3776 6547 9.663904 GCATAATCTCGCACTAATTTCATTTAA 57.336 29.630 0.00 0.00 0.00 1.52
3782 6553 9.594478 TCTCGCACTAATTTCATTTAAGTATCA 57.406 29.630 0.00 0.00 0.00 2.15
3785 6556 8.895845 CGCACTAATTTCATTTAAGTATCATGC 58.104 33.333 0.00 0.00 0.00 4.06
3786 6557 9.956720 GCACTAATTTCATTTAAGTATCATGCT 57.043 29.630 0.00 0.00 0.00 3.79
3801 6572 9.646522 AAGTATCATGCTTCCTTTAATTACCAT 57.353 29.630 0.00 0.00 0.00 3.55
3802 6573 9.071276 AGTATCATGCTTCCTTTAATTACCATG 57.929 33.333 0.00 0.00 0.00 3.66
3803 6574 9.066892 GTATCATGCTTCCTTTAATTACCATGA 57.933 33.333 0.00 0.00 41.11 3.07
3804 6575 7.333528 TCATGCTTCCTTTAATTACCATGAC 57.666 36.000 0.00 0.00 34.60 3.06
3805 6576 5.811399 TGCTTCCTTTAATTACCATGACG 57.189 39.130 0.00 0.00 0.00 4.35
3806 6577 5.250200 TGCTTCCTTTAATTACCATGACGT 58.750 37.500 0.00 0.00 0.00 4.34
3807 6578 5.353123 TGCTTCCTTTAATTACCATGACGTC 59.647 40.000 9.11 9.11 0.00 4.34
3808 6579 5.220796 GCTTCCTTTAATTACCATGACGTCC 60.221 44.000 14.12 0.00 0.00 4.79
3809 6580 5.687166 TCCTTTAATTACCATGACGTCCT 57.313 39.130 14.12 0.00 0.00 3.85
3810 6581 5.667466 TCCTTTAATTACCATGACGTCCTC 58.333 41.667 14.12 0.00 0.00 3.71
3811 6582 5.188163 TCCTTTAATTACCATGACGTCCTCA 59.812 40.000 14.12 0.00 0.00 3.86
3812 6583 5.293569 CCTTTAATTACCATGACGTCCTCAC 59.706 44.000 14.12 0.00 0.00 3.51
3813 6584 2.981859 ATTACCATGACGTCCTCACC 57.018 50.000 14.12 0.00 0.00 4.02
3814 6585 0.899720 TTACCATGACGTCCTCACCC 59.100 55.000 14.12 0.00 0.00 4.61
3815 6586 0.974010 TACCATGACGTCCTCACCCC 60.974 60.000 14.12 0.00 0.00 4.95
3816 6587 1.990060 CCATGACGTCCTCACCCCT 60.990 63.158 14.12 0.00 0.00 4.79
3817 6588 1.553690 CCATGACGTCCTCACCCCTT 61.554 60.000 14.12 0.00 0.00 3.95
3818 6589 0.324943 CATGACGTCCTCACCCCTTT 59.675 55.000 14.12 0.00 0.00 3.11
3819 6590 1.064825 ATGACGTCCTCACCCCTTTT 58.935 50.000 14.12 0.00 0.00 2.27
3820 6591 1.719529 TGACGTCCTCACCCCTTTTA 58.280 50.000 14.12 0.00 0.00 1.52
3821 6592 1.621814 TGACGTCCTCACCCCTTTTAG 59.378 52.381 14.12 0.00 0.00 1.85
3822 6593 1.622312 GACGTCCTCACCCCTTTTAGT 59.378 52.381 3.51 0.00 0.00 2.24
3823 6594 1.622312 ACGTCCTCACCCCTTTTAGTC 59.378 52.381 0.00 0.00 0.00 2.59
3824 6595 1.403780 CGTCCTCACCCCTTTTAGTCG 60.404 57.143 0.00 0.00 0.00 4.18
3825 6596 1.066358 GTCCTCACCCCTTTTAGTCGG 60.066 57.143 0.00 0.00 0.00 4.79
3826 6597 0.252197 CCTCACCCCTTTTAGTCGGG 59.748 60.000 0.00 0.00 43.05 5.14
3827 6598 1.272807 CTCACCCCTTTTAGTCGGGA 58.727 55.000 0.00 0.00 43.44 5.14
3828 6599 1.626825 CTCACCCCTTTTAGTCGGGAA 59.373 52.381 0.00 0.00 43.44 3.97
3829 6600 2.238898 CTCACCCCTTTTAGTCGGGAAT 59.761 50.000 0.00 0.00 43.44 3.01
3830 6601 2.237893 TCACCCCTTTTAGTCGGGAATC 59.762 50.000 0.00 0.00 43.44 2.52
3831 6602 2.026636 CACCCCTTTTAGTCGGGAATCA 60.027 50.000 0.00 0.00 43.44 2.57
3832 6603 2.645797 ACCCCTTTTAGTCGGGAATCAA 59.354 45.455 0.00 0.00 43.44 2.57
3833 6604 3.074836 ACCCCTTTTAGTCGGGAATCAAA 59.925 43.478 0.00 0.00 43.44 2.69
3834 6605 4.264217 ACCCCTTTTAGTCGGGAATCAAAT 60.264 41.667 0.00 0.00 43.44 2.32
3835 6606 4.338400 CCCCTTTTAGTCGGGAATCAAATC 59.662 45.833 0.00 0.00 43.44 2.17
3836 6607 5.193679 CCCTTTTAGTCGGGAATCAAATCT 58.806 41.667 0.00 0.00 43.44 2.40
3837 6608 5.652452 CCCTTTTAGTCGGGAATCAAATCTT 59.348 40.000 0.00 0.00 43.44 2.40
3838 6609 6.152831 CCCTTTTAGTCGGGAATCAAATCTTT 59.847 38.462 0.00 0.00 43.44 2.52
3839 6610 7.251281 CCTTTTAGTCGGGAATCAAATCTTTC 58.749 38.462 0.00 0.00 0.00 2.62
3840 6611 7.121315 CCTTTTAGTCGGGAATCAAATCTTTCT 59.879 37.037 0.00 0.00 0.00 2.52
3841 6612 7.996098 TTTAGTCGGGAATCAAATCTTTCTT 57.004 32.000 0.00 0.00 0.00 2.52
3842 6613 7.996098 TTAGTCGGGAATCAAATCTTTCTTT 57.004 32.000 0.00 0.00 0.00 2.52
3843 6614 6.901081 AGTCGGGAATCAAATCTTTCTTTT 57.099 33.333 0.00 0.00 0.00 2.27
3844 6615 7.290110 AGTCGGGAATCAAATCTTTCTTTTT 57.710 32.000 0.00 0.00 0.00 1.94
3845 6616 7.371159 AGTCGGGAATCAAATCTTTCTTTTTC 58.629 34.615 0.00 0.00 0.00 2.29
3846 6617 7.231519 AGTCGGGAATCAAATCTTTCTTTTTCT 59.768 33.333 0.00 0.00 0.00 2.52
3847 6618 8.512138 GTCGGGAATCAAATCTTTCTTTTTCTA 58.488 33.333 0.00 0.00 0.00 2.10
3848 6619 9.073475 TCGGGAATCAAATCTTTCTTTTTCTAA 57.927 29.630 0.00 0.00 0.00 2.10
3849 6620 9.860898 CGGGAATCAAATCTTTCTTTTTCTAAT 57.139 29.630 0.00 0.00 0.00 1.73
3860 6631 9.802039 TCTTTCTTTTTCTAATTTAGTAGCCCA 57.198 29.630 3.45 0.00 0.00 5.36
3863 6634 8.927675 TCTTTTTCTAATTTAGTAGCCCAACA 57.072 30.769 3.45 0.00 0.00 3.33
3864 6635 8.789762 TCTTTTTCTAATTTAGTAGCCCAACAC 58.210 33.333 3.45 0.00 0.00 3.32
3865 6636 8.466617 TTTTTCTAATTTAGTAGCCCAACACA 57.533 30.769 3.45 0.00 0.00 3.72
3866 6637 8.644374 TTTTCTAATTTAGTAGCCCAACACAT 57.356 30.769 3.45 0.00 0.00 3.21
3867 6638 8.644374 TTTCTAATTTAGTAGCCCAACACATT 57.356 30.769 3.45 0.00 0.00 2.71
3868 6639 7.624360 TCTAATTTAGTAGCCCAACACATTG 57.376 36.000 3.45 0.00 35.40 2.82
3869 6640 7.398829 TCTAATTTAGTAGCCCAACACATTGA 58.601 34.615 3.45 0.00 38.15 2.57
3870 6641 6.909550 AATTTAGTAGCCCAACACATTGAA 57.090 33.333 0.00 0.00 38.15 2.69
3871 6642 6.909550 ATTTAGTAGCCCAACACATTGAAA 57.090 33.333 0.00 0.00 38.15 2.69
3872 6643 5.699097 TTAGTAGCCCAACACATTGAAAC 57.301 39.130 0.00 0.00 38.15 2.78
3873 6644 2.890945 AGTAGCCCAACACATTGAAACC 59.109 45.455 0.00 0.00 38.15 3.27
3874 6645 0.673437 AGCCCAACACATTGAAACCG 59.327 50.000 0.00 0.00 38.15 4.44
3875 6646 0.671251 GCCCAACACATTGAAACCGA 59.329 50.000 0.00 0.00 38.15 4.69
3876 6647 1.601914 GCCCAACACATTGAAACCGAC 60.602 52.381 0.00 0.00 38.15 4.79
3877 6648 1.678627 CCCAACACATTGAAACCGACA 59.321 47.619 0.00 0.00 38.15 4.35
3878 6649 2.295909 CCCAACACATTGAAACCGACAT 59.704 45.455 0.00 0.00 38.15 3.06
3879 6650 3.504134 CCCAACACATTGAAACCGACATA 59.496 43.478 0.00 0.00 38.15 2.29
3880 6651 4.157656 CCCAACACATTGAAACCGACATAT 59.842 41.667 0.00 0.00 38.15 1.78
3881 6652 5.331902 CCAACACATTGAAACCGACATATC 58.668 41.667 0.00 0.00 38.15 1.63
3882 6653 5.331902 CAACACATTGAAACCGACATATCC 58.668 41.667 0.00 0.00 38.15 2.59
3883 6654 4.843728 ACACATTGAAACCGACATATCCT 58.156 39.130 0.00 0.00 0.00 3.24
3884 6655 5.253330 ACACATTGAAACCGACATATCCTT 58.747 37.500 0.00 0.00 0.00 3.36
3885 6656 5.354234 ACACATTGAAACCGACATATCCTTC 59.646 40.000 0.00 0.00 0.00 3.46
3886 6657 5.586243 CACATTGAAACCGACATATCCTTCT 59.414 40.000 0.00 0.00 0.00 2.85
3887 6658 6.094048 CACATTGAAACCGACATATCCTTCTT 59.906 38.462 0.00 0.00 0.00 2.52
3888 6659 6.659242 ACATTGAAACCGACATATCCTTCTTT 59.341 34.615 0.00 0.00 0.00 2.52
3889 6660 6.737254 TTGAAACCGACATATCCTTCTTTC 57.263 37.500 0.00 0.00 0.00 2.62
3890 6661 6.049955 TGAAACCGACATATCCTTCTTTCT 57.950 37.500 0.00 0.00 0.00 2.52
3891 6662 7.177832 TGAAACCGACATATCCTTCTTTCTA 57.822 36.000 0.00 0.00 0.00 2.10
3892 6663 7.617225 TGAAACCGACATATCCTTCTTTCTAA 58.383 34.615 0.00 0.00 0.00 2.10
3893 6664 8.265055 TGAAACCGACATATCCTTCTTTCTAAT 58.735 33.333 0.00 0.00 0.00 1.73
3894 6665 9.110502 GAAACCGACATATCCTTCTTTCTAATT 57.889 33.333 0.00 0.00 0.00 1.40
3897 6668 9.930693 ACCGACATATCCTTCTTTCTAATTATC 57.069 33.333 0.00 0.00 0.00 1.75
3898 6669 9.929180 CCGACATATCCTTCTTTCTAATTATCA 57.071 33.333 0.00 0.00 0.00 2.15
3917 6688 9.547279 AATTATCACCTTTTTATCTCAAACCCT 57.453 29.630 0.00 0.00 0.00 4.34
3918 6689 8.950007 TTATCACCTTTTTATCTCAAACCCTT 57.050 30.769 0.00 0.00 0.00 3.95
3919 6690 6.894339 TCACCTTTTTATCTCAAACCCTTC 57.106 37.500 0.00 0.00 0.00 3.46
3920 6691 5.773176 TCACCTTTTTATCTCAAACCCTTCC 59.227 40.000 0.00 0.00 0.00 3.46
3921 6692 5.775195 CACCTTTTTATCTCAAACCCTTCCT 59.225 40.000 0.00 0.00 0.00 3.36
3922 6693 6.267699 CACCTTTTTATCTCAAACCCTTCCTT 59.732 38.462 0.00 0.00 0.00 3.36
3923 6694 6.844388 ACCTTTTTATCTCAAACCCTTCCTTT 59.156 34.615 0.00 0.00 0.00 3.11
3924 6695 8.008332 ACCTTTTTATCTCAAACCCTTCCTTTA 58.992 33.333 0.00 0.00 0.00 1.85
3925 6696 8.866093 CCTTTTTATCTCAAACCCTTCCTTTAA 58.134 33.333 0.00 0.00 0.00 1.52
3928 6699 9.594936 TTTTATCTCAAACCCTTCCTTTAATCA 57.405 29.630 0.00 0.00 0.00 2.57
3929 6700 8.807948 TTATCTCAAACCCTTCCTTTAATCAG 57.192 34.615 0.00 0.00 0.00 2.90
3930 6701 5.010282 TCTCAAACCCTTCCTTTAATCAGC 58.990 41.667 0.00 0.00 0.00 4.26
3931 6702 4.086457 TCAAACCCTTCCTTTAATCAGCC 58.914 43.478 0.00 0.00 0.00 4.85
3932 6703 4.089361 CAAACCCTTCCTTTAATCAGCCT 58.911 43.478 0.00 0.00 0.00 4.58
3933 6704 3.653835 ACCCTTCCTTTAATCAGCCTC 57.346 47.619 0.00 0.00 0.00 4.70
3934 6705 2.919602 ACCCTTCCTTTAATCAGCCTCA 59.080 45.455 0.00 0.00 0.00 3.86
3935 6706 3.529319 ACCCTTCCTTTAATCAGCCTCAT 59.471 43.478 0.00 0.00 0.00 2.90
3936 6707 4.140536 CCCTTCCTTTAATCAGCCTCATC 58.859 47.826 0.00 0.00 0.00 2.92
3937 6708 4.141298 CCCTTCCTTTAATCAGCCTCATCT 60.141 45.833 0.00 0.00 0.00 2.90
3938 6709 5.072329 CCCTTCCTTTAATCAGCCTCATCTA 59.928 44.000 0.00 0.00 0.00 1.98
3939 6710 6.240118 CCCTTCCTTTAATCAGCCTCATCTAT 60.240 42.308 0.00 0.00 0.00 1.98
3940 6711 7.230027 CCTTCCTTTAATCAGCCTCATCTATT 58.770 38.462 0.00 0.00 0.00 1.73
3941 6712 7.723172 CCTTCCTTTAATCAGCCTCATCTATTT 59.277 37.037 0.00 0.00 0.00 1.40
3942 6713 8.455903 TTCCTTTAATCAGCCTCATCTATTTG 57.544 34.615 0.00 0.00 0.00 2.32
3943 6714 7.805163 TCCTTTAATCAGCCTCATCTATTTGA 58.195 34.615 0.00 0.00 0.00 2.69
3944 6715 8.274322 TCCTTTAATCAGCCTCATCTATTTGAA 58.726 33.333 0.00 0.00 0.00 2.69
3945 6716 9.075678 CCTTTAATCAGCCTCATCTATTTGAAT 57.924 33.333 0.00 0.00 0.00 2.57
3946 6717 9.894783 CTTTAATCAGCCTCATCTATTTGAATG 57.105 33.333 0.00 0.00 0.00 2.67
3947 6718 8.985315 TTAATCAGCCTCATCTATTTGAATGT 57.015 30.769 0.00 0.00 0.00 2.71
3948 6719 7.893124 AATCAGCCTCATCTATTTGAATGTT 57.107 32.000 0.00 0.00 0.00 2.71
3949 6720 6.932356 TCAGCCTCATCTATTTGAATGTTC 57.068 37.500 0.00 0.00 0.00 3.18
3950 6721 6.656902 TCAGCCTCATCTATTTGAATGTTCT 58.343 36.000 0.00 0.00 0.00 3.01
3951 6722 7.795047 TCAGCCTCATCTATTTGAATGTTCTA 58.205 34.615 0.00 0.00 0.00 2.10
3952 6723 8.435187 TCAGCCTCATCTATTTGAATGTTCTAT 58.565 33.333 0.00 0.00 0.00 1.98
3953 6724 9.064706 CAGCCTCATCTATTTGAATGTTCTATT 57.935 33.333 0.00 0.00 0.00 1.73
3954 6725 9.638176 AGCCTCATCTATTTGAATGTTCTATTT 57.362 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 9.427821 AGAGAACAGTTAATGAGTCCATATAGT 57.572 33.333 0.00 0.00 31.59 2.12
158 159 4.576463 CCAAAGCTTTGTCAGTTACTCAGT 59.424 41.667 31.67 0.00 36.45 3.41
219 222 9.859152 TGGATATGGACAATGTGTAAATGATAA 57.141 29.630 0.00 0.00 0.00 1.75
221 224 8.945195 ATGGATATGGACAATGTGTAAATGAT 57.055 30.769 0.00 0.00 0.00 2.45
371 375 4.338379 AGAGCGGATATTTACAAGGGAC 57.662 45.455 0.00 0.00 0.00 4.46
563 573 2.170166 GGTTCCATGGAAGATGTGCAA 58.830 47.619 27.73 0.00 34.49 4.08
621 631 9.677567 TGCTGTCTTAGTACAATTTTGAAAATC 57.322 29.630 3.32 0.00 0.00 2.17
642 652 4.021192 CCCATCCAAATTAACTGTTGCTGT 60.021 41.667 2.69 0.00 0.00 4.40
647 657 5.015178 TCCTCTCCCATCCAAATTAACTGTT 59.985 40.000 0.00 0.00 0.00 3.16
663 673 8.124808 AGATATAAAAGAACGTATCCTCTCCC 57.875 38.462 0.00 0.00 0.00 4.30
682 692 6.072508 GCAAGCCATTCATTTCGGAAGATATA 60.073 38.462 0.00 0.00 41.60 0.86
691 701 2.925578 TCTGCAAGCCATTCATTTCG 57.074 45.000 0.00 0.00 0.00 3.46
705 715 0.598562 GACGAGTCTGGTCTTCTGCA 59.401 55.000 7.69 0.00 0.00 4.41
725 735 7.989416 AGTCCGGTCTAATGTAAATGAAAAA 57.011 32.000 0.00 0.00 0.00 1.94
817 827 9.632807 AAGTTAATAAATGCGAGCATTAAAACA 57.367 25.926 21.65 5.92 44.86 2.83
977 996 9.516546 ACATGATGAGATGCAAGATAATTACAT 57.483 29.630 0.00 0.00 0.00 2.29
985 1004 7.281098 AGTTTAGACATGATGAGATGCAAGAT 58.719 34.615 0.00 0.00 0.00 2.40
1034 1053 8.190122 GGTGAGCAATGAAAACAACATATATGA 58.810 33.333 19.63 0.00 0.00 2.15
1094 1113 4.888038 AGGAACAACACGTTTACCTTTC 57.112 40.909 0.00 0.00 38.19 2.62
1172 1191 2.543777 ATATCACCCCATCCGTTTCG 57.456 50.000 0.00 0.00 0.00 3.46
1173 1192 4.618920 ACTATATCACCCCATCCGTTTC 57.381 45.455 0.00 0.00 0.00 2.78
1174 1193 5.011738 CACTACTATATCACCCCATCCGTTT 59.988 44.000 0.00 0.00 0.00 3.60
1175 1194 4.527038 CACTACTATATCACCCCATCCGTT 59.473 45.833 0.00 0.00 0.00 4.44
1176 1195 4.087182 CACTACTATATCACCCCATCCGT 58.913 47.826 0.00 0.00 0.00 4.69
1177 1196 4.341487 TCACTACTATATCACCCCATCCG 58.659 47.826 0.00 0.00 0.00 4.18
1178 1197 6.681729 TTTCACTACTATATCACCCCATCC 57.318 41.667 0.00 0.00 0.00 3.51
1179 1198 9.877178 CTATTTTCACTACTATATCACCCCATC 57.123 37.037 0.00 0.00 0.00 3.51
1180 1199 9.615660 TCTATTTTCACTACTATATCACCCCAT 57.384 33.333 0.00 0.00 0.00 4.00
1181 1200 9.442062 TTCTATTTTCACTACTATATCACCCCA 57.558 33.333 0.00 0.00 0.00 4.96
1230 1249 8.644216 ACCTTCTTTTGGTACGGATTAATTTTT 58.356 29.630 0.00 0.00 35.80 1.94
1434 1453 2.282701 CCTTTGTGGCAATCAATCCG 57.717 50.000 0.00 0.00 0.00 4.18
1478 1497 4.060205 TCATGTACCATGCATCGAATCTG 58.940 43.478 0.00 0.00 0.00 2.90
1935 1956 5.542779 CAAGTCCATAATAGCTACTGGGAC 58.457 45.833 20.11 20.11 42.75 4.46
1940 1961 4.346418 AGCAGCAAGTCCATAATAGCTACT 59.654 41.667 0.00 0.00 0.00 2.57
1948 1969 3.947196 CCATTGTAGCAGCAAGTCCATAA 59.053 43.478 0.00 0.00 0.00 1.90
2054 2075 1.672441 CCCGACCCAAATTGCATTGTG 60.672 52.381 0.00 0.00 0.00 3.33
2056 2077 0.607620 ACCCGACCCAAATTGCATTG 59.392 50.000 0.00 0.00 0.00 2.82
2276 2297 6.770785 TGCTACAGTTGAGGAACATAGTTTTT 59.229 34.615 0.00 0.00 34.17 1.94
2277 2298 6.204882 GTGCTACAGTTGAGGAACATAGTTTT 59.795 38.462 0.00 0.00 34.17 2.43
2398 2419 4.261867 GCGATTTTTGACCCCTTAACAAGT 60.262 41.667 0.00 0.00 0.00 3.16
2425 2446 1.144913 ACTGGTTGTATTGTGCCACCT 59.855 47.619 0.00 0.00 0.00 4.00
2606 2627 1.818060 CGTGGATTTTTCCTGCCATGA 59.182 47.619 0.00 0.00 39.26 3.07
2638 2659 5.048013 GGCCTTGTTGAAGCTGTAGTTTATT 60.048 40.000 0.00 0.00 0.00 1.40
2642 2663 2.230660 GGCCTTGTTGAAGCTGTAGTT 58.769 47.619 0.00 0.00 0.00 2.24
2648 2669 1.115326 GTTGGGGCCTTGTTGAAGCT 61.115 55.000 0.84 0.00 0.00 3.74
2709 2730 3.005367 TGAAATTTGGGTCGCTTTCTTCC 59.995 43.478 0.00 0.00 0.00 3.46
2716 2737 2.632512 ACCAATTGAAATTTGGGTCGCT 59.367 40.909 7.12 0.00 0.00 4.93
2837 2858 0.842635 GTCATCCTGCCATCTTCCCT 59.157 55.000 0.00 0.00 0.00 4.20
3076 3097 4.437239 GAAGATTGACTCACGATGTGGAT 58.563 43.478 0.00 0.00 33.87 3.41
3077 3098 3.368427 GGAAGATTGACTCACGATGTGGA 60.368 47.826 0.00 0.00 33.87 4.02
3193 3220 3.430929 GGACGATGAAGGTTCTAGCACAT 60.431 47.826 0.00 0.00 0.00 3.21
3248 5988 3.133901 TGTACACGGCCATGTGAGATAAT 59.866 43.478 16.22 0.00 42.55 1.28
3328 6072 3.063526 GGCTGACTGCAGTCCAGA 58.936 61.111 37.23 21.95 44.64 3.86
3348 6092 1.669779 CGTTTAAAACACACACCCCGA 59.330 47.619 0.00 0.00 0.00 5.14
3399 6143 3.993382 ACAACCCGTATTGTGTCGT 57.007 47.368 1.05 0.00 41.29 4.34
3408 6152 2.256158 CGTCGAGCACAACCCGTA 59.744 61.111 0.00 0.00 0.00 4.02
3504 6274 4.218852 GGTGATATTTTTGGTTTCGTCCCA 59.781 41.667 0.00 0.00 0.00 4.37
3569 6340 6.153680 GGGCTTGTGTGCTAGTCTATATCTAT 59.846 42.308 0.00 0.00 0.00 1.98
3570 6341 5.477291 GGGCTTGTGTGCTAGTCTATATCTA 59.523 44.000 0.00 0.00 0.00 1.98
3571 6342 4.282195 GGGCTTGTGTGCTAGTCTATATCT 59.718 45.833 0.00 0.00 0.00 1.98
3572 6343 4.561105 GGGCTTGTGTGCTAGTCTATATC 58.439 47.826 0.00 0.00 0.00 1.63
3573 6344 3.005897 CGGGCTTGTGTGCTAGTCTATAT 59.994 47.826 0.00 0.00 0.00 0.86
3574 6345 2.361119 CGGGCTTGTGTGCTAGTCTATA 59.639 50.000 0.00 0.00 0.00 1.31
3575 6346 1.137086 CGGGCTTGTGTGCTAGTCTAT 59.863 52.381 0.00 0.00 0.00 1.98
3576 6347 0.530744 CGGGCTTGTGTGCTAGTCTA 59.469 55.000 0.00 0.00 0.00 2.59
3577 6348 1.293498 CGGGCTTGTGTGCTAGTCT 59.707 57.895 0.00 0.00 0.00 3.24
3578 6349 1.004918 ACGGGCTTGTGTGCTAGTC 60.005 57.895 0.00 0.00 0.00 2.59
3579 6350 1.301716 CACGGGCTTGTGTGCTAGT 60.302 57.895 0.00 0.00 35.12 2.57
3580 6351 3.566261 CACGGGCTTGTGTGCTAG 58.434 61.111 2.84 0.00 35.12 3.42
3585 6356 3.582120 CAACGCACGGGCTTGTGT 61.582 61.111 8.62 0.00 42.06 3.72
3586 6357 4.980903 GCAACGCACGGGCTTGTG 62.981 66.667 18.65 10.70 42.81 3.33
3588 6359 4.263209 TTGCAACGCACGGGCTTG 62.263 61.111 8.62 12.65 38.71 4.01
3589 6360 4.264638 GTTGCAACGCACGGGCTT 62.265 61.111 14.90 0.00 38.71 4.35
3610 6381 6.192234 TGCTTGCACAAAACATCAATTTTT 57.808 29.167 0.00 0.00 29.17 1.94
3611 6382 5.814764 TGCTTGCACAAAACATCAATTTT 57.185 30.435 0.00 0.00 31.87 1.82
3612 6383 7.493743 TTATGCTTGCACAAAACATCAATTT 57.506 28.000 0.00 0.00 0.00 1.82
3613 6384 7.173562 ACATTATGCTTGCACAAAACATCAATT 59.826 29.630 0.00 0.00 0.00 2.32
3614 6385 6.651643 ACATTATGCTTGCACAAAACATCAAT 59.348 30.769 0.00 1.30 0.00 2.57
3615 6386 5.990386 ACATTATGCTTGCACAAAACATCAA 59.010 32.000 0.00 0.00 0.00 2.57
3616 6387 5.539979 ACATTATGCTTGCACAAAACATCA 58.460 33.333 0.00 0.00 0.00 3.07
3617 6388 6.401367 GGAACATTATGCTTGCACAAAACATC 60.401 38.462 0.00 0.00 0.00 3.06
3618 6389 5.409214 GGAACATTATGCTTGCACAAAACAT 59.591 36.000 0.00 4.54 0.00 2.71
3619 6390 4.749099 GGAACATTATGCTTGCACAAAACA 59.251 37.500 0.00 0.00 0.00 2.83
3620 6391 4.749099 TGGAACATTATGCTTGCACAAAAC 59.251 37.500 0.00 0.00 0.00 2.43
3621 6392 4.953667 TGGAACATTATGCTTGCACAAAA 58.046 34.783 0.00 0.00 0.00 2.44
3622 6393 4.597404 TGGAACATTATGCTTGCACAAA 57.403 36.364 0.00 0.00 0.00 2.83
3638 6409 3.878778 AGTGAATCTGGTGCTATGGAAC 58.121 45.455 0.00 0.00 0.00 3.62
3639 6410 5.366477 TCATAGTGAATCTGGTGCTATGGAA 59.634 40.000 0.00 0.00 39.37 3.53
3640 6411 4.901250 TCATAGTGAATCTGGTGCTATGGA 59.099 41.667 0.00 0.00 39.37 3.41
3641 6412 5.219343 TCATAGTGAATCTGGTGCTATGG 57.781 43.478 0.00 0.00 39.37 2.74
3642 6413 6.519382 TCTTCATAGTGAATCTGGTGCTATG 58.481 40.000 0.00 0.00 39.91 2.23
3643 6414 6.737720 TCTTCATAGTGAATCTGGTGCTAT 57.262 37.500 0.00 0.00 35.59 2.97
3644 6415 6.070824 TGTTCTTCATAGTGAATCTGGTGCTA 60.071 38.462 0.00 0.00 35.59 3.49
3645 6416 5.181748 GTTCTTCATAGTGAATCTGGTGCT 58.818 41.667 0.00 0.00 35.59 4.40
3646 6417 4.937620 TGTTCTTCATAGTGAATCTGGTGC 59.062 41.667 0.00 0.00 35.59 5.01
3647 6418 6.596888 ACATGTTCTTCATAGTGAATCTGGTG 59.403 38.462 0.00 0.00 35.59 4.17
3648 6419 6.715280 ACATGTTCTTCATAGTGAATCTGGT 58.285 36.000 0.00 0.00 35.59 4.00
3649 6420 7.470079 CAACATGTTCTTCATAGTGAATCTGG 58.530 38.462 8.48 0.00 35.59 3.86
3650 6421 6.965500 GCAACATGTTCTTCATAGTGAATCTG 59.035 38.462 8.48 0.00 35.59 2.90
3651 6422 6.656270 TGCAACATGTTCTTCATAGTGAATCT 59.344 34.615 8.48 0.00 35.59 2.40
3652 6423 6.845302 TGCAACATGTTCTTCATAGTGAATC 58.155 36.000 8.48 0.00 35.59 2.52
3653 6424 6.822667 TGCAACATGTTCTTCATAGTGAAT 57.177 33.333 8.48 0.00 35.59 2.57
3654 6425 6.437928 GTTGCAACATGTTCTTCATAGTGAA 58.562 36.000 24.52 0.00 34.67 3.18
3655 6426 5.334028 CGTTGCAACATGTTCTTCATAGTGA 60.334 40.000 28.01 0.00 34.67 3.41
3656 6427 4.847757 CGTTGCAACATGTTCTTCATAGTG 59.152 41.667 28.01 3.19 34.67 2.74
3657 6428 4.613622 GCGTTGCAACATGTTCTTCATAGT 60.614 41.667 28.01 0.00 34.67 2.12
3658 6429 3.848019 GCGTTGCAACATGTTCTTCATAG 59.152 43.478 28.01 8.89 34.67 2.23
3659 6430 3.251972 TGCGTTGCAACATGTTCTTCATA 59.748 39.130 28.01 0.00 34.76 2.15
3660 6431 2.034432 TGCGTTGCAACATGTTCTTCAT 59.966 40.909 28.01 0.00 34.76 2.57
3661 6432 1.403323 TGCGTTGCAACATGTTCTTCA 59.597 42.857 28.01 4.41 34.76 3.02
3662 6433 2.046313 CTGCGTTGCAACATGTTCTTC 58.954 47.619 28.01 1.65 38.41 2.87
3663 6434 1.865248 GCTGCGTTGCAACATGTTCTT 60.865 47.619 28.01 0.00 38.41 2.52
3664 6435 0.318107 GCTGCGTTGCAACATGTTCT 60.318 50.000 28.01 0.00 38.41 3.01
3665 6436 0.594540 TGCTGCGTTGCAACATGTTC 60.595 50.000 28.01 13.27 40.29 3.18
3666 6437 0.032403 ATGCTGCGTTGCAACATGTT 59.968 45.000 28.01 4.92 42.61 2.71
3667 6438 0.387622 GATGCTGCGTTGCAACATGT 60.388 50.000 28.01 8.30 43.95 3.21
3668 6439 1.074319 GGATGCTGCGTTGCAACATG 61.074 55.000 28.01 17.48 43.95 3.21
3669 6440 1.213537 GGATGCTGCGTTGCAACAT 59.786 52.632 28.01 14.20 46.10 2.71
3670 6441 1.454572 AAGGATGCTGCGTTGCAACA 61.455 50.000 28.01 9.73 46.61 3.33
3671 6442 0.730494 GAAGGATGCTGCGTTGCAAC 60.730 55.000 19.89 19.89 46.61 4.17
3672 6443 0.890542 AGAAGGATGCTGCGTTGCAA 60.891 50.000 8.38 0.00 46.61 4.08
3674 6445 0.375106 GTAGAAGGATGCTGCGTTGC 59.625 55.000 0.00 0.00 0.00 4.17
3675 6446 1.725641 TGTAGAAGGATGCTGCGTTG 58.274 50.000 0.00 0.00 0.00 4.10
3676 6447 2.472695 TTGTAGAAGGATGCTGCGTT 57.527 45.000 0.00 0.00 0.00 4.84
3677 6448 2.472695 TTTGTAGAAGGATGCTGCGT 57.527 45.000 0.00 0.00 0.00 5.24
3678 6449 3.374988 TCATTTTGTAGAAGGATGCTGCG 59.625 43.478 0.00 0.00 0.00 5.18
3679 6450 4.970662 TCATTTTGTAGAAGGATGCTGC 57.029 40.909 0.00 0.00 0.00 5.25
3680 6451 6.258230 TGTTCATTTTGTAGAAGGATGCTG 57.742 37.500 0.00 0.00 0.00 4.41
3681 6452 8.579850 TTATGTTCATTTTGTAGAAGGATGCT 57.420 30.769 0.00 0.00 0.00 3.79
3682 6453 9.638239 TTTTATGTTCATTTTGTAGAAGGATGC 57.362 29.630 0.00 0.00 0.00 3.91
3707 6478 9.361315 GTAAAGGGTAAAATGCATCGTATTTTT 57.639 29.630 0.00 0.00 38.36 1.94
3708 6479 8.524487 TGTAAAGGGTAAAATGCATCGTATTTT 58.476 29.630 0.00 0.00 40.00 1.82
3709 6480 8.057536 TGTAAAGGGTAAAATGCATCGTATTT 57.942 30.769 0.00 0.00 0.00 1.40
3710 6481 7.633193 TGTAAAGGGTAAAATGCATCGTATT 57.367 32.000 0.00 0.00 0.00 1.89
3711 6482 7.817418 ATGTAAAGGGTAAAATGCATCGTAT 57.183 32.000 0.00 0.00 0.00 3.06
3712 6483 8.911918 ATATGTAAAGGGTAAAATGCATCGTA 57.088 30.769 0.00 0.00 0.00 3.43
3713 6484 7.817418 ATATGTAAAGGGTAAAATGCATCGT 57.183 32.000 0.00 0.00 0.00 3.73
3714 6485 9.528018 AAAATATGTAAAGGGTAAAATGCATCG 57.472 29.630 0.00 0.00 0.00 3.84
3722 6493 9.158233 CGACAGAGAAAATATGTAAAGGGTAAA 57.842 33.333 0.00 0.00 32.17 2.01
3723 6494 8.533657 TCGACAGAGAAAATATGTAAAGGGTAA 58.466 33.333 0.00 0.00 32.17 2.85
3724 6495 8.070034 TCGACAGAGAAAATATGTAAAGGGTA 57.930 34.615 0.00 0.00 32.17 3.69
3725 6496 6.942976 TCGACAGAGAAAATATGTAAAGGGT 58.057 36.000 0.00 0.00 32.17 4.34
3748 6519 6.530913 TGAAATTAGTGCGAGATTATGCTC 57.469 37.500 0.00 0.00 0.00 4.26
3749 6520 7.502120 AATGAAATTAGTGCGAGATTATGCT 57.498 32.000 0.00 0.00 32.46 3.79
3750 6521 9.663904 TTAAATGAAATTAGTGCGAGATTATGC 57.336 29.630 0.00 0.00 33.67 3.14
3756 6527 9.594478 TGATACTTAAATGAAATTAGTGCGAGA 57.406 29.630 0.00 0.00 33.67 4.04
3759 6530 8.895845 GCATGATACTTAAATGAAATTAGTGCG 58.104 33.333 0.00 0.00 33.67 5.34
3760 6531 9.956720 AGCATGATACTTAAATGAAATTAGTGC 57.043 29.630 0.00 0.00 33.67 4.40
3775 6546 9.646522 ATGGTAATTAAAGGAAGCATGATACTT 57.353 29.630 0.00 0.00 0.00 2.24
3776 6547 9.071276 CATGGTAATTAAAGGAAGCATGATACT 57.929 33.333 9.26 0.00 45.89 2.12
3777 6548 9.066892 TCATGGTAATTAAAGGAAGCATGATAC 57.933 33.333 12.29 0.00 46.28 2.24
3781 6552 6.183360 ACGTCATGGTAATTAAAGGAAGCATG 60.183 38.462 8.77 8.77 44.93 4.06
3782 6553 5.885912 ACGTCATGGTAATTAAAGGAAGCAT 59.114 36.000 0.00 0.00 0.00 3.79
3783 6554 5.250200 ACGTCATGGTAATTAAAGGAAGCA 58.750 37.500 0.00 0.00 0.00 3.91
3784 6555 5.220796 GGACGTCATGGTAATTAAAGGAAGC 60.221 44.000 18.91 0.00 0.00 3.86
3785 6556 6.113411 AGGACGTCATGGTAATTAAAGGAAG 58.887 40.000 18.91 0.00 0.00 3.46
3786 6557 6.057321 AGGACGTCATGGTAATTAAAGGAA 57.943 37.500 18.91 0.00 0.00 3.36
3787 6558 5.188163 TGAGGACGTCATGGTAATTAAAGGA 59.812 40.000 18.91 0.00 0.00 3.36
3788 6559 5.293569 GTGAGGACGTCATGGTAATTAAAGG 59.706 44.000 18.91 0.00 37.56 3.11
3789 6560 5.293569 GGTGAGGACGTCATGGTAATTAAAG 59.706 44.000 18.91 0.00 37.56 1.85
3790 6561 5.180271 GGTGAGGACGTCATGGTAATTAAA 58.820 41.667 18.91 0.00 37.56 1.52
3791 6562 4.383335 GGGTGAGGACGTCATGGTAATTAA 60.383 45.833 18.91 0.00 37.56 1.40
3792 6563 3.133362 GGGTGAGGACGTCATGGTAATTA 59.867 47.826 18.91 0.00 37.56 1.40
3793 6564 2.093128 GGGTGAGGACGTCATGGTAATT 60.093 50.000 18.91 0.00 37.56 1.40
3794 6565 1.485066 GGGTGAGGACGTCATGGTAAT 59.515 52.381 18.91 0.00 37.56 1.89
3795 6566 0.899720 GGGTGAGGACGTCATGGTAA 59.100 55.000 18.91 0.00 37.56 2.85
3796 6567 0.974010 GGGGTGAGGACGTCATGGTA 60.974 60.000 18.91 0.00 37.56 3.25
3797 6568 2.291043 GGGGTGAGGACGTCATGGT 61.291 63.158 18.91 0.00 37.56 3.55
3798 6569 1.553690 AAGGGGTGAGGACGTCATGG 61.554 60.000 18.91 0.00 37.56 3.66
3799 6570 0.324943 AAAGGGGTGAGGACGTCATG 59.675 55.000 18.91 0.00 37.56 3.07
3800 6571 1.064825 AAAAGGGGTGAGGACGTCAT 58.935 50.000 18.91 11.04 37.56 3.06
3801 6572 1.621814 CTAAAAGGGGTGAGGACGTCA 59.378 52.381 18.91 0.00 0.00 4.35
3802 6573 1.622312 ACTAAAAGGGGTGAGGACGTC 59.378 52.381 7.13 7.13 0.00 4.34
3803 6574 1.622312 GACTAAAAGGGGTGAGGACGT 59.378 52.381 0.00 0.00 0.00 4.34
3804 6575 1.403780 CGACTAAAAGGGGTGAGGACG 60.404 57.143 0.00 0.00 0.00 4.79
3805 6576 1.066358 CCGACTAAAAGGGGTGAGGAC 60.066 57.143 0.00 0.00 0.00 3.85
3806 6577 1.272807 CCGACTAAAAGGGGTGAGGA 58.727 55.000 0.00 0.00 0.00 3.71
3807 6578 0.252197 CCCGACTAAAAGGGGTGAGG 59.748 60.000 0.00 0.00 43.90 3.86
3808 6579 3.855159 CCCGACTAAAAGGGGTGAG 57.145 57.895 0.00 0.00 43.90 3.51
3814 6585 6.759497 AAGATTTGATTCCCGACTAAAAGG 57.241 37.500 0.00 0.00 0.00 3.11
3815 6586 8.045176 AGAAAGATTTGATTCCCGACTAAAAG 57.955 34.615 0.00 0.00 0.00 2.27
3816 6587 7.996098 AGAAAGATTTGATTCCCGACTAAAA 57.004 32.000 0.00 0.00 0.00 1.52
3817 6588 7.996098 AAGAAAGATTTGATTCCCGACTAAA 57.004 32.000 0.00 0.00 0.00 1.85
3818 6589 7.996098 AAAGAAAGATTTGATTCCCGACTAA 57.004 32.000 0.00 0.00 0.00 2.24
3819 6590 7.996098 AAAAGAAAGATTTGATTCCCGACTA 57.004 32.000 0.00 0.00 0.00 2.59
3820 6591 6.901081 AAAAGAAAGATTTGATTCCCGACT 57.099 33.333 0.00 0.00 0.00 4.18
3821 6592 7.371159 AGAAAAAGAAAGATTTGATTCCCGAC 58.629 34.615 0.00 0.00 0.00 4.79
3822 6593 7.524717 AGAAAAAGAAAGATTTGATTCCCGA 57.475 32.000 0.00 0.00 0.00 5.14
3823 6594 9.860898 ATTAGAAAAAGAAAGATTTGATTCCCG 57.139 29.630 0.00 0.00 0.00 5.14
3834 6605 9.802039 TGGGCTACTAAATTAGAAAAAGAAAGA 57.198 29.630 7.06 0.00 0.00 2.52
3837 6608 9.357161 TGTTGGGCTACTAAATTAGAAAAAGAA 57.643 29.630 7.06 0.00 0.00 2.52
3838 6609 8.789762 GTGTTGGGCTACTAAATTAGAAAAAGA 58.210 33.333 7.06 0.00 0.00 2.52
3839 6610 8.573035 TGTGTTGGGCTACTAAATTAGAAAAAG 58.427 33.333 7.06 0.53 0.00 2.27
3840 6611 8.466617 TGTGTTGGGCTACTAAATTAGAAAAA 57.533 30.769 7.06 0.00 0.00 1.94
3841 6612 8.644374 ATGTGTTGGGCTACTAAATTAGAAAA 57.356 30.769 7.06 0.00 0.00 2.29
3842 6613 8.519526 CAATGTGTTGGGCTACTAAATTAGAAA 58.480 33.333 7.06 0.00 0.00 2.52
3843 6614 7.885922 TCAATGTGTTGGGCTACTAAATTAGAA 59.114 33.333 7.06 0.00 35.99 2.10
3844 6615 7.398829 TCAATGTGTTGGGCTACTAAATTAGA 58.601 34.615 7.06 0.00 35.99 2.10
3845 6616 7.624360 TCAATGTGTTGGGCTACTAAATTAG 57.376 36.000 0.00 0.00 35.99 1.73
3846 6617 8.301002 GTTTCAATGTGTTGGGCTACTAAATTA 58.699 33.333 0.00 0.00 35.99 1.40
3847 6618 6.909550 TTCAATGTGTTGGGCTACTAAATT 57.090 33.333 0.00 0.00 35.99 1.82
3848 6619 6.295067 GGTTTCAATGTGTTGGGCTACTAAAT 60.295 38.462 0.00 0.00 35.99 1.40
3849 6620 5.010213 GGTTTCAATGTGTTGGGCTACTAAA 59.990 40.000 0.00 0.00 35.99 1.85
3850 6621 4.521256 GGTTTCAATGTGTTGGGCTACTAA 59.479 41.667 0.00 0.00 35.99 2.24
3851 6622 4.076394 GGTTTCAATGTGTTGGGCTACTA 58.924 43.478 0.00 0.00 35.99 1.82
3852 6623 2.890945 GGTTTCAATGTGTTGGGCTACT 59.109 45.455 0.00 0.00 35.99 2.57
3853 6624 2.351350 CGGTTTCAATGTGTTGGGCTAC 60.351 50.000 0.00 0.00 35.99 3.58
3854 6625 1.883275 CGGTTTCAATGTGTTGGGCTA 59.117 47.619 0.00 0.00 35.99 3.93
3855 6626 0.673437 CGGTTTCAATGTGTTGGGCT 59.327 50.000 0.00 0.00 35.99 5.19
3856 6627 0.671251 TCGGTTTCAATGTGTTGGGC 59.329 50.000 0.00 0.00 35.99 5.36
3857 6628 1.678627 TGTCGGTTTCAATGTGTTGGG 59.321 47.619 0.00 0.00 35.99 4.12
3858 6629 3.641437 ATGTCGGTTTCAATGTGTTGG 57.359 42.857 0.00 0.00 35.99 3.77
3859 6630 5.123820 AGGATATGTCGGTTTCAATGTGTTG 59.876 40.000 0.00 0.00 36.65 3.33
3860 6631 5.253330 AGGATATGTCGGTTTCAATGTGTT 58.747 37.500 0.00 0.00 0.00 3.32
3861 6632 4.843728 AGGATATGTCGGTTTCAATGTGT 58.156 39.130 0.00 0.00 0.00 3.72
3862 6633 5.586243 AGAAGGATATGTCGGTTTCAATGTG 59.414 40.000 0.00 0.00 0.00 3.21
3863 6634 5.745227 AGAAGGATATGTCGGTTTCAATGT 58.255 37.500 0.00 0.00 0.00 2.71
3864 6635 6.683974 AAGAAGGATATGTCGGTTTCAATG 57.316 37.500 0.00 0.00 0.00 2.82
3865 6636 7.112779 AGAAAGAAGGATATGTCGGTTTCAAT 58.887 34.615 0.00 0.00 0.00 2.57
3866 6637 6.472887 AGAAAGAAGGATATGTCGGTTTCAA 58.527 36.000 0.00 0.00 0.00 2.69
3867 6638 6.049955 AGAAAGAAGGATATGTCGGTTTCA 57.950 37.500 0.00 0.00 0.00 2.69
3868 6639 8.664211 ATTAGAAAGAAGGATATGTCGGTTTC 57.336 34.615 0.00 0.00 0.00 2.78
3871 6642 9.930693 GATAATTAGAAAGAAGGATATGTCGGT 57.069 33.333 0.00 0.00 0.00 4.69
3872 6643 9.929180 TGATAATTAGAAAGAAGGATATGTCGG 57.071 33.333 0.00 0.00 0.00 4.79
3891 6662 9.547279 AGGGTTTGAGATAAAAAGGTGATAATT 57.453 29.630 0.00 0.00 0.00 1.40
3892 6663 9.547279 AAGGGTTTGAGATAAAAAGGTGATAAT 57.453 29.630 0.00 0.00 0.00 1.28
3893 6664 8.950007 AAGGGTTTGAGATAAAAAGGTGATAA 57.050 30.769 0.00 0.00 0.00 1.75
3894 6665 7.614192 GGAAGGGTTTGAGATAAAAAGGTGATA 59.386 37.037 0.00 0.00 0.00 2.15
3895 6666 6.437477 GGAAGGGTTTGAGATAAAAAGGTGAT 59.563 38.462 0.00 0.00 0.00 3.06
3896 6667 5.773176 GGAAGGGTTTGAGATAAAAAGGTGA 59.227 40.000 0.00 0.00 0.00 4.02
3897 6668 5.775195 AGGAAGGGTTTGAGATAAAAAGGTG 59.225 40.000 0.00 0.00 0.00 4.00
3898 6669 5.965486 AGGAAGGGTTTGAGATAAAAAGGT 58.035 37.500 0.00 0.00 0.00 3.50
3899 6670 6.918067 AAGGAAGGGTTTGAGATAAAAAGG 57.082 37.500 0.00 0.00 0.00 3.11
3902 6673 9.594936 TGATTAAAGGAAGGGTTTGAGATAAAA 57.405 29.630 0.00 0.00 0.00 1.52
3903 6674 9.243105 CTGATTAAAGGAAGGGTTTGAGATAAA 57.757 33.333 0.00 0.00 0.00 1.40
3904 6675 7.339466 GCTGATTAAAGGAAGGGTTTGAGATAA 59.661 37.037 0.00 0.00 0.00 1.75
3905 6676 6.828785 GCTGATTAAAGGAAGGGTTTGAGATA 59.171 38.462 0.00 0.00 0.00 1.98
3906 6677 5.654209 GCTGATTAAAGGAAGGGTTTGAGAT 59.346 40.000 0.00 0.00 0.00 2.75
3907 6678 5.010282 GCTGATTAAAGGAAGGGTTTGAGA 58.990 41.667 0.00 0.00 0.00 3.27
3908 6679 4.158579 GGCTGATTAAAGGAAGGGTTTGAG 59.841 45.833 0.00 0.00 0.00 3.02
3909 6680 4.086457 GGCTGATTAAAGGAAGGGTTTGA 58.914 43.478 0.00 0.00 0.00 2.69
3910 6681 4.089361 AGGCTGATTAAAGGAAGGGTTTG 58.911 43.478 0.00 0.00 0.00 2.93
3911 6682 4.202673 TGAGGCTGATTAAAGGAAGGGTTT 60.203 41.667 0.00 0.00 0.00 3.27
3912 6683 3.333680 TGAGGCTGATTAAAGGAAGGGTT 59.666 43.478 0.00 0.00 0.00 4.11
3913 6684 2.919602 TGAGGCTGATTAAAGGAAGGGT 59.080 45.455 0.00 0.00 0.00 4.34
3914 6685 3.652057 TGAGGCTGATTAAAGGAAGGG 57.348 47.619 0.00 0.00 0.00 3.95
3915 6686 5.046288 AGATGAGGCTGATTAAAGGAAGG 57.954 43.478 0.00 0.00 0.00 3.46
3916 6687 8.566260 CAAATAGATGAGGCTGATTAAAGGAAG 58.434 37.037 0.00 0.00 0.00 3.46
3917 6688 8.274322 TCAAATAGATGAGGCTGATTAAAGGAA 58.726 33.333 0.00 0.00 0.00 3.36
3918 6689 7.805163 TCAAATAGATGAGGCTGATTAAAGGA 58.195 34.615 0.00 0.00 0.00 3.36
3919 6690 8.455903 TTCAAATAGATGAGGCTGATTAAAGG 57.544 34.615 0.00 0.00 0.00 3.11
3920 6691 9.894783 CATTCAAATAGATGAGGCTGATTAAAG 57.105 33.333 0.00 0.00 0.00 1.85
3921 6692 9.412460 ACATTCAAATAGATGAGGCTGATTAAA 57.588 29.630 0.00 0.00 0.00 1.52
3922 6693 8.985315 ACATTCAAATAGATGAGGCTGATTAA 57.015 30.769 0.00 0.00 0.00 1.40
3923 6694 8.985315 AACATTCAAATAGATGAGGCTGATTA 57.015 30.769 0.00 0.00 0.00 1.75
3924 6695 7.778853 AGAACATTCAAATAGATGAGGCTGATT 59.221 33.333 0.00 0.00 0.00 2.57
3925 6696 7.288560 AGAACATTCAAATAGATGAGGCTGAT 58.711 34.615 0.00 0.00 0.00 2.90
3926 6697 6.656902 AGAACATTCAAATAGATGAGGCTGA 58.343 36.000 0.00 0.00 0.00 4.26
3927 6698 6.939132 AGAACATTCAAATAGATGAGGCTG 57.061 37.500 0.00 0.00 0.00 4.85
3928 6699 9.638176 AAATAGAACATTCAAATAGATGAGGCT 57.362 29.630 0.00 0.00 0.00 4.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.