Multiple sequence alignment - TraesCS5A01G444300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G444300 chr5A 100.000 3003 0 0 1 3003 624476317 624473315 0.000000e+00 5546
1 TraesCS5A01G444300 chr5A 82.600 2023 242 60 14 1994 623684158 623686112 0.000000e+00 1685
2 TraesCS5A01G444300 chr5A 84.722 1080 147 17 1 1068 623954015 623955088 0.000000e+00 1064
3 TraesCS5A01G444300 chr5A 83.198 494 49 17 1272 1753 623955222 623955693 3.580000e-114 422
4 TraesCS5A01G444300 chr5D 92.784 2647 114 31 4 2623 499957294 499954698 0.000000e+00 3759
5 TraesCS5A01G444300 chr5D 81.723 2008 228 72 15 1994 499446989 499448885 0.000000e+00 1546
6 TraesCS5A01G444300 chr5D 83.099 1065 158 16 14 1060 499652129 499653189 0.000000e+00 950
7 TraesCS5A01G444300 chr5D 86.905 420 31 11 1343 1753 499653393 499653797 1.640000e-122 449
8 TraesCS5A01G444300 chr5D 86.726 339 25 6 2654 2992 499954696 499954378 2.850000e-95 359
9 TraesCS5A01G444300 chr5B 93.799 2403 108 20 4 2385 621399930 621397548 0.000000e+00 3574
10 TraesCS5A01G444300 chr5B 81.509 2028 249 63 1 1994 620305951 620307886 0.000000e+00 1552
11 TraesCS5A01G444300 chr5B 81.151 1825 219 63 43 1820 620668469 620670215 0.000000e+00 1349
12 TraesCS5A01G444300 chr5B 83.183 999 142 22 89 1068 620825502 620826493 0.000000e+00 891
13 TraesCS5A01G444300 chr5B 85.781 647 40 22 2370 3001 621397530 621396921 3.260000e-179 638
14 TraesCS5A01G444300 chr5B 83.773 493 48 14 1272 1753 620826626 620827097 3.550000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G444300 chr5A 624473315 624476317 3002 True 5546.0 5546 100.000 1 3003 1 chr5A.!!$R1 3002
1 TraesCS5A01G444300 chr5A 623684158 623686112 1954 False 1685.0 1685 82.600 14 1994 1 chr5A.!!$F1 1980
2 TraesCS5A01G444300 chr5A 623954015 623955693 1678 False 743.0 1064 83.960 1 1753 2 chr5A.!!$F2 1752
3 TraesCS5A01G444300 chr5D 499954378 499957294 2916 True 2059.0 3759 89.755 4 2992 2 chr5D.!!$R1 2988
4 TraesCS5A01G444300 chr5D 499446989 499448885 1896 False 1546.0 1546 81.723 15 1994 1 chr5D.!!$F1 1979
5 TraesCS5A01G444300 chr5D 499652129 499653797 1668 False 699.5 950 85.002 14 1753 2 chr5D.!!$F2 1739
6 TraesCS5A01G444300 chr5B 621396921 621399930 3009 True 2106.0 3574 89.790 4 3001 2 chr5B.!!$R1 2997
7 TraesCS5A01G444300 chr5B 620305951 620307886 1935 False 1552.0 1552 81.509 1 1994 1 chr5B.!!$F1 1993
8 TraesCS5A01G444300 chr5B 620668469 620670215 1746 False 1349.0 1349 81.151 43 1820 1 chr5B.!!$F2 1777
9 TraesCS5A01G444300 chr5B 620825502 620827097 1595 False 664.5 891 83.478 89 1753 2 chr5B.!!$F3 1664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 358 0.037697 CTTGGGTCGTGTTCCATCGA 60.038 55.0 0.0 0.0 32.48 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2426 0.108472 GCTACGGTAAAACGGAGGCT 60.108 55.0 1.16 0.0 44.87 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 4.787563 GCTGATATTTGAGTTGTGCATCGG 60.788 45.833 0.00 0.00 0.00 4.18
79 90 5.667539 TTGATCTGAGAGGTAGAACAAGG 57.332 43.478 0.00 0.00 33.70 3.61
188 202 2.280552 CCAAATGCAGCAGCTGGGT 61.281 57.895 24.13 0.00 42.74 4.51
208 222 1.076549 GCCTTCCCCATGTCCACAA 59.923 57.895 0.00 0.00 0.00 3.33
210 224 0.611896 CCTTCCCCATGTCCACAACC 60.612 60.000 0.00 0.00 0.00 3.77
330 348 2.103410 GTTGTGCAACTTGGGTCGT 58.897 52.632 7.72 0.00 38.25 4.34
340 358 0.037697 CTTGGGTCGTGTTCCATCGA 60.038 55.000 0.00 0.00 32.48 3.59
393 411 3.006110 ACGTGATTCTTGAACCTACGGAA 59.994 43.478 15.09 0.00 34.69 4.30
598 616 2.569059 CCATGATCCTTGCCTACACAG 58.431 52.381 0.00 0.00 0.00 3.66
805 824 0.957395 CAGGTTTGATGACGGCTGCT 60.957 55.000 0.00 0.00 0.00 4.24
990 1060 2.689034 CCCCTCTCCCCTCGCTTT 60.689 66.667 0.00 0.00 0.00 3.51
1087 1157 3.628280 GAGACCACGACTGACGCCC 62.628 68.421 0.00 0.00 46.94 6.13
1140 1228 4.056125 GCCAAGGCCGCAAAGACC 62.056 66.667 0.00 0.00 34.56 3.85
1141 1229 3.373565 CCAAGGCCGCAAAGACCC 61.374 66.667 0.00 0.00 0.00 4.46
1142 1230 3.373565 CAAGGCCGCAAAGACCCC 61.374 66.667 0.00 0.00 0.00 4.95
1143 1231 4.678743 AAGGCCGCAAAGACCCCC 62.679 66.667 0.00 0.00 0.00 5.40
1145 1233 4.986708 GGCCGCAAAGACCCCCAA 62.987 66.667 0.00 0.00 0.00 4.12
1319 1437 0.391661 TTCGCCTTGATCTGACTGGC 60.392 55.000 0.00 0.00 40.14 4.85
1355 1474 0.031857 TGTTTTTGCGCAGATGGTGG 59.968 50.000 11.31 0.00 0.00 4.61
2017 2237 2.188161 GTAGAGCCTCCGTCCTCCG 61.188 68.421 0.00 0.00 0.00 4.63
2033 2253 0.178975 TCCGGCAAACCAGTTTCCAT 60.179 50.000 0.00 0.00 34.57 3.41
2076 2296 1.134788 GTCGGTGGTAGTCCAGGATTG 60.135 57.143 0.00 0.00 45.24 2.67
2095 2315 7.604164 CAGGATTGTGTGTTCTAGACTGTAAAT 59.396 37.037 0.00 0.00 0.00 1.40
2167 2388 2.735134 GTGTATCTGTGGGTGAAACGAC 59.265 50.000 0.00 0.00 38.12 4.34
2342 2574 2.224572 TGCCCTGCAATGCAAATTCTTT 60.225 40.909 9.92 0.00 38.41 2.52
2385 2650 4.510711 CAGATCTGAAATCGGGTTGAGATG 59.489 45.833 18.34 0.00 0.00 2.90
2461 2730 1.025041 GGAAATGCCAATCCTCGTCC 58.975 55.000 0.00 0.00 36.34 4.79
2481 2750 4.022676 GTCCTTAATTTGCTTCCGTCCAAA 60.023 41.667 0.00 0.00 35.64 3.28
2482 2751 4.585162 TCCTTAATTTGCTTCCGTCCAAAA 59.415 37.500 0.00 0.00 34.93 2.44
2483 2752 5.069251 TCCTTAATTTGCTTCCGTCCAAAAA 59.931 36.000 0.00 0.00 34.93 1.94
2486 2755 7.041440 CCTTAATTTGCTTCCGTCCAAAAATTT 60.041 33.333 0.00 0.00 34.93 1.82
2487 2756 6.691754 AATTTGCTTCCGTCCAAAAATTTT 57.308 29.167 0.00 0.00 34.93 1.82
2488 2757 5.726729 TTTGCTTCCGTCCAAAAATTTTC 57.273 34.783 3.41 0.00 0.00 2.29
2489 2758 4.392921 TGCTTCCGTCCAAAAATTTTCA 57.607 36.364 3.41 0.00 0.00 2.69
2490 2759 4.954875 TGCTTCCGTCCAAAAATTTTCAT 58.045 34.783 3.41 0.00 0.00 2.57
2491 2760 6.090483 TGCTTCCGTCCAAAAATTTTCATA 57.910 33.333 3.41 0.00 0.00 2.15
2492 2761 6.155827 TGCTTCCGTCCAAAAATTTTCATAG 58.844 36.000 3.41 0.00 0.00 2.23
2493 2762 6.156519 GCTTCCGTCCAAAAATTTTCATAGT 58.843 36.000 3.41 0.00 0.00 2.12
2494 2763 7.040340 TGCTTCCGTCCAAAAATTTTCATAGTA 60.040 33.333 3.41 0.00 0.00 1.82
2519 2796 2.149578 GGCTGGCATCATAGCTGTAAG 58.850 52.381 0.00 0.00 39.80 2.34
2521 2798 3.244215 GGCTGGCATCATAGCTGTAAGTA 60.244 47.826 0.00 0.00 39.80 2.24
2522 2799 3.743396 GCTGGCATCATAGCTGTAAGTAC 59.257 47.826 0.00 0.00 36.99 2.73
2523 2800 4.740634 GCTGGCATCATAGCTGTAAGTACA 60.741 45.833 0.00 0.00 36.99 2.90
2524 2801 5.351948 TGGCATCATAGCTGTAAGTACAA 57.648 39.130 0.00 0.00 35.50 2.41
2568 2849 3.829044 TACATGACCGGGGCGTCG 61.829 66.667 6.32 0.00 35.40 5.12
2623 2929 4.438744 GCGATTTTGGATGGACCTACTTTG 60.439 45.833 0.00 0.00 39.86 2.77
2624 2930 4.096382 CGATTTTGGATGGACCTACTTTGG 59.904 45.833 0.00 0.00 39.86 3.28
2625 2931 4.463050 TTTTGGATGGACCTACTTTGGT 57.537 40.909 0.00 0.00 44.10 3.67
2626 2932 3.433306 TTGGATGGACCTACTTTGGTG 57.567 47.619 0.00 0.00 41.00 4.17
2627 2933 2.626785 TGGATGGACCTACTTTGGTGA 58.373 47.619 0.00 0.00 41.00 4.02
2628 2934 3.189606 TGGATGGACCTACTTTGGTGAT 58.810 45.455 0.00 0.00 41.00 3.06
2629 2935 3.591527 TGGATGGACCTACTTTGGTGATT 59.408 43.478 0.00 0.00 41.00 2.57
2630 2936 4.200092 GGATGGACCTACTTTGGTGATTC 58.800 47.826 0.00 0.00 41.00 2.52
2631 2937 4.324254 GGATGGACCTACTTTGGTGATTCA 60.324 45.833 0.00 0.00 41.00 2.57
2632 2938 4.286297 TGGACCTACTTTGGTGATTCAG 57.714 45.455 0.00 0.00 41.00 3.02
2633 2939 3.010420 GGACCTACTTTGGTGATTCAGC 58.990 50.000 8.91 8.91 41.00 4.26
2634 2940 3.559171 GGACCTACTTTGGTGATTCAGCA 60.559 47.826 14.28 14.28 41.00 4.41
2635 2941 4.265073 GACCTACTTTGGTGATTCAGCAT 58.735 43.478 18.46 7.43 41.53 3.79
2636 2942 4.265073 ACCTACTTTGGTGATTCAGCATC 58.735 43.478 18.46 0.00 41.53 3.91
2637 2943 4.263462 ACCTACTTTGGTGATTCAGCATCA 60.263 41.667 18.46 8.39 41.53 3.07
2638 2944 4.334759 CCTACTTTGGTGATTCAGCATCAG 59.665 45.833 18.46 17.98 42.98 2.90
2650 2956 2.202797 CATCAGCTGCTACCGCGT 60.203 61.111 9.47 0.00 39.65 6.01
2651 2957 2.202797 ATCAGCTGCTACCGCGTG 60.203 61.111 9.47 0.00 39.65 5.34
2669 2975 2.731341 CGTGAATCTTCCTTCGTACGCT 60.731 50.000 11.24 0.00 0.00 5.07
2739 3046 6.878317 AGATGAATGTGATCTTCTTAACGGA 58.122 36.000 0.00 0.00 31.79 4.69
2740 3047 6.983307 AGATGAATGTGATCTTCTTAACGGAG 59.017 38.462 0.00 0.00 31.79 4.63
2741 3048 7.364232 AGATGAATGTGATCTTCTTAACGGAGT 60.364 37.037 0.00 0.00 34.48 3.85
2742 3049 7.165460 TGAATGTGATCTTCTTAACGGAGTA 57.835 36.000 0.00 0.00 45.00 2.59
2743 3050 7.033791 TGAATGTGATCTTCTTAACGGAGTAC 58.966 38.462 0.00 0.00 45.00 2.73
2744 3051 4.978186 TGTGATCTTCTTAACGGAGTACG 58.022 43.478 0.00 0.00 45.00 3.67
2745 3052 4.142534 TGTGATCTTCTTAACGGAGTACGG 60.143 45.833 0.00 0.00 45.00 4.02
2746 3053 4.012374 TGATCTTCTTAACGGAGTACGGT 58.988 43.478 0.00 0.00 45.00 4.83
2747 3054 5.065218 GTGATCTTCTTAACGGAGTACGGTA 59.935 44.000 0.00 0.00 45.00 4.02
2748 3055 4.946784 TCTTCTTAACGGAGTACGGTAC 57.053 45.455 10.29 10.29 45.95 3.34
2749 3056 4.579869 TCTTCTTAACGGAGTACGGTACT 58.420 43.478 20.17 20.17 45.95 2.73
2750 3057 4.631813 TCTTCTTAACGGAGTACGGTACTC 59.368 45.833 31.05 31.05 45.95 2.59
2806 3122 2.991250 TGCAGGCTTGGAGAGATTTAC 58.009 47.619 0.00 0.00 0.00 2.01
2841 3157 4.160814 TGCAGGAAAATGAATGGGATCTTG 59.839 41.667 0.00 0.00 0.00 3.02
2890 3206 4.760047 GCAGTGTCGGCCGTGGAT 62.760 66.667 27.15 7.50 0.00 3.41
2908 3224 2.413837 GATACGTGGGGTATGCATGTC 58.586 52.381 10.16 2.14 41.91 3.06
2957 3273 1.153568 TCTGCGGCAGAAGATTCGG 60.154 57.895 29.13 1.79 37.57 4.30
2974 3290 2.508663 GAGTAACCGTCGGCTGCC 60.509 66.667 12.28 9.11 0.00 4.85
2975 3291 3.291101 GAGTAACCGTCGGCTGCCA 62.291 63.158 20.29 2.90 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.260907 CCCGATGCACAACTCAAATATCAG 60.261 45.833 0.00 0.00 0.00 2.90
10 11 3.876914 TCCCGATGCACAACTCAAATATC 59.123 43.478 0.00 0.00 0.00 1.63
12 14 3.342377 TCCCGATGCACAACTCAAATA 57.658 42.857 0.00 0.00 0.00 1.40
18 20 0.179004 TGGTTTCCCGATGCACAACT 60.179 50.000 0.00 0.00 0.00 3.16
30 32 6.677781 TCATCGTAATTTCAGATGGTTTCC 57.322 37.500 13.74 0.00 41.35 3.13
79 90 3.933332 GTCTACCAGGTGATACAAGTTGC 59.067 47.826 0.76 0.00 0.00 4.17
188 202 0.548926 TGTGGACATGGGGAAGGCTA 60.549 55.000 0.00 0.00 0.00 3.93
340 358 3.730061 CGTCGTTTTGATAGGCTACGAGT 60.730 47.826 8.09 0.00 41.27 4.18
393 411 3.518590 GTGTAGCTGGTTAACGTAGCAT 58.481 45.455 25.73 16.89 39.84 3.79
610 628 1.843992 GGATGCACCAATTCGAATGC 58.156 50.000 12.25 12.85 38.79 3.56
613 631 1.939934 GATCGGATGCACCAATTCGAA 59.060 47.619 0.00 0.00 38.90 3.71
754 773 3.781307 TTCCCATCCGACGGCCAG 61.781 66.667 9.66 0.74 0.00 4.85
1101 1171 2.027625 GGTCGCCTTGGTCGTCTTG 61.028 63.158 4.14 0.00 0.00 3.02
1105 1175 2.030562 CTTGGTCGCCTTGGTCGT 59.969 61.111 0.00 0.00 0.00 4.34
1128 1216 4.986708 TTGGGGGTCTTTGCGGCC 62.987 66.667 0.00 0.00 0.00 6.13
1129 1217 3.373565 CTTGGGGGTCTTTGCGGC 61.374 66.667 0.00 0.00 0.00 6.53
1130 1218 2.676471 CCTTGGGGGTCTTTGCGG 60.676 66.667 0.00 0.00 0.00 5.69
1131 1219 3.373565 GCCTTGGGGGTCTTTGCG 61.374 66.667 0.00 0.00 37.43 4.85
1132 1220 3.373565 CGCCTTGGGGGTCTTTGC 61.374 66.667 0.00 0.00 37.43 3.68
1133 1221 3.373565 GCGCCTTGGGGGTCTTTG 61.374 66.667 0.00 0.00 37.97 2.77
1134 1222 4.678743 GGCGCCTTGGGGGTCTTT 62.679 66.667 22.15 0.00 37.28 2.52
1142 1230 4.659172 TCACCTTGGGCGCCTTGG 62.659 66.667 28.56 25.74 0.00 3.61
1143 1231 2.597217 TTCACCTTGGGCGCCTTG 60.597 61.111 28.56 16.10 0.00 3.61
1144 1232 2.282462 CTTCACCTTGGGCGCCTT 60.282 61.111 28.56 2.52 0.00 4.35
1145 1233 2.754664 CTTCTTCACCTTGGGCGCCT 62.755 60.000 28.56 1.80 0.00 5.52
1157 1260 3.717294 GGGCGGAGGGCTTCTTCA 61.717 66.667 0.00 0.00 42.94 3.02
1319 1437 0.248054 ACAAGCACGCACGAACAAAG 60.248 50.000 0.00 0.00 0.00 2.77
2017 2237 2.298729 TGCTAATGGAAACTGGTTTGCC 59.701 45.455 13.47 10.07 39.69 4.52
2020 2240 5.869649 AAACTGCTAATGGAAACTGGTTT 57.130 34.783 0.00 0.00 35.14 3.27
2024 2244 4.321974 GGGGAAAACTGCTAATGGAAACTG 60.322 45.833 0.00 0.00 0.00 3.16
2033 2253 3.117663 ACAGAACAGGGGAAAACTGCTAA 60.118 43.478 0.00 0.00 39.55 3.09
2194 2425 1.918595 CTACGGTAAAACGGAGGCTC 58.081 55.000 5.78 5.78 41.08 4.70
2195 2426 0.108472 GCTACGGTAAAACGGAGGCT 60.108 55.000 1.16 0.00 44.87 4.58
2203 2434 4.517453 ACAAATCAAGCTGCTACGGTAAAA 59.483 37.500 0.90 0.00 0.00 1.52
2204 2435 4.069304 ACAAATCAAGCTGCTACGGTAAA 58.931 39.130 0.90 0.00 0.00 2.01
2258 2489 4.277174 TGCACTATTTGTTTTCGACACCAT 59.723 37.500 0.00 0.00 38.18 3.55
2303 2534 2.032178 GGCAAGAGCGATTGACCATAAC 59.968 50.000 7.97 0.00 43.41 1.89
2309 2540 1.986575 GCAGGGCAAGAGCGATTGAC 61.987 60.000 7.97 4.82 43.41 3.18
2336 2568 6.676990 AATCCAAAGAGGCAGAAAAAGAAT 57.323 33.333 0.00 0.00 37.29 2.40
2342 2574 3.828451 CTGGAAATCCAAAGAGGCAGAAA 59.172 43.478 3.35 0.00 46.97 2.52
2385 2650 5.902613 TCTCAAATTCCATCACATTCCAC 57.097 39.130 0.00 0.00 0.00 4.02
2455 2724 3.000727 ACGGAAGCAAATTAAGGACGAG 58.999 45.455 0.00 0.00 0.00 4.18
2461 2730 7.420184 AATTTTTGGACGGAAGCAAATTAAG 57.580 32.000 0.00 0.00 0.00 1.85
2481 2750 5.621329 GCCAGCCACGTTACTATGAAAATTT 60.621 40.000 0.00 0.00 0.00 1.82
2482 2751 4.142469 GCCAGCCACGTTACTATGAAAATT 60.142 41.667 0.00 0.00 0.00 1.82
2483 2752 3.377172 GCCAGCCACGTTACTATGAAAAT 59.623 43.478 0.00 0.00 0.00 1.82
2486 2755 1.276705 TGCCAGCCACGTTACTATGAA 59.723 47.619 0.00 0.00 0.00 2.57
2487 2756 0.899019 TGCCAGCCACGTTACTATGA 59.101 50.000 0.00 0.00 0.00 2.15
2488 2757 1.867233 GATGCCAGCCACGTTACTATG 59.133 52.381 0.00 0.00 0.00 2.23
2489 2758 1.484653 TGATGCCAGCCACGTTACTAT 59.515 47.619 0.00 0.00 0.00 2.12
2490 2759 0.899019 TGATGCCAGCCACGTTACTA 59.101 50.000 0.00 0.00 0.00 1.82
2491 2760 0.253044 ATGATGCCAGCCACGTTACT 59.747 50.000 0.00 0.00 0.00 2.24
2492 2761 1.867233 CTATGATGCCAGCCACGTTAC 59.133 52.381 0.00 0.00 0.00 2.50
2493 2762 1.810031 GCTATGATGCCAGCCACGTTA 60.810 52.381 0.00 0.00 0.00 3.18
2494 2763 1.097547 GCTATGATGCCAGCCACGTT 61.098 55.000 0.00 0.00 0.00 3.99
2530 2807 5.700832 TGTACACAGAAGAATACAGCCTTTG 59.299 40.000 0.00 0.00 0.00 2.77
2540 2817 3.369471 CCCGGTCATGTACACAGAAGAAT 60.369 47.826 0.00 0.00 0.00 2.40
2541 2818 2.028476 CCCGGTCATGTACACAGAAGAA 60.028 50.000 0.00 0.00 0.00 2.52
2543 2820 1.405526 CCCCGGTCATGTACACAGAAG 60.406 57.143 0.00 0.00 0.00 2.85
2548 2825 2.510691 CGCCCCGGTCATGTACAC 60.511 66.667 0.00 0.00 0.00 2.90
2568 2849 6.569179 TTCCAAATTTCAGCAGTAGTAACC 57.431 37.500 0.00 0.00 0.00 2.85
2633 2939 2.202797 ACGCGGTAGCAGCTGATG 60.203 61.111 20.43 0.36 45.49 3.07
2634 2940 2.202797 CACGCGGTAGCAGCTGAT 60.203 61.111 20.43 15.46 45.49 2.90
2635 2941 2.225791 ATTCACGCGGTAGCAGCTGA 62.226 55.000 20.43 0.00 45.49 4.26
2636 2942 1.756375 GATTCACGCGGTAGCAGCTG 61.756 60.000 12.47 10.11 45.49 4.24
2637 2943 1.519455 GATTCACGCGGTAGCAGCT 60.519 57.895 12.47 0.00 45.49 4.24
2638 2944 1.084370 AAGATTCACGCGGTAGCAGC 61.084 55.000 12.47 0.00 45.49 5.25
2639 2945 0.924090 GAAGATTCACGCGGTAGCAG 59.076 55.000 12.47 0.00 45.49 4.24
2640 2946 0.459585 GGAAGATTCACGCGGTAGCA 60.460 55.000 12.47 0.00 45.49 3.49
2641 2947 0.179108 AGGAAGATTCACGCGGTAGC 60.179 55.000 12.47 0.00 40.74 3.58
2642 2948 2.194271 GAAGGAAGATTCACGCGGTAG 58.806 52.381 12.47 0.00 0.00 3.18
2643 2949 1.468565 CGAAGGAAGATTCACGCGGTA 60.469 52.381 12.47 0.00 0.00 4.02
2644 2950 0.736325 CGAAGGAAGATTCACGCGGT 60.736 55.000 12.47 0.00 0.00 5.68
2645 2951 0.736325 ACGAAGGAAGATTCACGCGG 60.736 55.000 12.47 0.00 0.00 6.46
2646 2952 1.582502 GTACGAAGGAAGATTCACGCG 59.417 52.381 3.53 3.53 0.00 6.01
2647 2953 1.582502 CGTACGAAGGAAGATTCACGC 59.417 52.381 10.44 0.00 0.00 5.34
2648 2954 1.582502 GCGTACGAAGGAAGATTCACG 59.417 52.381 21.65 0.00 33.89 4.35
2649 2955 2.877335 AGCGTACGAAGGAAGATTCAC 58.123 47.619 21.65 0.00 0.00 3.18
2650 2956 3.250744 CAAGCGTACGAAGGAAGATTCA 58.749 45.455 21.65 0.00 0.00 2.57
2651 2957 2.603560 CCAAGCGTACGAAGGAAGATTC 59.396 50.000 21.65 0.00 0.00 2.52
2710 3017 5.199024 AGAAGATCACATTCATCTCTCCG 57.801 43.478 0.00 0.00 29.82 4.63
2751 3058 4.703093 GGGCCAATTAGCTTACTGTTGTAA 59.297 41.667 4.39 0.00 37.16 2.41
2752 3059 4.266714 GGGCCAATTAGCTTACTGTTGTA 58.733 43.478 4.39 0.00 0.00 2.41
2753 3060 3.089284 GGGCCAATTAGCTTACTGTTGT 58.911 45.455 4.39 0.00 0.00 3.32
2754 3061 2.097466 CGGGCCAATTAGCTTACTGTTG 59.903 50.000 4.39 0.00 0.00 3.33
2783 3090 0.106335 ATCTCTCCAAGCCTGCATCG 59.894 55.000 0.00 0.00 0.00 3.84
2806 3122 3.136123 CCTGCATCACCAAGCCCG 61.136 66.667 0.00 0.00 0.00 6.13
2841 3157 0.316204 TAGCGGGCCGATTAGCTAAC 59.684 55.000 33.44 8.38 38.99 2.34
2890 3206 1.491668 AGACATGCATACCCCACGTA 58.508 50.000 0.00 0.00 0.00 3.57
2908 3224 2.768492 GCTCCCGCTCCAATGCAAG 61.768 63.158 0.00 0.00 0.00 4.01
2932 3248 4.704103 TCTGCCGCAGACCCCTCT 62.704 66.667 19.36 0.00 35.39 3.69
2957 3273 2.508663 GGCAGCCGACGGTTACTC 60.509 66.667 16.73 2.14 0.00 2.59
2974 3290 2.656055 CCACCCAAAACGGCCATG 59.344 61.111 2.24 0.00 0.00 3.66
2975 3291 2.603171 CCCACCCAAAACGGCCAT 60.603 61.111 2.24 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.